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nmrCV.ttl
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@prefix : <http://purl.obolibrary.org/obo/nmrCV.ttl#> .
@prefix dce: <http://purl.org/dc/elements/1.1/> .
@prefix obo: <http://purl.obolibrary.org/obo/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix swrl: <http://www.w3.org/2003/11/swrl#> .
@prefix swrla: <http://swrl.stanford.edu/ontologies/3.3/swrla.owl#> .
@prefix swrlb: <http://www.w3.org/2003/11/swrlb#> .
@prefix dcterms: <http://purl.org/dc/terms/> .
@prefix protege: <http://protege.stanford.edu/plugins/owl/protege#> .
@prefix subsets: <http://purl.obolibrary.org/obo/ro/subsets#> .
@prefix oboInOwl: <http://www.geneontology.org/formats/oboInOwl#> .
@base <http://purl.obolibrary.org/obo/nmrCV.ttl> .
<http://purl.obolibrary.org/obo/nmrCV.ttl> rdf:type owl:Ontology ;
owl:versionIRI <http://purl.obolibrary.org/obo/nmrCV/releases/2023-11-23/nmrCV.ttl> ;
dcterms:description "This artefact is an MSI-approved controlled vocabulary primarily developed under COSMOS EU and PhenoMeNal EU governance. The nmrCV is supporting the nmrML XML format with standardized terms. nmrML is a vendor agnostic open access NMR raw data standard. Its primaly role is analogous to the mzCV for the PSI-approved mzML XML format. It uses BFO2.0 as its Top level. This CV was derived from two predecessors (The NMR CV from the David Wishart Group, developed by Joseph Cruz) and the MSI nmr CV developed by Daniel Schober at the EBI. This simple taxonomy of terms (no DL semantics used) serves the nuclear magnetic resonance markup language (nmrML) with meaningful descriptors to amend the nmrML xml file with CV terms. Metabolomics scientists are encouraged to use this CV to annotrate their raw and experimental context data, i.e. within nmrML. The approach to have an exchange syntax mixed of an xsd and CV stems from the PSI mzML effort. The reason to branch out from an xsd into a CV is, that in areas where the terminology is likely to change faster than the nmrML xsd could be updated and aligned, an externally and decentrallised maintained CV can accompensate for such dynamics in a more flexible way. A second reason for this set-up is that semantic validity of CV terms used in an nmrML XML instance (allowed CV terms, position/relation to each other, cardinality) can be validated by rule-based proprietary validators: By means of cardinality specifications and XPath expressions defined in an XML mapping file (an instances of the CvMappingRules.xsd ), one can define what ontology terms are allowed in a specific location of the data model." ;
dcterms:license <https://creativecommons.org/publicdomain/mark/1.0/> ;
dcterms:title "nuclear magnetic resonance CV" ;
owl:versionInfo "2023-11-23" .
#################################################################
# Annotation properties
#################################################################
### http://protege.stanford.edu/plugins/owl/protege#defaultLanguage
protege:defaultLanguage rdf:type owl:AnnotationProperty .
### http://purl.obolibrary.org/obo/BFO_0000179
obo:BFO_0000179 rdf:type owl:AnnotationProperty ;
obo:IAO_0000115 "Relates an entity in the ontology to the name of the variable that is used to represent it in the code that generates the BFO OWL file from the lispy specification."@en ;
obo:IAO_0000232 "Really of interest to developers only"@en ;
rdfs:label "BFO OWL specification label"@en ;
rdfs:subPropertyOf rdfs:label .
### http://purl.obolibrary.org/obo/BFO_0000180
obo:BFO_0000180 rdf:type owl:AnnotationProperty ;
obo:IAO_0000115 "Relates an entity in the ontology to the term that is used to represent it in the the CLIF specification of BFO2"@en ;
obo:IAO_0000119 "Person:Alan Ruttenberg" ;
obo:IAO_0000232 "Really of interest to developers only"@en ;
rdfs:label "BFO CLIF specification label"@en ;
rdfs:subPropertyOf rdfs:label .
### http://purl.obolibrary.org/obo/IAO_0000111
obo:IAO_0000111 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "editor preferred term"@en ;
obo:IAO_0000114 obo:IAO_0000122 ;
obo:IAO_0000115 "The concise, meaningful, and human-friendly name for a class or property preferred by the ontology developers. (US-English)"@en ;
obo:IAO_0000117 "PERSON:Daniel Schober"@en ;
obo:IAO_0000119 "GROUP:OBI:<http://purl.obolibrary.org/obo/obi>"@en ;
rdfs:isDefinedBy obo:iao.owl ;
rdfs:label "editor preferred term"@en .
### http://purl.obolibrary.org/obo/IAO_0000112
obo:IAO_0000112 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "example of usage"@en ;
obo:IAO_0000114 obo:IAO_0000122 ;
obo:IAO_0000115 "A phrase describing how a term should be used and/or a citation to a work which uses it. May also include other kinds of examples that facilitate immediate understanding, such as widely know prototypes or instances of a class, or cases where a relation is said to hold."@en ;
obo:IAO_0000117 "PERSON:Daniel Schober"@en ;
obo:IAO_0000119 "GROUP:OBI:<http://purl.obolibrary.org/obo/obi>"@en ;
rdfs:isDefinedBy obo:iao.owl ;
rdfs:label "example of usage"@en .
### http://purl.obolibrary.org/obo/IAO_0000113
obo:IAO_0000113 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "in branch"@en ;
obo:IAO_0000115 "An annotation property indicating which module the terms belong to. This is currently experimental and not implemented yet."@en ;
obo:IAO_0000117 "GROUP:OBI"@en ;
obo:IAO_0000119 "OBI_0000277"@en ;
rdfs:label "in branch"@en .
### http://purl.obolibrary.org/obo/IAO_0000114
obo:IAO_0000114 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "has curation status"@en ;
obo:IAO_0000117 "PERSON:Alan Ruttenberg"@en ,
"PERSON:Bill Bug"@en ,
"PERSON:Melanie Courtot"@en ;
rdfs:label "has curation status"@en .
### http://purl.obolibrary.org/obo/IAO_0000115
obo:IAO_0000115 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "definition"@en ;
obo:IAO_0000114 obo:IAO_0000122 ;
obo:IAO_0000115 "The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions."@en ;
obo:IAO_0000116 """2012-04-05:
Barry Smith
The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible.
