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New module: anndata/getsize module #6925
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Generally fine.
It would be good to put a h5ad file into the modules test-datasets though, are you able to do that?
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Looks good to me now, thanks for putting the file into the modules testdata repo.
Co-authored-by: Simon Pearce <[email protected]>
Adding the module
anndata/getsize
which outputs the size of an anndata object.This can then be used to add the size of the anndata object to its meta map:
ANNDATA_GETSIZE.out.size.map{meta, txt -> [meta, txt.text.toInteger()]}
Currently there is no proper
H5AD
data on thetest-datasets
modules branch. For now I used the files from thescdownstream
pipeline, but I will try to add proper test data to the modules asap.PR checklist
Closes #6923
versions.yml
file.label
nf-core modules test <MODULE> --profile docker
nf-core modules test <MODULE> --profile singularity
nf-core modules test <MODULE> --profile conda