- Bug fix: Updated DoubletFinder with modified function names.
- Added "-D|--define" to support defining an individual sample without a SAMPLEFILE.
- Added support for "skip=True" in DoubletFinder, useful for multiplex libraries.
- Separated sample file (e.g., samples.txt) from config.yaml.
- Updated installation instructions using conda.
- Implemented conditional execution for Dropkick and scPred.
- Implemented qc_report.html for a QC summary.