Can you fix to something like:
A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property.
Alan Ruttenberg
Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria.
On the specifics of the proposed definition:
We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition.
Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable.
We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with."""@en ;
obo:IAO_0000117 "PERSON:Daniel Schober"@en ;
obo:IAO_0000119 "GROUP:OBI:<http://purl.obolibrary.org/obo/obi>"@en ;
rdfs:isDefinedBy obo:iao.owl ;
rdfs:label "definition"@en .
### http://purl.obolibrary.org/obo/IAO_0000116
obo:IAO_0000116 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "editor note"@en ;
obo:IAO_0000114 obo:IAO_0000122 ;
obo:IAO_0000115 "An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology."@en ;
obo:IAO_0000117 "PERSON:Daniel Schober"@en ;
obo:IAO_0000119 "GROUP:OBI:<http://purl.obofoundry.org/obo/obi>"@en ;
rdfs:isDefinedBy obo:iao.owl ;
rdfs:label "editor note"@en .
### http://purl.obolibrary.org/obo/IAO_0000117
obo:IAO_0000117 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "term editor"@en ;
obo:IAO_0000114 obo:IAO_0000122 ;
obo:IAO_0000115 "Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people"@en ;
obo:IAO_0000116 "20110707, MC: label update to term editor and definition modified accordingly. See https://github.com/information-artifact-ontology/IAO/issues/115."@en ;
obo:IAO_0000117 "PERSON:Daniel Schober"@en ;
obo:IAO_0000119 "GROUP:OBI:<http://purl.obolibrary.org/obo/obi>"@en ;
rdfs:isDefinedBy obo:iao.owl ;
rdfs:label "term editor"@en .
### http://purl.obolibrary.org/obo/IAO_0000118
obo:IAO_0000118 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "alternative label"@en ;
obo:IAO_0000114 obo:IAO_0000125 ;
obo:IAO_0000115 "A label for a class or property that can be used to refer to the class or property instead of the preferred rdfs:label. Alternative labels should be used to indicate community- or context-specific labels, abbreviations, shorthand forms and the like."@en ;
obo:IAO_0000117 "OBO Operations committee" ,
"PERSON:Daniel Schober"@en ;
obo:IAO_0000119 "GROUP:OBI:<http://purl.obolibrary.org/obo/obi>"@en ;
rdfs:comment "Consider re-defing to: An alternative name for a class or property which can mean the same thing as the preferred name (semantically equivalent, narrow, broad or related)." ;
rdfs:isDefinedBy obo:iao.owl ;
rdfs:label "alternative label"@en ,
"alternative term"@en .
### http://purl.obolibrary.org/obo/IAO_0000119
obo:IAO_0000119 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "definition source"@en ;
obo:IAO_0000114 obo:IAO_0000122 ;
obo:IAO_0000115 "Formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007"@en ;
obo:IAO_0000117 "PERSON:Daniel Schober"@en ;
obo:IAO_0000119 "Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w"@en ,
"GROUP:OBI:<http://purl.obolibrary.org/obo/obi>"@en ;
rdfs:isDefinedBy obo:iao.owl ;
rdfs:label "definition source"@en .
### http://purl.obolibrary.org/obo/IAO_0000231
obo:IAO_0000231 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "has obsolescence reason"@en ;
obo:IAO_0000115 "Relates an annotation property to an obsolescence reason. The values of obsolescence reasons come from a list of predefined terms, instances of the class obsolescence reason specification."@en ;
obo:IAO_0000117 "PERSON:Alan Ruttenberg"@en ,
"PERSON:Melanie Courtot"@en ;
rdfs:label "has obsolescence reason"@en .
### http://purl.obolibrary.org/obo/IAO_0000232
obo:IAO_0000232 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "curator note"@en ;
obo:IAO_0000114 obo:IAO_0000122 ;
obo:IAO_0000115 "An administrative note of use for a curator but of no use for a user"@en ;
obo:IAO_0000117 "PERSON:Alan Ruttenberg"@en ;
rdfs:isDefinedBy obo:iao.owl ;
rdfs:label "curator note"@en .
### http://purl.obolibrary.org/obo/IAO_0000233
obo:IAO_0000233 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "term tracker item"@en ;
obo:IAO_0000112 "the URI for an OBI Terms ticket at sourceforge, such as https://sourceforge.net/p/obi/obi-terms/772/"@en ;
obo:IAO_0000114 obo:IAO_0000125 ;
obo:IAO_0000115 "An IRI or similar locator for a request or discussion of an ontology term."@en ;
obo:IAO_0000117 "Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg"@en ;
obo:IAO_0000119 "Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg"@en ;
rdfs:comment "The 'tracker item' can associate a tracker with a specific ontology term."@en ;
rdfs:label "term tracker item"@en .
### http://purl.obolibrary.org/obo/IAO_0000234
obo:IAO_0000234 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "ontology term requester"@en ;
obo:IAO_0000114 obo:IAO_0000125 ;
obo:IAO_0000115 "The name of the person, project, or organization that motivated inclusion of an ontology term by requesting its addition."@en ;
obo:IAO_0000117 "Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg"@en ;
obo:IAO_0000119 "Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg"@en ;
rdfs:comment "The 'term requester' can credit the person, organization or project who request the ontology term." ;
rdfs:label "ontology term requester"@en .
### http://purl.obolibrary.org/obo/IAO_0000411
obo:IAO_0000411 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "is denotator type"@en ;
obo:IAO_0000115 "Relates an class defined in an ontology, to the type of it's denotator"@en ;
obo:IAO_0000116 "In OWL 2 add AnnotationPropertyRange('is denotator type' 'denotator type')"@en ;
obo:IAO_0000117 "Alan Ruttenberg"@en ;
rdfs:label "is denotator type"@en .
### http://purl.obolibrary.org/obo/IAO_0000412
obo:IAO_0000412 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "imported from"@en ;
obo:IAO_0000114 obo:IAO_0000125 ;
obo:IAO_0000115 "For external terms/classes, the ontology from which the term was imported"@en ;
obo:IAO_0000117 "PERSON:Alan Ruttenberg"@en ,
"PERSON:Melanie Courtot"@en ;
obo:IAO_0000119 "GROUP:OBI:<http://purl.obolibrary.org/obo/obi>"@en ;
rdfs:isDefinedBy obo:iao.owl ;
rdfs:label "imported from"@en .
