requirements.txt

# This file may be used to create an environment using:
# $ conda create --name <env> --file <this file>
# platform: linux-64
_libgcc_mutex=0.1=conda_forge
_openmp_mutex=4.5=1_gnu
_r-mutex=1.0.1=anacondar_1
agate=1.6.3=pypi_0
agate-dbf=0.2.2=pypi_0
agate-excel=0.2.4=pypi_0
agate-sql=0.5.7=pypi_0
aioeasywebdav=2.4.0=py36h9f0ad1d_1001
aiohttp=3.7.4=py36h8f6f2f9_0
amply=0.1.4=py_0
appdirs=1.4.4=pyh9f0ad1d_0
argon2-cffi=20.1.0=py36h8f6f2f9_2
arriba=2.1.0=h3198e80_1
async-timeout=3.0.1=py_1000
async_generator=1.10=py_0
atk-1.0=2.36.0=h3371d22_4
attmap=0.13.0=pyhd8ed1ab_0
attrs=20.3.0=pyhd3deb0d_0
awscli=1.19.112=pypi_0
azure-common=1.1.27=pyhd8ed1ab_0
azure-core=1.12.0=pyhd8ed1ab_0
azure-storage-blob=12.8.0=pyhd8ed1ab_0
babel=2.9.1=pypi_0
backcall=0.2.0=pyh9f0ad1d_0
backports=1.0=py36_1
backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
bax2bam=0.0.11=0
bcrypt=3.2.0=py36h8f6f2f9_1
bedtools=2.30.0=h7d7f7ad_1
binutils_impl_linux-64=2.35.1=h193b22a_2
binutils_linux-64=2.35=h67ddf6f_30
bioconductor-annotationdbi=1.54.0=r41hdfd78af_0
bioconductor-biobase=2.52.0=r41hd029910_0
bioconductor-biocfilecache=2.0.0=r41hdfd78af_0
bioconductor-biocgenerics=0.38.0=r41hdfd78af_0
bioconductor-biocio=1.2.0=r41hdfd78af_0
bioconductor-biocparallel=1.26.0=r41h399db7b_0
bioconductor-biomart=2.48.0=r41hdfd78af_0
bioconductor-biostrings=2.60.0=r41hd029910_0
bioconductor-delayedarray=0.18.0=r41hd029910_0
bioconductor-genomeinfodb=1.28.0=r41hdfd78af_0
bioconductor-genomeinfodbdata=1.2.6=r41hdfd78af_0
bioconductor-genomicalignments=1.28.0=r41hd029910_0
bioconductor-genomicfeatures=1.44.0=r41hdfd78af_0
bioconductor-genomicranges=1.44.0=r41hd029910_0
bioconductor-iranges=2.26.0=r41hd029910_0
bioconductor-keggrest=1.32.0=r41hdfd78af_0
bioconductor-matrixgenerics=1.4.0=r41hdfd78af_0
bioconductor-rhtslib=1.24.0=r41hd029910_0
bioconductor-rsamtools=2.8.0=r41h399db7b_0
bioconductor-rtracklayer=1.52.0=r41hd029910_0
bioconductor-s4vectors=0.30.0=r41hd029910_0
bioconductor-summarizedexperiment=1.22.0=r41hdfd78af_0
bioconductor-txdb.hsapiens.ucsc.hg38.knowngene=3.13.0=r41hdfd78af_0
bioconductor-xvector=0.32.0=r41hd029910_0
bioconductor-zlibbioc=1.38.0=r41hd029910_0
biopython=1.79=py36h8f6f2f9_0
bleach=3.3.0=pyh44b312d_0
blinker=1.4=py_1
boost-cpp=1.74.0=h312852a_4
boto=2.49.0=py_0
boto3=1.17.55=pyhd8ed1ab_0
botocore=1.20.112=pypi_0
brotlipy=0.7.0=py36he6145b8_1001
bwidget=1.9.14=0
bzip2=1.0.8=h7f98852_4
c-ares=1.17.1=h7f98852_1
