318 update for tes compliance #1026
GitHub Actions / JUnit Test Report
failed
Sep 17, 2024 in 0s
1 tests run, 0 passed, 0 skipped, 1 failed.
Annotations
github-actions / JUnit Test Report
nf.Parameters: --nf_core_pipeline viralrecon
Assertion failed:
1 of 3 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.08.0-edge
Launching `/home/runner/work/fetchngs/fetchngs/.nf-test-e98bf0373b6366d6dcbf2bff024f63cd.nf` [insane_rutherford] DSL2 - revision: 68dcf2aadf
Downloading plugin [email protected]
[98/241946] Submitted process > SRA:SRA_IDS_TO_RUNINFO (DRX026011)
[b0/646b18] Submitted process > SRA:SRA_IDS_TO_RUNINFO (SRX6725035)
[c8/792ae5] Submitted process > SRA:SRA_IDS_TO_RUNINFO (ERX1234253)
[54/d711c5] Submitted process > SRA:SRA_RUNINFO_TO_FTP (1)
[cb/bcf821] Submitted process > SRA:SRA_RUNINFO_TO_FTP (2)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[97/3cfc13] Submitted process > SRA:SRA_FASTQ_FTP (SRX6725035_SRR9984183)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[f4/bfa6b7] Submitted process > SRA:SRA_FASTQ_FTP (DRX026011_DRR028935)
[e6/bcd562] Submitted process > SRA:SRA_RUNINFO_TO_FTP (3)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[83/fd09ab] Submitted process > SRA:SRA_TO_SAMPLESHEET (SRX6725035_SRR9984183)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[20/fcb916] Submitted process > SRA:SRA_TO_SAMPLESHEET (DRX026011_DRR028935)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[26/ab0c4d] Submitted process > SRA:SRA_FASTQ_FTP (ERX1234253_ERR1160846)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[8b/9b677e] Submitted process > SRA:SRA_TO_SAMPLESHEET (ERX1234253_ERR1160846)
[b6/6b36ee] Submitted process > SRA:MULTIQC_MAPPINGS_CONFIG (1)
WARN: Process `SRA:MULTIQC_MAPPINGS_CONFIG` publishDir path contains a variable with a null value
Nextflow stderr:
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