diff --git a/docs/report/tbx5_all_variants.html b/docs/report/tbx5_all_variants.html index e83216ca2..2ff47df3a 100644 --- a/docs/report/tbx5_all_variants.html +++ b/docs/report/tbx5_all_variants.html @@ -108,7 +108,7 @@ table td, tr { - text-align: right; + text-align: left; padding: 0px 5px; } @@ -120,10 +120,6 @@ background-color: var(--gpsea-color-surface-a20); } - .lft { - text-align: left; - } - caption { caption-side: top; text-align: left; @@ -144,7 +140,7 @@

Variant alleles

Count - Variant key + Variant key HGVS Overlapping Exons Effects @@ -152,7 +148,7 @@

Variant alleles

22 - 12_114385521_114385521_C_T + 12_114385521_114385521_C_T c.710G>A (p.Arg237Gln) 7 missense @@ -160,7 +156,7 @@

Variant alleles

20 - 12_114401830_114401830_C_T + 12_114401830_114401830_C_T c.238G>A (p.Gly80Arg) 3 missense @@ -168,7 +164,7 @@

Variant alleles

8 - 12_114385563_114385563_G_A + 12_114385563_114385563_G_A c.668C>T (p.Thr223Met) 7 missense @@ -176,7 +172,7 @@

Variant alleles

6 - 12_114398675_114398675_G_T + 12_114398675_114398675_G_T c.408C>A (p.Tyr136Ter) 5 stop gained @@ -184,15 +180,15 @@

Variant alleles

5 - 12_114398682_114398682_C_CG - c.400dup (p.Arg134ProfsTer49) - 5 - frameshift + 12_114399514_114399514_A_C + c.361T>G (p.Trp121Gly) + 4 + missense, splice region 5 - 12_114403792_114403792_C_CG + 12_114403792_114403792_C_CG c.106_107insC (p.Ser36ThrfsTer25) 2 frameshift @@ -200,15 +196,23 @@

Variant alleles

5 - 12_114399514_114399514_A_C - c.361T>G (p.Trp121Gly) + 12_114398682_114398682_C_CG + c.400dup (p.Arg134ProfsTer49) + 5 + frameshift + + + 4 - missense, splice region + 12_114403798_114403798_G_GC + c.100dup (p.Ala34GlyfsTer27) + 2 + frameshift 4 - 12_114385522_114385522_G_A + 12_114385522_114385522_G_A c.709C>T (p.Arg237Trp) 7 missense @@ -216,15 +220,15 @@

Variant alleles

4 - 12_114398656_114398656_C_CG - c.426dup (p.Ala143ArgfsTer40) - 5 - frameshift + 12_114366360_114366360_C_T + c.787G>A (p.Val263Met) + 8 + missense 4 - 12_114385474_114385474_A_G + 12_114385474_114385474_A_G c.755+2T>C (-) - splice donor @@ -232,79 +236,87 @@

