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Citation for 3Dactive-hydrodynamics Repository

This file provides citation information for the 3Dactive-hydrodynamics repository hosted on GitHub.

Repository Information

  • Repository: 3Dactive-hydrodynamics
  • Description: Repository for OpenFPM code that solves the 3D active Ericksen-Leslie Model.
  • License: GPL-3.0.
  • Main Features:
    • anaEulerian.cpp: C++ code for simulating the active Ericksen-Leslie hydrodynamics in an Eulerian frame of reference.
    • anaHyb.cpp: C++ code for simulating the active Ericksen-Leslie hydrodynamics in a Lagrangian frame with remeshing at every time step.
    • annulus.cpp: C++ code for simulating the active Ericksen-Leslie hydrodynamics in an Eulerian frame for annular geometry.
    • complexGeometries.cpp: C++ code for simulating the active Ericksen-Leslie hydrodynamics in Eulerian frame for complex 3D geometry using point cloud data.

Please cite the following related publications if you use these codes.

  1. A numerical solver for active hydrodynamics in three dimensions and its application to active turbulence

    • Authors: Abhinav Singh, Philipp H. Suhrcke, Pietro Incardona, Ivo F. Sbalzarini.
    • Published in: Physics of Fluids, 1 October 2023.
    • Volume: 35, Issue: 10, Article: 105155.
    • DOI: 10.1063/5.0169546.
    • Related Information: This publication presents a higher-order convergent numerical solver for active polar hydrodynamics in three-dimensional domains of arbitrary shape. It involves a scalable open-source software implementation for shared- and distributed-memory parallel computers, enabling the computational study of the nonlinear dynamics of out-of-equilibrium materials from first principles.
  2. A C++ expression system for partial differential equations enables generic simulations of biological hydrodynamics

  3. OpenFPM: A scalable open framework for particle and particle-mesh codes on parallel computers