Workflow output definition #963
GitHub Actions / JUnit Test Report
failed
Feb 28, 2024 in 0s
7 tests run, 1 passed, 0 skipped, 6 failed.
Annotations
Check failure on line 1 in Parameters: --nf_core_pipeline rnaseq
github-actions / JUnit Test Report
Parameters: --nf_core_pipeline rnaseq
Assertion failed:
2 of 3 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 23.04.5
Launching `/home/runner/work/fetchngs/fetchngs/~/tests/2599673342ff43612ff5d2c71e6538ee/meta/mock.nf` [maniac_bhaskara] DSL2 - revision: 1344f41b7b
Downloading plugin [email protected]
[93/7a24b6] Submitted process > SRA:SRA_IDS_TO_RUNINFO (ERX1234253)
[8d/8022b6] Submitted process > SRA:SRA_IDS_TO_RUNINFO (SRX6725035)
[57/cbefee] Submitted process > SRA:SRA_IDS_TO_RUNINFO (DRX026011)
[84/48123c] Submitted process > SRA:SRA_RUNINFO_TO_FTP (1)
[6a/499213] Submitted process > SRA:SRA_RUNINFO_TO_FTP (2)
[e2/e99b85] Submitted process > SRA:SRA_FASTQ_FTP (ERX1234253_ERR1160846)
[ac/78d3ba] Submitted process > SRA:SRA_FASTQ_FTP (SRX6725035_SRR9984183)
[22/b3f74d] Submitted process > SRA:SRA_RUNINFO_TO_FTP (3)
[63/3aa838] Submitted process > SRA:SRA_FASTQ_FTP (DRX026011_DRR028935)
[52/70616c] Submitted process > SRA:SRA_TO_SAMPLESHEET
[d7/1ffb7f] Submitted process > SRA:MULTIQC_MAPPINGS_CONFIG
Nextflow stderr:
Check failure on line 1 in .devcontainer
github-actions / JUnit Test Report
.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...
Assertion failed:
2 of 3 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 23.04.5
Launching `/home/runner/work/fetchngs/fetchngs/~/tests/8b973ab156599d87f83112471195810d/meta/mock.nf` [boring_payne] DSL2 - revision: 1344f41b7b
[07/d0432f] Submitted process > SRA:SRA_IDS_TO_RUNINFO (SRX6725035)
[8b/9c3207] Submitted process > SRA:SRA_IDS_TO_RUNINFO (ERX1234253)
[a8/5ba1ac] Submitted process > SRA:SRA_IDS_TO_RUNINFO (DRX026011)
[34/75fd0c] Submitted process > SRA:SRA_RUNINFO_TO_FTP (1)
[94/32ed57] Submitted process > SRA:SRA_RUNINFO_TO_FTP (2)
[e5/b2888e] Submitted process > SRA:SRA_FASTQ_FTP (SRX6725035_SRR9984183)
[b5/815892] Submitted process > SRA:SRA_FASTQ_FTP (ERX1234253_ERR1160846)
[0d/5740c9] Submitted process > SRA:SRA_RUNINFO_TO_FTP (3)
[66/edd5ec] Submitted process > SRA:SRA_FASTQ_FTP (DRX026011_DRR028935)
[92/54dd5d] Submitted process > SRA:SRA_TO_SAMPLESHEET
[51/3141c8] Submitted process > SRA:MULTIQC_MAPPINGS_CONFIG
Nextflow stderr:
Check failure on line 1 in Parameters: --nf_core_pipeline viralrecon
github-actions / JUnit Test Report
Parameters: --nf_core_pipeline viralrecon
Assertion failed:
2 of 3 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 23.04.5
Launching `/home/runner/work/fetchngs/fetchngs/~/tests/b6119d1bc44a05070663cabe6d10e8c3/meta/mock.nf` [fabulous_brattain] DSL2 - revision: 1344f41b7b
[91/c42c3c] Submitted process > SRA:SRA_IDS_TO_RUNINFO (DRX026011)
[26/dde377] Submitted process > SRA:SRA_IDS_TO_RUNINFO (ERX1234253)
[e4/d2208c] Submitted process > SRA:SRA_IDS_TO_RUNINFO (SRX6725035)
[a3/3c10fc] Submitted process > SRA:SRA_RUNINFO_TO_FTP (1)
[8d/d01c3b] Submitted process > SRA:SRA_RUNINFO_TO_FTP (2)
[5a/ff587c] Submitted process > SRA:SRA_FASTQ_FTP (ERX1234253_ERR1160846)
[20/986733] Submitted process > SRA:SRA_FASTQ_FTP (DRX026011_DRR028935)
[d5/e35b1f] Submitted process > SRA:SRA_RUNINFO_TO_FTP (3)
[6a/448529] Submitted process > SRA:SRA_FASTQ_FTP (SRX6725035_SRR9984183)
[2d/3f2e3a] Submitted process > SRA:SRA_TO_SAMPLESHEET