Variant alleles

4 - 12_114403798_114403798_G_GC - c.100dup (p.Ala34GlyfsTer27) + 12_114398656_114398656_C_CG + c.426dup (p.Ala143ArgfsTer40) + 5 + frameshift + + + + 3 + 12_114403798_114403799_GC_G + c.100del (p.Ala34ProfsTer32) 2 frameshift + 3 + 12_114399613_114399613_T_A + c.262A>T (p.Lys88Ter) 4 - 12_114366360_114366360_C_T - c.787G>A (p.Val263Met) - 8 - missense + stop gained 3 - 12_114401853_114401853_G_T - c.215C>A (p.Thr72Lys) + 12_114401827_114401827_T_A + c.241A>T (p.Arg81Trp) 3 - missense + missense, splice region 3 - 12_114385475_114385475_C_T - c.755+1G>A (-) - - - splice donor + 12_114401853_114401853_G_T + c.215C>A (p.Thr72Lys) + 3 + missense 3 - 12_114399613_114399613_T_A - c.262A>T (p.Lys88Ter) - 4 + 12_114366312_114366312_G_A + c.835C>T (p.Arg279Ter) + 8 stop gained 3 - 12_114403798_114403799_GC_G - c.100del (p.Ala34ProfsTer32) - 2 - frameshift + 12_114366366_114366366_T_A + c.781A>T (p.Ser261Cys) + 8 + missense 3 - 12_114401827_114401827_T_A - c.241A>T (p.Arg81Trp) - 3 - missense, splice region + 12_114385475_114385475_C_T + c.755+1G>A (-) + - + splice donor - 3 - 12_114366366_114366366_T_A - c.781A>T (p.Ser261Cys) + 2 + 12_114366207_114366208_GC_G + c.939del (p.Gln315ArgfsTer79) 8 - missense + frameshift - 3 - 12_114366312_114366312_G_A - c.835C>T (p.Arg279Ter) - 8 - stop gained + 2 + 12_114403754_114403754_G_T + c.145C>A (p.Gln49Lys) + 2 + missense, splice region 2 - 12_114385521_114385521_C_G + 12_114385521_114385521_C_G c.710G>C (p.Arg237Pro) 7 missense @@ -312,7 +324,7 @@

Variant alleles

2 - 12_114398666_114398667_TG_T + 12_114398666_114398667_TG_T c.416del (p.Pro139GlnfsTer11) 5 frameshift @@ -320,7 +332,7 @@

Variant alleles

2 - 12_114385550_114385550_A_AATTATTCTCAG + 12_114385550_114385550_A_AATTATTCTCAG c.680_681insCTGAGAATAAT (p.Ile227_Glu228insTer) 7 inframe insertion, stop retainined @@ -328,31 +340,23 @@

Variant alleles

2 - 12_114403754_114403754_G_T - c.145C>A (p.Gln49Lys) - 2 - missense, splice region - - - - 2 - 12_114366207_114366208_GC_G - c.939del (p.Gln315ArgfsTer79) + 12_114366274_114366274_G_T + c.873C>A (p.Tyr291Ter) 8 - frameshift + stop gained 2 - 12_114398568_114398568_C_A - c.510+5G>T (-) - - - splice donor 5th base, intronic + 12_114366267_114366267_C_A + c.880G>T (p.Glu294Ter) + 8 + stop gained 2 - 12_114394762_114394763_CA_C + 12_114394762_114394763_CA_C c.641del (p.Val214GlyfsTer12) 6 frameshift @@ -360,7 +364,7 @@

Variant alleles

2 - 12_114398578_114398579_CA_C + 12_114398578_114398579_CA_C c.504del (p.Phe168LeufsTer6) 5 frameshift @@ -368,143 +372,135 @@