ca-certificates=2021.7.5=h06a4308_1
cachetools=4.2.1=pyhd8ed1ab_0
cairo=1.16.0=h6cf1ce9_1008
certifi=2021.5.30=py36h5fab9bb_0
cffi=1.14.5=py36hc120d54_0
chardet=4.0.0=py36h5fab9bb_1
click=8.0.1=py36h5fab9bb_0
coincbc=2.10.5=hcee13e7_1
colorama=0.4.3=pypi_0
commonmark=0.9.1=py_0
conda=4.10.1=py36h5fab9bb_0
conda-package-handling=1.7.3=py36h8f6f2f9_0
configargparse=1.4=pyhd8ed1ab_0
cryptography=3.4.7=py36hb60f036_0
csvkit=1.0.6=pypi_0
curl=7.77.0=hea6ffbf_0
cycler=0.10.0=py36_0
dataclasses=0.7=py36_0
datrie=0.8.2=py36h8c4c3a4_1
dbfread=2.0.7=pypi_0
decorator=4.4.2=py_0
defusedxml=0.7.1=pyhd8ed1ab_0
docutils=0.15.2=pypi_0
dropbox=11.7.0=pyhd8ed1ab_0
entrypoints=0.3=py36h9f0ad1d_1002
et-xmlfile=1.1.0=pypi_0
expat=2.3.0=h9c3ff4c_0
fftw=3.3.9=nompi_hcdd671c_101
filechunkio=1.8=py36_1
filelock=3.0.12=pyh9f0ad1d_0
font-ttf-dejavu-sans-mono=2.37=hab24e00_0
font-ttf-inconsolata=2.001=hab24e00_0
font-ttf-source-code-pro=2.030=hab24e00_0
font-ttf-ubuntu=0.83=hab24e00_0
fontconfig=2.13.1=hba837de_1005
fonts-conda-ecosystem=1=0
fonts-conda-forge=1=0
freetype=2.10.4=h0708190_1
fribidi=1.0.10=h516909a_0
ftputil=5.0.1=pyhd8ed1ab_0
future=0.18.2=py36h5fab9bb_3
gcc_impl_linux-64=9.3.0=h70c0ae5_19
gcc_linux-64=9.3.0=hf25ea35_30
gdk-pixbuf=2.42.6=h04a7f16_0
gettext=0.21.0=hf68c758_0
gfortran_impl_linux-64=9.3.0=hc4a2995_19
gfortran_linux-64=9.3.0=hdc58fab_30
ghostscript=9.53.3=h58526e2_2
giflib=5.2.1=h516909a_2
gitdb=4.0.7=pyhd8ed1ab_0
gitpython=3.1.15=pyhd8ed1ab_0
google-api-core=1.26.2=pyhd8ed1ab_0
google-api-python-client=2.2.0=pyhd8ed1ab_0
google-auth=1.29.0=pyhd3eb1b0_0
google-auth-httplib2=0.1.0=pyhd8ed1ab_0
google-cloud-core=1.6.0=pyhd3eb1b0_0
google-cloud-storage=1.37.1=pyhd3eb1b0_0
google-crc32c=1.1.2=py36h0208b43_0
google-resumable-media=1.2.0=pyhd3deb0d_0
googleapis-common-protos=1.53.0=py36h5fab9bb_0
graphite2=1.3.14=h23475e2_0
graphviz=2.47.1=h85b4f2f_1
greenlet=1.1.0=pypi_0
gsl=2.6=he838d99_2
gtk2=2.24.33=h539f30e_1
gts=0.7.6=h64030ff_2
gxx_impl_linux-64=9.3.0=hd87eabc_19
gxx_linux-64=9.3.0=h3fbe746_30
harfbuzz=2.8.2=h83ec7ef_0
hdf5=1.10.6=nompi_h6a2412b_1114
htslib=1.12=h9093b5e_1
httplib2=0.19.1=pyhd8ed1ab_0
icu=68.1=h58526e2_0
idna=2.10=pyh9f0ad1d_0
idna_ssl=1.1.0=py36h9f0ad1d_1001
ikp3db=1.4.1=pypi_0
imagemagick=7.0.11_13=pl5320hb118871_1
importlib-metadata=4.0.1=py36h5fab9bb_0
importlib_metadata=4.0.1=hd8ed1ab_0
iniconfig=1.1.1=pyh9f0ad1d_0
intervaltree=3.1.0=pypi_0
ipykernel=5.5.5=py36hcb3619a_0
