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CMakeLists.txt
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# @copyright (c) 2017-2023 King Abdullah University of Science and
# Technology (KAUST). All rights reserved.
#
# ExaGeoStat is a software package, provided by King Abdullah
# University of Science and Technology (KAUST)
#
# @file CMakeLists.txt
# @version 1.2.0
# @author Eduardo Gonzalez Fisher
# @author Sameh Abdulah
# @date 2022-11-09
###############################################################################
# THIS IS A TOP-LEVEL CMAKELISTS.txt #
# #
# It is intended to find all dependencies (required or optional) #
# and set up corresponding variables #
###############################################################################
###############################################################################
## PRELIMINARIES ##
###############################################################################
#Minimum CMAKE version.
cmake_minimum_required(VERSION 2.8.12)
# directly make an error if in-source build
if ("${CMAKE_SOURCE_DIR}" STREQUAL "${CMAKE_BINARY_DIR}")
message(FATAL_ERROR "In-source builds are not allowed.\n"
"Please create a build directory first and execute cmake configuration from "
"this directory. Example: mkdir build && cd build && cmake ..")
endif ()
project(EXAGEOSTAT C)
# set project version number
set(EXAGEOSTAT_VERSION_MAJOR 1)
set(EXAGEOSTAT_VERSION_MINOR 2)
set(EXAGEOSTAT_VERSION_PATCH 0)
#set(CHAMELEON_CMAKE_DIR "" CACHE PATH "Directory of CHAMELEON CMake modules, can be external to the project")
# CMAKE MODULES :: ECRC
# REQUIRED FOR TESTS TO LINK LIBRARIES
if (NOT EXISTS "${PROJECT_SOURCE_DIR}/cmake_modules/ecrc/modules")
find_package(Git REQUIRED)
execute_process(COMMAND ${GIT_EXECUTABLE} submodule init WORKING_DIRECTORY ${PROJECT_SOURCE_DIR} RESULT_VARIABLE _res_init OUTPUT_QUIET ERROR_QUIET)
execute_process(COMMAND ${GIT_EXECUTABLE} submodule update WORKING_DIRECTORY ${PROJECT_SOURCE_DIR} RESULT_VARIABLE _res_update OUTPUT_QUIET ERROR_QUIET)
if (${_res_init} GREATER 0 OR ${_res_update} GREATER 0)
message(FATAL_ERROR "ECRC CMake modules were not found.\n"
"We tried: 'git submodule init && git submodule update' and resulted in error")
endif ()
endif ()
# ECRC INITIALIZATION
list(APPEND CMAKE_MODULE_PATH ${PROJECT_SOURCE_DIR}/cmake_modules)
list(APPEND CMAKE_MODULE_PATH "${PROJECT_SOURCE_DIR}/cmake_modules/ecrc/modules")
list(APPEND CMAKE_MODULE_PATH "${PROJECT_SOURCE_DIR}/cmake_modules/dependencies/modules/import")
set(ECRC_CMAKE_MODULE_PATH ${PROJECT_SOURCE_DIR}/cmake_modules/ecrc/modules)
set(ECRC_INSTALLATION_SCRIPTS_PATH ${PROJECT_SOURCE_DIR}/cmake_modules/dependencies/scripts)
include(EcrcInit)
include(GenPkgConfig)
set(EXAGEOSTAT_VERSION ${EXAGEOSTAT_VERSION_MAJOR}.${EXAGEOSTAT_VERSION_MINOR}.${EXAGEOSTAT_VERSION_PATCH})
add_definitions("-DVERSION=${EXAGEOSTAT_VERSION}")
include(FindPkgConfig)
find_package(PkgConfig QUIET)
#############################################
# #
# Compilation of EXAGEOSTAT #
# #
#############################################
###############################################################################
# Parameters/Options #
######################
# Set the RPATH config
# --------------------
# use, i.e. don't skip the full RPATH for the build tree
set(CMAKE_SKIP_BUILD_RPATH FALSE)
# when building, don't use the install RPATH already
# (but later on when installing)
set(CMAKE_BUILD_WITH_INSTALL_RPATH FALSE)
# the RPATH to be used when installing
list(APPEND CMAKE_INSTALL_RPATH "${CMAKE_INSTALL_PREFIX}/lib")
# Misc options
# ------------
option(BUILD_SHARED_LIBS "Build shared libraries" OFF)
option(EXAGEOSTAT_EXAMPLES "Build ExaGeoStat Examples" ON)
# Define precision supported by EXAGEOSTAT
# -----------------------------------------
set(RP_EXAGEOSTAT_DICTIONNARY ${PROJECT_SOURCE_DIR}/cmake_modules/ecrc/modules/precision_generator/subs.py)
set(RP_EXAGEOSTAT_PRECISIONS "s;d;c;z")
include(RulesPrecisions)
# Install Dependencies for EXAGEOSTAT
# ------------------------------------
if (EXAGEOSTAT_INSTALL_DEPS)
