crisprML

Library design for CRISPr screen. Based on code provided by Alex Perez.

Order of scripts

gRNA_from_annotations.py
specificity_score_distance_neighbors.py
extract_screening_gRNAs.py
gRNA_data_gene_check.py

Automating the applicatin by bash scripts

gRNA_from_annotations.sh -- runs gRNA_from_annotations.py
feature_generation_from_sequence.sh -- runs specificity_score_distance_neighbors.py