Fix MEGAHIT module: Modified syntax to accept --out-prefix variable d…

…ownstream
nf-core · Feb 27, 2025 · cd4a19d · cd4a19d
1 parent dd32ce5
commit cd4a19d
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/modules/nf-core/megahit/main.nf b/modules/nf-core/megahit/main.nf
@@ -28,9 +28,9 @@ process MEGAHIT {
     def reads_command = meta.single_end || !reads2 ? "-r ${reads1.join(',')}" : "-1 ${reads1.join(',')} -2 ${reads2.join(',')}"
     """
     megahit \\
-        ${reads_command} \\
         ${args} \\
         -t ${task.cpus} \\
+        ${reads_command} \\
         --out-prefix ${prefix}
 
     pigz \\