pyproject.toml

[tool.poetry]
name = "osmose"
version = "0.2.5"
description = "OSmOSE toolkit"
authors = ["OSmOSE team"]
readme = "README.md"
packages = [
    { include = "OSmOSE", from = "src" },
]

[tool.poetry.dependencies]
python = "^3.10"
sphinx = ">=7.0.0,<8.0.0"
sphinx-rtd-theme = "^2.0.0"
sphinx-copybutton = "^0.5.2"
myst-parser = "^4.0.0"
soundfile = "^0.12.1"
pandas = "^2.2.2"
coverage = "^7.0.5"
tqdm = "^4.64.1"
tomlkit = "^0.11.6"
matplotlib = "^3.9.0"
tomli = "^2.0.1"
numpy = "^1.24.2"
scipy = {version = "^1.10.1", python = ">=3.10,<3.12"}
termcolor = "^2.2.0"
filelock = "^3.10.2"
seaborn = "^0.12.2"
netcdf4 = "^1.6.4"
pykdtree = "^1.3.9"
cdsapi = "^0.7.2"
librosa = "^0.10.1"

[tool.poetry.group.dev.dependencies]
pytest = "^7.2.1"
black = "^24.4.2"
pytest-cov = "^4.0.0"
jupyter = "^1.0.0"
ruff = "^0.7.1"

[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"

[tool.pytest.ini_options]
addopts = [
    "--import-mode=importlib",
]
filterwarnings = [
    "ignore:pkg_resources is deprecated as an API:DeprecationWarning",
    "ignore:pkg_resources.declare_namespace('sphinxcontrib'):DeprecationWarning",
    "error::SyntaxWarning"
]
markers = [
    "unit: Mark test as unitary test. Run only these with '-m unit'.",
    "integ: Mark test as integration test. Run only these with '-m integ'.",
    "reg: Mark test as regression test. Run only these with '-m ref'.",
    "allow_log_write_to_file: Disables the automatic patch_filehandlers fixture that prevents logging handlers to write into files."
]

[tool.ruff]
select = ["ALL"]

[tool.ruff.lint.extend-per-file-ignores]
"tests/**/*.py" = [
    # at least this three should be fine in tests:
    "S101", # asserts allowed in tests...
    "ARG", # Unused function args -> fixtures nevertheless are functionally relevant...
    "FBT", # Don't care about booleans as positional arguments in tests, e.g. via @pytest.mark.parametrize()
    "D", # Docstring-related stuff
    "SLF001", # Access to private variables
    "BLE001", # Blind exceptions
    "PLR0913", # Too many arguments in methods
]