ipython=7.16.1=py36he448a4c_2
ipython_genutils=0.2.0=py36_0
isodate=0.6.0=py_1
jbig=2.1=h516909a_2002
jedi=0.17.2=py36h9f0ad1d_1
jemalloc=5.2.1=h9c3ff4c_5
jinja2=2.11.3=pyh44b312d_0
jmespath=0.10.0=pyh9f0ad1d_0
joblib=1.0.1=pyhd8ed1ab_0
jpeg=9d=h516909a_0
jsonschema=3.2.0=py36h9f0ad1d_1
jupyter_client=6.1.12=pyhd8ed1ab_0
jupyter_core=4.7.1=py36h5fab9bb_0
jupyterlab_pygments=0.1.2=pyh9f0ad1d_0
k8=0.2.5=h9a82719_1
kernel-headers_linux-64=2.6.32=h77966d4_13
kiwisolver=1.3.1=py36h605e78d_1
krb5=1.19.1=hcc1bbae_0
lcms2=2.12=hddcbb42_0
ld_impl_linux-64=2.35.1=hea4e1c9_2
leather=0.3.3=pypi_0
lerc=2.2.1=h9c3ff4c_0
libarchive=3.5.1=hccf745f_2
libblas=3.9.0=8_openblas
libcblas=3.9.0=8_openblas
libcrc32c=1.1.1=he1b5a44_2
libcurl=7.77.0=h2574ce0_0
libdeflate=1.7=h7f98852_5
libedit=3.1.20210216=h27cfd23_1
libev=4.33=h516909a_1
libffi=3.3=h58526e2_2
libgcc-devel_linux-64=9.3.0=h7864c58_19
libgcc-ng=9.3.0=h2828fa1_19
libgd=2.3.2=h78a0170_0
libgfortran-ng=9.3.0=hff62375_19
libgfortran5=9.3.0=hff62375_19
libglib=2.68.3=h3e27bee_0
libgomp=9.3.0=h2828fa1_19
libiconv=1.16=h516909a_0
liblapack=3.9.0=8_openblas
libnghttp2=1.43.0=h812cca2_0
libopenblas=0.3.12=pthreads_h4812303_1
libpng=1.6.37=hed695b0_2
libprotobuf=3.15.8=h780b84a_0
librsvg=2.50.7=hc3c00ef_0
libsodium=1.0.18=h516909a_1
libsolv=0.7.18=h780b84a_0
libssh2=1.9.0=ha56f1ee_6
libstdcxx-devel_linux-64=9.3.0=hb016644_19
libstdcxx-ng=9.3.0=h6de172a_19
libtiff=4.3.0=hf544144_1
libtool=2.4.6=h58526e2_1007
libuuid=2.32.1=h14c3975_1000
libwebp=1.2.0=h3452ae3_0
libwebp-base=1.2.0=h7f98852_2
libxcb=1.14=h7b6447c_0
libxml2=2.9.12=h72842e0_0
logmuse=0.2.6=pyh8c360ce_0
lz4-c=1.9.3=h9c3ff4c_0
lzo=2.10=h516909a_1000
make=4.3=hd18ef5c_1
mamba=0.13.0=py36h05d92e0_0
markupsafe=1.1.1=py36h8f6f2f9_3
matplotlib-base=3.3.4=py36hd391965_0
minimap2=2.18=h5bf99c6_0
mistune=0.8.4=py36h8f6f2f9_1003
more-itertools=8.7.0=pyhd8ed1ab_0
msrest=0.6.21=pyh44b312d_0
multidict=5.1.0=py36h8f6f2f9_1
mysql-connector-c=6.1.11=h6eb9d5d_1007
nbclient=0.5.3=pyhd8ed1ab_0
nbconvert=6.0.7=py36h5fab9bb_3
nbformat=5.1.3=pyhd8ed1ab_0
ncbi-ngs-sdk=2.11.0=hff44eed_0
ncurses=6.2=h58526e2_4
nest-asyncio=1.5.1=pyhd8ed1ab_0
networkx=2.5.1=pyhd8ed1ab_0
notebook=6.4.0=py36h06a4308_0
numpy=1.19.5=py36h2aa4a07_1
oauth2client=4.1.3=py_0
oauthlib=3.1.0=py_0
olefile=0.46=pyh9f0ad1d_1
openjpeg=2.4.0=hf7af979_0
openpyxl=3.0.7=pypi_0
openssl=1.1.1k=h7f98852_0
ossuuid=1.6.2=hf484d3e_1000
oyaml=1.0=pyhd8ed1ab_0
packaging=20.9=pyh44b312d_0
