diff --git a/src/mappings/fbbt.sssom.tsv b/src/mappings/fbbt.sssom.tsv index bae19960fa..7d8d3dbf97 100644 --- a/src/mappings/fbbt.sssom.tsv +++ b/src/mappings/fbbt.sssom.tsv @@ -10,7 +10,7 @@ #license: "https://creativecommons.org/licenses/by/4.0/" #subject_source: "obo:fbbt.owl" #object_source: "obo:uberon.owl" -#mapping_date: "2024-04-24" +#mapping_date: "2024-05-31" subject_id subject_label predicate_id object_id mapping_justification FBbt:00000001 organism semapv:crossSpeciesExactMatch UBERON:0000468 semapv:ManualMappingCuration FBbt:00000002 tagma semapv:crossSpeciesExactMatch UBERON:6000002 semapv:ManualMappingCuration @@ -193,7 +193,6 @@ FBbt:00004551 adult external thorax semapv:crossSpeciesExactMatch UBERON:6004551 FBbt:00004552 tergum semapv:crossSpeciesExactMatch UBERON:6004552 semapv:ManualMappingCuration FBbt:00004557 sternum semapv:crossSpeciesExactMatch UBERON:0003130 semapv:ManualMappingCuration FBbt:00004578 adult external mesothorax semapv:crossSpeciesExactMatch UBERON:6004578 semapv:ManualMappingCuration -FBbt:00004579 dorsal mesothorax semapv:crossSpeciesExactMatch UBERON:6004579 semapv:ManualMappingCuration FBbt:00004580 mesothoracic tergum semapv:crossSpeciesExactMatch UBERON:6004580 semapv:ManualMappingCuration FBbt:00004640 leg semapv:crossSpeciesExactMatch UBERON:0005895 semapv:ManualMappingCuration FBbt:00004642 tibia semapv:crossSpeciesExactMatch UBERON:0003131 semapv:ManualMappingCuration diff --git a/src/ontology/Makefile b/src/ontology/Makefile index c1359dc68c..8e91bfcb97 100644 --- a/src/ontology/Makefile +++ b/src/ontology/Makefile @@ -1,7 +1,7 @@ # ---------------------------------------- # Makefile for uberon # Generated using ontology-development-kit -# ODK Version: v1.5 +# ODK Version: v1.5.2 # ---------------------------------------- # IMPORTANT: DO NOT EDIT THIS FILE. To override default make goals, use uberon.Makefile instead @@ -47,7 +47,7 @@ REPORT_PROFILE_OPTS = --profile $(ROBOT_PROFILE) OBO_FORMAT_OPTIONS = SPARQL_VALIDATION_CHECKS = equivalent-classes owldef-self-reference illegal-annotation-property taxon-range orcid-contributor obsolete-replaced_by xrefs-mesh-pattern label-synonym-polysemy id-format SPARQL_EXPORTS = basic-report -ODK_VERSION_MAKEFILE = v1.5 +ODK_VERSION_MAKEFILE = v1.5.2 TODAY ?= $(shell date +%Y-%m-%d) OBODATE ?= $(shell date +'%d:%m:%Y %H:%M') diff --git a/src/ontology/bridge/cl-bridge-to-aeo.owl b/src/ontology/bridge/cl-bridge-to-aeo.owl index afe2646cf5..f12294957f 100644 --- a/src/ontology/bridge/cl-bridge-to-aeo.owl +++ b/src/ontology/bridge/cl-bridge-to-aeo.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + @@ -57,5 +57,5 @@ - + diff --git a/src/ontology/bridge/cl-bridge-to-caro.owl b/src/ontology/bridge/cl-bridge-to-caro.owl index c8b24bf8da..21f83e8059 100644 --- a/src/ontology/bridge/cl-bridge-to-caro.owl +++ b/src/ontology/bridge/cl-bridge-to-caro.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + @@ -57,5 +57,5 @@ - + diff --git a/src/ontology/bridge/cl-bridge-to-ehdaa2.owl b/src/ontology/bridge/cl-bridge-to-ehdaa2.owl index 29414f95d7..4a302cdb9b 100644 --- a/src/ontology/bridge/cl-bridge-to-ehdaa2.owl +++ b/src/ontology/bridge/cl-bridge-to-ehdaa2.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Jonathan Bard CL editors Equivalence axioms between EHDAA2 and CL. EHDAA2 replaces EHDAA. @@ -244,5 +244,5 @@ - + diff --git a/src/ontology/bridge/cl-bridge-to-emapa.owl b/src/ontology/bridge/cl-bridge-to-emapa.owl index a0f4d44568..14adfb877a 100644 --- a/src/ontology/bridge/cl-bridge-to-emapa.owl +++ b/src/ontology/bridge/cl-bridge-to-emapa.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Anne Niknejad Aurelie Comte CL editors @@ -359,5 +359,5 @@ - + diff --git a/src/ontology/bridge/cl-bridge-to-fbbt.owl b/src/ontology/bridge/cl-bridge-to-fbbt.owl index b9c75e8651..f62120357d 100644 --- a/src/ontology/bridge/cl-bridge-to-fbbt.owl +++ b/src/ontology/bridge/cl-bridge-to-fbbt.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + David Osumi-Sutherland CL editors Taxonomic equivalence axioms between the Drosophila Anatomy Ontology and CL. @@ -2163,5 +2163,5 @@ - + diff --git a/src/ontology/bridge/cl-bridge-to-fma.owl b/src/ontology/bridge/cl-bridge-to-fma.owl index c13734a304..dedc3840e7 100644 --- a/src/ontology/bridge/cl-bridge-to-fma.owl +++ b/src/ontology/bridge/cl-bridge-to-fma.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Onard Mejino Terry Hayamizu CL editors @@ -9690,7 +9690,7 @@ - myoepithelial cell of mammary gland (post-embryonic human) + basal-myoepithelial cell of mammary gland (post-embryonic human) @@ -17030,5 +17030,5 @@ - + diff --git a/src/ontology/bridge/cl-bridge-to-go.owl b/src/ontology/bridge/cl-bridge-to-go.owl index 266a089b1b..ab940cb6ad 100644 --- a/src/ontology/bridge/cl-bridge-to-go.owl +++ b/src/ontology/bridge/cl-bridge-to-go.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + @@ -58,5 +58,5 @@ - + diff --git a/src/ontology/bridge/cl-bridge-to-kupo.owl b/src/ontology/bridge/cl-bridge-to-kupo.owl index 1501a3ca03..01360dedcd 100644 --- a/src/ontology/bridge/cl-bridge-to-kupo.owl +++ b/src/ontology/bridge/cl-bridge-to-kupo.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + @@ -3140,5 +3140,5 @@ - + diff --git a/src/ontology/bridge/cl-bridge-to-ma.owl b/src/ontology/bridge/cl-bridge-to-ma.owl index 6145b04c43..085ed45b7d 100644 --- a/src/ontology/bridge/cl-bridge-to-ma.owl +++ b/src/ontology/bridge/cl-bridge-to-ma.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + George Gkoutos CL editors Terry Hayamizu @@ -170,5 +170,5 @@ - + diff --git a/src/ontology/bridge/cl-bridge-to-ncit.owl b/src/ontology/bridge/cl-bridge-to-ncit.owl index e599062215..9ae96cde4f 100644 --- a/src/ontology/bridge/cl-bridge-to-ncit.owl +++ b/src/ontology/bridge/cl-bridge-to-ncit.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + @@ -132,5 +132,5 @@ - + diff --git a/src/ontology/bridge/cl-bridge-to-sctid.owl b/src/ontology/bridge/cl-bridge-to-sctid.owl index 4c8a2485c3..df4a10a5e6 100644 --- a/src/ontology/bridge/cl-bridge-to-sctid.owl +++ b/src/ontology/bridge/cl-bridge-to-sctid.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + OBOL CL editors Rough subclass axioms between SNOMED-CT and CL. Note that SNOMED is not open, unlike other ontologies used in bridges here. Consequently, the mappings here are not verified to the same degree. @@ -86,5 +86,5 @@ - + diff --git a/src/ontology/bridge/cl-bridge-to-wbbt.owl b/src/ontology/bridge/cl-bridge-to-wbbt.owl index a10b58577d..8a6b211447 100644 --- a/src/ontology/bridge/cl-bridge-to-wbbt.owl +++ b/src/ontology/bridge/cl-bridge-to-wbbt.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + @@ -665,5 +665,5 @@ - + diff --git a/src/ontology/bridge/cl-bridge-to-xao.owl b/src/ontology/bridge/cl-bridge-to-xao.owl index 330d7d088c..80c4ff9257 100644 --- a/src/ontology/bridge/cl-bridge-to-xao.owl +++ b/src/ontology/bridge/cl-bridge-to-xao.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Erik Segerdell VG Ponferrada CL editors @@ -195,5 +195,5 @@ - + diff --git a/src/ontology/bridge/cl-bridge-to-zfa.owl b/src/ontology/bridge/cl-bridge-to-zfa.owl index 530e3218f1..6caf97b8f6 100644 --- a/src/ontology/bridge/cl-bridge-to-zfa.owl +++ b/src/ontology/bridge/cl-bridge-to-zfa.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Melissa Haendel Veri Van Slyke Yvonne Bradford @@ -10721,5 +10721,5 @@ - + diff --git a/src/ontology/bridge/uberon-bridge-to-aeo.owl b/src/ontology/bridge/uberon-bridge-to-aeo.owl index 5308a8058b..757a0f91b6 100644 --- a/src/ontology/bridge/uberon-bridge-to-aeo.owl +++ b/src/ontology/bridge/uberon-bridge-to-aeo.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + @@ -2121,5 +2121,5 @@ - + diff --git a/src/ontology/bridge/uberon-bridge-to-bfo.owl b/src/ontology/bridge/uberon-bridge-to-bfo.owl index 6c50b41d47..7938cbdbac 100644 --- a/src/ontology/bridge/uberon-bridge-to-bfo.owl +++ b/src/ontology/bridge/uberon-bridge-to-bfo.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + @@ -74,5 +74,5 @@ - + diff --git a/src/ontology/bridge/uberon-bridge-to-caro.owl b/src/ontology/bridge/uberon-bridge-to-caro.owl index 0d11552ba6..75cd784ac4 100644 --- a/src/ontology/bridge/uberon-bridge-to-caro.owl +++ b/src/ontology/bridge/uberon-bridge-to-caro.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + @@ -822,5 +822,5 @@ - + diff --git a/src/ontology/bridge/uberon-bridge-to-dhba.owl b/src/ontology/bridge/uberon-bridge-to-dhba.owl index eaf73a6b59..ea555ddb5d 100644 --- a/src/ontology/bridge/uberon-bridge-to-dhba.owl +++ b/src/ontology/bridge/uberon-bridge-to-dhba.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + @@ -18906,5 +18906,5 @@ - + diff --git a/src/ontology/bridge/uberon-bridge-to-ehdaa2.owl b/src/ontology/bridge/uberon-bridge-to-ehdaa2.owl index 793dbc3cec..d6af84f89a 100644 --- a/src/ontology/bridge/uberon-bridge-to-ehdaa2.owl +++ b/src/ontology/bridge/uberon-bridge-to-ehdaa2.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Jonathan Bard Uberon editors Equivalence axioms between EHDAA2 and Uberon. EHDAA2 replaces EHDAA. @@ -6434,7 +6434,7 @@ - posterior vena cava (embryonic human) + inferior vena cava (embryonic human) @@ -36466,5 +36466,5 @@ - + diff --git a/src/ontology/bridge/uberon-bridge-to-emapa.owl b/src/ontology/bridge/uberon-bridge-to-emapa.owl index 3003fe6d1d..386d5d8f63 100644 --- a/src/ontology/bridge/uberon-bridge-to-emapa.owl +++ b/src/ontology/bridge/uberon-bridge-to-emapa.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Anne Niknejad Aurelie Comte Uberon editors @@ -24075,7 +24075,7 @@ - posterior vena cava (embryonic mouse) + inferior vena cava (embryonic mouse) @@ -107875,5 +107875,5 @@ - + diff --git a/src/ontology/bridge/uberon-bridge-to-fbbt.owl b/src/ontology/bridge/uberon-bridge-to-fbbt.owl index 0d438946b7..685a928587 100644 --- a/src/ontology/bridge/uberon-bridge-to-fbbt.owl +++ b/src/ontology/bridge/uberon-bridge-to-fbbt.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + David Osumi-Sutherland Uberon editors Taxonomic equivalence axioms between the Drosophila Anatomy Ontology and Uberon. @@ -3532,25 +3532,6 @@ - - - - - - - - - - - - - - - insect dorsal mesothorax (drosophila) - - - - @@ -8517,12 +8498,6 @@ - - - - - - @@ -8976,5 +8951,5 @@ - + diff --git a/src/ontology/bridge/uberon-bridge-to-fbdv.owl b/src/ontology/bridge/uberon-bridge-to-fbdv.owl index 4bc931915b..dc445ca5f4 100644 --- a/src/ontology/bridge/uberon-bridge-to-fbdv.owl +++ b/src/ontology/bridge/uberon-bridge-to-fbdv.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + @@ -315,5 +315,5 @@ - + diff --git a/src/ontology/bridge/uberon-bridge-to-fma.owl b/src/ontology/bridge/uberon-bridge-to-fma.owl index 8cd2980630..155a032de2 100644 --- a/src/ontology/bridge/uberon-bridge-to-fma.owl +++ b/src/ontology/bridge/uberon-bridge-to-fma.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Onard Mejino Terry Hayamizu Uberon editors @@ -36690,7 +36690,7 @@ - posterior vena cava (post-embryonic human) + inferior vena cava (post-embryonic human) @@ -150646,5 +150646,5 @@ - + diff --git a/src/ontology/bridge/uberon-bridge-to-go.owl b/src/ontology/bridge/uberon-bridge-to-go.owl index e50dc0399e..09ebdd28d1 100644 --- a/src/ontology/bridge/uberon-bridge-to-go.owl +++ b/src/ontology/bridge/uberon-bridge-to-go.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + @@ -72,5 +72,5 @@ - + diff --git a/src/ontology/bridge/uberon-bridge-to-hao.owl b/src/ontology/bridge/uberon-bridge-to-hao.owl index 6fdd0ca793..5adb5b8ed7 100644 --- a/src/ontology/bridge/uberon-bridge-to-hao.owl +++ b/src/ontology/bridge/uberon-bridge-to-hao.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + @@ -1966,5 +1966,5 @@ - + diff --git a/src/ontology/bridge/uberon-bridge-to-hba.owl b/src/ontology/bridge/uberon-bridge-to-hba.owl index f484a0b487..548763f1c2 100644 --- a/src/ontology/bridge/uberon-bridge-to-hba.owl +++ b/src/ontology/bridge/uberon-bridge-to-hba.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + @@ -172,12 +172,6 @@ - - - - - - @@ -196,18 +190,6 @@ - - - - - - - - - - - - @@ -244,18 +226,6 @@ - - - - - - - - - - - - @@ -604,12 +574,6 @@ - - - - - - @@ -2440,6 +2404,18 @@ + + + + + + + + + + + + @@ -2620,6 +2596,12 @@ + + + + + + @@ -2746,6 +2728,12 @@ + + + + + + @@ -2908,6 +2896,12 @@ + + + + + + @@ -3082,6 +3076,12 @@ + + + + + + @@ -11421,7 +11421,7 @@ - + @@ -11429,7 +11429,7 @@ - cranial nerve (human) + root of cranial nerve (human) @@ -11611,7 +11611,7 @@ - + @@ -11619,7 +11619,7 @@ - trigeminal nerve (human) + trigeminal nerve root (human) @@ -11687,7 +11687,7 @@ - + @@ -11695,7 +11695,7 @@ - glossopharyngeal nerve (human) + glossopharyngeal nerve root (human) @@ -11706,7 +11706,7 @@ - + @@ -11714,7 +11714,7 @@ - vagus nerve (human) + root of vagus nerve (human) @@ -11725,7 +11725,7 @@ - + @@ -11733,7 +11733,7 @@ - accessory XI nerve (human) + accessory nerve root (human) @@ -11744,7 +11744,7 @@ - + @@ -11752,7 +11752,7 @@ - hypoglossal nerve (human) + hypoglossal nerve root (human) @@ -14266,5 +14266,5 @@ - + diff --git a/src/ontology/bridge/uberon-bridge-to-hsapdv.owl b/src/ontology/bridge/uberon-bridge-to-hsapdv.owl index 13fc67832d..ca02ce29d7 100644 --- a/src/ontology/bridge/uberon-bridge-to-hsapdv.owl +++ b/src/ontology/bridge/uberon-bridge-to-hsapdv.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + @@ -290,5 +290,5 @@ - + diff --git a/src/ontology/bridge/uberon-bridge-to-kupo.owl b/src/ontology/bridge/uberon-bridge-to-kupo.owl index 62706db8ce..3610f00ca6 100644 --- a/src/ontology/bridge/uberon-bridge-to-kupo.owl +++ b/src/ontology/bridge/uberon-bridge-to-kupo.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + @@ -290,5 +290,5 @@ - + diff --git a/src/ontology/bridge/uberon-bridge-to-ma.owl b/src/ontology/bridge/uberon-bridge-to-ma.owl index fa3f60bbd6..3627186634 100644 --- a/src/ontology/bridge/uberon-bridge-to-ma.owl +++ b/src/ontology/bridge/uberon-bridge-to-ma.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + George Gkoutos Terry Hayamizu Uberon editors @@ -9019,7 +9019,7 @@ - posterior vena cava (post-embryonic mouse) + inferior vena cava (post-embryonic mouse) @@ -76608,5 +76608,5 @@ - + diff --git a/src/ontology/bridge/uberon-bridge-to-mba.owl b/src/ontology/bridge/uberon-bridge-to-mba.owl index fd8f0a5a42..609e3a65bb 100644 --- a/src/ontology/bridge/uberon-bridge-to-mba.owl +++ b/src/ontology/bridge/uberon-bridge-to-mba.owl @@ -32937,5 +32937,5 @@ - + diff --git a/src/ontology/bridge/uberon-bridge-to-mmusdv.owl b/src/ontology/bridge/uberon-bridge-to-mmusdv.owl index 466e4a2347..51eb74c7f1 100644 --- a/src/ontology/bridge/uberon-bridge-to-mmusdv.owl +++ b/src/ontology/bridge/uberon-bridge-to-mmusdv.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + @@ -365,5 +365,5 @@ - + diff --git a/src/ontology/bridge/uberon-bridge-to-ncit.owl b/src/ontology/bridge/uberon-bridge-to-ncit.owl index 01c787a7fe..6fe8a92a50 100644 --- a/src/ontology/bridge/uberon-bridge-to-ncit.owl +++ b/src/ontology/bridge/uberon-bridge-to-ncit.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + @@ -3978,7 +3978,7 @@ - posterior vena cava (NCIT) + inferior vena cava (NCIT) @@ -38466,5 +38466,5 @@ - + diff --git a/src/ontology/bridge/uberon-bridge-to-oges.owl b/src/ontology/bridge/uberon-bridge-to-oges.owl index 2b8f86a6f4..3413809f8f 100644 --- a/src/ontology/bridge/uberon-bridge-to-oges.owl +++ b/src/ontology/bridge/uberon-bridge-to-oges.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + @@ -318,5 +318,5 @@ - + diff --git a/src/ontology/bridge/uberon-bridge-to-pba.owl b/src/ontology/bridge/uberon-bridge-to-pba.owl index d78efc3ed3..df18c813f1 100644 --- a/src/ontology/bridge/uberon-bridge-to-pba.owl +++ b/src/ontology/bridge/uberon-bridge-to-pba.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + @@ -2409,5 +2409,5 @@ - + diff --git a/src/ontology/bridge/uberon-bridge-to-sctid.owl b/src/ontology/bridge/uberon-bridge-to-sctid.owl index c4a84517fb..9101dc5979 100644 --- a/src/ontology/bridge/uberon-bridge-to-sctid.owl +++ b/src/ontology/bridge/uberon-bridge-to-sctid.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + OBOL Uberon editors Rough subclass axioms between SNOMED-CT and Uberon. Note that SNOMED is not open, unlike other ontologies used in bridges here. Consequently, the mappings here are not verified to the same degree. @@ -3647,7 +3647,7 @@ - posterior vena cava (SCTID) + inferior vena cava (SCTID) @@ -61382,5 +61382,5 @@ - + diff --git a/src/ontology/bridge/uberon-bridge-to-spd.owl b/src/ontology/bridge/uberon-bridge-to-spd.owl index 45715c2fc9..5112a05cc5 100644 --- a/src/ontology/bridge/uberon-bridge-to-spd.owl +++ b/src/ontology/bridge/uberon-bridge-to-spd.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + @@ -315,5 +315,5 @@ - + diff --git a/src/ontology/bridge/uberon-bridge-to-tads.owl b/src/ontology/bridge/uberon-bridge-to-tads.owl index df19dd98e1..21496f6f5c 100644 --- a/src/ontology/bridge/uberon-bridge-to-tads.owl +++ b/src/ontology/bridge/uberon-bridge-to-tads.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + @@ -690,5 +690,5 @@ - + diff --git a/src/ontology/bridge/uberon-bridge-to-tgma.owl b/src/ontology/bridge/uberon-bridge-to-tgma.owl index dc01f1ce18..ef88d0d519 100644 --- a/src/ontology/bridge/uberon-bridge-to-tgma.owl +++ b/src/ontology/bridge/uberon-bridge-to-tgma.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + @@ -1397,5 +1397,5 @@ - + diff --git a/src/ontology/bridge/uberon-bridge-to-wbbt.owl b/src/ontology/bridge/uberon-bridge-to-wbbt.owl index 9f5b816520..1beb7279ea 100644 --- a/src/ontology/bridge/uberon-bridge-to-wbbt.owl +++ b/src/ontology/bridge/uberon-bridge-to-wbbt.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + @@ -1291,5 +1291,5 @@ - + diff --git a/src/ontology/bridge/uberon-bridge-to-wbls.owl b/src/ontology/bridge/uberon-bridge-to-wbls.owl index 67052b494b..9fe37f118a 100644 --- a/src/ontology/bridge/uberon-bridge-to-wbls.owl +++ b/src/ontology/bridge/uberon-bridge-to-wbls.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + @@ -316,5 +316,5 @@ - + diff --git a/src/ontology/bridge/uberon-bridge-to-xao.owl b/src/ontology/bridge/uberon-bridge-to-xao.owl index 7c4bf2ccca..09eba6289b 100644 --- a/src/ontology/bridge/uberon-bridge-to-xao.owl +++ b/src/ontology/bridge/uberon-bridge-to-xao.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Erik Segerdell VG Ponferrada Uberon editors @@ -8511,7 +8511,7 @@ - posterior vena cava (xenopus) + inferior vena cava (xenopus) @@ -15060,5 +15060,5 @@ - + diff --git a/src/ontology/bridge/uberon-bridge-to-zfa.owl b/src/ontology/bridge/uberon-bridge-to-zfa.owl index 713652553d..13c317771b 100644 --- a/src/ontology/bridge/uberon-bridge-to-zfa.owl +++ b/src/ontology/bridge/uberon-bridge-to-zfa.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Melissa Haendel Veri Van Slyke Yvonne Bradford @@ -51648,5 +51648,5 @@ - + diff --git a/src/ontology/bridge/uberon-bridge-to-zfs.owl b/src/ontology/bridge/uberon-bridge-to-zfs.owl index 9f3635a79c..a9f91d1a9d 100644 --- a/src/ontology/bridge/uberon-bridge-to-zfs.owl +++ b/src/ontology/bridge/uberon-bridge-to-zfs.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + @@ -384,5 +384,5 @@ - + diff --git a/src/ontology/components/hra_depiction_3d_images.owl b/src/ontology/components/hra_depiction_3d_images.owl index 7e96ecc315..be837497b9 100644 --- a/src/ontology/components/hra_depiction_3d_images.owl +++ b/src/ontology/components/hra_depiction_3d_images.owl @@ -37,1182 +37,2133 @@ --> - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Uterus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.0/assets/VH_F_Uterus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.1/assets/VH_F_Uterus.glb + + + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-left/v1.0/assets/NIH_F_Lymph_Node_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-right/v1.0/assets/NIH_F_Lymph_Node_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.0/SBU_F_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Placenta.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/placenta-full-term-female/v1.0/assets/VH_F_Placenta.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.2/assets/VH_F_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.2/assets/VH_F_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.0/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.0/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb + + + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Uterus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.0/assets/VH_F_Uterus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.1/assets/VH_F_Uterus.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.0/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pancreas.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pancreas.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.0/assets/VH_F_Pancreas.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.1/assets/VH_F_Pancreas.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.2/assets/3d-vh-f-pancreas.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.0/assets/VH_M_Pancreas.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.1/assets/VH_M_Pancreas.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.2/assets/3d-vh-m-pancreas.