NEWS.md

CHANGES IN VERSION 1.6.1

- Update: MONSTER has a wrapper function to process input
- Update: LIONESS can use new data merging strategies ('union','intersection','legacy') as opposed to union by default

CHANGES IN VERSION 1.6.0

- New method: COBRA for batch-effect correction in correlation networks
- New method: BLOBFISH for estimating null models for gene regulatory networks
- New method: TIGER finds transcription factor activity using a Bayesian approach

CHANGES IN VERSION 1.3.2

- R implementation of SPIDER
- R implementation of DRAGON
- header argument in pandaPy

CHANGES IN VERSION 1.1.12

- Reactivated unit tests for Ubuntu GitHub actions.
- LIONESS can now build single-sample coexpression networks using @kshutta's implementation
- Fix for ALPACA singleton community case (detected by @talkhanz)
- Fix for CRANE significance test on constant modularity scores (detected by @talkhanz)
- Improved method description by @kshutta
- Fix for PANDA edge case when only expression is provided