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melbournebioinformatics / variant_calling_pipeline Public

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variant_calling_pipeline

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GenomeAnalysisTK

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executable file

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6 lines (4 loc) · 109 Bytes

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variant_calling_pipeline

/

GenomeAnalysisTK

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executable file

·

6 lines (4 loc) · 109 Bytes

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#!/bin/sh

mem=$1

shift

java -Xmx${mem}g -Djava.io.tmpdir=$TMPDIR -jar $GATK_HOME/GenomeAnalysisTK.jar "$@"

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