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bioformats2raw module #7518

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CaroAMN wants to merge 1 commit into nf-core:master from CaroAMN:bioformats2raw

+304 −0

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CaroAMN commented Feb 26, 2025

PR checklist

Closes #7422

This comment contains a description of changes (with reason).
If you've added a new tool - have you followed the module conventions in the contribution docs
Remove all TODO statements.
Emit the versions.yml file.
Follow the naming conventions.
Follow the parameters requirements.
Follow the input/output options guidelines.
Add a resource label
Use BioConda and BioContainers if possible to fulfil software requirements.

new modules: bioformats2raw

I used now a seqera container: community.wave.seqera.io/library/bioformats2raw:0.9.4--3eec45888b3759e5

not sure if this is correct in the module main.nf
nf-test passes with docker

The tool is not in conda-forge or bioconda but from the ome channel ( open microscopy environment ) and i get errors from linting:

The environment.yml of the module bioformats2raw is not valid: 'ome' is not one of ['bioconda', 'conda-forge'].


          bioformats2raw module

55d4f34

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