### http://purl.obolibrary.org/obo/IAO_0000424
obo:IAO_0000424 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "expand expression to"@en ;
obo:IAO_0000112 """ObjectProperty: RO_0002104
Label: has plasma membrane part
Annotations: IAO_0000424 \"http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.org/obo/owl/GO#GO_0005886 and http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)\"
"""@en ;
obo:IAO_0000115 "A macro expansion tag applied to an object property (or possibly a data property) which can be used by a macro-expansion engine to generate more complex expressions from simpler ones"@en ;
obo:IAO_0000117 "Chris Mungall"@en ;
rdfs:label "expand expression to"@en .
### http://purl.obolibrary.org/obo/IAO_0000425
obo:IAO_0000425 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "expand assertion to"@en ;
obo:IAO_0000112 """ObjectProperty: RO???
Label: spatially disjoint from
Annotations: expand_assertion_to \"DisjointClasses: (http://purl.obolibrary.org/obo/BFO_0000051 some ?X) (http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)\"
"""@en ;
obo:IAO_0000115 "A macro expansion tag applied to an annotation property which can be expanded into a more detailed axiom."@en ;
obo:IAO_0000117 "Chris Mungall"@en ;
rdfs:label "expand assertion to"@en .
### http://purl.obolibrary.org/obo/IAO_0000426
obo:IAO_0000426 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "first order logic expression"@en ;
obo:IAO_0000117 "PERSON:Alan Ruttenberg"@en ;
rdfs:label "first order logic expression"@en .
### http://purl.obolibrary.org/obo/IAO_0000427
obo:IAO_0000427 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "antisymmetric property"@en ;
obo:IAO_0000112 "part_of antisymmetric property xsd:true"@en ;
obo:IAO_0000115 "Use boolean value xsd:true to indicate that the property is an antisymmetric property"@en ;
obo:IAO_0000117 "Alan Ruttenberg"@en ;
rdfs:label "antisymmetric property"@en ;
rdfs:subPropertyOf obo:OMO_0001001 .
### http://purl.obolibrary.org/obo/IAO_0000589
obo:IAO_0000589 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "OBO foundry unique label"@en ;
obo:IAO_0000114 obo:IAO_0000125 ;
obo:IAO_0000115 "An alternative name for a class or property which is unique across the OBO Foundry."@en ;
obo:IAO_0000116 "The intended usage of that property is as follow: OBO foundry unique labels are automatically generated based on regular expressions provided by each ontology, so that SO could specify unique label = 'sequence ' + [label], etc. , MA could specify 'mouse + [label]' etc. Upon importing terms, ontology developers can choose to use the 'OBO foundry unique label' for an imported term or not. The same applies to tools ."@en ;
obo:IAO_0000117 "PERSON:Alan Ruttenberg"@en ,
"PERSON:Bjoern Peters"@en ,
"PERSON:Chris Mungall"@en ,
"PERSON:Melanie Courtot"@en ;
obo:IAO_0000119 "GROUP:OBO Foundry <http://obofoundry.org/>"@en ;
rdfs:label "OBO foundry unique label"@en .
### http://purl.obolibrary.org/obo/IAO_0000596
obo:IAO_0000596 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "has ID digit count"@en ;
obo:IAO_0000112 """Ontology: <http://purl.obolibrary.org/obo/ro/idrange/>
Annotations:
'has ID prefix': \"http://purl.obolibrary.org/obo/RO_\"
'has ID digit count' : 7,
rdfs:label \"RO id policy\"
'has ID policy for': \"RO\""""@en ;
obo:IAO_0000115 "Relates an ontology used to record id policy to the number of digits in the URI. The URI is: the 'has ID prefix\" annotation property value concatenated with an integer in the id range (left padded with \"0\"s to make this many digits)"@en ;
obo:IAO_0000117 "Person:Alan Ruttenberg"@en ;
rdfs:label "has ID digit count"@en .
### http://purl.obolibrary.org/obo/IAO_0000597
obo:IAO_0000597 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "has ID range allocated"@en ;
obo:IAO_0000112 """Datatype: idrange:1
Annotations: 'has ID range allocated to': \"Chris Mungall\"
EquivalentTo: xsd:integer[> 2151 , <= 2300]
"""@en ;
obo:IAO_0000115 "Relates a datatype that encodes a range of integers to the name of the person or organization who can use those ids constructed in that range to define new terms"@en ;
obo:IAO_0000117 "Person:Alan Ruttenberg"@en ;
rdfs:label "has ID range allocated to"@en .
### http://purl.obolibrary.org/obo/IAO_0000598
obo:IAO_0000598 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "has ID policy for"@en ;
obo:IAO_0000112 """Ontology: <http://purl.obolibrary.org/obo/ro/idrange/>
Annotations:
'has ID prefix': \"http://purl.obolibrary.org/obo/RO_\"
'has ID digit count' : 7,
rdfs:label \"RO id policy\"
'has ID policy for': \"RO\""""@en ;
obo:IAO_0000115 "Relating an ontology used to record id policy to the ontology namespace whose policy it manages"@en ;
obo:IAO_0000117 "Person:Alan Ruttenberg"@en ;
rdfs:label "has ID policy for"@en .
### http://purl.obolibrary.org/obo/IAO_0000599
obo:IAO_0000599 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "has ID prefix"@en ;
obo:IAO_0000112 """Ontology: <http://purl.obolibrary.org/obo/ro/idrange/>
Annotations:
'has ID prefix': \"http://purl.obolibrary.org/obo/RO_\"
'has ID digit count' : 7,
rdfs:label \"RO id policy\"
'has ID policy for': \"RO\""""@en ;
obo:IAO_0000115 "Relates an ontology used to record id policy to a prefix concatenated with an integer in the id range (left padded with \"0\"s to make this many digits) to construct an ID for a term being created."@en ;
obo:IAO_0000117 "Person:Alan Ruttenberg"@en ;
rdfs:label "has ID prefix"@en .
