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Output .bed file not found in the MACS2 folder #448

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GopishankarThirumoorthy opened this issue Feb 3, 2025 · 0 comments
Open

Output .bed file not found in the MACS2 folder #448

GopishankarThirumoorthy opened this issue Feb 3, 2025 · 0 comments

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@GopishankarThirumoorthy
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I recently ran my samples through the nf-core/chipseq pipeline and now want to use ChIPseeker for annotation. However, after checking the output, I couldn’t find the MACS2 folder containing the BED file. I would appreciate any assistance with this issue.
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