Variant alleles

2 - 12_114366267_114366267_C_A - c.880G>T (p.Glu294Ter) - 8 - stop gained - - - - 2 - 12_114366274_114366274_G_T - c.873C>A (p.Tyr291Ter) - 8 - stop gained + 12_114398568_114398568_C_A + c.510+5G>T (-) + - + splice donor 5th base, intronic 1 - 12_114398632_114398632_G_A - c.451C>T (p.Gln151Ter) - 5 - stop gained + 12_114399594_114399594_A_C + c.281T>G (p.Leu94Arg) + 4 + missense 1 - 12_114355755_114355756_TG_T - c.1333del (p.His445MetfsTer137) - 9 + 12_114366348_114366349_CT_C + c.798del (p.Val267TrpfsTer127) + 8 frameshift 1 - 12_114356064_114356065_TA_T - c.1024del (p.Tyr342ThrfsTer52) - 9 - frameshift + 12_114403859_114403859_G_T + c.40C>A (p.Pro14Thr) + 2 + missense 1 - 12_114366348_114366349_CT_C - c.798del (p.Val267TrpfsTer127) - 8 + 12_114399625_114399629_ACATC_A + c.246_249del (p.Met83PhefsTer6) + 4 frameshift 1 - 12_114401921_114401921_C_G - c.148-1G>C (-) - - - splice acceptor + 12_114401907_114401907_A_G + c.161T>C (p.Ile54Thr) + 3 + missense 1 - 12_114398626_114398627_CG_C - c.456del (p.Val153SerfsTer21) - 5 - frameshift + 12_114394820_114394820_C_G + c.584G>C (p.Gly195Ala) + 6 + missense 1 - 12_114401873_114401874_TA_T - c.194del (p.Leu65GlnfsTer10) - 3 - frameshift + 12_114385553_114385553_C_A + c.678G>T (p.Lys226Asn) + 7 + missense 1 - 12_114394817_114394817_G_C - c.587C>G (p.Ser196Ter) - 6 + 12_114398632_114398632_G_A + c.451C>T (p.Gln151Ter) + 5 stop gained 1 - 12_114403859_114403859_G_T - c.40C>A (p.Pro14Thr) - 2 - missense + 12_114398708_114398709_GC_G + c.374del (p.Gly125AlafsTer25) + 5 + frameshift 1 - 12_114385553_114385553_C_A - c.678G>T (p.Lys226Asn) - 7 - missense + 12_114356064_114356065_TA_T + c.1024del (p.Tyr342ThrfsTer52) + 9 + frameshift 1 - 12_114399625_114399629_ACATC_A - c.246_249del (p.Met83PhefsTer6) - 4 - frameshift + 12_114401921_114401921_C_G + c.148-1G>C (-) + - + splice acceptor 1 - 12_114398708_114398709_GC_G - c.374del (p.Gly125AlafsTer25) + 12_114398602_114398602_T_G + c.481A>C (p.Thr161Pro) 5 - frameshift + missense 1 - 12_114366241_114366242_CT_C - c.905del (p.Gln302ArgfsTer92) - 8 + 12_114355755_114355756_TG_T + c.1333del (p.His445MetfsTer137) + 9 frameshift 1 - 12_114399594_114399594_A_C - c.281T>G (p.Leu94Arg) - 4 - missense + 12_114401873_114401874_TA_T + c.194del (p.Leu65GlnfsTer10) + 3 + frameshift 1 - 12_114399622_114399622_G_T - c.253C>A (p.Pro85Thr) - 4 - missense + 12_114398626_114398627_CG_C + c.456del (p.Val153SerfsTer21) + 5 + frameshift 1 - 12_114399633_114399633_C_G + 12_114399633_114399633_C_G c.243-1G>C (-) - splice acceptor @@ -512,31 +508,31 @@

Variant alleles

1 - 12_114401907_114401907_A_G - c.161T>C (p.Ile54Thr) - 3 + 12_114399559_114399559_T_C + c.316A>G (p.Ile106Val) + 4 missense 1 - 12_114394743_114394746_TGTG_T - c.658_660del (p.His220del) - 6 - inframe deletion + 12_114401846_114401846_C_G + c.222G>C (p.Met74Ile) + 3 + missense 1 - 12_114355784_114355785_CA_C - c.1304del (p.Leu435ArgfsTer147) - 9 + 12_114366241_114366242_CT_C + c.905del (p.Gln302ArgfsTer92) + 8 frameshift 1 - 12_114355723_114355723_G_A + 12_114355723_114355723_G_A c.1366C>T (p.Gln456Ter) 9 stop gained @@ -544,34 +540,34 @@