### http://purl.obolibrary.org/obo/IAO_0000600
obo:IAO_0000600 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "elucidation"@en ;
obo:IAO_0000117 "person:Alan Ruttenberg"@en ;
obo:IAO_0000119 "Person:Barry Smith"@en ;
obo:IAO_0000600 "Primitive terms in a highest-level ontology such as BFO are terms which are so basic to our understanding of reality that there is no way of defining them in a non-circular fashion. For these, therefore, we can provide only elucidations, supplemented by examples and by axioms"@en ;
rdfs:isDefinedBy obo:iao.owl ;
rdfs:label "elucidation"@en .
### http://purl.obolibrary.org/obo/IAO_0000601
obo:IAO_0000601 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "has associated axiom(nl)"@en ;
obo:IAO_0000117 "Person:Alan Ruttenberg"@en ;
obo:IAO_0000119 "Person:Alan Ruttenberg"@en ;
obo:IAO_0000600 "An axiom associated with a term expressed using natural language"@en ;
rdfs:isDefinedBy obo:iao.owl ;
rdfs:label "has associated axiom(nl)"@en .
### http://purl.obolibrary.org/obo/IAO_0000602
obo:IAO_0000602 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "has associated axiom(fol)"@en ;
obo:IAO_0000117 "Person:Alan Ruttenberg"@en ;
obo:IAO_0000119 "Person:Alan Ruttenberg"@en ;
obo:IAO_0000600 "An axiom expressed in first order logic using CLIF syntax"@en ;
rdfs:isDefinedBy obo:iao.owl ;
rdfs:label "has associated axiom(fol)"@en .
### http://purl.obolibrary.org/obo/IAO_0000603
obo:IAO_0000603 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "is allocated id range"@en ;
obo:IAO_0000115 "Relates an ontology IRI to an (inclusive) range of IRIs in an OBO name space. The range is give as, e.g. \"IAO_0020000-IAO_0020999\""@en ;
obo:IAO_0000117 "PERSON:Alan Ruttenberg"@en ;
rdfs:comment "Add as annotation triples in the granting ontology"@en ;
rdfs:label "is allocated id range"@en .
### http://purl.obolibrary.org/obo/IAO_0000700
obo:IAO_0000700 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "has ontology root term"@en ;
obo:IAO_0000115 "Ontology annotation property. Relates an ontology to a term that is a designated root term of the ontology. Display tools like OLS can use terms annotated with this property as the starting point for rendering the ontology class hierarchy. There can be more than one root."@en ;
obo:IAO_0000117 "Nicolas Matentzoglu"@en ;
rdfs:label "has ontology root term"@en .
### http://purl.obolibrary.org/obo/IAO_0006011
obo:IAO_0006011 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "may be identical to"@en ;
obo:IAO_0000115 "A annotation relationship between two terms in an ontology that may refer to the same (natural) type but where more evidence is required before terms are merged."@en ;
obo:IAO_0000117 "David Osumi-Sutherland"@en ;
obo:IAO_0000233 "#40"@en ;
obo:IAO_0000234 "VFB"@en ;
rdfs:comment "Edges asserting this should be annotated with to record evidence supporting the assertion and its provenance."@en ;
rdfs:label "may be identical to"@en .
### http://purl.obolibrary.org/obo/IAO_0006012
obo:IAO_0006012 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "scheduled for obsoletion on or after"@en ;
obo:IAO_0000115 "Used when the class or object is scheduled for obsoletion/deprecation on or after a particular date."@en ;
obo:IAO_0000117 "Chris Mungall, Jie Zheng"@en ;
obo:IAO_0000233 "https://github.com/geneontology/go-ontology/issues/15532"@en ,
"https://github.com/information-artifact-ontology/ontology-metadata/issues/32"@en ;
obo:IAO_0000234 "GO ontology"@en ;
rdfs:label "scheduled for obsoletion on or after"@en ;
rdfs:range xsd:dateTime .
### http://purl.obolibrary.org/obo/IAO_0010000
obo:IAO_0010000 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "has axiom id"@en ;
obo:IAO_0000117 "Person:Alan Ruttenberg"@en ;
obo:IAO_0000119 "Person:Alan Ruttenberg"@en ;
obo:IAO_0000600 "A URI that is intended to be unique label for an axiom used for tracking change to the ontology. For an axiom expressed in different languages, each expression is given the same URI"@en ;
rdfs:isDefinedBy obo:iao.owl ;
rdfs:label "has axiom label"@en .
### http://purl.obolibrary.org/obo/IAO_0100001
obo:IAO_0100001 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "term replaced by"@en ;
obo:IAO_0000114 obo:IAO_0000125 ;
obo:IAO_0000115 "Use on obsolete terms, relating the term to another term that can be used as a substitute"@en ;
obo:IAO_0000117 "Person:Alan Ruttenberg"@en ;
obo:IAO_0000119 "Person:Alan Ruttenberg"@en ;
rdfs:comment "Add as annotation triples in the granting ontology"@en ;
rdfs:label "term replaced by"@en .
### http://purl.obolibrary.org/obo/OMO_0001001
obo:OMO_0001001 rdf:type owl:AnnotationProperty ;
obo:IAO_0000115 "This is an annotation used on an object property to indicate a logical characterstic beyond what is possible in OWL." ;
obo:IAO_0000119 "OBO Operations call" ;
oboInOwl:created_by <http://orcid.org/0000-0001-5208-3432> ;
rdfs:label "logical characteristic of object property" .
### http://purl.obolibrary.org/obo/OMO_0002000
obo:OMO_0002000 rdf:type owl:AnnotationProperty ;
obo:IAO_0000112 """'part disjoint with' 'defined by construct' \"\"\"
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX : <http://example.org/
CONSTRUCT {
[
a owl:Restriction ;
owl:onProperty :part_of ;
owl:someValuesFrom ?a ;
owl:disjointWith [
a owl:Restriction ;
owl:onProperty :part_of ;
owl:someValuesFrom ?b
]
]
}
WHERE {
?a :part_disjoint_with ?b .
}""" ;
obo:IAO_0000115 "Links an annotation property to a SPARQL CONSTRUCT query which is meant to provide semantics for a shortcut relation." ;
obo:IAO_0000233 <https://github.com/ontodev/robot/issues/963> ;
dce:contributor <https://orcid.org/0000-0002-7356-1779> ,
<https://orcid.org/0000-0002-8688-6599> ;
rdfs:label "defined by construct" .