pandas=1.1.5=py36h284efc9_0
pandoc=2.13=h7f98852_0
pandocfilters=1.4.3=py36h06a4308_1
pango=1.48.7=hb8ff022_0
paramiko=2.7.2=pyh9f0ad1d_0
parsedatetime=2.4=pypi_0
parso=0.7.1=pyh9f0ad1d_0
patsy=0.5.1=py_0
pbcore=2.1.2=py37_0
pbh5tools=0.8.0=pypi_0
pcre=8.44=he1b5a44_0
pcre2=10.37=h032f7d1_0
peppy=0.31.1=pyhd8ed1ab_0
perl=5.26.2=h36c2ea0_1008
perl-app-cpanminus=1.7044=pl526_1
perl-business-isbn=3.004=pl526_0
perl-business-isbn-data=20140910.003=pl526_0
perl-carp=1.38=pl526_3
perl-constant=1.33=pl526_1
perl-data-dumper=2.173=pl526_0
perl-encode=2.88=pl526_1
perl-exporter=5.72=pl526_1
perl-extutils-makemaker=7.36=pl526_1
perl-file-path=2.16=pl526_0
perl-file-temp=0.2304=pl526_2
perl-mime-base64=3.15=pl526_1
perl-parent=0.236=pl526_1
perl-uri=1.76=pl526_0
perl-xml-libxml=2.0132=pl526h7ec2d77_1
perl-xml-namespacesupport=1.12=pl526_0
perl-xml-sax=1.02=pl526_0
perl-xml-sax-base=1.09=pl526_0
perl-xsloader=0.24=pl526_0
pexpect=4.8.0=py36h9f0ad1d_1
pickleshare=0.7.5=py36h9f0ad1d_1002
pillow=8.2.0=py36ha6010c0_1
pip=21.0.1=pyhd8ed1ab_0
piper=0.12.1=py_1
pixman=0.40.0=h36c2ea0_0
pkg-config=0.29.2=h516909a_1008
pluggy=0.13.1=py36h5fab9bb_4
ply=3.11=py36_0
prettytable=2.1.0=pyhd8ed1ab_0
prometheus_client=0.10.1=pyhd8ed1ab_0
prompt-toolkit=3.0.18=pyha770c72_0
protobuf=3.15.8=py36hc4f0c31_0
psutil=5.8.0=py36h8f6f2f9_1
ptyprocess=0.7.0=pyhd3deb0d_0
pulp=2.4=py36h5fab9bb_0
py=1.10.0=pyhd3deb0d_0
pyasn1=0.4.8=py_0
pyasn1-modules=0.2.8=py_0
pybedtools=0.8.2=pypi_0
pycosat=0.6.3=py36h8f6f2f9_1006
pycparser=2.20=pyh9f0ad1d_2
pyfaidx=0.6.1=pyh5e36f6f_0
pygments=2.8.1=pyhd8ed1ab_0
pygraphviz=1.6=py36hf2b72a0_1
pyjwt=2.0.1=pyhd8ed1ab_1
pynacl=1.4.0=py36h8f6f2f9_2
pyopenssl=20.0.1=pyhd8ed1ab_0
pyparsing=2.4.7=pyh9f0ad1d_0
pyrsistent=0.17.3=py36h8f6f2f9_2
pysam=0.16.0.1=py36h61e5637_3
pysftp=0.2.9=py36_0
pysocks=1.7.1=py36h5fab9bb_3
pytest=6.2.3=py36h5fab9bb_0
python=3.6.13=hffdb5ce_0_cpython
python-dateutil=2.8.1=py_0
python-irodsclient=0.8.6=pyhd8ed1ab_0
python-slugify=5.0.2=pypi_0
python_abi=3.6=1_cp36m
pytimeparse=1.1.8=pypi_0
pytz=2021.1=pyhd8ed1ab_0
pyyaml=5.4.1=py36h8f6f2f9_0
pyzmq=22.0.3=py36h7068817_1
r=4.1=r41hd8ed1ab_1004
r-askpass=1.1=r41hcfec24a_2
r-assertthat=0.2.1=r41hc72bb7e_2
r-backports=1.2.1=r41hcfec24a_0
r-base=4.1.0=hb67fd72_2
r-base64enc=0.1_3=r41hcfec24a_1004
r-bh=1.75.0_0=r41hc72bb7e_0
r-bit=4.0.4=r41hcfec24a_0
r-bit64=4.0.5=r41hcfec24a_0
r-bitops=1.0_7=r41hcfec24a_0
r-blob=1.2.1=r41hc72bb7e_1
r-boot=1.3_28=r41hc72bb7e_0