if (NOT DEFINED TMP_DIR)
string(RANDOM LENGTH 24 _s)
set(TMP_DIR ${CMAKE_CURRENT_BINARY_DIR}/${_s})
execute_process(COMMAND mkdir -p ${TMP_DIR} RESULT_VARIABLE res)
endif ()
include(ImportDeps)
endif ()
# Create a list of possible runtime
set(EXAGEOSTAT_SCHED_list "STARPU" "QUARK")
# Initially StarPU runtime is enabled
option(EXAGEOSTAT_SCHED_STARPU
"Enable StarPU scheduler as the default runtime
(Conflict with other EXAGEOSTAT_SCHED_* options)" ON)
option(EXAGEOSTAT_SCHED_QUARK
"Enable Quark scheduler as the default runtime
(Conflict with other EXAGEOSTAT_SCHED_* options)" OFF)
# For now, we are able to compile only one runtime at a time, so we disable combinations of runtimes
if (EXAGEOSTAT_SCHED_STARPU)
set(EXAGEOSTAT_SCHED_QUARK OFF)
elseif (EXAGEOSTAT_SCHED_QUARK)
set(EXAGEOSTAT_SCHED_STARPU OFF)
endif ()
# Set default to StarPU if nothing specific is required by the user
if (NOT EXAGEOSTAT_SCHED_STARPU AND NOT EXAGEOSTAT_SCHED_QUARK)
set(EXAGEOSTAT_SCHED_STARPU ON)
endif ()
if (EXAGEOSTAT_SCHED_STARPU)
message("-- ${BoldGreen}EXAGEOSTAT_SCHED_STARPU is set to ON: EXAGEOSTAT uses StarPU runtime\n"
" To use EXAGEOSTAT with Quark runtime: set EXAGEOSTAT_SCHED_QUARK to ON\n"
" (EXAGEOSTAT_SCHED_STARPU will be disabled)${ColourReset}")
elseif (EXAGEOSTAT_SCHED_QUARK)
message("-- ${BoldGreen}EXAGEOSTAT_SCHED_QUARK is set to ON: EXAGEOSTAT uses Quark runtime\n"
" To use EXAGEOSTAT with StarPU runtime: set EXAGEOSTAT_SCHED_STARPU to ON\n"
" (EXAGEOSTAT_SCHED_QUARK will be disabled)${ColourReset}")
endif ()
# Check that one, and only one, SCHED option is set to ON
# count number of runtime sets to ON
math(EXPR number_of_active_runtime 0)
foreach (runtime ${EXAGEOSTAT_SCHED_list})
if (EXAGEOSTAT_SCHED_${runtime})
math(EXPR number_of_active_runtime "${number_of_active_runtime}+1")
endif ()
endforeach ()
if (NOT number_of_active_runtime STREQUAL 1)
message(FATAL_ERROR
"Number of active runtime is ${number_of_active_runtime}, "
"the user should activate one (and only one) runtime. ")
endif ()
# Warning if not coherent options
if (EXAGEOSTAT_USE_MPI AND NOT EXAGEOSTAT_SCHED_STARPU)
message(WARNING "You have activated MPI but EXAGEOSTAT_SCHED_STARPU is OFF.\n"
"You should use StarPU Runtime system if you want to benefit from MPI.\n"
"Use -DEXAGEOSTAT_SCHED_QUARK=OFF -DEXAGEOSTAT_SCHED_STARPU=ON at cmake \n"
"configure to do so.")
endif ()
# Additional options
# ------------------
# Enable the distributed interface (allowed only when StarPU is enabled)
cmake_dependent_option(EXAGEOSTAT_USE_MPI
"Enable distributed memory through MPI" OFF
"EXAGEOSTAT_SCHED_STARPU" OFF)
if (NOT EXAGEOSTAT_USE_MPI)
message("-- ${BoldGreen}EXAGEOSTAT_USE_MPI is set to OFF, turn it ON to use MPI (only with StarPU)${ColourReset}")
endif ()
# Enable NETCDF support
if (NOT EXAGEOSTAT_USE_NETCDF)
message("-- ${BoldGreen}EXAGEOSTAT_USE_NETCDF is set to OFF, turn it ON to enable NetCDF support${ColourReset}")
endif ()
# Use intermediate variable since cmake_dependent_option doesn't have OR conditions
set(EXAGEOSTAT_ENABLE_MPI OFF CACHE INTERNAL "Tells if MPI might be supported by the runtime")
if (EXAGEOSTAT_SCHED_STARPU)
set(EXAGEOSTAT_ENABLE_MPI ON FORCE)
endif ()
###############################################################################
# Look for dependencies #
#########################
set(EXAGEOSTAT_DEP "")
# Check for Thread library
# ------------------------
set(CMAKE_THREAD_PREFER_PTHREAD TRUE)
find_package(Threads REQUIRED)
if (THREADS_FOUND)
list(APPEND EXTRA_LIBRARIES ${CMAKE_THREAD_LIBS_INIT})
endif ()
# Add math library to the list of extra
# it normally exists on all common systems provided with a C compiler
set(M_LIBRARIES "")
if (UNIX OR WIN32)
find_library(
M_m_LIBRARY
NAMES m
)
mark_as_advanced(M_m_LIBRARY)
if (M_m_LIBRARY)
list(APPEND M_LIBRARIES "${M_m_LIBRARY}")
list(APPEND EXTRA_LIBRARIES "${M_m_LIBRARY}")
else ()
message(FATAL_ERROR "Could NOT find libm on your system."
" Are you sure to a have a C compiler installed?")