Variant alleles

1 - 12_114401846_114401846_C_G - c.222G>C (p.Met74Ile) - 3 - missense + 12_114355784_114355785_CA_C + c.1304del (p.Leu435ArgfsTer147) + 9 + frameshift 1 - 12_114398602_114398602_T_G - c.481A>C (p.Thr161Pro) - 5 - missense + 12_114394817_114394817_G_C + c.587C>G (p.Ser196Ter) + 6 + stop gained 1 - 12_114394820_114394820_C_G - c.584G>C (p.Gly195Ala) - 6 + 12_114399622_114399622_G_T + c.253C>A (p.Pro85Thr) + 4 missense 1 - 12_114399559_114399559_T_C - c.316A>G (p.Ile106Val) - 4 - missense + 12_114394743_114394746_TGTG_T + c.658_660del (p.His220del) + 6 + inframe deletion diff --git a/docs/report/tbx5_cohort_info.html b/docs/report/tbx5_cohort_info.html index 91ab199ed..a1d74c81f 100644 --- a/docs/report/tbx5_cohort_info.html +++ b/docs/report/tbx5_cohort_info.html @@ -108,7 +108,7 @@ table td, tr { - text-align: right; + text-align: left; padding: 0px 5px; } @@ -120,10 +120,6 @@ background-color: var(--gpsea-color-surface-a20); } - .lft { - text-align: left; - } - caption { caption-side: top; text-align: left; @@ -178,67 +174,67 @@

HPO terms

n - HPO Term + HPO Term 50 - Atrial septal defect + Atrial septal defect 41 - Ventricular septal defect + Ventricular septal defect 40 - Hypoplasia of the radius + Hypoplasia of the radius 36 - Triphalangeal thumb + Triphalangeal thumb 32 - Short thumb + Short thumb 32 - Absent thumb + Absent thumb 30 - Abnormal carpal morphology + Abnormal carpal morphology 27 - Secundum atrial septal defect + Secundum atrial septal defect 15 - Absent radius + Absent radius 14 - Cardiac conduction abnormality + Cardiac conduction abnormality @@ -269,12 +265,12 @@

Diseases

n - Disease + Disease 156 - Holt-Oram syndrome + Holt-Oram syndrome @@ -298,77 +294,77 @@

Top 10 variants

n - Variant key + Variant key HGVS Variant Class 22 - 12_114385521_114385521_C_T + 12_114385521_114385521_C_T c.710G>A (p.Arg237Gln) MISSENSE_VARIANT 20 - 12_114401830_114401830_C_T + 12_114401830_114401830_C_T c.238G>A (p.Gly80Arg) MISSENSE_VARIANT 8 - 12_114385563_114385563_G_A + 12_114385563_114385563_G_A c.668C>T (p.Thr223Met) MISSENSE_VARIANT 6 - 12_114398675_114398675_G_T + 12_114398675_114398675_G_T c.408C>A (p.Tyr136Ter) STOP_GAINED 5 - 12_114399514_114399514_A_C + 12_114399514_114399514_A_C c.361T>G (p.Trp121Gly) MISSENSE_VARIANT, SPLICE_REGION_VARIANT 5 - 12_114398682_114398682_C_CG + 12_114398682_114398682_C_CG c.400dup (p.Arg134ProfsTer49) FRAMESHIFT_VARIANT 5 - 12_114403792_114403792_C_CG + 12_114403792_114403792_C_CG c.106_107insC (p.Ser36ThrfsTer25) FRAMESHIFT_VARIANT 4 - 12_114385474_114385474_A_G + 12_114385474_114385474_A_G c.755+2T>C (None) SPLICE_DONOR_VARIANT 4 - 12_114398656_114398656_C_CG + 12_114398656_114398656_C_CG c.426dup (p.Ala143ArgfsTer40) FRAMESHIFT_VARIANT 4 - 12_114403798_114403798_G_GC + 12_114403798_114403798_G_GC c.100dup (p.Ala34GlyfsTer27) FRAMESHIFT_VARIANT @@ -387,62 +383,62 @@