### http://purl.obolibrary.org/obo/OMO_0003000
obo:OMO_0003000 rdf:type owl:AnnotationProperty ;
obo:IAO_0000112 "CHEBI:26523 (reactive oxygen species) has an exact synonym (ROS), which is of type OMO:0003000 (abbreviation)" ;
obo:IAO_0000115 "A synonym type for describing abbreviations or initalisms" ;
obo:IAO_0000233 <https://github.com/information-artifact-ontology/ontology-metadata/issues/122> ;
dcterms:contributor <https://orcid.org/0000-0003-4423-4370> ;
dcterms:created "2023-03-03"^^xsd:date ;
rdfs:label "abbreviation" ;
rdfs:subPropertyOf oboInOwl:SynonymTypeProperty .
### http://purl.obolibrary.org/obo/OMO_0003001
obo:OMO_0003001 rdf:type owl:AnnotationProperty ;
obo:IAO_0000115 "A synonym type for describing ambiguous synonyms" ;
obo:IAO_0000233 <https://github.com/information-artifact-ontology/ontology-metadata/issues/122> ;
dcterms:contributor <https://orcid.org/0000-0003-4423-4370> ;
dcterms:created "2023-03-03"^^xsd:date ;
rdfs:label "ambiguous synonym" ;
rdfs:subPropertyOf oboInOwl:SynonymTypeProperty .
### http://purl.obolibrary.org/obo/OMO_0003002
obo:OMO_0003002 rdf:type owl:AnnotationProperty ;
obo:IAO_0000115 "A synonym type for describing dubious synonyms" ;
obo:IAO_0000233 <https://github.com/information-artifact-ontology/ontology-metadata/issues/122> ;
dcterms:contributor <https://orcid.org/0000-0003-4423-4370> ;
dcterms:created "2023-03-03"^^xsd:date ;
rdfs:label "dubious synonym" ;
rdfs:subPropertyOf oboInOwl:SynonymTypeProperty .
### http://purl.obolibrary.org/obo/OMO_0003003
obo:OMO_0003003 rdf:type owl:AnnotationProperty ;
obo:IAO_0000112 "EFO:0006346 (severe cutaneous adverse reaction) has an exact synonym (scar), which is of the type OMO:0003003 (layperson synonym)" ;
obo:IAO_0000115 "A synonym type for describing layperson or colloquial synonyms" ;
obo:IAO_0000233 <https://github.com/information-artifact-ontology/ontology-metadata/issues/122> ;
dcterms:contributor <https://orcid.org/0000-0003-4423-4370> ;
dcterms:created "2023-03-03"^^xsd:date ;
rdfs:label "layperson synonym" ;
rdfs:subPropertyOf oboInOwl:SynonymTypeProperty .
### http://purl.obolibrary.org/obo/OMO_0003004
obo:OMO_0003004 rdf:type owl:AnnotationProperty ;
obo:IAO_0000112 "CHEBI:23367 (molecular entity) has an exact synonym (molecular entities), which is of the type OMO:0003004 (plural form)" ;
obo:IAO_0000115 "A synonym type for describing pluralization synonyms" ;
obo:IAO_0000233 <https://github.com/information-artifact-ontology/ontology-metadata/issues/122> ;
dcterms:contributor <https://orcid.org/0000-0003-4423-4370> ;
dcterms:created "2023-03-03"^^xsd:date ;
rdfs:label "plural form" ;
rdfs:subPropertyOf oboInOwl:SynonymTypeProperty .
### http://purl.obolibrary.org/obo/OMO_0003005
obo:OMO_0003005 rdf:type owl:AnnotationProperty ;
obo:IAO_0000112 "CHEBI:16189 (sulfate) has an exact synonym (sulphate), which is of the type OMO:0003005 (UK spelling synonym)" ;
obo:IAO_0000115 "A synonym type for describing UK spelling variants" ;
obo:IAO_0000233 <https://github.com/information-artifact-ontology/ontology-metadata/issues/122> ;
dcterms:contributor <https://orcid.org/0000-0003-4423-4370> ;
dcterms:created "2023-03-03"^^xsd:date ;
rdfs:label "UK spelling synonym" ;
rdfs:subPropertyOf oboInOwl:SynonymTypeProperty .
### http://purl.obolibrary.org/obo/OMO_0003006
obo:OMO_0003006 rdf:type owl:AnnotationProperty ;
obo:IAO_0000115 "A synonym type for common misspellings" ;
obo:IAO_0000233 <https://github.com/information-artifact-ontology/ontology-metadata/issues/132> ;
dcterms:contributor <https://orcid.org/0000-0003-4423-4370> ;
dcterms:created "2023-03-03"^^xsd:date ;
rdfs:label "misspelling" ;
rdfs:subPropertyOf oboInOwl:SynonymTypeProperty .
### http://purl.obolibrary.org/obo/OMO_0003007
obo:OMO_0003007 rdf:type owl:AnnotationProperty ;
obo:IAO_0000115 "A synonym type for misnomers, i.e., a synonym that is not technically correct but is commonly used anyway" ;
obo:IAO_0000233 <https://github.com/information-artifact-ontology/ontology-metadata/issues/133> ;
dcterms:contributor <https://orcid.org/0000-0003-4423-4370> ;
dcterms:created "2023-03-03"^^xsd:date ;
rdfs:label "misnomer" ;
rdfs:subPropertyOf oboInOwl:SynonymTypeProperty .
### http://purl.obolibrary.org/obo/OMO_0003008
obo:OMO_0003008 rdf:type owl:AnnotationProperty ;
obo:IAO_0000112 "MAPT, the gene that encodes the Tau protein, has a previous name DDPAC. Note: in this case, the name type is more specifically the gene symbol." ;
obo:IAO_0000115 "A synonym type for names that have been used as primary labels in the past." ;
obo:IAO_0000233 <https://github.com/information-artifact-ontology/ontology-metadata/issues/139> ;
dcterms:contributor <https://orcid.org/0000-0003-4423-4370> ;
dcterms:created "2023-07-25"^^xsd:date ;
rdfs:label "previous name" ;
rdfs:subPropertyOf oboInOwl:SynonymTypeProperty .