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb + + + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + 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https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Placenta.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/placenta-full-term-female/v1.0/assets/VH_F_Placenta.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-left/v1.0/assets/NIH_F_Lymph_Node_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-right/v1.0/assets/NIH_F_Lymph_Node_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.2/assets/NIH_F_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.2/assets/NIH_M_Lymph_Node.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.2/assets/VH_F_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.2/assets/VH_F_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.0/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb + + + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Placenta.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/placenta-full-term-female/v1.0/assets/VH_F_Placenta.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Skin.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_M_Skin.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Skin.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-skin.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/skin-female/v1.0/assets/VH_F_Skin.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/skin-female/v1.1/assets/VH_F_Skin.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/skin-female/v1.2/assets/VH_F_Skin.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/skin-female/v1.3/assets/3d-vh-f-skin.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/skin-male/v1.0/assets/VH_M_Skin.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/skin-male/v1.1/assets/VH_M_Skin.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/skin-male/v1.2/assets/VH_M_Skin.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Spleen.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spleen.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spleen.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-female/v1.0/assets/VH_F_Spleen.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-female/v1.1/assets/VH_F_Spleen.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-female/v1.2/assets/VH_F_Spleen.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-male/v1.0/assets/VH_M_Spleen.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-male/v1.1/assets/VH_M_Spleen.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-male/v1.2/assets/VH_M_Spleen.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Small_Intestine.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Small_Intestine.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-female/v1.1/assets/VH_F_Small_Intestine.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.0/assets/VH_M_Small_Intestine.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.1/assets/VH_M_Small_Intestine.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Small_Intestine.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Small_Intestine.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-female/v1.1/assets/VH_F_Small_Intestine.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.0/assets/VH_M_Small_Intestine.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.1/assets/VH_M_Small_Intestine.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Small_Intestine.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Small_Intestine.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-female/v1.1/assets/VH_F_Small_Intestine.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.0/assets/VH_M_Small_Intestine.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.1/assets/VH_M_Small_Intestine.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Small_Intestine.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Small_Intestine.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-female/v1.1/assets/VH_F_Small_Intestine.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.0/assets/VH_M_Small_Intestine.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.1/assets/VH_M_Small_Intestine.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + 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https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb + 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https://cdn.humanatlas.io/digital-objects/ref-organ/main-bronchus-female/v1.0/assets/3d-vh-f-main-bronchus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/main-bronchus-male/v1.0/assets/3d-vh-m-main-bronchus.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-main-bronchus.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-main-bronchus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/main-bronchus-female/v1.0/assets/3d-vh-f-main-bronchus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/main-bronchus-male/v1.0/assets/3d-vh-m-main-bronchus.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb + 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https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-left/v1.0/assets/NIH_F_Lymph_Node_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-right/v1.0/assets/NIH_F_Lymph_Node_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.2/assets/NIH_F_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.2/assets/NIH_M_Lymph_Node.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.0/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.0/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.0/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.0/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Placenta.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/placenta-full-term-female/v1.0/assets/VH_F_Placenta.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Thymus.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Thymus.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Thymus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.0/assets/VH_F_Thymus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.1/assets/VH_F_Thymus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.2/assets/VH_F_Thymus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.0/assets/VH_M_Thymus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.1/assets/VH_M_Thymus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.2/assets/VH_M_Thymus.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-larynx.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-larynx.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.0/assets/3d-vh-f-larynx.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.0/assets/3d-vh-m-larynx.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.0/assets/VH_F_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.1/assets/VH_F_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.2/assets/VH_F_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.0/assets/VH_M_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.1/assets/VH_M_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.2/assets/VH_M_Pelvis.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.2/assets/NIH_F_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.2/assets/NIH_M_Lymph_Node.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb - 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https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-trachea.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-trachea.glb + 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https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + 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https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.0/assets/VH_F_Uterus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.1/assets/VH_F_Uterus.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-l.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-l.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.0/assets/VH_F_Eye_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.1/assets/VH_F_Eye_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.2/assets/3d-vh-f-eye-l.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.0/assets/VH_M_Eye_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.1/assets/VH_M_Eye_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.2/assets/3d-vh-m-eye-l.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-r.glb - 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https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.2/assets/NIH_M_Lymph_Node.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-left/v1.0/assets/NIH_F_Lymph_Node_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-right/v1.0/assets/NIH_F_Lymph_Node_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb + 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https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.2/assets/NIH_F_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.2/assets/NIH_M_Lymph_Node.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-l.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-r.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-l.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-r.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.0/assets/VH_F_Eye_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.1/assets/VH_F_Eye_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.2/assets/3d-vh-f-eye-l.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.0/assets/VH_F_Eye_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.1/assets/VH_F_Eye_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.2/assets/3d-vh-f-eye-r.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.0/assets/VH_M_Eye_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.1/assets/VH_M_Eye_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.2/assets/3d-vh-m-eye-l.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.0/assets/VH_M_Eye_R.glb + 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https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-right/v1.0/assets/3d-vh-f-mammary-gland-r.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Small_Intestine.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Small_Intestine.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-female/v1.1/assets/VH_F_Small_Intestine.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.0/assets/VH_M_Small_Intestine.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.1/assets/VH_M_Small_Intestine.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Uterus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.0/assets/VH_F_Uterus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.1/assets/VH_F_Uterus.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Uterus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.0/assets/VH_F_Uterus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.1/assets/VH_F_Uterus.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-l.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-left/v1.0/assets/3d-vh-f-mammary-gland-l.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-r.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-right/v1.0/assets/3d-vh-f-mammary-gland-r.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb + + + https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-left/v1.0/assets/3d-vh-f-mammary-gland-l.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-right/v1.0/assets/3d-vh-f-mammary-gland-r.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-l.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-r.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-left/v1.0/assets/3d-vh-f-mammary-gland-l.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-right/v1.0/assets/3d-vh-f-mammary-gland-r.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - 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https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb - - - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Knee_L.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Knee_R.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Knee_L.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Knee_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb - + diff --git a/src/ontology/components/in-subset.owl b/src/ontology/components/in-subset.owl index a9cb19ce4a..69be4fdad9 100644 --- a/src/ontology/components/in-subset.owl +++ b/src/ontology/components/in-subset.owl @@ -11,5 +11,5 @@ - + diff --git a/src/ontology/components/mappings.owl b/src/ontology/components/mappings.owl index 68e18caecc..15c4ef7d65 100644 --- a/src/ontology/components/mappings.owl +++ b/src/ontology/components/mappings.owl @@ -5251,15 +5251,6 @@ FBbt:00004578 - - FBbt:00004579 - - - - - FBbt:00004579 - - FBbt:00004580 @@ -5936,5 +5927,5 @@ - + diff --git a/src/ontology/components/vasculature_class.owl b/src/ontology/components/vasculature_class.owl index 416eb2e5b4..ed7dd1771e 100644 --- a/src/ontology/components/vasculature_class.owl +++ b/src/ontology/components/vasculature_class.owl @@ -2321,5 +2321,5 @@ - + diff --git a/src/ontology/diffs/uberon-diff.md b/src/ontology/diffs/uberon-diff.md index 684b7f09ef..e3d8c0d9e4 100644 --- a/src/ontology/diffs/uberon-diff.md +++ b/src/ontology/diffs/uberon-diff.md @@ -2,1043 +2,13782 @@ ## Left - Ontology IRI: `http://purl.obolibrary.org/obo/uberon/uberon-base.owl` -- Version IRI: `http://purl.obolibrary.org/obo/uberon/releases/2024-03-22/uberon-base.owl` -- Loaded from: `file:/Users/anitac/Documents/GitHub/uberon/src/ontology/diffs/uberon-lastbuild.owl` +- Version IRI: `http://purl.obolibrary.org/obo/uberon/releases/2024-05-13/uberon-base.owl` +- Loaded from: `file:/work/src/ontology/diffs/uberon-lastbuild.owl` + +## Right +- Ontology IRI: `http://purl.obolibrary.org/obo/uberon/uberon-base.owl` +- Version IRI: `http://purl.obolibrary.org/obo/uberon/releases/2024-06-14/uberon-base.owl` +- Loaded from: `file:/work/src/ontology/diffs/../../../uberon-base.owl` + +### Ontology imports + + + +### Ontology annotations +#### Removed +- [versionInfo](http://www.w3.org/2002/07/owl#versionInfo) "2024-05-13" + +#### Added +- [versionInfo](http://www.w3.org/2002/07/owl#versionInfo) "2024-06-14" + + +### A historic synonym, no longer encouraged `http://purl.obolibrary.org/obo/uberon/core#DEPRECATED` + +#### Added +- [A historic synonym, no longer encouraged](http://purl.obolibrary.org/obo/uberon/core#DEPRECATED) SubPropertyOf: [SynonymTypeProperty](http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty) + + +### C1 segment of cervical spinal cord `http://purl.obolibrary.org/obo/UBERON_0006469` +#### Removed +- [C1 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006469) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [C1 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006469) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [C1 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006469) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [C1 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006469) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### C2 segment of cervical spinal cord `http://purl.obolibrary.org/obo/UBERON_0006489` +#### Removed +- [C2 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006489) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [C2 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006489) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [C2 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006489) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [C2 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006489) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### C3 segment of cervical spinal cord `http://purl.obolibrary.org/obo/UBERON_0006488` +#### Removed +- [C3 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006488) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [C3 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006488) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [C3 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006488) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [C3 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006488) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### C4 segment of cervical spinal cord `http://purl.obolibrary.org/obo/UBERON_0006490` +#### Removed +- [C4 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006490) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [C4 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006490) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [C4 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006490) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [C4 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006490) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### C5 segment of cervical spinal cord `http://purl.obolibrary.org/obo/UBERON_0006491` +#### Removed +- [C5 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006491) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [C5 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006491) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [C5 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006491) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [C5 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006491) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### C6 segment of cervical spinal cord `http://purl.obolibrary.org/obo/UBERON_0006492` +#### Removed +- [C6 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006492) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [C6 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006492) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [C6 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006492) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [C6 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006492) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### C7 segment of cervical spinal cord `http://purl.obolibrary.org/obo/UBERON_0006493` +#### Removed +- [C7 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006493) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [C7 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006493) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [C7 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006493) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [C7 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006493) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### C8 segment of cervical spinal cord `http://purl.obolibrary.org/obo/UBERON_0006470` +#### Removed +- [C8 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006470) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [C8 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006470) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [C8 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006470) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [C8 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006470) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### L1 segment of lumbar spinal cord `http://purl.obolibrary.org/obo/UBERON_0006448` +#### Removed +- [L1 segment of lumbar spinal cord](http://purl.obolibrary.org/obo/UBERON_0006448) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [L1 segment of lumbar spinal cord](http://purl.obolibrary.org/obo/UBERON_0006448) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [L1 segment of lumbar spinal cord](http://purl.obolibrary.org/obo/UBERON_0006448) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [L1 segment of lumbar spinal cord](http://purl.obolibrary.org/obo/UBERON_0006448) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### L2 segment of lumbar spinal cord `http://purl.obolibrary.org/obo/UBERON_0006450` +#### Removed +- [L2 segment of lumbar spinal cord](http://purl.obolibrary.org/obo/UBERON_0006450) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [L2 segment of lumbar spinal cord](http://purl.obolibrary.org/obo/UBERON_0006450) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [L2 segment of lumbar spinal cord](http://purl.obolibrary.org/obo/UBERON_0006450) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [L2 segment of lumbar spinal cord](http://purl.obolibrary.org/obo/UBERON_0006450) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### L3 segment of lumbar spinal cord `http://purl.obolibrary.org/obo/UBERON_0006449` +#### Removed +- [L3 segment of lumbar spinal cord](http://purl.obolibrary.org/obo/UBERON_0006449) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [L3 segment of lumbar spinal cord](http://purl.obolibrary.org/obo/UBERON_0006449) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [L3 segment of lumbar spinal cord](http://purl.obolibrary.org/obo/UBERON_0006449) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [L3 segment of lumbar spinal cord](http://purl.obolibrary.org/obo/UBERON_0006449) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### L4 segment of lumbar spinal cord `http://purl.obolibrary.org/obo/UBERON_0006451` +#### Removed +- [L4 segment of lumbar spinal cord](http://purl.obolibrary.org/obo/UBERON_0006451) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [L4 segment of lumbar spinal