endif ()
endif ()
# Try to find librt (libposix4 - POSIX.1b Realtime Extensions library)
# on Unix systems except Apple ones because it does not exist on it
set(RT_LIBRARIES "")
if (UNIX AND NOT APPLE)
find_library(
RT_rt_LIBRARY
NAMES rt
)
mark_as_advanced(RT_rt_LIBRARY)
if (RT_rt_LIBRARY)
list(APPEND RT_LIBRARIES "${RT_rt_LIBRARY}")
list(APPEND EXTRA_LIBRARIES "${RT_rt_LIBRARY}")
else ()
message(FATAL_ERROR "Could NOT find librt on your system")
endif ()
endif ()
# EXAGEOSTAT depends on CBLAS
#---------------------------
find_package(CBLAS COMPONENTS BLASEXT)
if (BLAS_FOUND)
if (BLAS_LIBRARY_DIRS)
# the RPATH to be used when installing
list(APPEND CMAKE_INSTALL_RPATH "${BLAS_LIBRARY_DIRS}")
endif ()
if (BLAS_LINKER_FLAGS)
list(APPEND CMAKE_EXE_LINKER_FLAGS "${BLAS_LINKER_FLAGS}")
endif ()
else ()
message(FATAL_ERROR "BLAS library has not been found")
endif ()
if (CBLAS_FOUND)
include_directories(${CBLAS_INCLUDE_DIRS})
if (CBLAS_LIBRARY_DIRS)
# the RPATH to be used when installing
list(APPEND CMAKE_INSTALL_RPATH "${CBLAS_LIBRARY_DIRS}")
endif ()
if (CBLAS_LIBRARIES)
if (CBLAS_LIBRARIES_DEP)
list(INSERT EXAGEOSTAT_DEP 0 ${CBLAS_LIBRARIES_DEP})
else ()
list(INSERT EXAGEOSTAT_DEP 0 ${CBLAS_LIBRARIES})
endif ()
endif ()
else ()
if (ECRC_VERBOSE_FIND_PACKAGE)
if (CBLAS_STANDALONE OR NOT CBLAS_WORKS)
if (NOT CBLAS_cblas.h_DIRS)
Print_Find_Header_Status(cblas cblas.h)
endif ()
if (NOT CBLAS_cblas_LIBRARY)
Print_Find_Library_Status(cblas libcblas)
endif ()
endif ()
else ()
message(WARNING "CBLAS library has not been found and ECRC_VERBOSE_FIND_PACKAGE is set to OFF."
" Try to activate ECRC_VERBOSE_FIND_PACKAGE option (-DECRC_VERBOSE_FIND_PACKAGE=ON) to get some hints for the detection")
endif ()
message(FATAL_ERROR "A CBLAS library is required but has not been found")
endif ()
# EXAGEOSTAT depends on LAPACKE
#-----------------------------
# standalone version of lapacke seems useless for now
# let the comment in case we meet some problems of non existing lapacke
# functions in lapack library such as mkl, acml, ...
#set(LAPACKE_STANDALONE TRUE)
find_package(LAPACKE COMPONENTS LAPACKEXT)
if (LAPACK_FOUND AND LAPACK_LIBRARY_DIRS)
# the RPATH to be used when installing
list(APPEND CMAKE_INSTALL_RPATH "${LAPACK_LIBRARY_DIRS}")
else ()
message(FATAL_ERROR "A LAPACK library is required but has not been found")
endif ()
if (LAPACKE_FOUND)
include_directories(${LAPACKE_INCLUDE_DIRS})
if (LAPACKE_LIBRARY_DIRS)
# the RPATH to be used when installing
list(APPEND CMAKE_INSTALL_RPATH "${LAPACKE_LIBRARY_DIRS}")
endif ()
if (LAPACKE_LIBRARIES)
if (LAPACKE_LIBRARIES_DEP)
list(INSERT EXAGEOSTAT_DEP 0 ${LAPACKE_LIBRARIES_DEP})
else ()
list(INSERT EXAGEOSTAT_DEP 0 ${LAPACKE_LIBRARIES})
endif ()
endif ()
else ()
if (ECRC_VERBOSE_FIND_PACKAGE)
if (LAPACKE_STANDALONE OR NOT LAPACKE_WORKS)
if (NOT LAPACKE_lapacke.h_DIRS)
Print_Find_Header_Status(lapacke lapacke.h)
endif ()
if (NOT LAPACKE_lapacke_LIBRARY)
Print_Find_Library_Status(lapacke liblapacke)
endif ()
endif ()
else ()
message(WARNING "LAPACKE library has not been found and ECRC_VERBOSE_FIND_PACKAGE is set to OFF."
" Try to activate ECRC_VERBOSE_FIND_PACKAGE option (-DECRC_VERBOSE_FIND_PACKAGE=ON) to get some hints for the detection")
endif ()
message(FATAL_ERROR "A LAPACKE library is required but has not been found")
endif ()
# EXAGEOSTAT depends on GPU
#-------------------------
if (EXAGEOSTAT_USE_CUDA)
find_package(CUDA REQUIRED)
add_definitions(-DEXAGEOSTAT_USE_CUDA)
endif ()
# EXAGEOSTAT depends on MPI
#-------------------------
if (EXAGEOSTAT_USE_MPI)
# allows to use an external mpi compilation by setting compilers with
# -DMPI_C_COMPILER=path/to/mpicc -DMPI_Fortran_COMPILER=path/to/mpif90
# at cmake configure
if (NOT MPI_C_COMPILER)
set(MPI_C_COMPILER mpicc)
endif ()
find_package(MPI REQUIRED)
if (MPI_C_FOUND)
message("-- ${Blue}Add definition EXAGEOSTAT_USE_MPI"
" - Activate MPI in ExaGeoStat${ColourReset}")
set(EXAGEOSTAT_USE_MPI ON)
list(APPEND EXTRA_LIBRARIES ${MPI_C_LIBRARIES})
include_directories(${MPI_C_INCLUDE_PATH})
# tests for intel mpi
#list(APPEND MPI_C_COMPILE_FLAGS "-mt_mpi")
#list(APPEND MPI_COMPILE_FLAGS "-mt_mpi")
if (MPI_C_LINK_FLAGS)
if(LAPACKE_LINKER_FLAGS)
list(APPEND CMAKE_EXE_LINKER_FLAGS "${LAPACKE_LINKER_FLAGS}")
endif()
list(APPEND CMAKE_EXE_LINKER_FLAGS "${MPI_C_LINK_FLAGS}")
endif ()
endif (MPI_C_FOUND)
endif (EXAGEOSTAT_USE_MPI)
# EXAGEOSTAT depends on netcdf
# -------------------------------
if (EXAGEOSTAT_USE_NETCDF)
message("")
message("---------------------------------------- NETCDF")
pkg_search_module(NETCDF netcdf)
if (NOT NETCDF_FOUND)
message("")
message(STATUS "Can't find NetCDF using PkgConfig, Installing it instead.")
