SCANVISmerge issue

[Manonmania]

Hi,

SCANVIS is a very useful tool. I am using your SCANVIS tool to visualize splicing junctions and I am having issue with SCANVISvisual function. I am trying to visualize a region of interest and one of the samples has only one junction information. SCANVISvisual function throws me the following error message “Error in sj[[i]][, usjcc] : incorrect number of dimensions”. I have observed that there is a bug in the SCANVISmerge function, specifically in the following chunk of the code.

#adding rownames
for(i in seq(1,length(sj),1)){
tmp=sj[[i]][,usjcc]
h=which(tmp=='')
if(length(h)>0) tmp[h]='NA'
tmp=gsub(' ','',tmp)
rownames(sj[[i]])=apply(tmp,1,function(x) paste(x,collapse=' '))
}

Could you please fix this bug in the SCANVISmerge code?

Thanks,
Mano