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nonrigid-fusion
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#!/bin/bash
JAR=$HOME/.m2/repository/net/preibisch/BigStitcher-Spark/0.1.0-SNAPSHOT/BigStitcher-Spark-0.1.0-SNAPSHOT.jar
java \
-Xmx8g -Dspark.master=local[8] \
-cp $JAR:/home/marti/.m2/repository/sc/fiji/bigdataviewer-core/10.6.3/bigdataviewer-core-10.6.3.jar:/home/marti/.m2/repository/net/imglib2/imglib2-realtransform/4.0.3/imglib2-realtransform-4.0.3.jar:/home/marti/.m2/repository/jitk/jitk-tps/3.0.4/jitk-tps-3.0.4.jar:/home/marti/.m2/repository/org/ejml/ejml-all/0.41/ejml-all-0.41.jar:/home/marti/.m2/repository/org/ejml/ejml-core/0.41/ejml-core-0.41.jar:/home/marti/.m2/repository/org/ejml/ejml-fdense/0.41/ejml-fdense-0.41.jar:/home/marti/.m2/repository/org/ejml/ejml-ddense/0.41/ejml-ddense-0.41.jar:/home/marti/.m2/repository/org/ejml/ejml-cdense/0.41/ejml-cdense-0.41.jar:/home/marti/.m2/repository/org/ejml/ejml-zdense/0.41/ejml-zdense-0.41.jar:/home/marti/.m2/repository/org/ejml/ejml-dsparse/0.41/ejml-dsparse-0.41.jar:/home/marti/.m2/repository/org/ejml/ejml-simple/0.41/ejml-simple-0.41.jar:/home/marti/.m2/repository/org/ejml/ejml-fsparse/0.41/ejml-fsparse-0.41.jar:/home/marti/.m2/repository/org/scijava/scijava-common/2.99.0/scijava-common-2.99.0.jar:/home/marti/.m2/repository/org/scijava/parsington/3.1.0/parsington-3.1.0.jar:/home/marti/.m2/repository/org/scijava/scijava-listeners/1.0.0-beta-3/scijava-listeners-1.0.0-beta-3.jar:/home/marti/.m2/repository/org/scijava/ui-behaviour/2.0.8/ui-behaviour-2.0.8.jar:/home/marti/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar:/home/marti/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar:/home/marti/.m2/repository/com/formdev/flatlaf/3.5.1/flatlaf-3.5.1.jar:/home/marti/.m2/repository/com/google/code/gson/gson/2.10.1/gson-2.10.1.jar:/home/marti/.m2/repository/com/miglayout/miglayout-swing/5.3/miglayout-swing-5.3.jar:/home/marti/.m2/repository/com/miglayout/miglayout-core/5.3/miglayout-core-5.3.jar:/home/marti/.m2/repository/dev/dirs/directories/26/directories-26.jar:/home/marti/.m2/repository/net/sf/trove4j/trove4j/3.0.3/trove4j-3.0.3.jar:/home/marti/.m2/repository/org/jdom/jdom2/2.0.6.1/jdom2-2.0.6.1.jar:/home/marti/.m2/repository/org/yaml/snakeyaml/2.3/snakeyaml-2.3.jar:/home/marti/.m2/repository/sc/fiji/bigdataviewer-vistools/1.0.0-beta-36/bigdataviewer-vistools-1.0.0-beta-36.jar:/home/marti/.m2/repository/net/imglib2/imglib2-cache/1.0.0-beta-19/imglib2-cache-1.0.0-beta-19.jar:/home/marti/.m2/repository/com/github/ben-manes/caffeine/caffeine/2.9.3/caffeine-2.9.3.jar:/home/marti/.m2/repository/org/checkerframework/checker-qual/3.48.0/checker-qual-3.48.0.jar:/home/marti/.m2/repository/com/google/errorprone/error_prone_annotations/2.32.0/error_prone_annotations-2.32.0.jar:/home/marti/.m2/repository/org/scijava/scijava-optional/1.0.1/scijava-optional-1.0.1.jar:/home/marti/.m2/repository/net/imglib2/imglib2/7.1.2/imglib2-7.1.2.jar:/home/marti/.m2/repository/net/imglib2/imglib2-algorithm/0.16.0/imglib2-algorithm-0.16.0.jar:/home/marti/.m2/repository/net/imglib2/imglib2-roi/0.15.1/imglib2-roi-0.15.1.jar:/home/marti/.m2/repository/gov/nist/math/jama/1.0.3/jama-1.0.3.jar:/home/marti/.m2/repository/org/ojalgo/ojalgo/45.1.1/ojalgo-45.1.1.jar:/home/marti/.m2/repository/org/bigdataviewer/bigdataviewer-n5/1.0.1/bigdataviewer-n5-1.0.1.jar:/home/marti/.m2/repository/org/janelia/saalfeldlab/n5-universe/1.6.0/n5-universe-1.6.0.jar:/home/marti/.m2/repository/org/janelia/saalfeldlab/n5-google-cloud/4.1.1/n5-google-cloud-4.1.1.jar:/home/marti/.m2/repository/com/google/cloud/google-cloud-storage/2.34.0/google-cloud-storage-2.34.0.jar:/home/marti/.m2/repository/io/grpc/grpc-context/1.68.0/grpc-context-1.68.0.jar:/home/marti/.m2/repository/io/opencensus/opencensus-contrib-http-util/0.31.1/opencensus-contrib-http-util-0.31.1.jar:/home/marti/.m2/repository/com/google/http-client/google-http-client-jackson2/1.45.0/google-http-client-jackson2-1.45.0.jar:/home/marti/.m2/repository/com/google/http-client/google-http-client-gson/1.45.0/google-http-client-gson-1.45.0.jar:/home/marti/.m2/repository/com/google/api-client/google-api-client/2.7.0/google-api-client-2.7.0.jar:/home/marti/.m2/repository/com/google/oauth-client/google-oauth-client/1.36.0/google-oauth-client-1.36.0.jar:/home/marti/.m2/repository/com/google/http-client/google-http-client-apache-v2/1.45.0/google-http-client-apache-v2-1.45.0.jar:/home/marti/.m2/repository/com/google/apis/google-api-services-storage/v1-rev20240209-2.0.0/google-api-services-storage-v1-rev20240209-2.0.0.jar:/home/marti/.m2/repository/com/google/cloud/google-cloud-core/2.33.0/google-cloud-core-2.33.0.jar:/home/marti/.m2/repository/com/google/auto/value/auto-value-annotations/1.11.0/auto-value-annotations-1.11.0.jar:/home/marti/.m2/repository/com/google/cloud/google-cloud-core-http/2.33.0/google-cloud-core-http-2.33.0.jar:/home/marti/.m2/repository/com/google/http-client/google-http-client-appengine/1.45.0/google-http-client-appengine-1.45.0.jar:/home/marti/.m2/repository/com/google/api/gax-httpjson/2.54.1/gax-httpjson-2.54.1.jar:/home/marti/.m2/repository/com/google/cloud/google-cloud-core-grpc/2.33.0/google-cloud-core-grpc-2.33.0.jar:/home/marti/.m2/repository/com/google/api/gax/2.54.1/gax-2.54.1.jar:/home/marti/.m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\
net.preibisch.bigstitcher.spark.SparkNonRigidFusion "$@"