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Choose Head Size Based off of age of Participant #198

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audreymhoughton opened this issue Mar 25, 2022 · 3 comments
Open

Choose Head Size Based off of age of Participant #198

audreymhoughton opened this issue Mar 25, 2022 · 3 comments
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enhancement New feature or request

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@audreymhoughton
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A short summary of what you would like to see in NiBabies.

Scale brain size flag based off of the age of the participant. Will need to find or make a table for the best brain size for each age.

Do you have any interest in helping implement the feature?

Yes, but I would need guidance

Add any additional information or context about the request here.

I think we should be able to help find / make a table. We should have a resource we can use through the BCP data. I don't have the bandwidth to help add into the code itself though.

@audreymhoughton audreymhoughton added the enhancement New feature or request label Mar 25, 2022
@tsalo
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tsalo commented Feb 12, 2024

What about calculating the head size from the anatomical image, as we do in XCP-D?

@mgxd
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mgxd commented Feb 13, 2024

@tsalo are you referring to this function? Looks interesting and reasonable to add

@tsalo
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tsalo commented Feb 13, 2024

Absolutely! There are probably better ways to do it than assuming the brain is a sphere, but that function seems to work fairly well (not that I've done rigorous testing).

effigies added a commit to nipreps/fmriprep that referenced this issue Mar 4, 2024
Closes #3231.

## Changes proposed in this pull request

- Add metadata, including Units, for motion parameters (6 basic
parameters and FD).
- I included FD because it might be good to log the head radius that is
used to calculate it at some point (e.g., if
nipreps/nibabies#198 moves forward)

## Documentation that should be reviewed

none

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Co-authored-by: Chris Markiewicz <[email protected]>
@mgxd mgxd reopened this Apr 10, 2024
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3 participants