include(ImportNetCDF)
if(NOT NETCDF_INSTALLED)
message(FATAL_ERROR "NetCDF Installation failed")
endif()
message(STATUS "Now trying to find netCDF")
endif()
pkg_search_module(NETCDF netcdf)
if (NETCDF_FOUND)
add_definitions(-DEXAGEOSTAT_USE_NETCDF)
include_directories(${NETCDF_INCLUDE_DIRS})
link_directories(${NETCDF_LIBRARY_DIRS})
list(INSERT EXAGEOSTAT_DEP 0 ${NETCDF_LIBRARIES})
message(STATUS "NETCDF ${NETCDF_VERSION} found")
endif ()
message(STATUS "NetCDF Done")
endif ()
# EXAGEOSTAT depends on NLOPT
# -------------------------------
# Check if NLOPT is available to build wrappers
message("")
message("---------------------------------------- NLOPT")
find_package(NLOPT 2.4.2 QUIET)
if (NOT NLOPT_FOUND)
message("")
message(STATUS "Can't find NLOPT using PkgConfig, Installing it ..")
include(ImportNLOPT)
if(NOT NLOPT_INSTALLED)
message(FATAL_ERROR "NLOPT Installation failed")
endif()
message(STATUS "Now trying to find NLOPT")
endif()
#pkg_search_module(NETCDF netcdf REQUIRED)
find_package(NLOPT 2.4.2 QUIET REQUIRED)
if (NLOPT_FOUND)
include_directories(${NLOPT_INCLUDE_DIRS})
link_directories(${NLOPT_LIBRARY_DIRS})
list(INSERT EXAGEOSTAT_DEP 0 ${NLOPT_LIBRARIES})
message(STATUS "NLOPT ${NLOPT_VERSION} found")
else ()
message("NLOPT is NOT found, skipping it")
set(NLOPT OFF)
endif ()
# EXAGEOSTAT depends on STARSH
# -------------------------------
if (EXAGEOSTAT_USE_STARSH)
message("")
message("---------------------------------------- Stars-H")
find_package(STARSH)
if (NOT STARSH_FOUND)
message("")
message(STATUS "Can't find STARSH using PkgConfig, Installing it through HiCMA")
include(ImportHiCMA)
if(NOT HiCMA_INSTALLED)
message(FATAL_ERROR "HiCMA Installation failed")
endif()
message(STATUS "Now trying to find STARSH")
endif()
find_package(STARSH REQUIRED)
if (STARSH_FOUND)
include_directories(${STARSH_INCLUDE_DIRS_DEP})
if (STARSH_LINKER_FLAGS)
list(APPEND CMAKE_EXE_LINKER_FLAGS "${STARSH_LINKER_FLAGS}")
endif ()
if (STARSH_LIBRARY_DIRS)
# the RPATH to be used when installing
list(APPEND CMAKE_INSTALL_RPATH "${STARSH_LIBRARY_DIRS}")
endif ()
if (STARSH_LIBRARIES)
# look for gsl
find_library(_STARSH_LIB NAME starsh PATHS ${STARSH_LIBRARY_DIRS})
if (_STARSH_LIB AND NOT "${STARSH_LIBRARIES_DEP}" MATCHES "gsl")
execute_process(COMMAND nm ${_STARSH_LIB} COMMAND grep gsl RESULT_VARIABLE GSL_IN_STARSH)
if (${GSL_IN_STARSH} EQUAL 0)
message(STATUS "STARSH depends on gsl. Adding it to dependency list")
if (STARSH_LIBRARIES_DEP)
list(APPEND STARSH_LIBRARIES_DEP "gsl")
else ()
list(APPEND STARSH_LIBRARIES "gsl")
endif ()
endif ()
endif ()
# insert to dependencies
if (STARSH_LIBRARIES_DEP)
list(INSERT EXAGEOSTAT_DEP 0 ${STARSH_LIBRARIES_DEP})
else ()
list(INSERT EXAGEOSTAT_DEP 0 ${STARSH_LIBRARIES})
endif ()
endif ()
endif()
message(STATUS "StarsH Done")
endif ()
# EXAGEOSTAT depends on HICMA
# -------------------------------
if (EXAGEOSTAT_USE_HICMA)
message("")
message("---------------------------------------- Hicma")
find_package(HICMA REQUIRED)
if (HICMA_FOUND)
include_directories(${HICMA_INCLUDE_DIRS_DEP})
add_definitions(-DEXAGEOSTAT_USE_HICMA)
if (HICMA_LINKER_FLAGS)
list(APPEND CMAKE_EXE_LINKER_FLAGS "${HICMA_LINKER_FLAGS}")
endif ()
if (HICMA_LIBRARY_DIRS)
# The RPATH to be used when installing
list(APPEND CMAKE_INSTALL_RPATH "${HICMA_LIBRARY_DIRS}")
link_directories(${HICMA_LIBRARY_DIRS})
endif ()
# Insert to dependencies
if (HICMA_LIBRARIES_DEP)
list(INSERT EXAGEOSTAT_DEP 0 ${HICMA_LIBRARIES_DEP})
else ()
list(INSERT EXAGEOSTAT_DEP 0 ${HICMA_LIBRARIES})
endif ()
message(STATUS "Hicma Done")
endif ()
endif()
# EXAGEOSTAT depends on a runtime
# -------------------------------
set(EXAGEOSTAT_STARPU_VERSION "1.2" CACHE STRING "STARPU version desired")
