Update blat to use ucsc-blat recipe(s) (#7519)

* Update blat to use ucsc-blat recipe(s) * Adjust snapshots
nf-core · Feb 27, 2025 · f113943 · f113943
1 parent 470ac76
commit f113943
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Showing 3 changed files with 8 additions and 8 deletions.
diff --git a/modules/nf-core/blat/environment.yml b/modules/nf-core/blat/environment.yml
@@ -4,4 +4,4 @@ channels:
   - conda-forge
   - bioconda
 dependencies:
-  - bioconda::blat=36
+  - bioconda::ucsc-blat=472
diff --git a/modules/nf-core/blat/main.nf b/modules/nf-core/blat/main.nf
@@ -4,8 +4,8 @@ process BLAT {
 
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/blat:36--0':
-        'biocontainers/blat:36--0' }"
+        'https://depot.galaxyproject.org/singularity/ucsc-blat:472--h9b8f530_0':
+        'biocontainers/ucsc-blat:472--h664eb37_1' }"
 
     input:
     tuple val(meta) , path(query)

diff --git a/modules/nf-core/blat/tests/main.nf.test.snap b/modules/nf-core/blat/tests/main.nf.test.snap
@@ -12,7 +12,7 @@
                     ]
                 ],
                 "1": [
-                    "versions.yml:md5,d9cde833b3f9cf6d359ef0f8a119380a"
+                    "versions.yml:md5,966f3e3f6584821f0394b815a2b42d84"
                 ],
                 "psl": [
                     [
@@ -24,7 +24,7 @@
                     ]
                 ],
                 "versions": [
-                    "versions.yml:md5,d9cde833b3f9cf6d359ef0f8a119380a"
+                    "versions.yml:md5,966f3e3f6584821f0394b815a2b42d84"
                 ]
             }
         ],
@@ -47,7 +47,7 @@
                     ]
                 ],
                 "1": [
-                    "versions.yml:md5,d9cde833b3f9cf6d359ef0f8a119380a"
+                    "versions.yml:md5,966f3e3f6584821f0394b815a2b42d84"
                 ],
                 "psl": [
                     [
@@ -59,7 +59,7 @@
                     ]
                 ],
                 "versions": [
-                    "versions.yml:md5,d9cde833b3f9cf6d359ef0f8a119380a"
+                    "versions.yml:md5,966f3e3f6584821f0394b815a2b42d84"
                 ]
             }
         ],
@@ -69,4 +69,4 @@
         },
         "timestamp": "2024-09-06T20:38:09.736595"
     }
-}
+}