Try alternative strategy for extracting tags #6584
Triggered via pull request
February 15, 2024 18:29
adamrtalbot
Status
Cancelled
Total duration
4m 59s
Artifacts
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test.yml
on: pull_request
Matrix: nf-test
Matrix: nf-core-lint-modules
Waiting for pending jobs
Matrix: nf-core-lint-modules
Waiting for pending jobs
Matrix: pytest
Waiting for pending jobs
confirm-pass
0s
Annotations
7 errors and 9 warnings
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nf-test (FASTP, docker)
The operation was canceled.
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nf-test (FASTP, conda)
The operation was canceled.
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nf-test (BAM_SORT_STATS_SAMTOOLS, conda)
The operation was canceled.
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confirm-pass
Process completed with exit code 1.
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Run tests
Error when evaluating 'strategy' for job 'nf-core-lint-workflows'. .github/workflows/test.yml (Line: 229, Col: 13): Error parsing fromJson,.github/workflows/test.yml (Line: 229, Col: 13): Unexpected character encountered while parsing value: b. Path '', line 1, position 1.
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Run tests
Error when evaluating 'strategy' for job 'pytest'. .github/workflows/test.yml (Line: 271, Col: 16): Error parsing fromJson,.github/workflows/test.yml (Line: 271, Col: 16): Error reading JToken from JsonReader. Path '', line 0, position 0.
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Run tests
Error when evaluating 'strategy' for job 'nf-core-lint-modules'. .github/workflows/test.yml (Line: 183, Col: 13): Error parsing fromJson,.github/workflows/test.yml (Line: 183, Col: 13): Error reading JToken from JsonReader. Path '', line 0, position 0.,.github/workflows/test.yml (Line: 184, Col: 13): Error parsing fromJson,.github/workflows/test.yml (Line: 184, Col: 13): Error parsing boolean value. Path '', line 1, position 3.
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pytest-changes
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: mirpedrol/paths-filter@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test-changes
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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pre-commit
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (BAM_SORT_STATS_SAMTOOLS, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, eWaterCycle/setup-apptainer@main, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (BAM_SORT_STATS_SAMTOOLS, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (FASTP, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, eWaterCycle/setup-apptainer@main, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (FASTP, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (FASTP, conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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nf-test (BAM_SORT_STATS_SAMTOOLS, conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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