[5a/bd8d5c] Submitted process > SRA:MULTIQC_MAPPINGS_CONFIG
Nextflow stderr:
Check failure on line 1 in Parameters: --nf_core_pipeline atacseq
github-actions / JUnit Test Report
Parameters: --nf_core_pipeline atacseq
Assertion failed:
2 of 3 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 23.04.5
Launching `/home/runner/work/fetchngs/fetchngs/~/tests/7c7c71c862b2f925a2446f34a598cef7/meta/mock.nf` [disturbed_morse] DSL2 - revision: 1344f41b7b
[d5/f4d527] Submitted process > SRA:SRA_IDS_TO_RUNINFO (DRX026011)
[49/8399d7] Submitted process > SRA:SRA_IDS_TO_RUNINFO (SRX6725035)
[cf/a1358d] Submitted process > SRA:SRA_IDS_TO_RUNINFO (ERX1234253)
[86/d2edd9] Submitted process > SRA:SRA_RUNINFO_TO_FTP (1)
[60/b6cb9d] Submitted process > SRA:SRA_RUNINFO_TO_FTP (2)
[6b/c3376c] Submitted process > SRA:SRA_FASTQ_FTP (DRX026011_DRR028935)
[81/9ae314] Submitted process > SRA:SRA_FASTQ_FTP (SRX6725035_SRR9984183)
[66/d67477] Submitted process > SRA:SRA_RUNINFO_TO_FTP (3)
[e1/c5e88b] Submitted process > SRA:SRA_FASTQ_FTP (ERX1234253_ERR1160846)
[c4/736ba5] Submitted process > SRA:SRA_TO_SAMPLESHEET
[0f/7bd2f9] Submitted process > SRA:MULTIQC_MAPPINGS_CONFIG
Nextflow stderr:
Check failure on line 1 in Parameters: --nf_core_pipeline taxprofiler
github-actions / JUnit Test Report
Parameters: --nf_core_pipeline taxprofiler
Assertion failed:
2 of 3 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 23.04.5
Launching `/home/runner/work/fetchngs/fetchngs/~/tests/373310d47d878172dd887ebfbc32cceb/meta/mock.nf` [cranky_pauling] DSL2 - revision: 1344f41b7b
[1f/d27c1d] Submitted process > SRA:SRA_IDS_TO_RUNINFO (DRX026011)
[8f/ea0266] Submitted process > SRA:SRA_IDS_TO_RUNINFO (SRX6725035)
[0b/cee9ca] Submitted process > SRA:SRA_IDS_TO_RUNINFO (ERX1234253)
[97/ddcd7e] Submitted process > SRA:SRA_RUNINFO_TO_FTP (1)
[09/997306] Submitted process > SRA:SRA_RUNINFO_TO_FTP (2)
[10/a25fe2] Submitted process > SRA:SRA_FASTQ_FTP (SRX6725035_SRR9984183)
[78/9b7344] Submitted process > SRA:SRA_FASTQ_FTP (DRX026011_DRR028935)
[b1/440b08] Submitted process > SRA:SRA_RUNINFO_TO_FTP (3)
[15/367c8d] Submitted process > SRA:SRA_FASTQ_FTP (ERX1234253_ERR1160846)
[0d/7f0057] Submitted process > SRA:SRA_TO_SAMPLESHEET
[71/318c30] Submitted process > SRA:MULTIQC_MAPPINGS_CONFIG
Nextflow stderr:
Check failure on line 1 in Parameters: default
github-actions / JUnit Test Report
Parameters: default
Assertion failed:
2 of 3 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 23.04.5
Launching `/home/runner/work/fetchngs/fetchngs/~/tests/cbeb2a3299add8cdc56b0eebd95d2296/meta/mock.nf` [serene_mahavira] DSL2 - revision: 1344f41b7b
[f9/e3507f] Submitted process > SRA:SRA_IDS_TO_RUNINFO (DRX026011)
[56/9fbb86] Submitted process > SRA:SRA_IDS_TO_RUNINFO (SRX6725035)
[72/a92b8b] Submitted process > SRA:SRA_IDS_TO_RUNINFO (ERX1234253)
[8c/a67638] Submitted process > SRA:SRA_RUNINFO_TO_FTP (1)
[88/67da91] Submitted process > SRA:SRA_RUNINFO_TO_FTP (2)
[f8/5fea49] Submitted process > SRA:SRA_FASTQ_FTP (SRX6725035_SRR9984183)
[82/614626] Submitted process > SRA:SRA_FASTQ_FTP (DRX026011_DRR028935)
[8c/cae14a] Submitted process > SRA:SRA_RUNINFO_TO_FTP (3)
[0e/9749b7] Submitted process > SRA:SRA_FASTQ_FTP (ERX1234253_ERR1160846)
[bb/12a036] Submitted process > SRA:SRA_TO_SAMPLESHEET
[d3/da17fe] Submitted process > SRA:MULTIQC_MAPPINGS_CONFIG
Nextflow stderr:
Loading