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Try alternative strategy for extracting tags #6581

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Try alternative strategy for extracting tags

Try alternative strategy for extracting tags #6581

Triggered via pull request February 15, 2024 18:08
@adamrtalbotadamrtalbot
synchronize #4928
adamrtalbot:new_tag_strategy
Status Failure
Total duration 6m 38s
Artifacts –

test.yml

on: pull_request
nf-test-changes
15s
nf-test-changes
pytest-changes
6s
pytest-changes
prettier
51s
prettier
editorconfig
14s
editorconfig
pre-commit
14s
pre-commit
Matrix: nf-test
Matrix: nf-core-lint-modules
Waiting for pending jobs
Matrix: pytest
Waiting for pending jobs
confirm-pass
0s
confirm-pass
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3 errors and 9 warnings
Run tests
Error when evaluating 'strategy' for job 'pytest'. .github/workflows/test.yml (Line: 210, Col: 16): Error parsing fromJson,.github/workflows/test.yml (Line: 210, Col: 16): Unexpected character encountered while parsing value: e. Path '', line 1, position 1.
confirm-pass
Process completed with exit code 1.
Run tests
Error when evaluating 'strategy' for job 'nf-core-lint'. .github/workflows/test.yml (Line: 165, Col: 13): Error parsing fromJson,.github/workflows/test.yml (Line: 165, Col: 13): Unexpected character encountered while parsing value: e. Path '', line 1, position 1.
pytest-changes
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: mirpedrol/paths-filter@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
pre-commit
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-test-changes
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-test (BAM_SORT_STATS_SAMTOOLS, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-test (BAM_SORT_STATS_SAMTOOLS, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, eWaterCycle/setup-apptainer@main, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-test (FASTP, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, eWaterCycle/setup-apptainer@main, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-test (FASTP, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-test (BAM_SORT_STATS_SAMTOOLS, conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-test (FASTP, conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.