diff --git a/niworkflows/func/util.py b/niworkflows/func/util.py index dbfb0769984..7f6e4b626d2 100644 --- a/niworkflows/func/util.py +++ b/niworkflows/func/util.py @@ -95,8 +95,7 @@ def init_bold_reference_wf( Indicates whether the ``pre_mask`` input will be set (and thus, step 1 should be skipped). multiecho : :obj:`bool` - If multiecho data was supplied, data from the first echo - will be selected + If multiecho data was supplied, data from the first echo will be selected name : :obj:`str` Name of workflow (default: ``bold_reference_wf``) gen_report : :obj:`bool` @@ -106,6 +105,8 @@ def init_bold_reference_wf( ------ bold_file : str BOLD series NIfTI file + all_bold_files : str + Validated and header-corrected BOLD series; multiple if multi-echo bold_mask : bool A tentative brain mask to initialize the workflow (requires ``pre_mask`` parameter set ``True``). @@ -160,6 +161,7 @@ def init_bold_reference_wf( niu.IdentityInterface( fields=[ "bold_file", + "all_bold_files", "raw_ref_image", "skip_vols", "algo_dummy_scans", @@ -212,6 +214,7 @@ def init_bold_reference_wf( (gen_avg, outputnode, [("out_file", "raw_ref_image")]), (get_dummy, outputnode, [("n_dummy", "algo_dummy_scans")]), (val_bold, outputnode, [(("out_file", _pop), "bold_file"), + ("out_file", "all_bold_files"), (("out_report", _pop), "validation_report")]), (enhance_and_skullstrip_bold_wf, outputnode, [ ("outputnode.bias_corrected_file", "ref_image"),