diff --git a/CHANGES.rst b/CHANGES.rst index 942b3102ab0..71dd215603a 100644 --- a/CHANGES.rst +++ b/CHANGES.rst @@ -1,5 +1,5 @@ -1.4.0 (TBD) -=========== +1.4.0 (September 1, 2021) +========================= First release in the 1.4.x series. This release includes enhancements and bug-fixes towards the release of the first beta version of *dMRIPrep*. @@ -22,21 +22,19 @@ them: *NiRodents* and *NiBabies* (and their corresponding *fMRIPrep* extensions) * *You must cause any modified files to carry prominent notices stating that You changed the files*. -A list of prominent changes follows: +A list of prominent changes can be found below. (With thanks to Lea Waller for the contributions) -1.4.0rc6 (May 17, 2021) ------------------------ +* DOC: Ensure copyright notice in all headers' comment (#635) +* FIX: Set slope and intercept to 1/0 if not otherwise provided (#649) +* FIX: ``DerivativesDataSink`` warning when it has multiple source files (#647) +* FIX: ``FSDetectInputs`` mutually exclusive options for ``ReconAll`` (#646) +* FIX: Remove pandas warning about use of keyword arguments (#645) +* FIX: Improve ``SimpleBeforeAfterRPT`` contour visibility (#643) * FIX: ``DerivativesDataSink`` dismissing entity writing reportlet (#638) +* FIX: Ensure ``IntensityClip`` input is a 3D file (#621) * FIX: Limit memory usage in ``EstimateReferenceImage`` (#629) * FIX: Purge removed ``--disable`` flag from *svgo* call (#626) * FIX: Readd ``sbref_file`` input to reference volume interface (#624) -* ENH: Update visual report specification with fieldmaps (#634) -* ENH: Expose the output of the ``ValidateImage`` node as an output in EPI reference workflow (#636) -* DOC: Ensure copyright notice in all headers' comment (#635) -* MAINT: Pin *svgutils* to previous versions (#596) - -Prior 1.4.0rc6 --------------- * FIX: Update svgutils after breaking API changes (#620) * FIX: Address issues with ``RobustAverage`` global signal measurement (#607) * FIX: ``NonsteadyStatesDetector`` wrongly using Nipype's ``is_outlier`` (#605) @@ -46,11 +44,15 @@ Prior 1.4.0rc6 * FIX: Allow omission of ```` for template normalization (#582) * FIX: Include ``_T2starw`` ``_MTw`` and ``_TSE``-suffixes in ``build_path`` options (#584) * FIX: ``DerivativesDataSink`` warning when it has multiple source files (#573) +* ENH: Allow ``SimpleBeforeAfterRPT`` plotting of image rotated to cardinal axes (#650) +* ENH: Update visual report specification with fieldmaps (#634) +* ENH: Expose the output of the ``ValidateImage`` node as an output in EPI reference workflow (#636) * ENH: Add an inversion operation to ``IntensityClip`` (#616) * ENH: Cross-cutting (modalities, species) workflow to generate EPI references (#610) * ENH: Add a ``RobustAverage`` interface and split volume selection (#602) * ENH: Revise some patterns of the ``BIDSLayout`` config to aid *SDCFlows* new API (#585) * ENH: Upstream *fMRIPrep*'s ``init_bbreg_wf`` to integrate it in *dMRIPrep* (#586) +* MAINT: Pin *svgutils* to previous versions (#596) * MAINT: Drop gh-pages history, reducing repository size (#622) * MAINT: Add DS030 dataset, with clipped (55 timepoints) BOLD data (#609) * MAINT: Migrate ``ds003_downsampled`` to ``nipreps-data`` (#608) @@ -58,6 +60,7 @@ Prior 1.4.0rc6 * MAINT: Refactor structure of interfaces (#603) * MAINT: Drop Python 3.6, test setuptools builds, pip installations, and revise Docker pinned versions (#593) * MAINT: CircleCI housekeeping (#580) +* RF: Write derivatives once, using deterministic gzip settings (#641) .. caution:: @@ -138,7 +141,7 @@ Addresses longstanding issues in the anatomical MRI brain extraction workflow. 1.3.0 (September 11, 2020) ========================== First release in the 1.3.x series. -This release includes enhancements and bug-fixes towards the release of the first +This release includes enhancements and bug-fixes towards the release of the first LTS (*long-term support*) version of *fMRIPrep*. *PyBIDS* has been revised to use more recent versions, a series of ANTs' interfaces have been deemed ready to upstream into *Nipype*, and several improvements regarding