# create list of components in order to make a single call to find_package(starpu...)
if (NOT EXAGEOSTAT_SIMULATION)
set(STARPU_COMPONENT_LIST "HWLOC")
else ()
set(STARPU_COMPONENT_LIST "SIMGRID")
endif ()
if (EXAGEOSTAT_USE_MPI)
list(APPEND STARPU_COMPONENT_LIST "MPI")
endif ()
if (EXAGEOSTAT_ENABLE_TRACING)
list(APPEND STARPU_COMPONENT_LIST "FXT")
endif ()
find_package(STARPU ${EXAGEOSTAT_STARPU_VERSION} REQUIRED
COMPONENTS ${STARPU_COMPONENT_LIST})
# Add definition and include_dir if found
if (STARPU_FOUND)
message("-- ${Blue}Add definition EXAGEOSTAT_SCHED_STARPU"
" - Activate StarPU in ExaGeoStat${ColourReset}")
set(EXAGEOSTAT_SCHED_STARPU 1)
include_directories(${STARPU_INCLUDE_DIRS_DEP})
if (STARPU_LINKER_FLAGS)
list(APPEND CMAKE_EXE_LINKER_FLAGS "${STARPU_LINKER_FLAGS}")
endif ()
set(CMAKE_REQUIRED_INCLUDES "${STARPU_INCLUDE_DIRS_DEP}")
foreach (libdir ${STARPU_LIBRARY_DIRS_DEP})
list(APPEND CMAKE_REQUIRED_FLAGS "-L${libdir}")
endforeach ()
set(CMAKE_REQUIRED_LIBRARIES "${STARPU_LIBRARIES_DEP}")
if (EXAGEOSTAT_USE_MPI)
list(APPEND CMAKE_REQUIRED_INCLUDES "${MPI_C_INCLUDE_PATH}")
list(APPEND CMAKE_REQUIRED_FLAGS "${MPI_C_LINK_FLAGS}")
list(APPEND CMAKE_REQUIRED_LIBRARIES "${MPI_C_LIBRARIES}")
endif ()
if (EXAGEOSTAT_SIMULATION)
list(APPEND CMAKE_REQUIRED_FLAGS "-include" "starpu_simgrid_wrap.h")
endif ()
string(REPLACE ";" " " CMAKE_REQUIRED_FLAGS "${CMAKE_REQUIRED_FLAGS}")
check_function_exists(starpu_data_idle_prefetch_on_node STARPU_IDLE_PREFETCH_FOUND)
if (STARPU_IDLE_PREFETCH_FOUND)
set(HAVE_STARPU_IDLE_PREFETCH 1)
message("-- ${Blue}Add definition HAVE_STARPU_IDLE_PREFETCH${ColourReset}")
endif ()
check_function_exists(starpu_iteration_push STARPU_ITERATION_PUSH_FOUND)
if (STARPU_ITERATION_PUSH_FOUND)
set(HAVE_STARPU_ITERATION_PUSH 1)
message("-- ${Blue}Add definition HAVE_STARPU_ITERATION_PUSH${ColourReset}")
endif ()
check_function_exists(starpu_data_wont_use STARPU_DATA_WONT_USE_FOUND)
if (STARPU_DATA_WONT_USE_FOUND)
set(HAVE_STARPU_DATA_WONT_USE 1)
message("-- ${Blue}Add definition HAVE_STARPU_DATA_WONT_USE${ColourReset}")
endif ()
check_function_exists(starpu_data_set_coordinates STARPU_DATA_SET_COORDINATES_FOUND)
if (STARPU_DATA_SET_COORDINATES_FOUND)
set(HAVE_STARPU_DATA_SET_COORDINATES 1)
message("-- ${Blue}Add definition HAVE_STARPU_DATA_SET_COORDINATES${ColourReset}")
endif ()
check_function_exists(starpu_malloc_on_node_set_default_flags STARPU_MALLOC_ON_NODE_SET_DEFAULT_FLAGS)
if (STARPU_MALLOC_ON_NODE_SET_DEFAULT_FLAGS)
set(HAVE_STARPU_MALLOC_ON_NODE_SET_DEFAULT_FLAGS 1)
message("-- ${Blue}Add definition HAVE_STARPU_MALLOC_ON_NODE_SET_DEFAULT_FLAGS${ColourReset}")
endif ()
if (EXAGEOSTAT_ENABLE_TRACING)
# check if fxt profiling is accessible in starpu and activate it in exageostat
unset(STARPU_FXT_START_PROFILING_FOUND CACHE)
check_function_exists(starpu_fxt_start_profiling STARPU_FXT_START_PROFILING_FOUND)
if (STARPU_FXT_START_PROFILING_FOUND)
message("-- ${Blue}Add definition HAVE_STARPU_FXT_PROFILING"
" - Activate FxT profiling through StarPU${ColourReset}")
set(HAVE_STARPU_FXT_PROFILING 1)
else ()
message("-- ${Red}Looking for starpu with fxt"
" - starpu_fxt_start_profiling() test fails in StarPU${ColourReset}")
message("-- ${Red}Check in CMakeFiles/CMakeError.log to figure out why it fails${ColourReset}")
endif ()
endif ()
if (EXAGEOSTAT_USE_MPI)
# Check if a specific function exist
unset(STARPU_MPI_DATA_REGISTER_FOUND CACHE)
check_function_exists(starpu_mpi_data_register_comm STARPU_MPI_DATA_REGISTER_FOUND)
if (STARPU_MPI_DATA_REGISTER_FOUND)
message("-- ${Blue}Add definition HAVE_STARPU_MPI_DATA_REGISTER - Activate"
" use of starpu_mpi_data_register() in ExaGeoStat with StarPU${ColourReset}")
set(HAVE_STARPU_MPI_DATA_REGISTER 1)
