From 563baec7d5e4668c557a0de94f9168c2a63a55f3 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Sat, 1 Feb 2025 06:14:43 -0600 Subject: [PATCH] Bump the poetry-dependencies group with 20 updates (#38) Bumps the poetry-dependencies group with 20 updates: | Package | From | To | | --- | --- | --- | | [numpy](https://github.com/numpy/numpy) | `2.2.1` | `2.2.2` | | [scipy](https://github.com/scipy/scipy) | `1.14.1` | `1.15.1` | | [biopython](https://github.com/biopython/biopython) | `1.84` | `1.85` | | [pygments](https://github.com/pygments/pygments) | `2.18.0` | `2.19.1` | | [black](https://github.com/psf/black) | `24.10.0` | `25.1.0` | | [pre-commit](https://github.com/pre-commit/pre-commit) | `4.0.1` | `4.1.0` | | [ruff](https://github.com/astral-sh/ruff) | `0.8.4` | `0.9.4` | | [sphinx-autodoc-typehints](https://github.com/tox-dev/sphinx-autodoc-typehints) | `2.5.0` | `3.0.1` | | [anyio](https://github.com/agronholm/anyio) | `4.7.0` | `4.8.0` | | [certifi](https://github.com/certifi/python-certifi) | `2024.12.14` | `2025.1.31` | | [executing](https://github.com/alexmojaki/executing) | `2.1.0` | `2.2.0` | | [filelock](https://github.com/tox-dev/py-filelock) | `3.16.1` | `3.17.0` | | [identify](https://github.com/pre-commit/identify) | `2.6.4` | `2.6.6` | | [ipython](https://github.com/ipython/ipython) | `8.31.0` | `8.32.0` | | [prompt-toolkit](https://github.com/prompt-toolkit/python-prompt-toolkit) | `3.0.48` | `3.0.50` | | ruamel-yaml | `0.18.7` | `0.18.10` | | [starlette](https://github.com/encode/starlette) | `0.45.1` | `0.45.3` | | [virtualenv](https://github.com/pypa/virtualenv) | `20.28.0` | `20.29.1` | | [watchfiles](https://github.com/samuelcolvin/watchfiles) | `1.0.3` | `1.0.4` | | [websockets](https://github.com/python-websockets/websockets) | `14.1` | `14.2` | Updates `numpy` from 2.2.1 to 2.2.2 - [Release notes](https://github.com/numpy/numpy/releases) - [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst) - [Commits](https://github.com/numpy/numpy/compare/v2.2.1...v2.2.2) Updates `scipy` from 1.14.1 to 1.15.1 - [Release notes](https://github.com/scipy/scipy/releases) - [Commits](https://github.com/scipy/scipy/compare/v1.14.1...v1.15.1) Updates `biopython` from 1.84 to 1.85 - [Changelog](https://github.com/biopython/biopython/blob/master/NEWS.rst) - [Commits](https://github.com/biopython/biopython/commits) Updates `pygments` from 2.18.0 to 2.19.1 - [Release notes](https://github.com/pygments/pygments/releases) - [Changelog](https://github.com/pygments/pygments/blob/master/CHANGES) - [Commits](https://github.com/pygments/pygments/compare/2.18.0...2.19.1) Updates `black` from 24.10.0 to 25.1.0 - [Release notes](https://github.com/psf/black/releases) - [Changelog](https://github.com/psf/black/blob/main/CHANGES.md) - [Commits](https://github.com/psf/black/compare/24.10.0...25.1.0) Updates `pre-commit` from 4.0.1 to 4.1.0 - [Release notes](https://github.com/pre-commit/pre-commit/releases) - [Changelog](https://github.com/pre-commit/pre-commit/blob/main/CHANGELOG.md) - [Commits](https://github.com/pre-commit/pre-commit/compare/v4.0.1...v4.1.0) Updates `ruff` from 0.8.4 to 0.9.4 - [Release notes](https://github.com/astral-sh/ruff/releases) - [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md) - [Commits](https://github.com/astral-sh/ruff/compare/0.8.4...0.9.4) Updates `sphinx-autodoc-typehints` from 2.5.0 to 3.0.1 - [Release notes](https://github.com/tox-dev/sphinx-autodoc-typehints/releases) - [Commits](https://github.com/tox-dev/sphinx-autodoc-typehints/compare/2.5.0...3.0.1) Updates `anyio` from 4.7.0 to 4.8.0 - [Release notes](https://github.com/agronholm/anyio/releases) - [Changelog](https://github.com/agronholm/anyio/blob/master/docs/versionhistory.rst) - [Commits](https://github.com/agronholm/anyio/compare/4.7.0...4.8.0) Updates `certifi` from 2024.12.14 to 2025.1.31 - [Commits](https://github.com/certifi/python-certifi/compare/2024.12.14...2025.01.31) Updates `executing` from 2.1.0 to 2.2.0 - [Release notes](https://github.com/alexmojaki/executing/releases) - [Commits](https://github.com/alexmojaki/executing/compare/v2.1.0...v2.2.0) Updates `filelock` from 3.16.1 to 3.17.0 - [Release notes](https://github.com/tox-dev/py-filelock/releases) - [Changelog](https://github.com/tox-dev/filelock/blob/main/docs/changelog.rst) - [Commits](https://github.com/tox-dev/py-filelock/compare/3.16.1...3.17.0) Updates `identify` from 2.6.4 to 2.6.6 - [Commits](https://github.com/pre-commit/identify/compare/v2.6.4...v2.6.6) Updates `ipython` from 8.31.0 to 8.32.0 - [Release notes](https://github.com/ipython/ipython/releases) - [Commits](https://github.com/ipython/ipython/compare/8.31.0...8.32.0) Updates `prompt-toolkit` from 3.0.48 to 3.0.50 - [Release