diff --git a/README.md b/README.md index 378d11b71..1dd3ebc4b 100644 --- a/README.md +++ b/README.md @@ -527,7 +527,7 @@ The folder is structured in the following way: Any nonspecific-pangenome file is - vcf: - NA03697B2_new.pbmm2.repeats.vcf.gz: VCF file associated with the NA03697B2_downsampled.pbmm2.repeats.bam BAM file, generated from PacBio PBSV (version 2.9.0 - default settings) - NA03697B2_downsampled.pbmm2.repeats.vcf.gz: Index for NA03697B2_downsampled.pbmm2.repeats.vcf.gz - - popgen: + - popgen: - plink_simulated.bed: case-control simulated variants dataset in PLINK binary format - plink_simulated.fam: case-control simulated variants dataset in PLINK binary format - plink_simulated.bim: case-control simulated variants dataset in PLINK binary format @@ -570,6 +570,10 @@ The folder is structured in the following way: Any nonspecific-pangenome file is - test.cram: The converted CRAM from the BAM file - test.cram.crai: The index of the CRAM file - test.bed: A BED file containing only the regions from chr11 + + - scrnaseq: + - h5ad: + - pbmc1k.h5ad: Downloaded with `scanpy.datasets.pbmc3k()` and subsampled to 1,000 cells and genes. `adata.obs` contains `batch`column with batches '1', '2', and '3' - mus_musculus - mageck diff --git a/data/genomics/homo_sapiens/scrnaseq/h5ad/pbmc1k.h5ad b/data/genomics/homo_sapiens/scrnaseq/h5ad/pbmc1k.h5ad new file mode 100644 index 000000000..d4abdc146 Binary files /dev/null and b/data/genomics/homo_sapiens/scrnaseq/h5ad/pbmc1k.h5ad differ