Variant effects

- + - + - + - + - + - + - + - + - + - + - + - + diff --git a/docs/report/tbx5_truncating_vs_missense.mtc_report.html b/docs/report/tbx5_truncating_vs_missense.mtc_report.html index 964786bc6..e1ed68af3 100644 --- a/docs/report/tbx5_truncating_vs_missense.mtc_report.html +++ b/docs/report/tbx5_truncating_vs_missense.mtc_report.html @@ -108,7 +108,7 @@ table td, tr { - text-align: right; + text-align: left; padding: 0px 5px; } @@ -120,10 +120,6 @@ background-color: var(--gpsea-color-surface-a20); } - .lft { - text-align: left; - } - caption { caption-side: top; text-align: left; diff --git a/docs/user-guide/analyses/report/tbx5_frameshift.mtc_report.html b/docs/user-guide/analyses/report/tbx5_frameshift.mtc_report.html index 02a43e97c..3a135e2dd 100644 --- a/docs/user-guide/analyses/report/tbx5_frameshift.mtc_report.html +++ b/docs/user-guide/analyses/report/tbx5_frameshift.mtc_report.html @@ -108,7 +108,7 @@ table td, tr { - text-align: right; + text-align: left; padding: 0px 5px; } @@ -120,10 +120,6 @@ background-color: var(--gpsea-color-surface-a20); } - .lft { - text-align: left; - } - caption { caption-side: top; text-align: left; diff --git a/docs/user-guide/reports/tbx5_cohort_info.html b/docs/user-guide/reports/tbx5_cohort_info.html index 417c6fc16..e3f8c577e 100644 --- a/docs/user-guide/reports/tbx5_cohort_info.html +++ b/docs/user-guide/reports/tbx5_cohort_info.html @@ -108,7 +108,7 @@ table td, tr { - text-align: right; + text-align: left; padding: 0px 5px; } @@ -120,10 +120,6 @@ background-color: var(--gpsea-color-surface-a20); } - .lft { - text-align: left; - } - caption { caption-side: top; text-align: left; @@ -178,67 +174,67 @@

HPO terms

- + - - - - - - - - - - @@ -269,12 +265,12 @@

Diseases

- + - @@ -298,77 +294,77 @@

Top 10 variants

- + - + - + - + - + - + - + - + - + - + - + @@ -387,62 +383,62 @@

Variant effects

Variant effectVariant effect Count
MISSENSE_VARIANTMISSENSE_VARIANT 85 (50%)
FRAMESHIFT_VARIANTFRAMESHIFT_VARIANT 38 (22%)
STOP_GAINEDSTOP_GAINED 19 (11%)
SPLICE_REGION_VARIANTSPLICE_REGION_VARIANT 10 (6%)
SPLICE_DONOR_VARIANTSPLICE_DONOR_VARIANT 7 (4%)
INFRAME_INSERTIONINFRAME_INSERTION 2 (1%)
STOP_RETAINED_VARIANTSTOP_RETAINED_VARIANT 2 (1%)
SPLICE_ACCEPTOR_VARIANTSPLICE_ACCEPTOR_VARIANT 2 (1%)
SPLICE_DONOR_5TH_BASE_VARIANTSPLICE_DONOR_5TH_BASE_VARIANT 2 (1%)
INTRON_VARIANTINTRON_VARIANT 2 (1%)
INFRAME_DELETIONINFRAME_DELETION 1 (1%)
nHPO TermHPO Term
50Atrial septal defect + Atrial septal defect
41Ventricular septal defect + Ventricular septal defect
40Hypoplasia of the radius + Hypoplasia of the radius
36Triphalangeal thumb + Triphalangeal thumb
32Absent thumb + Absent thumb
32Short thumb + Short thumb
30Abnormal carpal morphology + Abnormal carpal morphology
27Secundum atrial septal defect + Secundum atrial septal defect
15Absent radius + Absent radius
14Cardiac conduction abnormality + Cardiac conduction abnormality
nDiseaseDisease
156Holt-Oram syndrome + Holt-Oram syndrome
nVariant keyVariant key HGVS Variant Class
2212_114385521_114385521_C_T12_114385521_114385521_C_T c.710G>A (p.Arg237Gln) MISSENSE_VARIANT
2012_114401830_114401830_C_T12_114401830_114401830_C_T c.238G>A (p.Gly80Arg) MISSENSE_VARIANT
812_114385563_114385563_G_A12_114385563_114385563_G_A c.668C>T (p.Thr223Met) MISSENSE_VARIANT
612_114398675_114398675_G_T12_114398675_114398675_G_T c.408C>A (p.Tyr136Ter) STOP_GAINED
512_114398682_114398682_C_CG12_114398682_114398682_C_CG c.400dup (p.Arg134ProfsTer49) FRAMESHIFT_VARIANT
512_114399514_114399514_A_C12_114399514_114399514_A_C c.361T>G (p.Trp121Gly) MISSENSE_VARIANT, SPLICE_REGION_VARIANT
512_114403792_114403792_C_CG12_114403792_114403792_C_CG c.106_107insC (p.Ser36ThrfsTer25) FRAMESHIFT_VARIANT
412_114385522_114385522_G_A12_114385522_114385522_G_A c.709C>T (p.Arg237Trp) MISSENSE_VARIANT
412_114398656_114398656_C_CG12_114398656_114398656_C_CG c.426dup (p.Ala143ArgfsTer40) FRAMESHIFT_VARIANT
412_114403798_114403798_G_GC12_114403798_114403798_G_GC c.100dup (p.Ala34GlyfsTer27) FRAMESHIFT_VARIANT
- + - + - + - + - + - + - + - + - + - + - + - + diff --git a/docs/user-guide/reports/tbx5_protein_info.html b/docs/user-guide/reports/tbx5_protein_info.html index 1280c8ce5..2f0febfc2 100644 --- a/docs/user-guide/reports/tbx5_protein_info.html +++ b/docs/user-guide/reports/tbx5_protein_info.html @@ -108,7 +108,7 @@ table td, tr { - text-align: right; + text-align: left; padding: 0px 5px; } @@ -120,10 +120,6 @@ background-color: var(--gpsea-color-surface-a20); } - .lft { - text-align: left; - } - caption { caption-side: top; text-align: left; @@ -157,7 +153,7 @@