cord](http://purl.obolibrary.org/obo/UBERON_0006451) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [L4 segment of lumbar spinal cord](http://purl.obolibrary.org/obo/UBERON_0006451) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [L4 segment of lumbar spinal cord](http://purl.obolibrary.org/obo/UBERON_0006451) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### L5 segment of lumbar spinal cord `http://purl.obolibrary.org/obo/UBERON_0006447` +#### Removed +- [L5 segment of lumbar spinal cord](http://purl.obolibrary.org/obo/UBERON_0006447) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [L5 segment of lumbar spinal cord](http://purl.obolibrary.org/obo/UBERON_0006447) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [L5 segment of lumbar spinal cord](http://purl.obolibrary.org/obo/UBERON_0006447) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [L5 segment of lumbar spinal cord](http://purl.obolibrary.org/obo/UBERON_0006447) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### S1 segment of sacral spinal cord `http://purl.obolibrary.org/obo/UBERON_0006460` +#### Removed +- [S1 segment of sacral spinal cord](http://purl.obolibrary.org/obo/UBERON_0006460) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [S1 segment of sacral spinal cord](http://purl.obolibrary.org/obo/UBERON_0006460) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [S1 segment of sacral spinal cord](http://purl.obolibrary.org/obo/UBERON_0006460) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [S1 segment of sacral spinal cord](http://purl.obolibrary.org/obo/UBERON_0006460) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### S2 segment of sacral spinal cord `http://purl.obolibrary.org/obo/UBERON_0006461` +#### Removed +- [S2 segment of sacral spinal cord](http://purl.obolibrary.org/obo/UBERON_0006461) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [S2 segment of sacral spinal cord](http://purl.obolibrary.org/obo/UBERON_0006461) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [S2 segment of sacral spinal cord](http://purl.obolibrary.org/obo/UBERON_0006461) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [S2 segment of sacral spinal cord](http://purl.obolibrary.org/obo/UBERON_0006461) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### S3 segment of sacral spinal cord `http://purl.obolibrary.org/obo/UBERON_0006462` +#### Removed +- [S3 segment of sacral spinal cord](http://purl.obolibrary.org/obo/UBERON_0006462) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [S3 segment of sacral spinal cord](http://purl.obolibrary.org/obo/UBERON_0006462) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [S3 segment of sacral spinal cord](http://purl.obolibrary.org/obo/UBERON_0006462) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [S3 segment of sacral spinal cord](http://purl.obolibrary.org/obo/UBERON_0006462) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### S4 segment of sacral spinal cord `http://purl.obolibrary.org/obo/UBERON_0006463` +#### Removed +- [S4 segment of sacral spinal cord](http://purl.obolibrary.org/obo/UBERON_0006463) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [S4 segment of sacral spinal cord](http://purl.obolibrary.org/obo/UBERON_0006463) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [S4 segment of sacral spinal cord](http://purl.obolibrary.org/obo/UBERON_0006463) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [S4 segment of sacral spinal cord](http://purl.obolibrary.org/obo/UBERON_0006463) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### S5 segment of sacral spinal cord `http://purl.obolibrary.org/obo/UBERON_0006464` +#### Removed +- [S5 segment of sacral spinal cord](http://purl.obolibrary.org/obo/UBERON_0006464) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [S5 segment of sacral spinal cord](http://purl.obolibrary.org/obo/UBERON_0006464) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### SubsetProperty `http://www.geneontology.org/formats/oboInOwl#SubsetProperty` + +#### Added +- AnnotationProperty: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### SynonymTypeProperty `http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty` + +#### Added +- AnnotationProperty: [SynonymTypeProperty](http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty) + + +### T1 segment of thoracic spinal cord `http://purl.obolibrary.org/obo/UBERON_0006457` +#### Removed +- [T1 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006457) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [T1 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006457) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [T1 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006457) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [T1 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006457) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### T10 segment of thoracic spinal cord `http://purl.obolibrary.org/obo/UBERON_0006466` +#### Removed +- [T10 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006466) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [T10 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006466) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [T10 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006466) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [T10 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006466) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### T11 segment of thoracic spinal cord `http://purl.obolibrary.org/obo/UBERON_0006467` +#### Removed +- [T11 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006467) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [T11 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006467) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [T11 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006467) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [T11 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006467) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### T12 segment of thoracic spinal cord `http://purl.obolibrary.org/obo/UBERON_0006468` +#### Removed +- [T12 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006468) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [T12 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006468) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [T12 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006468) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [T12 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006468) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### T2 segment of thoracic spinal cord `http://purl.obolibrary.org/obo/UBERON_0006458` +#### Removed +- [T2 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006458) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [T2 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006458) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [T2 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006458) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [T2 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006458) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### T3 segment of thoracic spinal cord `http://purl.obolibrary.org/obo/UBERON_0006459` +#### Removed +- [T3 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006459) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [T3 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006459) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [T3 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006459) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [T3 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006459) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### T4 segment of thoracic spinal cord `http://purl.obolibrary.org/obo/UBERON_0006452` +#### Removed +- [T4 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006452) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [T4 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006452) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [T4 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006452) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [T4 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006452) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### T5 segment of thoracic spinal cord `http://purl.obolibrary.org/obo/UBERON_0006453` +#### Removed +- [T5 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006453) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [T5 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006453) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [T5 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006453) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [T5 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006453) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### T6 segment of thoracic spinal cord `http://purl.obolibrary.org/obo/UBERON_0006454` +#### Removed +- [T6 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006454) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [T6 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006454) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [T6 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006454) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [T6 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006454) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### T7 segment of thoracic spinal cord `http://purl.obolibrary.org/obo/UBERON_0006455` +#### Removed +- [T7 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006455) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [T7 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006455) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [T7 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006455) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [T7 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006455) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### T8 segment of thoracic spinal cord `http://purl.obolibrary.org/obo/UBERON_0006456` +#### Removed +- [T8 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006456) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [T8 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006456) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [T8 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006456) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [T8 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006456) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### T9 segment of thoracic spinal cord `http://purl.obolibrary.org/obo/UBERON_0006465` +#### Removed +- [T9 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006465) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [T9 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006465) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [T9 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006465) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [T9 segment of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0006465) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### a mis-spelling that is in common use and thus recorded `http://purl.obolibrary.org/obo/uberon/core#MISSPELLING` + +#### Added +- [a mis-spelling that is in common use and thus recorded](http://purl.obolibrary.org/obo/uberon/core#MISSPELLING) SubPropertyOf: [SynonymTypeProperty](http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty) + + +### a synonym made on the basis of a possibly homologous structure in another species `http://purl.obolibrary.org/obo/uberon/core#HOMOLOGY` + +#### Added +- [a synonym made on the basis of a possibly homologous structure in another species](http://purl.obolibrary.org/obo/uberon/core#HOMOLOGY) SubPropertyOf: [SynonymTypeProperty](http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty) + + +### a systematic synonym used as the base name for design patterns `http://purl.obolibrary.org/obo/uberon/core#SYSTEMATIC` + +#### Added +- [a systematic synonym used as the base name for design patterns](http://purl.obolibrary.org/obo/uberon/core#SYSTEMATIC) SubPropertyOf: [SynonymTypeProperty](http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty) + + +### accessory XI nerve `http://purl.obolibrary.org/obo/UBERON_0002019` +#### Removed +- [accessory XI nerve](http://purl.obolibrary.org/obo/UBERON_0002019) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HBA:9340" + + + +### accessory nerve root `http://purl.obolibrary.org/obo/UBERON_0014615` + +#### Added +- [accessory nerve root](http://purl.obolibrary.org/obo/UBERON_0014615) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HBA:9340" + + +### added_for_HCA `http://purl.obolibrary.org/obo/uberon/core#added_for_HCA` + +#### Added +- [added_for_HCA](http://purl.obolibrary.org/obo/uberon/core#added_for_HCA) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### afferent lymphatic vessel `http://purl.obolibrary.org/obo/UBERON_0010396` +#### Removed +- [afferent lymphatic vessel](http://purl.obolibrary.org/obo/UBERON_0010396) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [afferent lymphatic vessel](http://purl.obolibrary.org/obo/UBERON_0010396) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [afferent lymphatic vessel](http://purl.obolibrary.org/obo/UBERON_0010396) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-left/v1.0/assets/NIH_F_Lymph_Node_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [afferent lymphatic vessel](http://purl.obolibrary.org/obo/UBERON_0010396) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [afferent lymphatic vessel](http://purl.obolibrary.org/obo/UBERON_0010396) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [afferent lymphatic vessel](http://purl.obolibrary.org/obo/UBERON_0010396) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [afferent lymphatic vessel](http://purl.obolibrary.org/obo/UBERON_0010396) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.2/assets/NIH_M_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [afferent lymphatic vessel](http://purl.obolibrary.org/obo/UBERON_0010396) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.2/assets/NIH_F_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [afferent lymphatic vessel](http://purl.obolibrary.org/obo/UBERON_0010396) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [afferent lymphatic vessel](http://purl.obolibrary.org/obo/UBERON_0010396) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-right/v1.0/assets/NIH_F_Lymph_Node_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### amnion `http://purl.obolibrary.org/obo/UBERON_0000305` +#### Removed +- [amnion](http://purl.obolibrary.org/obo/UBERON_0000305) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Placenta.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [amnion](http://purl.obolibrary.org/obo/UBERON_0000305) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/placenta-full-term-female/v1.0/assets/VH_F_Placenta.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### anterior cingulate gyrus `http://purl.obolibrary.org/obo/UBERON_0002756` +#### Removed +- [anterior cingulate gyrus](http://purl.obolibrary.org/obo/UBERON_0002756) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [anterior cingulate gyrus](http://purl.obolibrary.org/obo/UBERON_0002756) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [anterior cingulate gyrus](http://purl.obolibrary.org/obo/UBERON_0002756) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [anterior cingulate gyrus](http://purl.obolibrary.org/obo/UBERON_0002756) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [anterior cingulate gyrus](http://purl.obolibrary.org/obo/UBERON_0002756) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [anterior cingulate gyrus](http://purl.obolibrary.org/obo/UBERON_0002756) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [anterior cingulate gyrus](http://purl.obolibrary.org/obo/UBERON_0002756) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [anterior cingulate gyrus](http://purl.obolibrary.org/obo/UBERON_0002756) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### anterior commissure `http://purl.obolibrary.org/obo/UBERON_0000935` +#### Removed +- [anterior commissure](http://purl.obolibrary.org/obo/UBERON_0000935) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [anterior commissure](http://purl.obolibrary.org/obo/UBERON_0000935) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [anterior commissure](http://purl.obolibrary.org/obo/UBERON_0000935) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [anterior commissure](http://purl.obolibrary.org/obo/UBERON_0000935) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [anterior commissure](http://purl.obolibrary.org/obo/UBERON_0000935) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [anterior commissure](http://purl.obolibrary.org/obo/UBERON_0000935) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [anterior commissure](http://purl.obolibrary.org/obo/UBERON_0000935) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [anterior commissure](http://purl.obolibrary.org/obo/UBERON_0000935) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### anterior olfactory nucleus `http://purl.obolibrary.org/obo/UBERON_0002266` +#### Removed +- [anterior olfactory nucleus](http://purl.obolibrary.org/obo/UBERON_0002266) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [anterior olfactory nucleus](http://purl.obolibrary.org/obo/UBERON_0002266) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [anterior olfactory nucleus](http://purl.obolibrary.org/obo/UBERON_0002266) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [anterior olfactory nucleus](http://purl.obolibrary.org/obo/UBERON_0002266) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [anterior olfactory nucleus](http://purl.obolibrary.org/obo/UBERON_0002266) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [anterior olfactory nucleus](http://purl.obolibrary.org/obo/UBERON_0002266) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [anterior olfactory nucleus](http://purl.obolibrary.org/obo/UBERON_0002266) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [anterior olfactory nucleus](http://purl.obolibrary.org/obo/UBERON_0002266) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [anterior olfactory nucleus](http://purl.obolibrary.org/obo/UBERON_0002266) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.0/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [anterior olfactory nucleus](http://purl.obolibrary.org/obo/UBERON_0002266) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.0/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### anterior parahippocampal gyrus `http://purl.obolibrary.org/obo/UBERON_0022383` +#### Removed +- [anterior parahippocampal gyrus](http://purl.obolibrary.org/obo/UBERON_0022383) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [anterior parahippocampal gyrus](http://purl.obolibrary.org/obo/UBERON_0022383) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [anterior parahippocampal gyrus](http://purl.obolibrary.org/obo/UBERON_0022383) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [anterior parahippocampal gyrus](http://purl.obolibrary.org/obo/UBERON_0022383) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [anterior parahippocampal gyrus](http://purl.obolibrary.org/obo/UBERON_0022383) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [anterior parahippocampal gyrus](http://purl.obolibrary.org/obo/UBERON_0022383) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [anterior parahippocampal gyrus](http://purl.obolibrary.org/obo/UBERON_0022383) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [anterior parahippocampal gyrus](http://purl.obolibrary.org/obo/UBERON_0022383) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### anterior segment of paracentral lobule `http://purl.obolibrary.org/obo/UBERON_0035932` +#### Removed +- [anterior segment of paracentral lobule](http://purl.obolibrary.org/obo/UBERON_0035932) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [anterior segment of paracentral lobule](http://purl.obolibrary.org/obo/UBERON_0035932) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [anterior segment of paracentral lobule](http://purl.obolibrary.org/obo/UBERON_0035932) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [anterior segment of paracentral lobule](http://purl.obolibrary.org/obo/UBERON_0035932) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [anterior segment of paracentral lobule](http://purl.obolibrary.org/obo/UBERON_0035932) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [anterior segment of paracentral lobule](http://purl.obolibrary.org/obo/UBERON_0035932) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [anterior segment of paracentral lobule](http://purl.obolibrary.org/obo/UBERON_0035932) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [anterior segment of paracentral lobule](http://purl.obolibrary.org/obo/UBERON_0035932) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### aorta `http://purl.obolibrary.org/obo/UBERON_0000947` +#### Removed +- [aorta](http://purl.obolibrary.org/obo/UBERON_0000947) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [aorta](http://purl.obolibrary.org/obo/UBERON_0000947) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [aorta](http://purl.obolibrary.org/obo/UBERON_0000947) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [aorta](http://purl.obolibrary.org/obo/UBERON_0000947) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [aorta](http://purl.obolibrary.org/obo/UBERON_0000947) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [aorta](http://purl.obolibrary.org/obo/UBERON_0000947) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [aorta](http://purl.obolibrary.org/obo/UBERON_0000947) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [aorta](http://purl.obolibrary.org/obo/UBERON_0000947) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### aortic plexus `http://purl.obolibrary.org/obo/UBERON_0035772` + +#### Added +- [aortic plexus](http://purl.obolibrary.org/obo/UBERON_0035772) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [aortic plexus](http://purl.obolibrary.org/obo/UBERON_0035772) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### aortic valve `http://purl.obolibrary.org/obo/UBERON_0002137` +#### Removed +- [aortic valve](http://purl.obolibrary.org/obo/UBERON_0002137) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [aortic valve](http://purl.obolibrary.org/obo/UBERON_0002137) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [aortic valve](http://purl.obolibrary.org/obo/UBERON_0002137) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [aortic valve](http://purl.obolibrary.org/obo/UBERON_0002137) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [aortic valve](http://purl.obolibrary.org/obo/UBERON_0002137) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [aortic valve](http://purl.obolibrary.org/obo/UBERON_0002137) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [aortic valve](http://purl.obolibrary.org/obo/UBERON_0002137) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [aortic valve](http://purl.obolibrary.org/obo/UBERON_0002137) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### apex of prostate `http://purl.obolibrary.org/obo/UBERON_0035441` +#### Removed +- [apex of prostate](http://purl.obolibrary.org/obo/UBERON_0035441) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [apex of prostate](http://purl.obolibrary.org/obo/UBERON_0035441) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [apex of prostate](http://purl.obolibrary.org/obo/UBERON_0035441) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### arch of aorta `http://purl.obolibrary.org/obo/UBERON_0001508` +#### Removed +- [arch of aorta](http://purl.obolibrary.org/obo/UBERON_0001508) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [arch of aorta](http://purl.obolibrary.org/obo/UBERON_0001508) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [arch of aorta](http://purl.obolibrary.org/obo/UBERON_0001508) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [arch of aorta](http://purl.obolibrary.org/obo/UBERON_0001508) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [arch of aorta](http://purl.obolibrary.org/obo/UBERON_0001508) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [arch of aorta](http://purl.obolibrary.org/obo/UBERON_0001508) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [arch of aorta](http://purl.obolibrary.org/obo/UBERON_0001508) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [arch of aorta](http://purl.obolibrary.org/obo/UBERON_0001508) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### areolar tubercle `http://purl.obolibrary.org/obo/UBERON_0011828` +#### Removed +- [areolar tubercle](http://purl.obolibrary.org/obo/UBERON_0011828) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-l.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [areolar tubercle](http://purl.obolibrary.org/obo/UBERON_0011828) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-r.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [areolar tubercle](http://purl.obolibrary.org/obo/UBERON_0011828) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-right/v1.0/assets/3d-vh-f-mammary-gland-r.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [areolar tubercle](http://purl.obolibrary.org/obo/UBERON_0011828) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-left/v1.0/assets/3d-vh-f-mammary-gland-l.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### artery `http://purl.obolibrary.org/obo/UBERON_0001637` + +#### Added +- [artery](http://purl.obolibrary.org/obo/UBERON_0001637) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [artery](http://purl.obolibrary.org/obo/UBERON_0001637) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### arytenoid cartilage `http://purl.obolibrary.org/obo/UBERON_0001740` +#### Removed +- [arytenoid cartilage](http://purl.obolibrary.org/obo/UBERON_0001740) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-larynx.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [arytenoid cartilage](http://purl.obolibrary.org/obo/UBERON_0001740) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-larynx.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [arytenoid cartilage](http://purl.obolibrary.org/obo/UBERON_0001740) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.0/assets/3d-vh-f-larynx.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [arytenoid cartilage](http://purl.obolibrary.org/obo/UBERON_0001740) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [arytenoid cartilage](http://purl.obolibrary.org/obo/UBERON_0001740) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.0/assets/3d-vh-m-larynx.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [arytenoid cartilage](http://purl.obolibrary.org/obo/UBERON_0001740) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [arytenoid cartilage](http://purl.obolibrary.org/obo/UBERON_0001740) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [arytenoid cartilage](http://purl.obolibrary.org/obo/UBERON_0001740) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [arytenoid cartilage](http://purl.obolibrary.org/obo/UBERON_0001740) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### arytenoid muscle `http://purl.obolibrary.org/obo/UBERON_0010958` + +#### Added +- [arytenoid muscle](http://purl.obolibrary.org/obo/UBERON_0010958) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [arytenoid muscle](http://purl.obolibrary.org/obo/UBERON_0010958) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### ascending aorta `http://purl.obolibrary.org/obo/UBERON_0001496` +#### Removed +- [ascending aorta](http://purl.obolibrary.org/obo/UBERON_0001496) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ascending aorta](http://purl.obolibrary.org/obo/UBERON_0001496) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [ascending aorta](http://purl.obolibrary.org/obo/UBERON_0001496) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ascending aorta](http://purl.obolibrary.org/obo/UBERON_0001496) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ascending aorta](http://purl.obolibrary.org/obo/UBERON_0001496) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ascending aorta](http://purl.obolibrary.org/obo/UBERON_0001496) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ascending aorta](http://purl.obolibrary.org/obo/UBERON_0001496) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ascending aorta](http://purl.obolibrary.org/obo/UBERON_0001496) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### ascending colon `http://purl.obolibrary.org/obo/UBERON_0001156` +#### Removed +- [ascending colon](http://purl.obolibrary.org/obo/UBERON_0001156) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ascending colon](http://purl.obolibrary.org/obo/UBERON_0001156) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [ascending colon](http://purl.obolibrary.org/obo/UBERON_0001156) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ascending colon](http://purl.obolibrary.org/obo/UBERON_0001156) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ascending colon](http://purl.obolibrary.org/obo/UBERON_0001156) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ascending colon](http://purl.obolibrary.org/obo/UBERON_0001156) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ascending colon](http://purl.obolibrary.org/obo/UBERON_0001156) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ascending colon](http://purl.obolibrary.org/obo/UBERON_0001156) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### autonomic nerve `http://purl.obolibrary.org/obo/UBERON_0034728` + +#### Added +- [autonomic nerve](http://purl.obolibrary.org/obo/UBERON_0034728) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [autonomic nerve](http://purl.obolibrary.org/obo/UBERON_0034728) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### bare area of liver `http://purl.obolibrary.org/obo/UBERON_0001149` +#### Removed +- [bare area of liver](http://purl.obolibrary.org/obo/UBERON_0001149) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [bare area of liver](http://purl.obolibrary.org/obo/UBERON_0001149) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [bare area of liver](http://purl.obolibrary.org/obo/UBERON_0001149) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [bare area of liver](http://purl.obolibrary.org/obo/UBERON_0001149) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [bare area of liver](http://purl.obolibrary.org/obo/UBERON_0001149) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [bare area of liver](http://purl.obolibrary.org/obo/UBERON_0001149) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### base of prostate `http://purl.obolibrary.org/obo/UBERON_0035331` +#### Removed +- [base of prostate](http://purl.obolibrary.org/obo/UBERON_0035331) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [base of prostate](http://purl.obolibrary.org/obo/UBERON_0035331) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [base of prostate](http://purl.obolibrary.org/obo/UBERON_0035331) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### blood vasculature `http://purl.obolibrary.org/obo/UBERON_0004537` +#### Removed +- [blood vasculature](http://purl.obolibrary.org/obo/UBERON_0004537) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [blood vasculature](http://purl.obolibrary.org/obo/UBERON_0004537) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [blood vasculature](http://purl.obolibrary.org/obo/UBERON_0004537) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [blood vasculature](http://purl.obolibrary.org/obo/UBERON_0004537) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [blood vasculature](http://purl.obolibrary.org/obo/UBERON_0004537) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### body of pancreas `http://purl.obolibrary.org/obo/UBERON_0001150` +#### Removed +- [body of pancreas](http://purl.obolibrary.org/obo/UBERON_0001150) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [body of pancreas](http://purl.obolibrary.org/obo/UBERON_0001150) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [body of pancreas](http://purl.obolibrary.org/obo/UBERON_0001150) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.2/assets/3d-vh-m-pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [body of pancreas](http://purl.obolibrary.org/obo/UBERON_0001150) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.0/assets/VH_M_Pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [body of pancreas](http://purl.obolibrary.org/obo/UBERON_0001150) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.2/assets/3d-vh-f-pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [body of pancreas](http://purl.obolibrary.org/obo/UBERON_0001150) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.1/assets/VH_M_Pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [body of pancreas](http://purl.obolibrary.org/obo/UBERON_0001150) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.1/assets/VH_F_Pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [body of pancreas](http://purl.obolibrary.org/obo/UBERON_0001150) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.0/assets/VH_F_Pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### body of uterus `http://purl.obolibrary.org/obo/UBERON_0009853` +#### Removed +- [body of uterus](http://purl.obolibrary.org/obo/UBERON_0009853) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Uterus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [body of uterus](http://purl.obolibrary.org/obo/UBERON_0009853) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.0/assets/VH_F_Uterus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [body of uterus](http://purl.obolibrary.org/obo/UBERON_0009853) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.1/assets/VH_F_Uterus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### bony pelvis `http://purl.obolibrary.org/obo/UBERON_0001270` +#### Removed +- [bony pelvis](http://purl.obolibrary.org/obo/UBERON_0001270) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [bony pelvis](http://purl.obolibrary.org/obo/UBERON_0001270) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [bony pelvis](http://purl.obolibrary.org/obo/UBERON_0001270) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.2/assets/VH_M_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [bony pelvis](http://purl.obolibrary.org/obo/UBERON_0001270) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.1/assets/VH_M_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [bony pelvis](http://purl.obolibrary.org/obo/UBERON_0001270) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.0/assets/VH_F_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [bony pelvis](http://purl.obolibrary.org/obo/UBERON_0001270) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.2/assets/VH_F_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [bony pelvis](http://purl.obolibrary.org/obo/UBERON_0001270) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.1/assets/VH_F_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [bony pelvis](http://purl.obolibrary.org/obo/UBERON_0001270) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.0/assets/VH_M_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### brachiocephalic artery `http://purl.obolibrary.org/obo/UBERON_0001529` +#### Removed +- [brachiocephalic artery](http://purl.obolibrary.org/obo/UBERON_0001529) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [brachiocephalic artery](http://purl.obolibrary.org/obo/UBERON_0001529) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [brachiocephalic artery](http://purl.obolibrary.org/obo/UBERON_0001529) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [brachiocephalic artery](http://purl.obolibrary.org/obo/UBERON_0001529) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [brachiocephalic artery](http://purl.obolibrary.org/obo/UBERON_0001529) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [brachiocephalic artery](http://purl.obolibrary.org/obo/UBERON_0001529) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [brachiocephalic artery](http://purl.obolibrary.org/obo/UBERON_0001529) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [brachiocephalic artery](http://purl.obolibrary.org/obo/UBERON_0001529) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### brain `http://purl.obolibrary.org/obo/UBERON_0000955` +#### Removed +- [brain](http://purl.obolibrary.org/obo/UBERON_0000955) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [brain](http://purl.obolibrary.org/obo/UBERON_0000955) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [brain](http://purl.obolibrary.org/obo/UBERON_0000955) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [brain](http://purl.obolibrary.org/obo/UBERON_0000955) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [brain](http://purl.obolibrary.org/obo/UBERON_0000955) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.0/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [brain](http://purl.obolibrary.org/obo/UBERON_0000955) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [brain](http://purl.obolibrary.org/obo/UBERON_0000955) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [brain](http://purl.obolibrary.org/obo/UBERON_0000955) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [brain](http://purl.obolibrary.org/obo/UBERON_0000955) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.0/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [brain](http://purl.obolibrary.org/obo/UBERON_0000955) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### brain name abbreviations (drosophila) `http://purl.obolibrary.org/obo/uberon/core#BRAIN_NAME_ABV` + +#### Added +- [brain name abbreviations (drosophila)](http://purl.obolibrary.org/obo/uberon/core#BRAIN_NAME_ABV) SubPropertyOf: [SynonymTypeProperty](http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty) + + +### bronchus `http://purl.obolibrary.org/obo/UBERON_0002185` +#### Removed +- [bronchus](http://purl.obolibrary.org/obo/UBERON_0002185) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [bronchus](http://purl.obolibrary.org/obo/UBERON_0002185) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [bronchus](http://purl.obolibrary.org/obo/UBERON_0002185) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [bronchus](http://purl.obolibrary.org/obo/UBERON_0002185) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [bronchus](http://purl.obolibrary.org/obo/UBERON_0002185) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [bronchus](http://purl.obolibrary.org/obo/UBERON_0002185) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [bronchus](http://purl.obolibrary.org/obo/UBERON_0002185) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [bronchus](http://purl.obolibrary.org/obo/UBERON_0002185) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.0/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [bronchus](http://purl.obolibrary.org/obo/UBERON_0002185) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [bronchus](http://purl.obolibrary.org/obo/UBERON_0002185) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### caecum `http://purl.obolibrary.org/obo/UBERON_0001153` +#### Removed +- [caecum](http://purl.obolibrary.org/obo/UBERON_0001153) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [caecum](http://purl.obolibrary.org/obo/UBERON_0001153) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [caecum](http://purl.obolibrary.org/obo/UBERON_0001153) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [caecum](http://purl.obolibrary.org/obo/UBERON_0001153) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [caecum](http://purl.obolibrary.org/obo/UBERON_0001153) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [caecum](http://purl.obolibrary.org/obo/UBERON_0001153) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [caecum](http://purl.obolibrary.org/obo/UBERON_0001153) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [caecum](http://purl.obolibrary.org/obo/UBERON_0001153) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### capsule of liver `http://purl.obolibrary.org/obo/UBERON_0016479` +#### Removed +- [capsule of liver](http://purl.obolibrary.org/obo/UBERON_0016479) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [capsule of liver](http://purl.obolibrary.org/obo/UBERON_0016479) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [capsule of liver](http://purl.obolibrary.org/obo/UBERON_0016479) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [capsule of liver](http://purl.obolibrary.org/obo/UBERON_0016479) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [capsule of liver](http://purl.obolibrary.org/obo/UBERON_0016479) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [capsule of liver](http://purl.obolibrary.org/obo/UBERON_0016479) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### capsule of lymph node `http://purl.obolibrary.org/obo/UBERON_0002194` +#### Removed +- [capsule of lymph node](http://purl.obolibrary.org/obo/UBERON_0002194) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [capsule of lymph node](http://purl.obolibrary.org/obo/UBERON_0002194) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [capsule of lymph node](http://purl.obolibrary.org/obo/UBERON_0002194) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [capsule of lymph node](http://purl.obolibrary.org/obo/UBERON_0002194) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-left/v1.0/assets/NIH_F_Lymph_Node_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [capsule of lymph node](http://purl.obolibrary.org/obo/UBERON_0002194) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [capsule of lymph node](http://purl.obolibrary.org/obo/UBERON_0002194) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [capsule of lymph node](http://purl.obolibrary.org/obo/UBERON_0002194) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.2/assets/NIH_F_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [capsule of lymph node](http://purl.obolibrary.org/obo/UBERON_0002194) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-right/v1.0/assets/NIH_F_Lymph_Node_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [capsule of lymph node](http://purl.obolibrary.org/obo/UBERON_0002194) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.2/assets/NIH_M_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [capsule of lymph node](http://purl.obolibrary.org/obo/UBERON_0002194) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### cardiac vein `http://purl.obolibrary.org/obo/UBERON_0004148` +#### Removed +- [cardiac vein](http://purl.obolibrary.org/obo/UBERON_0004148) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cardiac vein](http://purl.obolibrary.org/obo/UBERON_0004148) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [cardiac vein](http://purl.obolibrary.org/obo/UBERON_0004148) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cardiac vein](http://purl.obolibrary.org/obo/UBERON_0004148) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cardiac vein](http://purl.obolibrary.org/obo/UBERON_0004148) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cardiac vein](http://purl.obolibrary.org/obo/UBERON_0004148) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cardiac vein](http://purl.obolibrary.org/obo/UBERON_0004148) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cardiac vein](http://purl.obolibrary.org/obo/UBERON_0004148) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### carina of trachea `http://purl.obolibrary.org/obo/UBERON_0006679` +#### Removed +- [carina of trachea](http://purl.obolibrary.org/obo/UBERON_0006679) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-trachea.