### http://purl.obolibrary.org/obo/OMO_0003009
obo:OMO_0003009 rdf:type owl:AnnotationProperty ;
obo:IAO_0000112 "The legal name for Harvard University (https://ror.org/03vek6s52) is President and Fellows of Harvard College" ;
obo:IAO_0000115 "A synonym type for the legal entity name" ;
obo:IAO_0000233 <https://github.com/information-artifact-ontology/ontology-metadata/issues/141> ;
dcterms:contributor <https://orcid.org/0000-0003-4423-4370> ;
dcterms:created "2023-07-27"^^xsd:date ;
rdfs:label "legal name" ;
rdfs:subPropertyOf oboInOwl:SynonymTypeProperty .
### http://purl.obolibrary.org/obo/OMO_0003010
obo:OMO_0003010 rdf:type owl:AnnotationProperty ;
obo:IAO_0000112 "CHEBI:46195 has been assigned the english International Nonproproprietary Name (INN) \"paracetamol\". In some cases such as this one, the INN might be the same as the ontology's primary label" ;
obo:IAO_0000115 "The International Nonproprietary Name (INN) is a standardize name for a pharmaceutical drug or active ingredient issued by the World Health Organization (WHO) meant to address the issues with country- or language-specific brand names. These are issued in several languages, including English, Latin, French, Russian, Spanish, Arabic, and Chinese." ;
obo:IAO_0000233 <https://github.com/information-artifact-ontology/ontology-metadata/issues/149> ;
dcterms:contributor <https://orcid.org/0000-0003-4423-4370> ;
dcterms:created "2023-09-30"^^xsd:date ;
oboInOwl:hasExactSynonym "INN" ;
rdfs:label "International Nonproprietary Name" ;
rdfs:subPropertyOf oboInOwl:SynonymTypeProperty .
### http://purl.obolibrary.org/obo/OMO_0003011
obo:OMO_0003011 rdf:type owl:AnnotationProperty ;
obo:IAO_0000112 "nasopharynx (UBERON:0001728) has the latin name \"pars nasalis pharyngis" ;
obo:IAO_0000115 "A synonym type for describing Latin term synonyms." ;
obo:IAO_0000233 <https://github.com/information-artifact-ontology/ontology-metadata/issues/146> ;
dcterms:contributor <https://orcid.org/0000-0002-1773-2692> ;
dcterms:created "2023-10-12"^^xsd:date ;
rdfs:label "latin term" ;
rdfs:subPropertyOf oboInOwl:SynonymTypeProperty .
### http://purl.obolibrary.org/obo/OMO_0003012
obo:OMO_0003012 rdf:type owl:AnnotationProperty ;
obo:IAO_0000112 "NASA is an word acronym for the US National Aeronautics and Space Administration because the acronym is pronounced. FBI is an initialism (also known as alphabetism) for the US Federal Bureau of Investigation since the letters are pronounced one at a time. JPEG is an acronym for Joint Photographic Experts Group but does not count as a word acronym nor an initialism since it is mixed how it is pronounced." ;
obo:IAO_0000115 "A synonym type for describing abbreviations that are a part of the full name's words, such as initialisms or alphabetisms." ;
obo:IAO_0000233 <https://github.com/information-artifact-ontology/ontology-metadata/issues/135> ;
dcterms:contributor <https://orcid.org/0000-0003-4423-4370> ;
dcterms:created "2023-11-01"^^xsd:date ;
rdfs:label "acronym" ;
rdfs:subPropertyOf oboInOwl:SynonymTypeProperty .
### http://purl.obolibrary.org/obo/RO_0001900
obo:RO_0001900 rdf:type owl:AnnotationProperty .
### http://purl.obolibrary.org/obo/RO_0002259
obo:RO_0002259 rdf:type owl:AnnotationProperty ;
rdfs:subPropertyOf oboInOwl:SubsetProperty .
### http://purl.obolibrary.org/obo/RO_0002575
obo:RO_0002575 rdf:type owl:AnnotationProperty .
### http://purl.obolibrary.org/obo/RO_0002579
obo:RO_0002579 rdf:type owl:AnnotationProperty .
### http://purl.obolibrary.org/obo/RO_0002581
obo:RO_0002581 rdf:type owl:AnnotationProperty ;
obo:IAO_0000115 "If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL" ;
rdfs:label "is a defining property chain axiom" .
### http://purl.obolibrary.org/obo/RO_0002582
obo:RO_0002582 rdf:type owl:AnnotationProperty ;
obo:IAO_0000115 "If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R." ;
rdfs:label "is a defining property chain axiom where second argument is reflexive" .
### http://purl.obolibrary.org/obo/RO_0004049
obo:RO_0004049 rdf:type owl:AnnotationProperty .
### http://purl.obolibrary.org/obo/RO_0004050
obo:RO_0004050 rdf:type owl:AnnotationProperty .
### http://purl.obolibrary.org/obo/RO_0040042
obo:RO_0040042 rdf:type owl:AnnotationProperty .
### http://purl.obolibrary.org/obo/valid_for_go_annotation_extension
obo:valid_for_go_annotation_extension rdf:type owl:AnnotationProperty ;
rdfs:subPropertyOf oboInOwl:SubsetProperty .
### http://purl.obolibrary.org/obo/valid_for_go_gp2term
obo:valid_for_go_gp2term rdf:type owl:AnnotationProperty ;
rdfs:subPropertyOf oboInOwl:SubsetProperty .
### http://purl.obolibrary.org/obo/valid_for_go_ontology
obo:valid_for_go_ontology rdf:type owl:AnnotationProperty ;
rdfs:subPropertyOf oboInOwl:SubsetProperty .
### http://purl.obolibrary.org/obo/valid_for_gocam
obo:valid_for_gocam rdf:type owl:AnnotationProperty ;
rdfs:subPropertyOf oboInOwl:SubsetProperty .
### http://purl.obolibrary.org/obo/ro/subsets#ro-eco
subsets:ro-eco rdf:type owl:AnnotationProperty ;
rdfs:subPropertyOf oboInOwl:SubsetProperty .
### http://purl.org/dc/elements/1.1/contributor
dce:contributor rdf:type owl:AnnotationProperty .
### http://purl.org/dc/elements/1.1/coverage
dce:coverage rdf:type owl:AnnotationProperty .
