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Add custom qiime reference database support to Ampliseq. #665

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MatthewJM96 opened this issue Nov 28, 2023 · 2 comments
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Add custom qiime reference database support to Ampliseq. #665

MatthewJM96 opened this issue Nov 28, 2023 · 2 comments

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@MatthewJM96
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MatthewJM96 commented Nov 28, 2023 •
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Implement an equivalent custom database flag as exists for Kraken and Dada (i.e. qiime_ref_tax_custom).
@MatthewJM96 MatthewJM96 converted this from a draft issue Nov 28, 2023
@MatthewJM96 MatthewJM96 moved this to In progress in Hackathon: November 2023 Nov 28, 2023
@d4straub
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A custom trained classifier can be already supplied with --classifier, but there is indeed no option equivalent to --dada_ref_tax_custom.

@d4straub
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Was solved in #667 & #673

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@MatthewJM96 @d4straub