From b70dceb0a0225312a34d982600903ac79aafd37e Mon Sep 17 00:00:00 2001
From: Vincent LaGrassa <vincent.lagrassa@northwestern.edu>
Date: Mon, 12 Jun 2023 13:41:43 -0500
Subject: [PATCH] Update Dockerfile COPY command(s)

---
 .dockerignore | 6 ++++++
 Dockerfile    | 9 ++-------
 2 files changed, 8 insertions(+), 7 deletions(-)
 create mode 100644 .dockerignore

diff --git a/.dockerignore b/.dockerignore
new file mode 100644
index 0000000..873f07a
--- /dev/null
+++ b/.dockerignore
@@ -0,0 +1,6 @@
+.github
+.vscode
+data
+env
+img
+input_data
diff --git a/Dockerfile b/Dockerfile
index 30bea79..bbaae46 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -26,15 +26,10 @@ WORKDIR /nemascan
 RUN NXF_VER=21.05.0-edge NXF_MODE=google NXF_EDGE=1 \
     wget -qO- https://get.nextflow.io | bash
 
-COPY nemascan-nxf.sh /nemascan/nemascan-nxf.sh
-COPY nextflow.config /nemascan/nextflow.config
-COPY main.nf /nemascan/main.nf
-COPY conf/* /nemascan/conf/
-COPY bin/* /nemascan/bin/
-COPY modules/* /nemascan/modules/
+
+COPY . .
 
 
 # add nextflow and nemarun directory to te system path and make them executable
 ENV PATH="/nemascan:${PATH}"
 RUN chmod +x /nemascan/nemascan-nxf.sh /nemascan/nextflow
-