### http://purl.org/dc/elements/1.1/creator
dce:creator rdf:type owl:AnnotationProperty .
### http://purl.org/dc/elements/1.1/date
dce:date rdf:type owl:AnnotationProperty .
### http://purl.org/dc/elements/1.1/description
dce:description rdf:type owl:AnnotationProperty .
### http://purl.org/dc/elements/1.1/format
dce:format rdf:type owl:AnnotationProperty .
### http://purl.org/dc/elements/1.1/identifier
dce:identifier rdf:type owl:AnnotationProperty .
### http://purl.org/dc/elements/1.1/language
dce:language rdf:type owl:AnnotationProperty .
### http://purl.org/dc/elements/1.1/member
dce:member rdf:type owl:AnnotationProperty .
### http://purl.org/dc/elements/1.1/publisher
dce:publisher rdf:type owl:AnnotationProperty .
### http://purl.org/dc/elements/1.1/relation
dce:relation rdf:type owl:AnnotationProperty .
### http://purl.org/dc/elements/1.1/rights
dce:rights rdf:type owl:AnnotationProperty .
### http://purl.org/dc/elements/1.1/source
dce:source rdf:type owl:AnnotationProperty .
### http://purl.org/dc/elements/1.1/subject
dce:subject rdf:type owl:AnnotationProperty .
### http://purl.org/dc/elements/1.1/title
dce:title rdf:type owl:AnnotationProperty .
### http://purl.org/dc/elements/1.1/type
dce:type rdf:type owl:AnnotationProperty .
### http://purl.org/dc/terms/contributor
dcterms:contributor rdf:type owl:AnnotationProperty .
### http://purl.org/dc/terms/created
dcterms:created rdf:type owl:AnnotationProperty .
### http://purl.org/dc/terms/creator
dcterms:creator rdf:type owl:AnnotationProperty .
### http://purl.org/dc/terms/description
dcterms:description rdf:type owl:AnnotationProperty ;
rdfs:label "description" .
### http://purl.org/dc/terms/license
dcterms:license rdf:type owl:AnnotationProperty ;
rdfs:label "license" .
### http://purl.org/dc/terms/source
dcterms:source rdf:type owl:AnnotationProperty .
### http://purl.org/dc/terms/title
dcterms:title rdf:type owl:AnnotationProperty ;
rdfs:label "title" .
### http://swrl.stanford.edu/ontologies/3.3/swrla.owl#isRuleEnabled
swrla:isRuleEnabled rdf:type owl:AnnotationProperty .
### http://www.geneontology.org/formats/oboInOwl#SubsetProperty
oboInOwl:SubsetProperty rdf:type owl:AnnotationProperty .
### http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty
oboInOwl:SynonymTypeProperty rdf:type owl:AnnotationProperty .
### http://www.geneontology.org/formats/oboInOwl#created_by
oboInOwl:created_by rdf:type owl:AnnotationProperty .
### http://www.geneontology.org/formats/oboInOwl#creation_date
oboInOwl:creation_date rdf:type owl:AnnotationProperty .
### http://www.geneontology.org/formats/oboInOwl#default-namespace
oboInOwl:default-namespace rdf:type owl:AnnotationProperty .
### http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym
oboInOwl:hasBroadSynonym rdf:type owl:AnnotationProperty ;
obo:IAO_0000115 "An alternative label for a class or property which has a more general meaning than the preferred name/primary label." ;
obo:IAO_0000117 <http://orcid.org/0000-0001-5208-3432> ;
obo:IAO_0000233 "https://github.com/information-artifact-ontology/ontology-metadata/issues/18" ;
rdfs:label "has broad synonym"@en ;
rdfs:seeAlso "https://github.com/information-artifact-ontology/ontology-metadata/issues/18" ;
rdfs:subPropertyOf obo:IAO_0000118 .
### http://www.geneontology.org/formats/oboInOwl#hasDbXref
oboInOwl:hasDbXref rdf:type owl:AnnotationProperty .
### http://www.geneontology.org/formats/oboInOwl#hasExactSynonym
oboInOwl:hasExactSynonym rdf:type owl:AnnotationProperty ;
obo:IAO_0000115 "An alternative label for a class or property which has the exact same meaning than the preferred name/primary label." ;
obo:IAO_0000117 <http://orcid.org/0000-0001-5208-3432> ;
obo:IAO_0000233 "https://github.com/information-artifact-ontology/ontology-metadata/issues/20" ;
rdfs:label "has exact synonym"@en ;
rdfs:seeAlso "https://github.com/information-artifact-ontology/ontology-metadata/issues/20" ;
rdfs:subPropertyOf obo:IAO_0000118 .
### http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym
oboInOwl:hasNarrowSynonym rdf:type owl:AnnotationProperty ;
obo:IAO_0000115 "An alternative label for a class or property which has a more specific meaning than the preferred name/primary label." ;
obo:IAO_0000117 <http://orcid.org/0000-0001-5208-3432> ;
obo:IAO_0000233 "https://github.com/information-artifact-ontology/ontology-metadata/issues/19" ;
rdfs:label "has narrow synonym"@en ;
rdfs:seeAlso "https://github.com/information-artifact-ontology/ontology-metadata/issues/19" ;
rdfs:subPropertyOf obo:IAO_0000118 .
### http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion
oboInOwl:hasOBOFormatVersion rdf:type owl:AnnotationProperty .
### http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym
oboInOwl:hasRelatedSynonym rdf:type owl:AnnotationProperty ;
obo:IAO_0000115 "An alternative label for a class or property that has been used synonymously with the primary term name, but the usage is not strictly correct." ;
obo:IAO_0000117 <http://orcid.org/0000-0001-5208-3432> ;
obo:IAO_0000233 "https://github.com/information-artifact-ontology/ontology-metadata/issues/21" ;
rdfs:label "has related synonym"@en ;
rdfs:seeAlso "https://github.com/information-artifact-ontology/ontology-metadata/issues/21" ;
rdfs:subPropertyOf obo:IAO_0000118 .
### http://www.geneontology.org/formats/oboInOwl#inSubset
oboInOwl:inSubset rdf:type owl:AnnotationProperty .
### http://www.geneontology.org/formats/oboInOwl#saved-by
oboInOwl:saved-by rdf:type owl:AnnotationProperty .
