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Motif plotting subcommands strand issues #34

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marcus1487 opened this issue Feb 21, 2017 · 0 comments
Open

Motif plotting subcommands strand issues #34

marcus1487 opened this issue Feb 21, 2017 · 0 comments

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@marcus1487
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Both the plot_motif_centered and plot_motif_with_stats subcommands do not correctly handle strands. plot_motif_centered only searches the forward strand. The plot_motif_with_stats subcommand only prints regions from the forward strand and stats need to be reversed for negative strand genome locs. This is currently giving incorrect statistics distributions as negative strand is reversed to motif sequence.
marcus1487 added a commit that referenced this issue Feb 23, 2017
@marcus1487
Fixed statistics distributions reverse strand bug for plot_motif_with…
e085f08 
…_stats function. Need to include negative strand reads in top portion of plot. This fix makes plot correct, just incomplete (missing significant reverse strand locations). Addressed part of #34.
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