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Allow user to avoid some steps in the pipeline when having a concatenated file ready #87

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danilodileo opened this issue Oct 16, 2024 · 0 comments
Open

Allow user to avoid some steps in the pipeline when having a concatenated file ready #87

danilodileo opened this issue Oct 16, 2024 · 0 comments
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enhancement New feature or request
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Magmap 1.0.1

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@danilodileo
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Description of feature

I will be good to have some parameters in magmap that allows the user to skip processes like SOURMASH when he/she already has a concatenated file of genomes.
e.g. --concatenated_genomes_input that will skip all the upstream modules
@danilodileo danilodileo added the enhancement New feature or request label Oct 16, 2024
@danilodileo danilodileo added this to the Magmap 1.0.1 milestone Oct 16, 2024
@danilodileo danilodileo self-assigned this Oct 16, 2024
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enhancement New feature or request
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Magmap 1.0.1
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