else ()
message("-- ${Red}Looking for starpu with starpu_mpi_data_register"
" - starpu_mpi_data_register() test fails in StarPU${ColourReset}")
message("-- ${Red}Check in CMakeFiles/CMakeError.log to figure out why it fails${ColourReset}")
endif ()
unset(STARPU_MPI_COMM_RANK_FOUND CACHE)
check_function_exists(starpu_mpi_comm_rank STARPU_MPI_COMM_RANK_FOUND)
if (STARPU_MPI_COMM_RANK_FOUND)
message("-- ${Blue}Add definition HAVE_STARPU_MPI_COMM_RANK - Activate"
" use of starpu_mpi_comm_rank() in ExaGeoStat with StarPU${ColourReset}")
set(HAVE_STARPU_MPI_COMM_RANK 1)
else ()
message("-- ${Red}Looking for starpu with starpu_mpi_comm_rank"
" - starpu_mpi_comm_rank() test fails in StarPU${ColourReset}")
message("-- ${Red}Check in CMakeFiles/CMakeError.log to figure out why it fails${ColourReset}")
endif ()
check_function_exists(starpu_mpi_cached_receive STARPU_MPI_CACHED_RECEIVE)
if (STARPU_MPI_CACHED_RECEIVE)
set(HAVE_STARPU_MPI_CACHED_RECEIVE 1)
message("-- ${Blue}Add definition HAVE_STARPU_MPI_CACHED_RECEIVE${ColourReset}")
endif ()
endif ()
if (HWLOC_FOUND AND HWLOC_LIBRARY_DIRS)
# the RPATH to be used when installing
list(APPEND CMAKE_INSTALL_RPATH "${HWLOC_LIBRARY_DIRS}")
endif ()
if (FXT_FOUND AND FXT_LIBRARY_DIRS)
# the RPATH to be used when installing
list(APPEND CMAKE_INSTALL_RPATH "${FXT_LIBRARY_DIRS}")
endif ()
if (SIMGRID_FOUND AND SIMGRID_LIBRARY_DIRS)
# the RPATH to be used when installing
list(APPEND CMAKE_INSTALL_RPATH "${SIMGRID_LIBRARY_DIRS}")
endif ()
if (STARPU_FOUND AND STARPU_LIBRARY_DIRS)
# the RPATH to be used when installing
list(APPEND CMAKE_INSTALL_RPATH "${STARPU_LIBRARY_DIRS}")
endif ()
if (STARPU_LIBRARIES)
if (STARPU_LIBRARIES_DEP)
list(INSERT EXAGEOSTAT_DEP 0 ${STARPU_LIBRARIES_DEP})
else ()
list(INSERT EXAGEOSTAT_DEP 0 ${STARPU_LIBRARIES})
endif ()
endif ()
endif (STARPU_FOUND)
# EXAGEOSTAT depends on CHAMELEON
# -------------------------------
set(EXAGEOSTAT_USE_CHAMELEON 1) #Should be enabled
if (EXAGEOSTAT_USE_CHAMELEON)
message("")
message("---------------------------------------- Chameleon")
find_package(CHAMELEON)
if (NOT CHAMELEON_FOUND)
message("")
message(STATUS "Can't find CHAMELEON using PkgConfig, Installing it instead.")
include(ImportChameleon)
if(NOT CHAMELEON_INSTALLED)
message(FATAL_ERROR "CHAMELEON Installation failed")
endif()
message(STATUS "Now trying to find Chameleon")
endif()
find_package(CHAMELEON REQUIRED)
if(CHAMELEON_FOUND)
include_directories(AFTER ${CHAMELEON_INCLUDE_DIRS_DEP})
include_directories(AFTER ${CHAMELEON_DIR_FOUND}/include/coreblas)
if (CHAMELEON_LINKER_FLAGS)
list(APPEND CMAKE_EXE_LINKER_FLAGS "${CHAMELEON_LINKER_FLAGS}")
endif ()
if (CHAMELEON_LIBRARY_DIRS)
# the RPATH to be used when installing
list(APPEND CMAKE_INSTALL_RPATH "${CHAMELEON_LIBRARY_DIRS}")
endif ()
if (CHAMELEON_LIBRARIES)
if (CHAMELEON_LIBRARIES_DEP)
list(INSERT EXAGEOSTAT_DEP 0 ${CHAMELEON_LIBRARIES_DEP})
else ()
list(INSERT EXAGEOSTAT_DEP 0 ${CHAMELEON_LIBRARIES})
endif ()
endif ()
endif()
message(STATUS "Chameleon Done")
endif ()
list(REMOVE_DUPLICATES CMAKE_EXE_LINKER_FLAGS)
string(REPLACE ";" " " CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS}")
# Fix a problem on Mac OS X when building shared libraries
if (${CMAKE_SYSTEM_NAME} MATCHES "Darwin")
set(CMAKE_SHARED_LINKER_FLAGS "-undefined dynamic_lookup")
endif ()
#------------------------------------------------------------------------------
if (EXAGEOSTAT_SCHED_STARPU)
link_directories(${STARPU_LIBRARY_DIRS_DEP})
elseif (EXAGEOSTAT_SCHED_QUARK)
link_directories(${QUARK_LIBRARY_DIRS})
endif ()
# Save extra dependencies (all required links)
list(APPEND EXAGEOSTAT_DEP ${EXTRA_LIBRARIES})
list(REMOVE_DUPLICATES EXAGEOSTAT_DEP) # WARNING: is it safe, respect order?