T-box transcription factor TBX5: NP_852259.1

- + @@ -165,7 +161,7 @@

T-box transcription factor TBX5: NP_852259.1

- + @@ -173,7 +169,7 @@

T-box transcription factor TBX5: NP_852259.1

- + @@ -181,7 +177,7 @@

T-box transcription factor TBX5: NP_852259.1

- + diff --git a/src/gpsea/view/templates/all_variants.html b/src/gpsea/view/templates/all_variants.html index 73e8bb8c9..3b0ea2846 100644 --- a/src/gpsea/view/templates/all_variants.html +++ b/src/gpsea/view/templates/all_variants.html @@ -10,7 +10,7 @@

Variant alleles

- + @@ -18,7 +18,7 @@

Variant alleles

{% for vdata in variant_counts %} - + diff --git a/src/gpsea/view/templates/cohort.html b/src/gpsea/view/templates/cohort.html index 292a7d456..5ed67c91d 100644 --- a/src/gpsea/view/templates/cohort.html +++ b/src/gpsea/view/templates/cohort.html @@ -52,13 +52,13 @@

HPO terms

- + {% for count in hpo_counts %} - {% endfor %} @@ -106,14 +106,14 @@

Measurements

- + {% for count in measurement_counts %} - + {% endfor %} @@ -140,12 +140,12 @@

Diseases

- + {% for count in disease_counts %} - {% endfor %} @@ -171,14 +171,14 @@

Top {{top_var_count}} variants

- + {% for count in var_counts %} - + @@ -197,12 +197,12 @@

Variant effects

Variant effectVariant effect Count
MISSENSE_VARIANTMISSENSE_VARIANT 85 (50%)
FRAMESHIFT_VARIANTFRAMESHIFT_VARIANT 38 (22%)
STOP_GAINEDSTOP_GAINED 19 (11%)
SPLICE_REGION_VARIANTSPLICE_REGION_VARIANT 10 (6%)
SPLICE_DONOR_VARIANTSPLICE_DONOR_VARIANT 7 (4%)
INFRAME_INSERTIONINFRAME_INSERTION 2 (1%)
STOP_RETAINED_VARIANTSTOP_RETAINED_VARIANT 2 (1%)
SPLICE_ACCEPTOR_VARIANTSPLICE_ACCEPTOR_VARIANT 2 (1%)
SPLICE_DONOR_5TH_BASE_VARIANTSPLICE_DONOR_5TH_BASE_VARIANT 2 (1%)
INTRON_VARIANTINTRON_VARIANT 2 (1%)
INFRAME_DELETIONINFRAME_DELETION 1 (1%)
Disordered Region 2 - 46p.Ala34GlyfsTer27; p.Ser36ThrfsTer25; p.Ala34ProfsTer32; p.Pro14Thrp.Ala34GlyfsTer27; p.Ala34ProfsTer32; p.Ser36ThrfsTer25; p.Pro14Thr
