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environment.yml
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name: CLEAR
channels:
- pytorch
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_gnu
- blas=1.0=mkl
- bzip2=1.0.8=h7f98852_4
- ca-certificates=2021.5.30=ha878542_0
- certifi=2021.5.30=py38h578d9bd_0
- cudatoolkit=10.2.89=h8f6ccaa_8
- ffmpeg=4.3=hf484d3e_0
- freetype=2.10.4=h0708190_1
- gmp=6.2.1=h58526e2_0
- gnutls=3.6.13=h85f3911_1
- intel-openmp=2021.3.0=h06a4308_3350
- jpeg=9b=h024ee3a_2
- lame=3.100=h7f98852_1001
- lcms2=2.12=h3be6417_0
- ld_impl_linux-64=2.36.1=hea4e1c9_2
- libffi=3.3=h58526e2_2
- libgcc-ng=11.1.0=hc902ee8_6
- libgomp=11.1.0=hc902ee8_6
- libiconv=1.16=h516909a_0
- libpng=1.6.37=h21135ba_2
- libstdcxx-ng=11.1.0=h56837e0_6
- libtiff=4.2.0=h85742a9_0
- libuv=1.42.0=h7f98852_0
- libwebp-base=1.2.0=h7f98852_2
- lz4-c=1.9.3=h9c3ff4c_1
- mkl=2021.3.0=h06a4308_520
- mkl-service=2.4.0=py38h497a2fe_0
- mkl_fft=1.3.0=py38h42c9631_2
- mkl_random=1.2.2=py38h1abd341_0
- ncurses=6.2=h58526e2_4
- nettle=3.6=he412f7d_0
- ninja=1.10.2=h4bd325d_0
- numpy=1.20.3=py38hf144106_0
- numpy-base=1.20.3=py38h74d4b33_0
- olefile=0.46=pyh9f0ad1d_1
- openh264=2.1.1=h780b84a_0
- openjpeg=2.4.0=hb52868f_1
- openssl=1.1.1k=h7f98852_0
- pillow=8.3.1=py38h2c7a002_0
- pip=21.2.2=pyhd8ed1ab_0
- python=3.8.10=h49503c6_1_cpython
- python_abi=3.8=2_cp38
- pytorch=1.8.0=py3.8_cuda10.2_cudnn7.6.5_0
- readline=8.1=h46c0cb4_0
- setuptools=49.6.0=py38h578d9bd_3
- six=1.16.0=pyh6c4a22f_0
- sqlite=3.36.0=h9cd32fc_0
- tk=8.6.10=h21135ba_1
- torchaudio=0.8.0=py38
- torchvision=0.9.0=py38_cu102
- typing_extensions=3.10.0.0=pyha770c72_0
- wheel=0.36.2=pyhd3deb0d_0
- xz=5.2.5=h516909a_1
- zlib=1.2.11=h516909a_1010
- zstd=1.4.9=ha95c52a_0
- pip:
- anndata==0.7.6
- cycler==0.10.0
- h5py==3.3.0
- joblib==1.0.1
- kiwisolver==1.3.1
- leidenalg==0.8.7
- llvmlite==0.36.0
- matplotlib==3.4.2
- natsort==7.1.1
- networkx==2.6.2
- numba==0.53.1
- numexpr==2.7.3
- packaging==21.0
- pandas==1.3.1
- patsy==0.5.1
- pynndescent==0.5.4
- pyparsing==2.4.7
- python-dateutil==2.8.2
- python-igraph==0.9.6
- pytz==2021.1
- scanpy==1.8.1
- scikit-learn==0.24.2
- scipy==1.7.0
- seaborn==0.11.1
- sinfo==0.3.4
- statsmodels==0.12.2
- stdlib-list==0.8.0
- tables==3.6.1
- texttable==1.6.4
- threadpoolctl==2.2.0
- tqdm==4.62.0
- umap-learn==0.5.1
- xlrd==1.2.0
prefix: /user/liyu/miniconda3/envs/CLEAR