r-brio=1.1.2=r41hcfec24a_0
r-broom=0.7.8=r41hc72bb7e_0
r-bslib=0.2.5.1=r41hc72bb7e_0
r-cachem=1.0.5=r41hcfec24a_0
r-callr=3.7.0=r41hc72bb7e_0
r-caret=6.0_88=r41hcfec24a_0
r-cellranger=1.1.0=r41hc72bb7e_1003
r-circlize=0.4.13=r41hc72bb7e_0
r-class=7.3_19=r41hcfec24a_0
r-cli=3.0.1=r41hc72bb7e_0
r-clipr=0.7.1=r41hc72bb7e_0
r-cluster=2.1.2=r41h859d828_0
r-codetools=0.2_18=r41hc72bb7e_0
r-colorspace=2.0_2=r41hcfec24a_0
r-commonmark=1.7=r41hcfec24a_1002
r-cpp11=0.3.1=r41hc72bb7e_0
r-crayon=1.4.1=r41hc72bb7e_0
r-crul=1.1.0=r41h785f33e_0
r-curl=4.3.2=r41hcfec24a_0
r-data.table=1.14.0=r41hcfec24a_0
r-dbi=1.1.1=r41hc72bb7e_0
r-dbplyr=2.1.1=r41hc72bb7e_0
r-desc=1.3.0=r41hc72bb7e_0
r-diffobj=0.3.4=r41hcfec24a_0
r-digest=0.6.27=r41h03ef668_0
r-doparallel=1.0.16=r41hc72bb7e_0
r-dplyr=1.0.7=r41h03ef668_0
r-dtplyr=1.1.0=r41hc72bb7e_0
r-ellipsis=0.3.2=r41hcfec24a_0
r-essentials=4.1=r41hd8ed1ab_2002
r-evaluate=0.14=r41hc72bb7e_2
r-fansi=0.4.2=r41hcfec24a_0
r-farver=2.1.0=r41h03ef668_0
r-fastmap=1.1.0=r41h03ef668_0
r-filelock=1.0.2=r41hcfec24a_1002
r-forcats=0.5.1=r41hc72bb7e_0
r-foreach=1.5.1=r41hc72bb7e_0
r-foreign=0.8_81=r41hcfec24a_0
r-formatr=1.11=r41hc72bb7e_0
r-fs=1.5.0=r41h03ef668_0
r-futile.logger=1.4.3=r41hc72bb7e_1003
r-futile.options=1.0.1=r41hc72bb7e_1002
r-gargle=1.2.0=r41hc72bb7e_0
r-generics=0.1.0=r41hc72bb7e_0
r-ggplot2=3.3.5=r41hc72bb7e_0
r-gistr=0.9.0=r41hc72bb7e_0
r-glmnet=4.1_2=r41h859d828_0
r-globaloptions=0.1.2=r41ha770c72_0
r-glue=1.4.2=r41hcfec24a_0
r-googledrive=2.0.0=r41hc72bb7e_0
r-googlesheets4=0.3.0=r41hc72bb7e_0
r-gower=0.2.2=r41hcfec24a_0
r-gtable=0.3.0=r41hc72bb7e_3
r-gtools=3.9.2=r41hcfec24a_0
r-haven=2.4.1=r41h2713e49_0
r-hexbin=1.28.2=r41h859d828_0
r-highr=0.9=r41hc72bb7e_0
r-hms=1.1.0=r41hc72bb7e_0
r-htmltools=0.5.1.1=r41h03ef668_0
r-htmlwidgets=1.5.3=r41hc72bb7e_0
r-httpcode=0.3.0=r41ha770c72_1
r-httpuv=1.6.1=r41h03ef668_0
r-httr=1.4.2=r41hc72bb7e_0
r-ids=1.0.1=r41hc72bb7e_1
r-ipred=0.9_11=r41hcfec24a_0
r-irdisplay=1.0=r41hd8ed1ab_0
r-irkernel=1.2=r41hc72bb7e_0
r-isoband=0.2.5=r41h03ef668_0
r-iterators=1.0.13=r41hc72bb7e_0
r-jquerylib=0.1.4=r41hc72bb7e_0
r-jsonlite=1.7.2=r41hcfec24a_0
r-kernsmooth=2.23_20=r41h742201e_0
r-knitr=1.33=r41hc72bb7e_0
r-labeling=0.4.2=r41hc72bb7e_0
r-lambda.r=1.2.4=r41hc72bb7e_1
r-later=1.2.0=r41h03ef668_0
r-lattice=0.20_44=r41hcfec24a_0
r-lava=1.6.9=r41hc72bb7e_0
r-lazyeval=0.2.2=r41hcfec24a_2
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