Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

CalExp2ddCt not recognizing groups with varied numbers of BioRep #1

Open
maqy15 opened this issue Jun 10, 2023 · 3 comments
Open

CalExp2ddCt not recognizing groups with varied numbers of BioRep #1

maqy15 opened this issue Jun 10, 2023 · 3 comments

Comments

@maqy15
Copy link

maqy15 commented Jun 10, 2023

Hi! I'm trying to analyze my RT-qPCR data (with 4 technical replicates) using the 2^(-ddCt) method.

While I was trying to exclude some very obvious Cq outliers, I noticed that the CalExp2ddCt function does not recognize an input data table that contains groups with varied BioRep numbers properly. Is there a way to strip the outliers from the results? Or is there a way to remove them from the input datasheet without disturbing the output?

Thanks a lot!

@lixiang117423
Copy link
Owner

I will fix that as soon as possible. I've been busy writing my graduation thesis recently.

@lixiang117423
Copy link
Owner

we have added remove.outliers parameter, could you please try it again, pease let me know it works or not.

@roywhite98
Copy link

详哥,为啥这个包的ref.group的2-ddct不是1,看您文章的图也有这个问题,很困惑,望指教!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

3 participants