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [carina of trachea](http://purl.obolibrary.org/obo/UBERON_0006679) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-trachea.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [carina of trachea](http://purl.obolibrary.org/obo/UBERON_0006679) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/trachea-female/v1.0/assets/3d-vh-f-trachea.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [carina of trachea](http://purl.obolibrary.org/obo/UBERON_0006679) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/trachea-male/v1.0/assets/3d-vh-m-trachea.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### carotid sinus nerve `http://purl.obolibrary.org/obo/UBERON_0009009` + +#### Added +- [carotid sinus nerve](http://purl.obolibrary.org/obo/UBERON_0009009) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [carotid sinus nerve](http://purl.obolibrary.org/obo/UBERON_0009009) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### cartilage of respiratory system `http://purl.obolibrary.org/obo/UBERON_0003406` + +#### Added +- [cartilage of respiratory system](http://purl.obolibrary.org/obo/UBERON_0003406) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.0/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### caudate lobe of liver `http://purl.obolibrary.org/obo/UBERON_0001117` +#### Removed +- [caudate lobe of liver](http://purl.obolibrary.org/obo/UBERON_0001117) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [caudate lobe of liver](http://purl.obolibrary.org/obo/UBERON_0001117) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [caudate lobe of liver](http://purl.obolibrary.org/obo/UBERON_0001117) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [caudate lobe of liver](http://purl.obolibrary.org/obo/UBERON_0001117) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [caudate lobe of liver](http://purl.obolibrary.org/obo/UBERON_0001117) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [caudate lobe of liver](http://purl.obolibrary.org/obo/UBERON_0001117) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### celiac artery `http://purl.obolibrary.org/obo/UBERON_0001640` + +#### Added +- [celiac artery](http://purl.obolibrary.org/obo/UBERON_0001640) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [celiac artery](http://purl.obolibrary.org/obo/UBERON_0001640) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### central zone of prostate `http://purl.obolibrary.org/obo/UBERON_8410027` +#### Removed +- [central zone of prostate](http://purl.obolibrary.org/obo/UBERON_8410027) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [central zone of prostate](http://purl.obolibrary.org/obo/UBERON_8410027) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [central zone of prostate](http://purl.obolibrary.org/obo/UBERON_8410027) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### cerebellar vermis `http://purl.obolibrary.org/obo/UBERON_0004720` +#### Removed +- [cerebellar vermis](http://purl.obolibrary.org/obo/UBERON_0004720) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cerebellar vermis](http://purl.obolibrary.org/obo/UBERON_0004720) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [cerebellar vermis](http://purl.obolibrary.org/obo/UBERON_0004720) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cerebellar vermis](http://purl.obolibrary.org/obo/UBERON_0004720) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cerebellar vermis](http://purl.obolibrary.org/obo/UBERON_0004720) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cerebellar vermis](http://purl.obolibrary.org/obo/UBERON_0004720) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cerebellar vermis](http://purl.obolibrary.org/obo/UBERON_0004720) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cerebellar vermis](http://purl.obolibrary.org/obo/UBERON_0004720) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### cerebral peduncle `http://purl.obolibrary.org/obo/UBERON_0002623` +#### Removed +- [cerebral peduncle](http://purl.obolibrary.org/obo/UBERON_0002623) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cerebral peduncle](http://purl.obolibrary.org/obo/UBERON_0002623) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [cerebral peduncle](http://purl.obolibrary.org/obo/UBERON_0002623) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cerebral peduncle](http://purl.obolibrary.org/obo/UBERON_0002623) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cerebral peduncle](http://purl.obolibrary.org/obo/UBERON_0002623) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cerebral peduncle](http://purl.obolibrary.org/obo/UBERON_0002623) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cerebral peduncle](http://purl.obolibrary.org/obo/UBERON_0002623) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cerebral peduncle](http://purl.obolibrary.org/obo/UBERON_0002623) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### channel for `http://purl.obolibrary.org/obo/uberon/core#channel_for` + +#### Added +- [channel for](http://purl.obolibrary.org/obo/uberon/core#channel_for) Domain [anatomical conduit](http://purl.obolibrary.org/obo/UBERON_0004111) + +- [channel for](http://purl.obolibrary.org/obo/uberon/core#channel_for) Range [organism substance](http://purl.obolibrary.org/obo/UBERON_0000463) + + +### channels_from `http://purl.obolibrary.org/obo/uberon/core#channels_from` + +#### Added +- Transitive: [channels_from](http://purl.obolibrary.org/obo/uberon/core#channels_from) + + +### channels_into `http://purl.obolibrary.org/obo/uberon/core#channels_into` + +#### Added +- Transitive: [channels_into](http://purl.obolibrary.org/obo/uberon/core#channels_into) + + +### chorda tympani branch of facial nerve `http://purl.obolibrary.org/obo/UBERON_0009675` + +#### Added +- [chorda tympani branch of facial nerve](http://purl.obolibrary.org/obo/UBERON_0009675) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [chorda tympani branch of facial nerve](http://purl.obolibrary.org/obo/UBERON_0009675) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### chorionic immature intermediate villus `http://purl.obolibrary.org/obo/UBERON_8600029` + +#### Added +- [chorionic immature intermediate villus](http://purl.obolibrary.org/obo/UBERON_8600029) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [chorionic immature intermediate villus](http://purl.obolibrary.org/obo/UBERON_8600029) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### chorionic mature intermediate villus `http://purl.obolibrary.org/obo/UBERON_8600031` + +#### Added +- [chorionic mature intermediate villus](http://purl.obolibrary.org/obo/UBERON_8600031) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [chorionic mature intermediate villus](http://purl.obolibrary.org/obo/UBERON_8600031) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### chorionic mesenchymal villus `http://purl.obolibrary.org/obo/UBERON_8600028` + +#### Added +- [chorionic mesenchymal villus](http://purl.obolibrary.org/obo/UBERON_8600028) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [chorionic mesenchymal villus](http://purl.obolibrary.org/obo/UBERON_8600028) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### chorionic plate `http://purl.obolibrary.org/obo/UBERON_0004027` +#### Removed +- [chorionic plate](http://purl.obolibrary.org/obo/UBERON_0004027) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Placenta.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [chorionic plate](http://purl.obolibrary.org/obo/UBERON_0004027) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/placenta-full-term-female/v1.0/assets/VH_F_Placenta.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### chorionic stem villous blood vessel `http://purl.obolibrary.org/obo/UBERON_8600040` + +#### Added +- [chorionic stem villous blood vessel](http://purl.obolibrary.org/obo/UBERON_8600040) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [chorionic stem villous blood vessel](http://purl.obolibrary.org/obo/UBERON_8600040) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### chorionic stem villus `http://purl.obolibrary.org/obo/UBERON_8600027` + +#### Added +- [chorionic stem villus](http://purl.obolibrary.org/obo/UBERON_8600027) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [chorionic stem villus](http://purl.obolibrary.org/obo/UBERON_8600027) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### chorionic terminal villous capillary `http://purl.obolibrary.org/obo/UBERON_8600041` + +#### Added +- [chorionic terminal villous capillary](http://purl.obolibrary.org/obo/UBERON_8600041) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [chorionic terminal villous capillary](http://purl.obolibrary.org/obo/UBERON_8600041) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### chorionic terminal villus `http://purl.obolibrary.org/obo/UBERON_8600030` + +#### Added +- [chorionic terminal villus](http://purl.obolibrary.org/obo/UBERON_8600030) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [chorionic terminal villus](http://purl.obolibrary.org/obo/UBERON_8600030) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### chorionic villous mesenchyme `http://purl.obolibrary.org/obo/UBERON_8600039` + +#### Added +- [chorionic villous mesenchyme](http://purl.obolibrary.org/obo/UBERON_8600039) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [chorionic villous mesenchyme](http://purl.obolibrary.org/obo/UBERON_8600039) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### chorionic villous tree `http://purl.obolibrary.org/obo/UBERON_8600026` + +#### Added +- [chorionic villous tree](http://purl.obolibrary.org/obo/UBERON_8600026) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [chorionic villous tree](http://purl.obolibrary.org/obo/UBERON_8600026) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### ciliary processes `http://purl.obolibrary.org/obo/UBERON_0010427` +#### Removed +- [ciliary processes](http://purl.obolibrary.org/obo/UBERON_0010427) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-r.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ciliary processes](http://purl.obolibrary.org/obo/UBERON_0010427) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-r.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ciliary processes](http://purl.obolibrary.org/obo/UBERON_0010427) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-l.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ciliary processes](http://purl.obolibrary.org/obo/UBERON_0010427) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-l.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [ciliary processes](http://purl.obolibrary.org/obo/UBERON_0010427) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.0/assets/VH_M_Eye_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ciliary processes](http://purl.obolibrary.org/obo/UBERON_0010427) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.2/assets/3d-vh-f-eye-r.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ciliary processes](http://purl.obolibrary.org/obo/UBERON_0010427) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.2/assets/3d-vh-m-eye-r.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ciliary processes](http://purl.obolibrary.org/obo/UBERON_0010427) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.1/assets/VH_F_Eye_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ciliary processes](http://purl.obolibrary.org/obo/UBERON_0010427) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.0/assets/VH_F_Eye_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ciliary processes](http://purl.obolibrary.org/obo/UBERON_0010427) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.1/assets/VH_M_Eye_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ciliary processes](http://purl.obolibrary.org/obo/UBERON_0010427) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.0/assets/VH_M_Eye_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ciliary processes](http://purl.obolibrary.org/obo/UBERON_0010427) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.1/assets/VH_F_Eye_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ciliary processes](http://purl.obolibrary.org/obo/UBERON_0010427) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.2/assets/3d-vh-f-eye-l.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ciliary processes](http://purl.obolibrary.org/obo/UBERON_0010427) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.1/assets/VH_M_Eye_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ciliary processes](http://purl.obolibrary.org/obo/UBERON_0010427) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.2/assets/3d-vh-m-eye-l.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ciliary processes](http://purl.obolibrary.org/obo/UBERON_0010427) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.0/assets/VH_F_Eye_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### circumflex branch of left coronary artery `http://purl.obolibrary.org/obo/UBERON_0035422` +#### Removed +- [circumflex branch of left coronary artery](http://purl.obolibrary.org/obo/UBERON_0035422) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [circumflex branch of left coronary artery](http://purl.obolibrary.org/obo/UBERON_0035422) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [circumflex branch of left coronary artery](http://purl.obolibrary.org/obo/UBERON_0035422) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [circumflex branch of left coronary artery](http://purl.obolibrary.org/obo/UBERON_0035422) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### coccyx `http://purl.obolibrary.org/obo/UBERON_0001350` +#### Removed +- [coccyx](http://purl.obolibrary.org/obo/UBERON_0001350) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [coccyx](http://purl.obolibrary.org/obo/UBERON_0001350) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [coccyx](http://purl.obolibrary.org/obo/UBERON_0001350) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.2/assets/VH_F_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [coccyx](http://purl.obolibrary.org/obo/UBERON_0001350) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.1/assets/VH_M_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [coccyx](http://purl.obolibrary.org/obo/UBERON_0001350) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.0/assets/VH_F_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [coccyx](http://purl.obolibrary.org/obo/UBERON_0001350) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.2/assets/VH_M_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [coccyx](http://purl.obolibrary.org/obo/UBERON_0001350) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.0/assets/VH_M_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [coccyx](http://purl.obolibrary.org/obo/UBERON_0001350) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.1/assets/VH_F_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### colic artery `http://purl.obolibrary.org/obo/UBERON_0035548` +#### Removed +- [colic artery](http://purl.obolibrary.org/obo/UBERON_0035548) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [colic artery](http://purl.obolibrary.org/obo/UBERON_0035548) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [colic artery](http://purl.obolibrary.org/obo/UBERON_0035548) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [colic artery](http://purl.obolibrary.org/obo/UBERON_0035548) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [colic artery](http://purl.obolibrary.org/obo/UBERON_0035548) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [colic artery](http://purl.obolibrary.org/obo/UBERON_0035548) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### common hepatic artery `http://purl.obolibrary.org/obo/UBERON_0005436` +#### Removed +- [common hepatic artery](http://purl.obolibrary.org/obo/UBERON_0005436) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [common hepatic artery](http://purl.obolibrary.org/obo/UBERON_0005436) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [common hepatic artery](http://purl.obolibrary.org/obo/UBERON_0005436) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [common hepatic artery](http://purl.obolibrary.org/obo/UBERON_0005436) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [common hepatic artery](http://purl.obolibrary.org/obo/UBERON_0005436) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [common hepatic artery](http://purl.obolibrary.org/obo/UBERON_0005436) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### common iliac vein `http://purl.obolibrary.org/obo/UBERON_0001139` +#### Removed +- [common iliac vein](http://purl.obolibrary.org/obo/UBERON_0001139) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [common iliac vein](http://purl.obolibrary.org/obo/UBERON_0001139) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [common iliac vein](http://purl.obolibrary.org/obo/UBERON_0001139) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [common iliac vein](http://purl.obolibrary.org/obo/UBERON_0001139) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [common iliac vein](http://purl.obolibrary.org/obo/UBERON_0001139) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [common iliac vein](http://purl.obolibrary.org/obo/UBERON_0001139) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [common iliac vein](http://purl.obolibrary.org/obo/UBERON_0001139) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### common_anatomy `http://purl.obolibrary.org/obo/uberon/core#common_anatomy` + +#### Added +- [common_anatomy](http://purl.obolibrary.org/obo/uberon/core#common_anatomy) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### communicating branch of spinal nerve `http://purl.obolibrary.org/obo/UBERON_0017642` + +#### Added +- [communicating branch of spinal nerve](http://purl.obolibrary.org/obo/UBERON_0017642) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [communicating branch of spinal nerve](http://purl.obolibrary.org/obo/UBERON_0017642) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### compact bone tissue `http://purl.obolibrary.org/obo/UBERON_0001439` +#### Removed +- [compact bone tissue](http://purl.obolibrary.org/obo/UBERON_0001439) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [compact bone tissue](http://purl.obolibrary.org/obo/UBERON_0001439) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [compact bone tissue](http://purl.obolibrary.org/obo/UBERON_0001439) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.1/assets/VH_M_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [compact bone tissue](http://purl.obolibrary.org/obo/UBERON_0001439) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.0/assets/VH_F_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [compact bone tissue](http://purl.obolibrary.org/obo/UBERON_0001439) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.2/assets/VH_M_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [compact bone tissue](http://purl.obolibrary.org/obo/UBERON_0001439) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.1/assets/VH_F_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [compact bone tissue](http://purl.obolibrary.org/obo/UBERON_0001439) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.2/assets/VH_F_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [compact bone tissue](http://purl.obolibrary.org/obo/UBERON_0001439) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.0/assets/VH_M_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### corniculate cartilage `http://purl.obolibrary.org/obo/UBERON_0001741` +#### Removed +- [corniculate cartilage](http://purl.obolibrary.org/obo/UBERON_0001741) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-larynx.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [corniculate cartilage](http://purl.obolibrary.org/obo/UBERON_0001741) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-larynx.