You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
sarna.cluster.get_neighbours() - mne has many FT neighbours now, but these might have been manually curated by me some time ago, so I should check before removing
sarna.utils.extend_slice if not used elsewhere (here or DiamSar)
sarna.viz.plot_topomap_raw seems not to be used
sarna.utils.find_files - could be useful when improved, but currently not used
sarna.events.create_middle_events
sarna.cluster.plot_neighbours() becasue mne already has mne.viz.plot_ch_adjacency
sarna.viz.plot_cluster_heatmap - this functionality is offered now by borsar.Clusters
remove viz.heatmap() and its dependencies - its already in borsar
Relatively easy to move to borsar
proj.find_dropbox and get_valid_path
viz.highlight
Easy finish
sarna.colors might be useful in future, but currently does not offer anything worth using
Cluster-level stuff will require more work to clen up and unify:
permutation_cluster_t_test() later maybe just permutation_cluster_test
_permutation_cluster_test_3d + change its name (it is now more general than 3d)
I have cleaned sarna.utils.mne_types - it is used in two places in sarna but I'll have to see if it will be actually useful
The text was updated successfully, but these errors were encountered:
mmagnuski
changed the title
Waiting list of functions to be moved to borsar
Cleanup plan - move some things to borsar, remove some function that are never used
Apr 13, 2022
Remove entirely
sarna.cluster.get_neighbours()
- mne has many FT neighbours now, but these might have been manually curated by me some time ago, so I should check before removingsarna.utils.extend_slice
if not used elsewhere (here or DiamSar)sarna.viz.plot_topomap_raw
seems not to be usedsarna.utils.find_files
- could be useful when improved, but currently not usedsarna.events.create_middle_events
sarna.cluster.plot_neighbours()
becasue mne already hasmne.viz.plot_ch_adjacency
sarna.viz.plot_cluster_heatmap
- this functionality is offered now by borsar.Clustersviz.heatmap()
and its dependencies - its already inborsar
Relatively easy to move to borsar
proj.find_dropbox
andget_valid_path
viz.highlight
Easy finish
sarna.colors
might be useful in future, but currently does not offer anything worth usingCluster-level stuff will require more work to clen up and unify:
permutation_cluster_t_test()
later maybe justpermutation_cluster_test
_permutation_cluster_test_3d
+ change its name (it is now more general than 3d)Check and plan
sarna.gui
- is any of that works still?events.apply_artifacts_to_tfr
,events.read_set_events()
sarna.utils.mne_types
- it is used in two places insarna
but I'll have to see if it will be actually usefulThe text was updated successfully, but these errors were encountered: