VCF2SQL

Motivation

Generate the SQL code to insert a VCF into mysql. http://www.sqlite.org/

Compilation

See also Compilation

$ make vcf2sql

##Synopsis

$ java -jar dist/vcf2sql.jar file.vcf

##Options

Option	Description
-h	get help (this screen) and exit.
-v	print version and exit.
-L (level)	log level. One of java.util.logging.Level . Optional.

Examples

java -jar dist/vcf2sql.jar  file.vcf | mysql -u user -p -D vcf_db 

Database schema

See also

• VCF2XML