T-box DNA binding 59 - 238p.Trp121Gly; p.Ala143ArgfsTer40; p.Leu94Arg; p.Arg237Trp; p.Gly80Arg; p.Arg237Gln; p.Thr72Lys; p.Val214GlyfsTer12; p.Ile227_Glu228insTer; p.Phe168LeufsTer6; p.Arg81Trp; p.Tyr136Ter; p.Gln151Ter; p.Lys88Ter; p.Pro85Thr; p.His220del; p.Arg237Pro; p.Arg134ProfsTer49; p.Ile106Val; p.Met83PhefsTer6; p.Val153SerfsTer21; p.Met74Ile; p.Thr161Pro; p.Lys226Asn; p.Leu65GlnfsTer10; p.Thr223Met; p.Pro139GlnfsTer11; p.Gly125AlafsTer25; p.Ser196Ter; p.Gly195Alap.Pro139GlnfsTer11; p.Ile106Val; p.Phe168LeufsTer6; p.Ser196Ter; p.Arg237Trp; p.Arg237Pro; p.Gly195Ala; p.Ala143ArgfsTer40; p.Thr161Pro; p.Leu65GlnfsTer10; p.Met83PhefsTer6; p.Leu94Arg; p.His220del; p.Tyr136Ter; p.Gln151Ter; p.Ile227_Glu228insTer; p.Arg237Gln; p.Arg81Trp; p.Trp121Gly; p.Thr72Lys; p.Lys226Asn; p.Met74Ile; p.Gly125AlafsTer25; p.Gly80Arg; p.Arg134ProfsTer49; p.Pro85Thr; p.Val214GlyfsTer12; p.Lys88Ter; p.Val153SerfsTer21; p.Thr223Met
Disordered Region 251 - 356p.Glu294Ter; p.Val267TrpfsTer127; p.Tyr291Ter; p.Val263Met; p.Ser261Cys; p.Gln315ArgfsTer79; p.Arg279Ter; p.Gln302ArgfsTer92; p.Tyr342ThrfsTer52p.Tyr291Ter; p.Gln302ArgfsTer92; p.Val267TrpfsTer127; p.Val263Met; p.Gln315ArgfsTer79; p.Ser261Cys; p.Glu294Ter; p.Arg279Ter; p.Tyr342ThrfsTer52
Polar residues Compositional bias 264 - 299p.Arg279Ter; p.Tyr291Ter; p.Val267TrpfsTer127; p.Glu294Terp.Arg279Ter; p.Tyr291Ter; p.Glu294Ter; p.Val267TrpfsTer127
CountVariant keyVariant key HGVS Overlapping Exons Effects
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nHPO TermHPO Term
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nMeasurementMeasurement ID
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nDiseaseDisease
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nVariant keyVariant key HGVS Variant Class
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- + {% for effect in variant_effects %} - + {% endfor %} diff --git a/src/gpsea/view/templates/minibase.html b/src/gpsea/view/templates/minibase.html index aa7594f6a..656aa38b8 100644 --- a/src/gpsea/view/templates/minibase.html +++ b/src/gpsea/view/templates/minibase.html @@ -108,7 +108,7 @@ table td, tr { - text-align: right; + text-align: left; padding: 0px 5px; } @@ -120,10 +120,6 @@ background-color: var(--gpsea-color-surface-a20); } - .lft { - text-align: left; - } - caption { caption-side: top; text-align: left;
Variant effectVariant effect Count
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