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [corniculate cartilage](http://purl.obolibrary.org/obo/UBERON_0001741) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.0/assets/3d-vh-f-larynx.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [corniculate cartilage](http://purl.obolibrary.org/obo/UBERON_0001741) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.0/assets/3d-vh-m-larynx.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### coronary ligament of liver `http://purl.obolibrary.org/obo/UBERON_0013138` +#### Removed +- [coronary ligament of liver](http://purl.obolibrary.org/obo/UBERON_0013138) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [coronary ligament of liver](http://purl.obolibrary.org/obo/UBERON_0013138) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [coronary ligament of liver](http://purl.obolibrary.org/obo/UBERON_0013138) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [coronary ligament of liver](http://purl.obolibrary.org/obo/UBERON_0013138) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [coronary ligament of liver](http://purl.obolibrary.org/obo/UBERON_0013138) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [coronary ligament of liver](http://purl.obolibrary.org/obo/UBERON_0013138) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### coronary sinus `http://purl.obolibrary.org/obo/UBERON_0005438` +#### Removed +- [coronary sinus](http://purl.obolibrary.org/obo/UBERON_0005438) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [coronary sinus](http://purl.obolibrary.org/obo/UBERON_0005438) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [coronary sinus](http://purl.obolibrary.org/obo/UBERON_0005438) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [coronary sinus](http://purl.obolibrary.org/obo/UBERON_0005438) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [coronary sinus](http://purl.obolibrary.org/obo/UBERON_0005438) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [coronary sinus](http://purl.obolibrary.org/obo/UBERON_0005438) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [coronary sinus](http://purl.obolibrary.org/obo/UBERON_0005438) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [coronary sinus](http://purl.obolibrary.org/obo/UBERON_0005438) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### corpus callosum `http://purl.obolibrary.org/obo/UBERON_0002336` +#### Removed +- [corpus callosum](http://purl.obolibrary.org/obo/UBERON_0002336) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [corpus callosum](http://purl.obolibrary.org/obo/UBERON_0002336) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [corpus callosum](http://purl.obolibrary.org/obo/UBERON_0002336) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [corpus callosum](http://purl.obolibrary.org/obo/UBERON_0002336) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [corpus callosum](http://purl.obolibrary.org/obo/UBERON_0002336) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [corpus callosum](http://purl.obolibrary.org/obo/UBERON_0002336) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [corpus callosum](http://purl.obolibrary.org/obo/UBERON_0002336) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [corpus callosum](http://purl.obolibrary.org/obo/UBERON_0002336) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### cortex of kidney `http://purl.obolibrary.org/obo/UBERON_0001225` +#### Removed +- [cortex of kidney](http://purl.obolibrary.org/obo/UBERON_0001225) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cortex of kidney](http://purl.obolibrary.org/obo/UBERON_0001225) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cortex of kidney](http://purl.obolibrary.org/obo/UBERON_0001225) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cortex of kidney](http://purl.obolibrary.org/obo/UBERON_0001225) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [cortex of kidney](http://purl.obolibrary.org/obo/UBERON_0001225) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cortex of kidney](http://purl.obolibrary.org/obo/UBERON_0001225) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cortex of kidney](http://purl.obolibrary.org/obo/UBERON_0001225) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cortex of kidney](http://purl.obolibrary.org/obo/UBERON_0001225) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cortex of kidney](http://purl.obolibrary.org/obo/UBERON_0001225) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.2/assets/VH_F_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cortex of kidney](http://purl.obolibrary.org/obo/UBERON_0001225) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cortex of kidney](http://purl.obolibrary.org/obo/UBERON_0001225) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cortex of kidney](http://purl.obolibrary.org/obo/UBERON_0001225) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.2/assets/VH_F_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cortex of kidney](http://purl.obolibrary.org/obo/UBERON_0001225) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cortex of kidney](http://purl.obolibrary.org/obo/UBERON_0001225) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cortex of kidney](http://purl.obolibrary.org/obo/UBERON_0001225) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cortex of kidney](http://purl.obolibrary.org/obo/UBERON_0001225) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### cranial nerve `http://purl.obolibrary.org/obo/UBERON_0001785` +#### Removed +- [cranial nerve](http://purl.obolibrary.org/obo/UBERON_0001785) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HBA:9299" + + + +### crico-arytenoid muscle `http://purl.obolibrary.org/obo/UBERON_0010932` + +#### Added +- [crico-arytenoid muscle](http://purl.obolibrary.org/obo/UBERON_0010932) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [crico-arytenoid muscle](http://purl.obolibrary.org/obo/UBERON_0010932) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### cricoid cartilage `http://purl.obolibrary.org/obo/UBERON_0002375` +#### Removed +- [cricoid cartilage](http://purl.obolibrary.org/obo/UBERON_0002375) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-larynx.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cricoid cartilage](http://purl.obolibrary.org/obo/UBERON_0002375) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-larynx.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [cricoid cartilage](http://purl.obolibrary.org/obo/UBERON_0002375) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.0/assets/3d-vh-m-larynx.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cricoid cartilage](http://purl.obolibrary.org/obo/UBERON_0002375) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.0/assets/3d-vh-f-larynx.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### cumbo `http://purl.obolibrary.org/obo/uberon/core#cumbo` + +#### Added +- [cumbo](http://purl.obolibrary.org/obo/uberon/core#cumbo) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### cuneus cortex `http://purl.obolibrary.org/obo/UBERON_0006092` +#### Removed +- [cuneus cortex](http://purl.obolibrary.org/obo/UBERON_0006092) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cuneus cortex](http://purl.obolibrary.org/obo/UBERON_0006092) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [cuneus cortex](http://purl.obolibrary.org/obo/UBERON_0006092) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cuneus cortex](http://purl.obolibrary.org/obo/UBERON_0006092) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cuneus cortex](http://purl.obolibrary.org/obo/UBERON_0006092) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cuneus cortex](http://purl.obolibrary.org/obo/UBERON_0006092) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cuneus cortex](http://purl.obolibrary.org/obo/UBERON_0006092) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cuneus cortex](http://purl.obolibrary.org/obo/UBERON_0006092) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### cyclostome_subset `http://purl.obolibrary.org/obo/uberon/core#cyclostome_subset` + +#### Added +- [cyclostome_subset](http://purl.obolibrary.org/obo/uberon/core#cyclostome_subset) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### cystic artery `http://purl.obolibrary.org/obo/UBERON_0039222` +#### Removed +- [cystic artery](http://purl.obolibrary.org/obo/UBERON_0039222) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cystic artery](http://purl.obolibrary.org/obo/UBERON_0039222) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [cystic artery](http://purl.obolibrary.org/obo/UBERON_0039222) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cystic artery](http://purl.obolibrary.org/obo/UBERON_0039222) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cystic artery](http://purl.obolibrary.org/obo/UBERON_0039222) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cystic artery](http://purl.obolibrary.org/obo/UBERON_0039222) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### cystic vein `http://purl.obolibrary.org/obo/UBERON_0035392` +#### Removed +- [cystic vein](http://purl.obolibrary.org/obo/UBERON_0035392) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cystic vein](http://purl.obolibrary.org/obo/UBERON_0035392) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [cystic vein](http://purl.obolibrary.org/obo/UBERON_0035392) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cystic vein](http://purl.obolibrary.org/obo/UBERON_0035392) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [cystic vein](http://purl.obolibrary.org/obo/UBERON_0035392) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### defined_by_cytoarchitecture `http://purl.obolibrary.org/obo/uberon/core#defined_by_cytoarchitecture` + +#### Added +- [defined_by_cytoarchitecture](http://purl.obolibrary.org/obo/uberon/core#defined_by_cytoarchitecture) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### defined_by_ordinal_series `http://purl.obolibrary.org/obo/uberon/core#defined_by_ordinal_series` + +#### Added +- [defined_by_ordinal_series](http://purl.obolibrary.org/obo/uberon/core#defined_by_ordinal_series) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### descending aorta `http://purl.obolibrary.org/obo/UBERON_0001514` +#### Removed +- [descending aorta](http://purl.obolibrary.org/obo/UBERON_0001514) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [descending aorta](http://purl.obolibrary.org/obo/UBERON_0001514) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [descending aorta](http://purl.obolibrary.org/obo/UBERON_0001514) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [descending aorta](http://purl.obolibrary.org/obo/UBERON_0001514) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [descending aorta](http://purl.obolibrary.org/obo/UBERON_0001514) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [descending aorta](http://purl.obolibrary.org/obo/UBERON_0001514) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [descending aorta](http://purl.obolibrary.org/obo/UBERON_0001514) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [descending aorta](http://purl.obolibrary.org/obo/UBERON_0001514) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### descending colon `http://purl.obolibrary.org/obo/UBERON_0001158` +#### Removed +- [descending colon](http://purl.obolibrary.org/obo/UBERON_0001158) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [descending colon](http://purl.obolibrary.org/obo/UBERON_0001158) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [descending colon](http://purl.obolibrary.org/obo/UBERON_0001158) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [descending colon](http://purl.obolibrary.org/obo/UBERON_0001158) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [descending colon](http://purl.obolibrary.org/obo/UBERON_0001158) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [descending colon](http://purl.obolibrary.org/obo/UBERON_0001158) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [descending colon](http://purl.obolibrary.org/obo/UBERON_0001158) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [descending colon](http://purl.obolibrary.org/obo/UBERON_0001158) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### developmental term `http://purl.obolibrary.org/obo/uberon/core#DEVELOPMENTAL` + +#### Added +- [developmental term](http://purl.obolibrary.org/obo/uberon/core#DEVELOPMENTAL) SubPropertyOf: [SynonymTypeProperty](http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty) + + +### developmental_classification `http://purl.obolibrary.org/obo/uberon/core#developmental_classification` + +#### Added +- [developmental_classification](http://purl.obolibrary.org/obo/uberon/core#developmental_classification) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### distally connected to `http://purl.obolibrary.org/obo/uberon/core#distally_connected_to` + +#### Added +- [distally connected to](http://purl.obolibrary.org/obo/uberon/core#distally_connected_to) InverseOf [proximally connected to](http://purl.obolibrary.org/obo/uberon/core#proximally_connected_to) + + +### dorsal ramus of spinal nerve `http://purl.obolibrary.org/obo/UBERON_0006839` + +#### Added +- [dorsal ramus of spinal nerve](http://purl.obolibrary.org/obo/UBERON_0006839) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [dorsal ramus of spinal nerve](http://purl.obolibrary.org/obo/UBERON_0006839) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### dubious_grouping `http://purl.obolibrary.org/obo/uberon/core#dubious_grouping` + +#### Added +- [dubious_grouping](http://purl.obolibrary.org/obo/uberon/core#dubious_grouping) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### duodenal ampulla `http://purl.obolibrary.org/obo/UBERON_0013644` +#### Removed +- [duodenal ampulla](http://purl.obolibrary.org/obo/UBERON_0013644) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Small_Intestine.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [duodenal ampulla](http://purl.obolibrary.org/obo/UBERON_0013644) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Small_Intestine.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [duodenal ampulla](http://purl.obolibrary.org/obo/UBERON_0013644) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-female/v1.1/assets/VH_F_Small_Intestine.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [duodenal ampulla](http://purl.obolibrary.org/obo/UBERON_0013644) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.0/assets/VH_M_Small_Intestine.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [duodenal ampulla](http://purl.obolibrary.org/obo/UBERON_0013644) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.1/assets/VH_M_Small_Intestine.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### duodenal papilla `http://purl.obolibrary.org/obo/UBERON_0004914` +#### Removed +- [duodenal papilla](http://purl.obolibrary.org/obo/UBERON_0004914) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Small_Intestine.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [duodenal papilla](http://purl.obolibrary.org/obo/UBERON_0004914) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.0/assets/VH_M_Small_Intestine.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [duodenal papilla](http://purl.obolibrary.org/obo/UBERON_0004914) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.1/assets/VH_M_Small_Intestine.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### duodenum `http://purl.obolibrary.org/obo/UBERON_0002114` +#### Removed +- [duodenum](http://purl.obolibrary.org/obo/UBERON_0002114) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Small_Intestine.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [duodenum](http://purl.obolibrary.org/obo/UBERON_0002114) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Small_Intestine.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [duodenum](http://purl.obolibrary.org/obo/UBERON_0002114) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.0/assets/VH_M_Small_Intestine.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [duodenum](http://purl.obolibrary.org/obo/UBERON_0002114) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.1/assets/VH_M_Small_Intestine.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [duodenum](http://purl.obolibrary.org/obo/UBERON_0002114) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-female/v1.1/assets/VH_F_Small_Intestine.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### early_development `http://purl.obolibrary.org/obo/uberon/core#early_development` + +#### Added +- [early_development](http://purl.obolibrary.org/obo/uberon/core#early_development) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### efferent lymphatic vessel `http://purl.obolibrary.org/obo/UBERON_0010397` +#### Removed +- [efferent lymphatic vessel](http://purl.obolibrary.org/obo/UBERON_0010397) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [efferent lymphatic vessel](http://purl.obolibrary.org/obo/UBERON_0010397) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [efferent lymphatic vessel](http://purl.obolibrary.org/obo/UBERON_0010397) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [efferent lymphatic vessel](http://purl.obolibrary.org/obo/UBERON_0010397) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [efferent lymphatic vessel](http://purl.obolibrary.org/obo/UBERON_0010397) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [efferent lymphatic vessel](http://purl.obolibrary.org/obo/UBERON_0010397) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.2/assets/NIH_M_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [efferent lymphatic vessel](http://purl.obolibrary.org/obo/UBERON_0010397) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [efferent lymphatic vessel](http://purl.obolibrary.org/obo/UBERON_0010397) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.2/assets/NIH_F_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [efferent lymphatic vessel](http://purl.obolibrary.org/obo/UBERON_0010397) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-left/v1.0/assets/NIH_F_Lymph_Node_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [efferent lymphatic vessel](http://purl.obolibrary.org/obo/UBERON_0010397) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-right/v1.0/assets/NIH_F_Lymph_Node_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### efo_slim `http://purl.obolibrary.org/obo/uberon/core#efo_slim` + +#### Added +- [efo_slim](http://purl.obolibrary.org/obo/uberon/core#efo_slim) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### ejaculatory duct `http://purl.obolibrary.org/obo/UBERON_0000999` +#### Removed +- [ejaculatory duct](http://purl.obolibrary.org/obo/UBERON_0000999) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [ejaculatory duct](http://purl.obolibrary.org/obo/UBERON_0000999) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ejaculatory duct](http://purl.obolibrary.org/obo/UBERON_0000999) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### emapa_ehdaa2 `http://purl.obolibrary.org/obo/uberon/core#emapa_ehdaa2` + +#### Added +- [emapa_ehdaa2](http://purl.obolibrary.org/obo/uberon/core#emapa_ehdaa2) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### endometrial lymphatic vessel `http://purl.obolibrary.org/obo/UBERON_8600042` + +#### Added +- [endometrial lymphatic vessel](http://purl.obolibrary.org/obo/UBERON_8600042) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [endometrial lymphatic vessel](http://purl.obolibrary.org/obo/UBERON_8600042) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### epibranchial ganglion `http://purl.obolibrary.org/obo/UBERON_0009127` + +#### Added +- [epibranchial ganglion](http://purl.obolibrary.org/obo/UBERON_0009127) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [epibranchial ganglion](http://purl.obolibrary.org/obo/UBERON_0009127) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### epiglottic cartilage `http://purl.obolibrary.org/obo/UBERON_0001742` +#### Removed +- [epiglottic cartilage](http://purl.obolibrary.org/obo/UBERON_0001742) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-larynx.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [epiglottic cartilage](http://purl.obolibrary.org/obo/UBERON_0001742) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-larynx.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [epiglottic cartilage](http://purl.obolibrary.org/obo/UBERON_0001742) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.0/assets/3d-vh-m-larynx.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [epiglottic cartilage](http://purl.obolibrary.org/obo/UBERON_0001742) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.0/assets/3d-vh-f-larynx.