# Check for the subdirectories
# ----------------------------
# include headers
# ---------------
include_directories(${CMAKE_SOURCE_DIR})
include_directories(${CMAKE_SOURCE_DIR}/include)
include_directories(${CMAKE_SOURCE_DIR}/misc/include)
include_directories(${CMAKE_SOURCE_DIR}/exageostat_exact/src/include)
include_directories(${CMAKE_SOURCE_DIR}/exageostat_approx/src/include)
include_directories(${CMAKE_SOURCE_DIR}/exageostat_exact/cpu_core/include)
include_directories(${CMAKE_SOURCE_DIR}/exageostat_exact/runtime/starpu/include)
include_directories(${CMAKE_SOURCE_DIR}/exageostat_approx/runtime/starpu/include)
set(EXAGEOSTAT_CHAMELEON_SRC "")
set(EXAGEOSTAT_SRC "")
set(EXAGEOSTAT_SRC ${CMAKE_CURRENT_SOURCE_DIR}/src/compute/MLE.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/cpu_core/compute/core_zmdet.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/cpu_core/compute/core_zzcpy.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/cpu_core/compute/core_zcmg.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/cpu_core/compute/core_zcmg_non_stat.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/cpu_core/compute/core_zcmg_nuggets.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/cpu_core/compute/core_zprint.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/cpu_core/compute/core_zdotp.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/cpu_core/compute/core_sdconv.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/cpu_core/compute/core_dsconv.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/cpu_core/compute/core_slag2d.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/cpu_core/compute/core_dlag2s.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/cpu_core/compute/core_g_to_ng.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/cpu_core/compute/core_ng_loglike.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/cpu_core/compute/core_ng_transform.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/cpu_core/compute/core_ztrace.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/runtime/starpu/codelets/codelet_zdotp.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/runtime/starpu/codelets/codelet_zmdet.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/runtime/starpu/codelets/codelet_ztrace.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/runtime/starpu/codelets/codelet_zmse.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/runtime/starpu/codelets/codelet_zmse_bivariate.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/runtime/starpu/codelets/codelet_zmse_trivariate.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/runtime/starpu/codelets/codelet_zcmg.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/runtime/starpu/codelets/codelet_zzcpy.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/runtime/starpu/codelets/codelet_zgemv.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_approx/runtime/starpu/codelets/codelet_dcmg_diag.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_approx/runtime/starpu/codelets/codelet_dpotrf_diag.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/runtime/starpu/codelets/codelet_sdconv.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/runtime/starpu/codelets/codelet_exageostat_sgemm.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/runtime/starpu/codelets/codelet_exageostat_strsm.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/runtime/starpu/codelets/codelet_dsconv.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/runtime/starpu/codelets/codelet_sdmat_reg.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/runtime/starpu/codelets/codelet_zmloe_mmom.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/runtime/starpu/codelets/codelet_stride_vec.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/runtime/starpu/codelets/codelet_ng_transform.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/runtime/starpu/codelets/codelet_ng_loglike.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/runtime/starpu/codelets/codelet_g_to_ng.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/runtime/starpu/codelets/codelet_zcorr.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/runtime/starpu/codelets/codelet_tristride_vec.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/runtime/starpu/control/exact_runtime_descriptor.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_approx/src/compute/pdpotrf_diag.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_approx/src/compute/dpotrf_diag.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_approx/src/compute/MLE_approx.c
${CMAKE_CURRENT_SOURCE_DIR}/misc/compute/MLE_misc.c
${CMAKE_CURRENT_SOURCE_DIR}/misc/compute/flat_file.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/src/compute/MLE_dexact.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/src/compute/MLE_sexact.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/src/compute/MLE_ng_dexact.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/src/compute/MLE_sdexact.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/src/compute/psdportf.c
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/src/compute/sdpotrf.c
${CMAKE_CURRENT_SOURCE_DIR}/r-wrappers/compute/rwrappers.c
)
if (EXAGEOSTAT_USE_HICMA)
list(APPEND EXAGEOSTAT_SRC ${CMAKE_CURRENT_SOURCE_DIR}/exageostat_approx/src/compute/MLE_lr.c)
list(APPEND EXAGEOSTAT_SRC ${CMAKE_CURRENT_SOURCE_DIR}/exageostat_approx/src/compute/MLE_ng_lr.c)
list(APPEND EXAGEOSTAT_SRC ${CMAKE_CURRENT_SOURCE_DIR}/exageostat_approx/runtime/starpu/codelets/codelet_hicma_dmdet.c)