### http://www.w3.org/2000/01/rdf-schema#comment
rdfs:comment rdf:type owl:AnnotationProperty .
### http://www.w3.org/2000/01/rdf-schema#isDefinedBy
rdfs:isDefinedBy rdf:type owl:AnnotationProperty .
### http://www.w3.org/2000/01/rdf-schema#label
rdfs:label rdf:type owl:AnnotationProperty .
### http://www.w3.org/2000/01/rdf-schema#seeAlso
rdfs:seeAlso rdf:type owl:AnnotationProperty .
### http://www.w3.org/2004/02/skos/core#closeMatch
skos:closeMatch rdf:type owl:AnnotationProperty .
### http://xmlns.com/foaf/0.1/homepage
foaf:homepage rdf:type owl:AnnotationProperty .
### http://xmlns.com/foaf/0.1/mbox
foaf:mbox rdf:type owl:AnnotationProperty .
#################################################################
# Datatypes
#################################################################
### http://www.w3.org/2001/XMLSchema#date
xsd:date rdf:type rdfs:Datatype .
#################################################################
# Object Properties
#################################################################
### http://purl.obolibrary.org/obo/BFO_0000050
obo:BFO_0000050 rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf obo:RO_0002131 ;
owl:inverseOf obo:BFO_0000051 ;
rdf:type owl:TransitiveProperty ;
obo:IAO_0000111 "is part of"@en ;
obo:IAO_0000112 "my brain is part of my body (continuant parthood, two material entities)"@en ,
"my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)"@en ,
"this day is part of this year (occurrent parthood)"@en ;
obo:IAO_0000115 "a core relation that holds between a part and its whole"@en ;
obo:IAO_0000116 "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other."@en ,
"Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/"@en ,
"""Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)
A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'."""@en ;
obo:IAO_0000118 "part_of"@en ;
obo:RO_0001900 obo:RO_0001901 ;
obo:RO_0040042 obo:BFO_0000002 ,
obo:BFO_0000003 ,
obo:BFO_0000004 ,
obo:BFO_0000017 ,
obo:BFO_0000019 ,
obo:BFO_0000020 ,
obo:BFO_0000031 ;
oboInOwl:inSubset obo:valid_for_go_annotation_extension ,
obo:valid_for_go_gp2term ,
obo:valid_for_go_ontology ,
obo:valid_for_gocam ;
rdfs:label "part of"@en ;
rdfs:seeAlso <http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections> ,
<http://ontologydesignpatterns.org/wiki/Submissions:PartOf> ,
"http://www.obofoundry.org/ro/#OBO_REL:part_of" ,
"https://wiki.geneontology.org/Part_of"^^xsd:anyURI .
### http://purl.obolibrary.org/obo/BFO_0000051
obo:BFO_0000051 rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf obo:RO_0002131 ;
rdf:type owl:TransitiveProperty ;
obo:IAO_0000111 "has part"@en ;
obo:IAO_0000112 "my body has part my brain (continuant parthood, two material entities)"@en ,
"my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)"@en ,
"this year has part this day (occurrent parthood)"@en ;
obo:IAO_0000115 "a core relation that holds between a whole and its part"@en ;
obo:IAO_0000116 "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part."@en ,
"Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/"@en ,
"""Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)
A continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'."""@en ;
obo:IAO_0000118 "has_part"@en ;
obo:RO_0001900 obo:RO_0001901 ;
oboInOwl:inSubset obo:valid_for_go_annotation_extension ,
obo:valid_for_go_ontology ,
obo:valid_for_gocam ;
rdfs:label "has part"@en .
### http://purl.obolibrary.org/obo/BFO_0000055
obo:BFO_0000055 rdf:type owl:ObjectProperty .
### http://purl.obolibrary.org/obo/BFO_0000062
obo:BFO_0000062 rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf obo:RO_0002086 ;
owl:inverseOf obo:BFO_0000063 ;
rdf:type owl:TransitiveProperty ;
rdfs:domain obo:BFO_0000003 ;
rdfs:range obo:BFO_0000003 ;
owl:propertyChainAxiom ( obo:BFO_0000050
obo:BFO_0000062
) ;
obo:IAO_0000111 "preceded by"@en ;
obo:IAO_0000115 "x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point."@en ;
obo:IAO_0000116 "An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other."@en ;
obo:IAO_0000118 "is preceded by"@en ,
"preceded_by"@en ;
dcterms:source "http://www.obofoundry.org/ro/#OBO_REL:preceded_by" ;
oboInOwl:inSubset subsets:ro-eco ;
rdfs:label "preceded by"@en .
### http://purl.obolibrary.org/obo/BFO_0000063
obo:BFO_0000063 rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf obo:RO_0002222 ;
rdf:type owl:TransitiveProperty ;
rdfs:domain obo:BFO_0000003 ;
rdfs:range obo:BFO_0000003 ;
owl:propertyChainAxiom ( obo:BFO_0000050
obo:BFO_0000063
) ;
obo:IAO_0000111 "precedes"@en ;
obo:IAO_0000115 "x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point."@en ;
oboInOwl:inSubset subsets:ro-eco ;
rdfs:label "precedes"@en .
### http://purl.obolibrary.org/obo/IAO_0000136
obo:IAO_0000136 rdf:type owl:ObjectProperty ;
obo:IAO_0000112 "This document is about information artifacts and their representations"@en ;
obo:IAO_0000114 obo:IAO_0000125 ;
obo:IAO_0000115 "A (currently) primitive relation that relates an information artifact to an entity."@en ;
obo:IAO_0000116 """7/6/2009 Alan Ruttenberg. Following discussion with Jonathan Rees, and introduction of \"mentions\" relation. Weaken the is_about relationship to be primitive.
We will try to build it back up by elaborating the various subproperties that are more precisely defined.
Some currently missing phenomena that should be considered \"about\" are predications - \"The only person who knows the answer is sitting beside me\" , Allegory, Satire, and other literary forms that can be topical without explicitly mentioning the topic."""@en ;
obo:IAO_0000117 "person:Alan Ruttenberg"@en ;
obo:IAO_0000119 "Smith, Ceusters, Ruttenberg, 2000 years of philosophy"@en ;
rdfs:label "is about"@en .