notes](https://github.com/prompt-toolkit/python-prompt-toolkit/releases) - [Changelog](https://github.com/prompt-toolkit/python-prompt-toolkit/blob/master/CHANGELOG) - [Commits](https://github.com/prompt-toolkit/python-prompt-toolkit/compare/3.0.48...3.0.50) Updates `ruamel-yaml` from 0.18.7 to 0.18.10 Updates `starlette` from 0.45.1 to 0.45.3 - [Release notes](https://github.com/encode/starlette/releases) - [Changelog](https://github.com/encode/starlette/blob/master/docs/release-notes.md) - [Commits](https://github.com/encode/starlette/compare/0.45.1...0.45.3) Updates `virtualenv` from 20.28.0 to 20.29.1 - [Release notes](https://github.com/pypa/virtualenv/releases) - [Changelog](https://github.com/pypa/virtualenv/blob/main/docs/changelog.rst) - [Commits](https://github.com/pypa/virtualenv/compare/20.28.0...20.29.1) Updates `watchfiles` from 1.0.3 to 1.0.4 - [Release notes](https://github.com/samuelcolvin/watchfiles/releases) - [Commits](https://github.com/samuelcolvin/watchfiles/compare/v1.0.3...v1.0.4) Updates `websockets` from 14.1 to 14.2 - [Release notes](https://github.com/python-websockets/websockets/releases) - [Commits](https://github.com/python-websockets/websockets/compare/14.1...14.2) --- updated-dependencies: - dependency-name: numpy dependency-type: direct:production update-type: version-update:semver-patch dependency-group: poetry-dependencies - dependency-name: scipy dependency-type: direct:production update-type: version-update:semver-minor dependency-group: poetry-dependencies - dependency-name: biopython dependency-type: direct:production update-type: version-update:semver-minor dependency-group: poetry-dependencies - dependency-name: pygments dependency-type: direct:development update-type: version-update:semver-minor dependency-group: poetry-dependencies - dependency-name: black dependency-type: direct:development update-type: version-update:semver-major dependency-group: poetry-dependencies - dependency-name: pre-commit dependency-type: direct:development update-type: version-update:semver-minor dependency-group: poetry-dependencies - dependency-name: ruff dependency-type: direct:development update-type: version-update:semver-minor dependency-group: poetry-dependencies - dependency-name: sphinx-autodoc-typehints dependency-type: direct:development update-type: version-update:semver-major dependency-group: poetry-dependencies - dependency-name: anyio dependency-type: indirect update-type: version-update:semver-minor dependency-group: poetry-dependencies - dependency-name: certifi dependency-type: indirect update-type: version-update:semver-major dependency-group: poetry-dependencies - dependency-name: executing dependency-type: indirect update-type: version-update:semver-minor dependency-group: poetry-dependencies - dependency-name: filelock dependency-type: indirect update-type: version-update:semver-minor dependency-group: poetry-dependencies - dependency-name: identify dependency-type: indirect update-type: version-update:semver-patch dependency-group: poetry-dependencies - dependency-name: ipython dependency-type: indirect update-type: version-update:semver-minor dependency-group: poetry-dependencies - dependency-name: prompt-toolkit dependency-type: indirect update-type: version-update:semver-patch dependency-group: poetry-dependencies - dependency-name: ruamel-yaml dependency-type: indirect update-type: version-update:semver-patch dependency-group: poetry-dependencies - dependency-name: starlette dependency-type: indirect update-type: version-update:semver-patch dependency-group: poetry-dependencies - dependency-name: virtualenv dependency-type: indirect update-type: version-update:semver-minor dependency-group: poetry-dependencies - dependency-name: watchfiles dependency-type: indirect update-type: version-update:semver-patch dependency-group: poetry-dependencies - dependency-name: websockets dependency-type: indirect update-type: version-update:semver-minor dependency-group: poetry-dependencies ... Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --- poetry.lock | 715 ++++++++++++++++++++++++++-------------------------- 1 file changed, 364 insertions(+), 351 deletions(-) diff --git a/poetry.lock b/poetry.lock index 8d7bd62..b23216b 100644 --- a/poetry.lock +++ b/poetry.lock @@ -13,13 +13,13 @@ files = [ [[package]] name = "anyio" -version = "4.7.0" +version = "4.8.0" description = "High level compatibility layer for multiple asynchronous event loop implementations" optional = false python-versions = ">=3.9" files = [ - {file = "anyio-4.7.0-py3-none-any.whl", hash = "sha256:ea60c3723ab42ba6fff7e8ccb0488c898ec538ff4df1f1d5e642c3601d07e352"}, - {file = "anyio-4.7.0.tar.gz", hash = "sha256:2f834749c602966b7d456a7567cafcb309f96482b5081d14ac93ccd457f9dd48"}, + {file = "anyio-4.8.0-py3-none-any.whl", hash = "sha256:b5011f270ab5eb0abf13385f851315585cc37ef330dd88e27ec3d34d651fd47a"}, + {file = "anyio-4.8.0.tar.gz", hash = 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