Update mgikit nf.test

nf-core · Feb 27, 2025 · 6951d0e · 6951d0e
1 parent c238ca2
commit 6951d0e
Showing 1 changed file with 50 additions and 41 deletions.
diff --git a/modules/nf-core/mgikit/demultiplex/tests/main.nf.test b/modules/nf-core/mgikit/demultiplex/tests/main.nf.test
@@ -38,35 +38,40 @@ nextflow_process {
         }
 
         then {
-            assert process.success
-            with(process.out) {
-                assert fastq.size() == 1
-                assert fastq[0][1].any { file(it).name.endsWith(".fastq.gz") }
-
-                assert undetermined.size() == 1
-                assert undetermined[0][1].any { file(it).name.startsWith("Undetermined") && file(it).name.endsWith(".fastq.gz") }
-
-                assert ambiguous.size() == 0
-
-                assert undetermined_reports.size() == 1
-                assert undetermined_reports[0][1].any { file(it).name.contains("mgikit.undetermined_barcode") }
-
-                assert ambiguous_reports.size() == 0
-
-                assert general_info_reports.size() == 1
-                assert file(general_info_reports[0][1]).name.contains("mgikit.general")
-
-                assert index_reports.size() == 1
-                assert file(index_reports[0][1]).name.contains("mgikit.info")
-
-                assert sample_stat_reports.size() == 1
-                assert file(sample_stat_reports[0][1]).name.contains("mgikit.sample_stats")
-
-                assert qc_reports.size() == 1
-                assert qc_reports[0][1].size() == 3
-
-                assert file(versions[0]).text.contains("mgikit")
-            }
+            assertAll(
+                {assert process.success},
+                {assert snapshot(process.out).match()},
+                {
+                    with(process.out) {
+                        assert fastq.size() == 1
+                        assert fastq[0][1].any { file(it).name.endsWith(".fastq.gz") }
+
+                        assert undetermined.size() == 1
+                        assert undetermined[0][1].any { file(it).name.startsWith("Undetermined") && file(it).name.endsWith(".fastq.gz") }
+
+                        assert ambiguous.size() == 0
+
+                        assert undetermined_reports.size() == 1
+                        assert undetermined_reports[0][1].any { file(it).name.contains("mgikit.undetermined_barcode") }
+
+                        assert ambiguous_reports.size() == 0
+
+                        assert general_info_reports.size() == 1
+                        assert file(general_info_reports[0][1]).name.contains("mgikit.general")
+
+                        assert index_reports.size() == 1
+                        assert file(index_reports[0][1]).name.contains("mgikit.info")
+
+                        assert sample_stat_reports.size() == 1
+                        assert file(sample_stat_reports[0][1]).name.contains("mgikit.sample_stats")
+
+                        assert qc_reports.size() == 1
+                        assert qc_reports[0][1].size() == 3
+
+                        assert file(versions[0]).text.contains("mgikit")
+                    }
+                }
+            )
         }
 
     }
@@ -88,18 +93,22 @@ nextflow_process {
         }
 
         then {
-            assert process.success
-            with(process.out) {
-                assert fastq.size() == 1
-                assert fastq[0][1].size() == 4
-                assert undetermined.size() == 1
-                assert undetermined[0][1].size() == 2
-                assert general_info_reports.size() == 1
-                assert index_reports.size() == 1
-                assert sample_stat_reports.size() == 1
-                assert file(versions[0]).text.contains("mgikit")
-            }
+            assertAll(
+                {assert process.success},
+                {
+                    with(process.out) {
+                        assert fastq.size() == 1
+                        assert fastq[0][1].size() == 4
+                        assert undetermined.size() == 1
+                        assert undetermined[0][1].size() == 2
+                        assert general_info_reports.size() == 1
+                        assert index_reports.size() == 1
+                        assert sample_stat_reports.size() == 1
+                        assert file(versions[0]).text.contains("mgikit")
+                    }
+                }
+            )
         }
 
     }
-}
+}