list(APPEND EXAGEOSTAT_SRC ${CMAKE_CURRENT_SOURCE_DIR}/exageostat_approx/runtime/starpu/codelets/codelet_hicma_ng_transform.c)
list(APPEND EXAGEOSTAT_SRC ${CMAKE_CURRENT_SOURCE_DIR}/exageostat_approx/runtime/starpu/codelets/codelet_hicma_ng_loglike.c)
endif ()
if (EXAGEOSTAT_USE_CUDA)
message(WARNING "USING CUDA")
list(APPEND EXAGEOSTAT_SRC exageostat_exact/cuda_core/compute/cuda_conv.cu)
list(APPEND EXAGEOSTAT_SRC exageostat_exact/cuda_core/compute/cuda_zcmg.cu)
endif ()
if (EXAGEOSTAT_USE_NETCDF)
list(APPEND EXAGEOSTAT_SRC ${CMAKE_CURRENT_SOURCE_DIR}/misc/compute/nc_file.c)
endif ()
set(INSTALL_HEADERS ${CMAKE_SOURCE_DIR}/src/include/MLE.h
${CMAKE_SOURCE_DIR}/include/context.h
${CMAKE_SOURCE_DIR}/include/descriptor.h
${CMAKE_SOURCE_DIR}/include/auxiliary.h
${CMAKE_SOURCE_DIR}/include/chameleon_starpu.h
${CMAKE_SOURCE_DIR}/include/common.h
${CMAKE_SOURCE_DIR}/include/global.h
${CMAKE_SOURCE_DIR}/include/compute_d.h
${CMAKE_SOURCE_DIR}/include/async.h
${CMAKE_SOURCE_DIR}/exageostat_exact/src/include/MLE_exact.h
${CMAKE_SOURCE_DIR}/exageostat_exact/src/include/MLE_exact_s.h
${CMAKE_SOURCE_DIR}/exageostat_exact/src/include/MLE_sdexact.h
${CMAKE_SOURCE_DIR}/exageostat_exact/src/include/MLE_ng_exact.h
${CMAKE_SOURCE_DIR}/exageostat_exact/runtime/starpu/include/starpu_exageostat.h
${CMAKE_SOURCE_DIR}/exageostat_exact/cpu_core/include/exageostatcore.h
${CMAKE_SOURCE_DIR}/exageostat_approx/src/include/MLE_approx.h
${CMAKE_SOURCE_DIR}/exageostat_approx/runtime/starpu/include/starpu_exageostat_approx.h
${CMAKE_SOURCE_DIR}/misc/include/MLE_misc.h
${CMAKE_SOURCE_DIR}/misc/include/flat_file.h
${CMAKE_CURRENT_SOURCE_DIR}/r-wrappers/include/rwrappers.h
${CMAKE_SOURCE_DIR}/include/flops.h
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_approx/src/include/diag.h
${CMAKE_CURRENT_SOURCE_DIR}/exageostat_exact/src/include/mixed_prec.h
)
if (EXAGEOSTAT_USE_HICMA)
list(APPEND INSTALL_HEADERS ${CMAKE_SOURCE_DIR}/exageostat_approx/src/include/MLE_lr.h)
endif ()
if (EXAGEOSTAT_USE_CUDA)
list(APPEND INSTALL_HEADERS ${CMAKE_SOURCE_DIR}/exageostat_exact/cuda_core/include/exageostatcudacore.h)
endif ()
if (EXAGEOSTAT_USE_NETCDF)
list(APPEND INSTALL_HEADERS ${CMAKE_SOURCE_DIR}/misc/include/nc_file.h)
endif ()
link_directories(${STARSH_LIBRARY_DIRS})
link_directories(${STARPU_LIBRARY_DIRS})
link_directories(${STARPU_SHM_STATIC_LIBRARY_DIRS})
link_directories(${CHAMELEON_LIBRARY_DIRS})
link_directories(${HICMA_LIBRARY_DIRS})
if (EXAGEOSTAT_USE_CUDA)
CUDA_add_library(exageostat ${EXAGEOSTAT_SRC} ${EXAGEOSTAT_CHAMELEON_SRC})
set_target_properties(exageostat PROPERTIES LINKER_LANGUAGE C)
else ()
add_library(exageostat ${EXAGEOSTAT_SRC} ${EXAGEOSTAT_CHAMELEON_SRC})
endif ()
set_target_properties(exageostat PROPERTIES PUBLIC_HEADER "${INSTALL_HEADERS}")
target_link_libraries(exageostat
${EXAGEOSTAT_DEP}
)
install(TARGETS exageostat
DESTINATION lib/
PUBLIC_HEADER DESTINATION include/
)
if (EXAGEOSTAT_EXAMPLES)
enable_testing()
include(CTest)
add_subdirectory(examples)
endif ()
###############################################################################
# Documentation #
#################
option(EXAGEOSTAT_ENABLE_DOCS "Build documentation in docs directory" ON)
if (EXAGEOSTAT_ENABLE_DOCS)
find_package(Doxygen)
if (DOXYGEN_FOUND)
add_subdirectory("docs")
else ()
message(STATUS "Doxygen NOT found, skipping documentation")
endif ()
endif ()
#------------------------------------------------------------------------------
###############################################################################
# Config files (pkg_config) #
#############################
# Create file chameleon_starpu.pc
# ---------------------------
generate_pkgconfig_file()
#------------------------------------------------------------------------------
option(EXAGEOSTAT_PACKAGE "Enable a packaging system for distribution" OFF)
if (EXAGEOSTAT_PACKAGE)
###############################################################################
# Release source #
##################
set(CPACK_SOURCE_GENERATOR "TGZ")
set(CPACK_GENERATOR "TGZ")
set(CPACK_PACKAGE_NAME "exageostat")
set(CPACK_PACKAGE_DESCRIPTION_FILE ${CMAKE_CURRENT_SOURCE_DIR}/README.md)
set(CPACK_PACKAGE_DESCRIPTION_SUMMARY "ExaGeoStat is a parallel high performance unified framework for geostatistics on manycore systems. Its abbreviation stands for 'Exascale Geostatistics'.")
set(CPACK_PACKAGE_VERSION "${EXAGEOSTAT_VERSION_MAJOR}.${EXAGEOSTAT_VERSION_MINOR}.${EXAGEOSTAT_VERSION_PATCH}")
set(CPACK_PACKAGE_FILE_NAME "${CPACK_PACKAGE_NAME}-${CPACK_PACKAGE_VERSION}")
set(CPACK_SOURCE_PACKAGE_FILE_NAME "${CPACK_PACKAGE_NAME}-${CPACK_PACKAGE_VERSION}-src")
set(CPACK_PACKAGE_VENDOR "KAUST")
set(CPACK_PACKAGE_CONTACT "[email protected]")
set(CPACK_RESOURCE_FILE_README ${CMAKE_CURRENT_SOURCE_DIR}/README.md)
set(CPACK_SOURCE_IGNORE_FILES "plasma-conversion;build;.cproject;.settings;.dir-locals.el;.project;.pydevproject;.svn;.git;.gitmodules;.gitlab-ci.yml;Jenkinsfile;jenkins-scripts;chameleon-repo")
include(CPack)
endif ()
###############################################################################
# Print Options #
#################
get_directory_property(EXAGEOSTAT_DEFINITIONS_LIST DIRECTORY ${CMAKE_SOURCE_DIR} COMPILE_DEFINITIONS)
include(PrintOpts)
if (CMAKE_INSTALL_PREFIX STREQUAL "/usr/local" OR CMAKE_INSTALL_PREFIX STREQUAL "C:/Program Files")
message("-- ${Yellow}Your CMAKE_INSTALL_PREFIX is ${CMAKE_INSTALL_PREFIX} which is a default system path."
" You may want to change it: set the CMAKE_INSTALL_PREFIX variable to do so${ColourReset}")
else ()
message("-- ${Yellow}Your CMAKE_INSTALL_PREFIX is ${CMAKE_INSTALL_PREFIX}${ColourReset}")
endif ()
###
### END CMakeLists.txt
###