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### expert consultation and attribution required `http://purl.obolibrary.org/obo/uberon/core#PENDING_REVIEW` + +#### Added +- [expert consultation and attribution required](http://purl.obolibrary.org/obo/uberon/core#PENDING_REVIEW) SubPropertyOf: [SynonymTypeProperty](http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty) + + +### extends_fibers_into `http://purl.obolibrary.org/obo/uberon/core#extends_fibers_into` + +#### Added +- Symmetric: [extends_fibers_into](http://purl.obolibrary.org/obo/uberon/core#extends_fibers_into) + + +### external cervical os `http://purl.obolibrary.org/obo/UBERON_0013760` +#### Removed +- [external cervical os](http://purl.obolibrary.org/obo/UBERON_0013760) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Uterus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [external cervical os](http://purl.obolibrary.org/obo/UBERON_0013760) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.1/assets/VH_F_Uterus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [external cervical os](http://purl.obolibrary.org/obo/UBERON_0013760) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.0/assets/VH_F_Uterus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### external iliac vein `http://purl.obolibrary.org/obo/UBERON_0001316` +#### Removed +- [external iliac vein](http://purl.obolibrary.org/obo/UBERON_0001316) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [external iliac vein](http://purl.obolibrary.org/obo/UBERON_0001316) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [external iliac vein](http://purl.obolibrary.org/obo/UBERON_0001316) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### eye trabecular meshwork `http://purl.obolibrary.org/obo/UBERON_0005969` +#### Removed +- [eye trabecular meshwork](http://purl.obolibrary.org/obo/UBERON_0005969) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-r.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [eye trabecular meshwork](http://purl.obolibrary.org/obo/UBERON_0005969) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-r.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [eye trabecular meshwork](http://purl.obolibrary.org/obo/UBERON_0005969) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-l.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [eye trabecular meshwork](http://purl.obolibrary.org/obo/UBERON_0005969) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-l.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [eye trabecular meshwork](http://purl.obolibrary.org/obo/UBERON_0005969) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.0/assets/VH_F_Eye_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [eye trabecular meshwork](http://purl.obolibrary.org/obo/UBERON_0005969) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.0/assets/VH_M_Eye_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [eye trabecular meshwork](http://purl.obolibrary.org/obo/UBERON_0005969) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.1/assets/VH_M_Eye_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [eye trabecular meshwork](http://purl.obolibrary.org/obo/UBERON_0005969) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.1/assets/VH_M_Eye_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [eye trabecular meshwork](http://purl.obolibrary.org/obo/UBERON_0005969) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.0/assets/VH_M_Eye_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [eye trabecular meshwork](http://purl.obolibrary.org/obo/UBERON_0005969) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.1/assets/VH_F_Eye_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [eye trabecular meshwork](http://purl.obolibrary.org/obo/UBERON_0005969) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.2/assets/3d-vh-m-eye-r.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [eye trabecular meshwork](http://purl.obolibrary.org/obo/UBERON_0005969) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.1/assets/VH_F_Eye_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [eye trabecular meshwork](http://purl.obolibrary.org/obo/UBERON_0005969) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.0/assets/VH_F_Eye_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [eye trabecular meshwork](http://purl.obolibrary.org/obo/UBERON_0005969) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.2/assets/3d-vh-m-eye-l.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [eye trabecular meshwork](http://purl.obolibrary.org/obo/UBERON_0005969) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.2/assets/3d-vh-f-eye-l.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [eye trabecular meshwork](http://purl.obolibrary.org/obo/UBERON_0005969) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.2/assets/3d-vh-f-eye-r.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### falciform ligament `http://purl.obolibrary.org/obo/UBERON_0001247` +#### Removed +- [falciform ligament](http://purl.obolibrary.org/obo/UBERON_0001247) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [falciform ligament](http://purl.obolibrary.org/obo/UBERON_0001247) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [falciform ligament](http://purl.obolibrary.org/obo/UBERON_0001247) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [falciform ligament](http://purl.obolibrary.org/obo/UBERON_0001247) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [falciform ligament](http://purl.obolibrary.org/obo/UBERON_0001247) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [falciform ligament](http://purl.obolibrary.org/obo/UBERON_0001247) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### feed_aligned `http://purl.obolibrary.org/obo/uberon/core#feed_aligned` + +#### Added +- [feed_aligned](http://purl.obolibrary.org/obo/uberon/core#feed_aligned) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### femoral nerve `http://purl.obolibrary.org/obo/UBERON_0001267` + +#### Added +- [femoral nerve](http://purl.obolibrary.org/obo/UBERON_0001267) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [femoral nerve](http://purl.obolibrary.org/obo/UBERON_0001267) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### fornix of brain `http://purl.obolibrary.org/obo/UBERON_0000052` +#### Removed +- [fornix of brain](http://purl.obolibrary.org/obo/UBERON_0000052) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [fornix of brain](http://purl.obolibrary.org/obo/UBERON_0000052) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [fornix of brain](http://purl.obolibrary.org/obo/UBERON_0000052) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [fornix of brain](http://purl.obolibrary.org/obo/UBERON_0000052) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [fornix of brain](http://purl.obolibrary.org/obo/UBERON_0000052) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [fornix of brain](http://purl.obolibrary.org/obo/UBERON_0000052) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [fornix of brain](http://purl.obolibrary.org/obo/UBERON_0000052) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [fornix of brain](http://purl.obolibrary.org/obo/UBERON_0000052) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### fourth ventricle `http://purl.obolibrary.org/obo/UBERON_0002422` +#### Removed +- [fourth ventricle](http://purl.obolibrary.org/obo/UBERON_0002422) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [fourth ventricle](http://purl.obolibrary.org/obo/UBERON_0002422) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [fourth ventricle](http://purl.obolibrary.org/obo/UBERON_0002422) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [fourth ventricle](http://purl.obolibrary.org/obo/UBERON_0002422) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [fourth ventricle](http://purl.obolibrary.org/obo/UBERON_0002422) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [fourth ventricle](http://purl.obolibrary.org/obo/UBERON_0002422) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [fourth ventricle](http://purl.obolibrary.org/obo/UBERON_0002422) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [fourth ventricle](http://purl.obolibrary.org/obo/UBERON_0002422) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### frontal nerve (branch of ophthalmic) `http://purl.obolibrary.org/obo/UBERON_0000942` + +#### Added +- [frontal nerve (branch of ophthalmic)](http://purl.obolibrary.org/obo/UBERON_0000942) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [frontal nerve (branch of ophthalmic)](http://purl.obolibrary.org/obo/UBERON_0000942) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### frontal operculum `http://purl.obolibrary.org/obo/UBERON_0002947` +#### Removed +- [frontal operculum](http://purl.obolibrary.org/obo/UBERON_0002947) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [frontal operculum](http://purl.obolibrary.org/obo/UBERON_0002947) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [frontal operculum](http://purl.obolibrary.org/obo/UBERON_0002947) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [frontal operculum](http://purl.obolibrary.org/obo/UBERON_0002947) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [frontal operculum](http://purl.obolibrary.org/obo/UBERON_0002947) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [frontal operculum](http://purl.obolibrary.org/obo/UBERON_0002947) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [frontal operculum](http://purl.obolibrary.org/obo/UBERON_0002947) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [frontal operculum](http://purl.obolibrary.org/obo/UBERON_0002947) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### functional_classification `http://purl.obolibrary.org/obo/uberon/core#functional_classification` + +#### Added +- [functional_classification](http://purl.obolibrary.org/obo/uberon/core#functional_classification) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### fundus of urinary bladder `http://purl.obolibrary.org/obo/UBERON_0006082` +#### Removed +- [fundus of urinary bladder](http://purl.obolibrary.org/obo/UBERON_0006082) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Urinary_Bladder.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [fundus of urinary bladder](http://purl.obolibrary.org/obo/UBERON_0006082) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Urinary_Bladder.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [fundus of urinary bladder](http://purl.obolibrary.org/obo/UBERON_0006082) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.1/assets/VH_F_Urinary_Bladder.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [fundus of urinary bladder](http://purl.obolibrary.org/obo/UBERON_0006082) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.0/assets/VH_M_Urinary_Bladder.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [fundus of urinary bladder](http://purl.obolibrary.org/obo/UBERON_0006082) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.0/assets/VH_F_Urinary_Bladder.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [fundus of urinary bladder](http://purl.obolibrary.org/obo/UBERON_0006082) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.1/assets/VH_M_Urinary_Bladder.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### fused sacrum `http://purl.obolibrary.org/obo/UBERON_0003690` +#### Removed +- [fused sacrum](http://purl.obolibrary.org/obo/UBERON_0003690) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [fused sacrum](http://purl.obolibrary.org/obo/UBERON_0003690) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [fused sacrum](http://purl.obolibrary.org/obo/UBERON_0003690) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.2/assets/VH_M_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [fused sacrum](http://purl.obolibrary.org/obo/UBERON_0003690) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.0/assets/VH_F_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [fused sacrum](http://purl.obolibrary.org/obo/UBERON_0003690) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.2/assets/VH_F_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [fused sacrum](http://purl.obolibrary.org/obo/UBERON_0003690) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.0/assets/VH_M_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [fused sacrum](http://purl.obolibrary.org/obo/UBERON_0003690) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.1/assets/VH_M_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [fused sacrum](http://purl.obolibrary.org/obo/UBERON_0003690) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.1/assets/VH_F_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### geniculate ganglion `http://purl.obolibrary.org/obo/UBERON_0001700` + +#### Added +- [geniculate ganglion](http://purl.obolibrary.org/obo/UBERON_0001700) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [geniculate ganglion](http://purl.obolibrary.org/obo/UBERON_0001700) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### glossopharyngeal nerve `http://purl.obolibrary.org/obo/UBERON_0001649` +#### Removed +- [glossopharyngeal nerve](http://purl.obolibrary.org/obo/UBERON_0001649) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HBA:9334" + + + +### glossopharyngeal nerve root `http://purl.obolibrary.org/obo/UBERON_0019310` + +#### Added +- [glossopharyngeal nerve root](http://purl.obolibrary.org/obo/UBERON_0019310) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HBA:9334" + + +### great vein of heart `http://purl.obolibrary.org/obo/UBERON_0006958` +#### Removed +- [great vein of heart](http://purl.obolibrary.org/obo/UBERON_0006958) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [great vein of heart](http://purl.obolibrary.org/obo/UBERON_0006958) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [great vein of heart](http://purl.obolibrary.org/obo/UBERON_0006958) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [great vein of heart](http://purl.obolibrary.org/obo/UBERON_0006958) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [great vein of heart](http://purl.obolibrary.org/obo/UBERON_0006958) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [great vein of heart](http://purl.obolibrary.org/obo/UBERON_0006958) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [great vein of heart](http://purl.obolibrary.org/obo/UBERON_0006958) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [great vein of heart](http://purl.obolibrary.org/obo/UBERON_0006958) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### greater splanchnic nerve `http://purl.obolibrary.org/obo/UBERON_0018680` + +#### Added +- [greater splanchnic nerve](http://purl.obolibrary.org/obo/UBERON_0018680) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [greater splanchnic nerve](http://purl.obolibrary.org/obo/UBERON_0018680) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### grouping_class `http://purl.obolibrary.org/obo/uberon/core#grouping_class` + +#### Added +- [grouping_class](http://purl.obolibrary.org/obo/uberon/core#grouping_class) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### gyrus rectus `http://purl.obolibrary.org/obo/UBERON_0004671` +#### Removed +- [gyrus rectus](http://purl.obolibrary.org/obo/UBERON_0004671) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [gyrus rectus](http://purl.obolibrary.org/obo/UBERON_0004671) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [gyrus rectus](http://purl.obolibrary.org/obo/UBERON_0004671) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [gyrus rectus](http://purl.obolibrary.org/obo/UBERON_0004671) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [gyrus rectus](http://purl.obolibrary.org/obo/UBERON_0004671) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [gyrus rectus](http://purl.obolibrary.org/obo/UBERON_0004671) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [gyrus rectus](http://purl.obolibrary.org/obo/UBERON_0004671) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [gyrus rectus](http://purl.obolibrary.org/obo/UBERON_0004671) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### head of pancreas `http://purl.obolibrary.org/obo/UBERON_0001069` +#### Removed +- [head of pancreas](http://purl.obolibrary.org/obo/UBERON_0001069) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [head of pancreas](http://purl.obolibrary.org/obo/UBERON_0001069) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [head of pancreas](http://purl.obolibrary.org/obo/UBERON_0001069) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.1/assets/VH_M_Pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [head of pancreas](http://purl.obolibrary.org/obo/UBERON_0001069) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.2/assets/3d-vh-m-pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [head of pancreas](http://purl.obolibrary.org/obo/UBERON_0001069) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.1/assets/VH_F_Pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [head of pancreas](http://purl.obolibrary.org/obo/UBERON_0001069) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.0/assets/VH_M_Pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [head of pancreas](http://purl.obolibrary.org/obo/UBERON_0001069) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.2/assets/3d-vh-f-pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [head of pancreas](http://purl.obolibrary.org/obo/UBERON_0001069) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.0/assets/VH_F_Pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### heart `http://purl.obolibrary.org/obo/UBERON_0000948` +#### Removed +- [heart](http://purl.obolibrary.org/obo/UBERON_0000948) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [heart](http://purl.obolibrary.org/obo/UBERON_0000948) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [heart](http://purl.obolibrary.org/obo/UBERON_0000948) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [heart](http://purl.obolibrary.org/obo/UBERON_0000948) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [heart](http://purl.obolibrary.org/obo/UBERON_0000948) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [heart](http://purl.obolibrary.org/obo/UBERON_0000948) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [heart](http://purl.obolibrary.org/obo/UBERON_0000948) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [heart](http://purl.obolibrary.org/obo/UBERON_0000948) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [heart](http://purl.obolibrary.org/obo/UBERON_0000948) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### heart left ventricle `http://purl.obolibrary.org/obo/UBERON_0002084` +#### Removed +- [heart left ventricle](http://purl.obolibrary.org/obo/UBERON_0002084) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [heart left ventricle](http://purl.obolibrary.org/obo/UBERON_0002084) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [heart left ventricle](http://purl.obolibrary.org/obo/UBERON_0002084) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [heart left ventricle](http://purl.obolibrary.org/obo/UBERON_0002084) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [heart left ventricle](http://purl.obolibrary.org/obo/UBERON_0002084) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [heart left ventricle](http://purl.obolibrary.org/obo/UBERON_0002084) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [heart left ventricle](http://purl.obolibrary.org/obo/UBERON_0002084) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [heart left ventricle](http://purl.obolibrary.org/obo/UBERON_0002084) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### heart right ventricle `http://purl.obolibrary.org/obo/UBERON_0002080` +#### Removed +- [heart right ventricle](http://purl.obolibrary.org/obo/UBERON_0002080) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [heart right ventricle](http://purl.obolibrary.org/obo/UBERON_0002080) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [heart right ventricle](http://purl.obolibrary.org/obo/UBERON_0002080) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [heart right ventricle](http://purl.obolibrary.org/obo/UBERON_0002080) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [heart right ventricle](http://purl.obolibrary.org/obo/UBERON_0002080) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [heart right ventricle](http://purl.obolibrary.org/obo/UBERON_0002080) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [heart right ventricle](http://purl.obolibrary.org/obo/UBERON_0002080) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [heart right ventricle](http://purl.obolibrary.org/obo/UBERON_0002080) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### hepatic flexure of colon `http://purl.obolibrary.org/obo/UBERON_0022277` +#### Removed +- [hepatic flexure of colon](http://purl.obolibrary.org/obo/UBERON_0022277) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hepatic flexure of colon](http://purl.obolibrary.org/obo/UBERON_0022277) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [hepatic flexure of colon](http://purl.obolibrary.org/obo/UBERON_0022277) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hepatic flexure of colon](http://purl.obolibrary.org/obo/UBERON_0022277) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hepatic flexure of colon](http://purl.obolibrary.org/obo/UBERON_0022277) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hepatic flexure of colon](http://purl.obolibrary.org/obo/UBERON_0022277) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hepatic flexure of colon](http://purl.obolibrary.org/obo/UBERON_0022277) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hepatic flexure of colon](http://purl.obolibrary.org/obo/UBERON_0022277) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### hepatic portal vein `http://purl.obolibrary.org/obo/UBERON_0001639` +#### Removed +- [hepatic portal vein](http://purl.obolibrary.org/obo/UBERON_0001639) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hepatic portal vein](http://purl.obolibrary.org/obo/UBERON_0001639) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [hepatic portal vein](http://purl.obolibrary.org/obo/UBERON_0001639) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hepatic portal vein](http://purl.obolibrary.org/obo/UBERON_0001639) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hepatic portal vein](http://purl.obolibrary.org/obo/UBERON_0001639) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hepatic portal vein](http://purl.obolibrary.org/obo/UBERON_0001639) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hepatic portal vein](http://purl.obolibrary.org/obo/UBERON_0001639) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hepatic portal vein](http://purl.obolibrary.org/obo/UBERON_0001639) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### hepatoduodenal ligament `http://purl.obolibrary.org/obo/UBERON_0012472` +#### Removed +- [hepatoduodenal ligament](http://purl.obolibrary.org/obo/UBERON_0012472) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hepatoduodenal ligament](http://purl.obolibrary.org/obo/UBERON_0012472) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [hepatoduodenal ligament](http://purl.obolibrary.org/obo/UBERON_0012472) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hepatoduodenal ligament](http://purl.obolibrary.org/obo/UBERON_0012472) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hepatoduodenal ligament](http://purl.obolibrary.org/obo/UBERON_0012472) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hepatoduodenal ligament](http://purl.obolibrary.org/obo/UBERON_0012472) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### hilum of kidney `http://purl.obolibrary.org/obo/UBERON_0008716` +#### Removed +- [hilum of kidney](http://purl.obolibrary.org/obo/UBERON_0008716) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hilum of kidney](http://purl.obolibrary.org/obo/UBERON_0008716) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hilum of kidney](http://purl.obolibrary.org/obo/UBERON_0008716) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hilum of kidney](http://purl.obolibrary.org/obo/UBERON_0008716) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [hilum of kidney](http://purl.obolibrary.org/obo/UBERON_0008716) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.2/assets/VH_F_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hilum of kidney](http://purl.obolibrary.org/obo/UBERON_0008716) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hilum of kidney](http://purl.obolibrary.org/obo/UBERON_0008716) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hilum of kidney](http://purl.obolibrary.org/obo/UBERON_0008716) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hilum of kidney](http://purl.obolibrary.org/obo/UBERON_0008716) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hilum of kidney](http://purl.obolibrary.org/obo/UBERON_0008716) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hilum of kidney](http://purl.obolibrary.org/obo/UBERON_0008716) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.2/assets/VH_F_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hilum of kidney](http://purl.obolibrary.org/obo/UBERON_0008716) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hilum of kidney](http://purl.obolibrary.org/obo/UBERON_0008716) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hilum of kidney](http://purl.obolibrary.org/obo/UBERON_0008716) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hilum of kidney](http://purl.obolibrary.org/obo/UBERON_0008716) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hilum of kidney](http://purl.obolibrary.org/obo/UBERON_0008716) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### hilum of spleen `http://purl.obolibrary.org/obo/UBERON_0001248` +#### Removed +- [hilum of spleen](http://purl.obolibrary.org/obo/UBERON_0001248) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spleen.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hilum of spleen](http://purl.obolibrary.org/obo/UBERON_0001248) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spleen.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [hilum of spleen](http://purl.obolibrary.org/obo/UBERON_0001248) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-male/v1.0/assets/VH_M_Spleen.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hilum of spleen](http://purl.obolibrary.org/obo/UBERON_0001248) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-female/v1.0/assets/VH_F_Spleen.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hilum of spleen](http://purl.obolibrary.org/obo/UBERON_0001248) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-female/v1.1/assets/VH_F_Spleen.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hilum of spleen](http://purl.obolibrary.org/obo/UBERON_0001248) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-female/v1.2/assets/VH_F_Spleen.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hilum of spleen](http://purl.obolibrary.org/obo/UBERON_0001248) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-male/v1.2/assets/VH_M_Spleen.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hilum of spleen](http://purl.obolibrary.org/obo/UBERON_0001248) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-male/v1.1/assets/VH_M_Spleen.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### homology_grouping `http://purl.obolibrary.org/obo/uberon/core#homology_grouping` + +#### Added +- [homology_grouping](http://purl.obolibrary.org/obo/uberon/core#homology_grouping) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### human_reference_atlas `http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas` + +#### Added +- [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### hypogastric nerve `http://purl.obolibrary.org/obo/UBERON_0005303` + +#### Added +- [hypogastric nerve](http://purl.obolibrary.org/obo/UBERON_0005303) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [hypogastric nerve](http://purl.obolibrary.org/obo/UBERON_0005303) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### hypoglossal nerve `http://purl.obolibrary.org/obo/UBERON_0001650` +#### Removed +- [hypoglossal nerve](http://purl.obolibrary.org/obo/UBERON_0001650) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HBA:9343" + + + +### hypoglossal nerve root `http://purl.obolibrary.org/obo/UBERON_0004675` + +#### Added +- [hypoglossal nerve root](http://purl.obolibrary.org/obo/UBERON_0004675) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HBA:9343" + + +### hypothalamus `http://purl.obolibrary.org/obo/UBERON_0001898` +#### Removed +- [hypothalamus](http://purl.obolibrary.org/obo/UBERON_0001898) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hypothalamus](http://purl.obolibrary.org/obo/UBERON_0001898) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [hypothalamus](http://purl.obolibrary.org/obo/UBERON_0001898) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hypothalamus](http://purl.obolibrary.org/obo/UBERON_0001898) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.0/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hypothalamus](http://purl.obolibrary.org/obo/UBERON_0001898) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hypothalamus](http://purl.obolibrary.org/obo/UBERON_0001898) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hypothalamus](http://purl.obolibrary.org/obo/UBERON_0001898) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hypothalamus](http://purl.obolibrary.org/obo/UBERON_0001898) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hypothalamus](http://purl.obolibrary.org/obo/UBERON_0001898) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [hypothalamus](http://purl.obolibrary.org/obo/UBERON_0001898) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.0/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### ileocecal valve `http://purl.obolibrary.org/obo/UBERON_0000569` +#### Removed +- [ileocecal valve](http://purl.obolibrary.org/obo/UBERON_0000569) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ileocecal valve](http://purl.obolibrary.org/obo/UBERON_0000569) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [ileocecal valve](http://purl.obolibrary.org/obo/UBERON_0000569) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ileocecal valve](http://purl.obolibrary.org/obo/UBERON_0000569) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ileocecal valve](http://purl.obolibrary.org/obo/UBERON_0000569) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ileocecal valve](http://purl.obolibrary.org/obo/UBERON_0000569) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ileocecal valve](http://purl.obolibrary.org/obo/UBERON_0000569) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### ileocolic artery `http://purl.obolibrary.org/obo/UBERON_0001197` +#### Removed +- [ileocolic artery](http://purl.obolibrary.org/obo/UBERON_0001197) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ileocolic artery](http://purl.obolibrary.org/obo/UBERON_0001197) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + + +### ileocolic vein `http://purl.obolibrary.org/obo/UBERON_0001219` +#### Removed +- [ileocolic vein](http://purl.obolibrary.org/obo/UBERON_0001219) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ileocolic vein](http://purl.obolibrary.org/obo/UBERON_0001219) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [ileocolic vein](http://purl.obolibrary.org/obo/UBERON_0001219) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ileocolic vein](http://purl.obolibrary.org/obo/UBERON_0001219) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ileocolic vein](http://purl.obolibrary.org/obo/UBERON_0001219) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ileocolic vein](http://purl.obolibrary.org/obo/UBERON_0001219) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ileocolic vein](http://purl.obolibrary.org/obo/UBERON_0001219) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### ileum `http://purl.obolibrary.org/obo/UBERON_0002116` +#### Removed +- [ileum](http://purl.obolibrary.org/obo/UBERON_0002116) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Small_Intestine.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ileum](http://purl.obolibrary.org/obo/UBERON_0002116) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Small_Intestine.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [ileum](http://purl.obolibrary.org/obo/UBERON_0002116) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.0/assets/VH_M_Small_Intestine.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ileum](http://purl.obolibrary.org/obo/UBERON_0002116) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-female/v1.1/assets/VH_F_Small_Intestine.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ileum](http://purl.obolibrary.org/obo/UBERON_0002116) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.1/assets/VH_M_Small_Intestine.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### ilium `http://purl.obolibrary.org/obo/UBERON_0001273` +#### Removed +- [ilium](http://purl.obolibrary.org/obo/UBERON_0001273) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ilium](http://purl.obolibrary.org/obo/UBERON_0001273) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [ilium](http://purl.obolibrary.org/obo/UBERON_0001273) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.0/assets/VH_F_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ilium](http://purl.obolibrary.org/obo/UBERON_0001273) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.2/assets/VH_M_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ilium](http://purl.obolibrary.org/obo/UBERON_0001273) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.0/assets/VH_M_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ilium](http://purl.obolibrary.org/obo/UBERON_0001273) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.1/assets/VH_F_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ilium](http://purl.obolibrary.org/obo/UBERON_0001273) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.2/assets/VH_F_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ilium](http://purl.obolibrary.org/obo/UBERON_0001273) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.1/assets/VH_M_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### inconsistent_with_fma `http://purl.obolibrary.org/obo/uberon/core#inconsistent_with_fma` + +#### Added +- [inconsistent_with_fma](http://purl.obolibrary.org/obo/uberon/core#inconsistent_with_fma) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### indicates that a synonym is used in an inconsistent or confusing way, typically between species `http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT` + +#### Added +- [indicates that a synonym is used in an inconsistent or confusing way, typically between species](http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT) SubPropertyOf: [SynonymTypeProperty](http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty) + + +### indirectly_supplies `http://purl.obolibrary.org/obo/uberon/core#indirectly_supplies` + +#### Added +- Transitive: [indirectly_supplies](http://purl.obolibrary.org/obo/uberon/core#indirectly_supplies) + + +### inferior colliculus `http://purl.obolibrary.org/obo/UBERON_0001946` +#### Removed +- [inferior colliculus](http://purl.obolibrary.org/obo/UBERON_0001946) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [inferior colliculus](http://purl.obolibrary.org/obo/UBERON_0001946) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [inferior colliculus](http://purl.obolibrary.org/obo/UBERON_0001946) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [inferior colliculus](http://purl.obolibrary.org/obo/UBERON_0001946) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [inferior colliculus](http://purl.obolibrary.org/obo/UBERON_0001946) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [inferior colliculus](http://purl.obolibrary.org/obo/UBERON_0001946) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [inferior colliculus](http://purl.obolibrary.org/obo/UBERON_0001946) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [inferior colliculus](http://purl.obolibrary.org/obo/UBERON_0001946) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### inferior hypogastric nerve plexus `http://purl.obolibrary.org/obo/UBERON_0002014` + +#### Added +- [inferior hypogastric nerve plexus](http://purl.obolibrary.org/obo/UBERON_0002014) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [inferior hypogastric nerve plexus](http://purl.obolibrary.org/obo/UBERON_0002014) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### inferior mesenteric artery `http://purl.obolibrary.org/obo/UBERON_0001183` +#### Removed +- [inferior mesenteric artery](http://purl.obolibrary.org/obo/UBERON_0001183) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [inferior mesenteric artery](http://purl.obolibrary.org/obo/UBERON_0001183) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [inferior mesenteric artery](http://purl.obolibrary.org/obo/UBERON_0001183) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [inferior mesenteric artery](http://purl.obolibrary.org/obo/UBERON_0001183) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [inferior mesenteric artery](http://purl.obolibrary.org/obo/UBERON_0001183) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [inferior mesenteric artery](http://purl.obolibrary.org/obo/UBERON_0001183) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [inferior mesenteric artery](http://purl.obolibrary.org/obo/UBERON_0001183) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### inferior mesenteric nerve plexus `http://purl.obolibrary.org/obo/UBERON_0035770` + +#### Added +- [inferior mesenteric nerve plexus](http://purl.obolibrary.org/obo/UBERON_0035770) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [inferior mesenteric nerve plexus](http://purl.obolibrary.org/obo/UBERON_0035770) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### inferior mesenteric vein `http://purl.obolibrary.org/obo/UBERON_0001215` +#### Removed +- [inferior mesenteric vein](http://purl.obolibrary.org/obo/UBERON_0001215) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [inferior mesenteric vein](http://purl.obolibrary.org/obo/UBERON_0001215) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [inferior mesenteric vein](http://purl.obolibrary.org/obo/UBERON_0001215) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### inferior occipital gyrus `http://purl.obolibrary.org/obo/UBERON_0014608` +#### Removed +- [inferior occipital gyrus](http://purl.obolibrary.org/obo/UBERON_0014608) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [inferior occipital gyrus](http://purl.obolibrary.org/obo/UBERON_0014608) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [inferior occipital gyrus](http://purl.obolibrary.org/obo/UBERON_0014608) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [inferior occipital gyrus](http://purl.obolibrary.org/obo/UBERON_0014608) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [inferior occipital gyrus](http://purl.obolibrary.org/obo/UBERON_0014608) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [inferior occipital gyrus](http://purl.obolibrary.org/obo/UBERON_0014608) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [inferior occipital gyrus](http://purl.obolibrary.org/obo/UBERON_0014608) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [inferior occipital gyrus](http://purl.obolibrary.org/obo/UBERON_0014608) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### inferior temporal gyrus `http://purl.obolibrary.org/obo/UBERON_0002751` +#### Removed +- [inferior temporal gyrus](http://purl.obolibrary.org/obo/UBERON_0002751) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [inferior temporal gyrus](http://purl.obolibrary.org/obo/UBERON_0002751) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [inferior temporal gyrus](http://purl.obolibrary.org/obo/UBERON_0002751) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [inferior temporal gyrus](http://purl.obolibrary.org/obo/UBERON_0002751) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [inferior temporal gyrus](http://purl.obolibrary.org/obo/UBERON_0002751) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [inferior temporal gyrus](http://purl.obolibrary.org/obo/UBERON_0002751) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [inferior temporal gyrus](http://purl.obolibrary.org/obo/UBERON_0002751) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [inferior temporal gyrus](http://purl.obolibrary.org/obo/UBERON_0002751) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### inferior vena cava `http://purl.obolibrary.org/obo/UBERON_0001072` +#### Removed +- [inferior vena cava](http://purl.obolibrary.org/obo/UBERON_0001072) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "inferior vena cava" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Venae_cavae" + +- [inferior vena cava](http://purl.obolibrary.org/obo/UBERON_0001072) [label](http://www.w3.org/2000/01/rdf-schema#label) "posterior vena cava" + +- [inferior vena cava](http://purl.obolibrary.org/obo/UBERON_0001072) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "posterior vena cava" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Venae_cavae" + +#### Added +- [inferior vena cava](http://purl.obolibrary.org/obo/UBERON_0001072) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "posterior vena cava" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:21154280" + +- [inferior vena cava](http://purl.obolibrary.org/obo/UBERON_0001072) [label](http://www.w3.org/2000/01/rdf-schema#label) "inferior vena cava" + + +### insect dorsal mesothorax `http://purl.obolibrary.org/obo/UBERON_6004579` +#### Removed +- [insect dorsal mesothorax](http://purl.obolibrary.org/obo/UBERON_6004579) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBbt:00004579" + - [mapping_justification](https://w3id.org/sssom/mapping_justification) [ManualMappingCuration](https://w3id.org/semapv/vocab/ManualMappingCuration) + + + +### intermediate orbital gyrus `http://purl.obolibrary.org/obo/UBERON_0002644` +#### Removed +- [intermediate orbital gyrus](http://purl.obolibrary.org/obo/UBERON_0002644) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [intermediate orbital gyrus](http://purl.obolibrary.org/obo/UBERON_0002644) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [intermediate orbital gyrus](http://purl.obolibrary.org/obo/UBERON_0002644) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [intermediate orbital gyrus](http://purl.obolibrary.org/obo/UBERON_0002644) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [intermediate orbital gyrus](http://purl.obolibrary.org/obo/UBERON_0002644) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [intermediate orbital gyrus](http://purl.obolibrary.org/obo/UBERON_0002644) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [intermediate orbital gyrus](http://purl.obolibrary.org/obo/UBERON_0002644) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [intermediate orbital gyrus](http://purl.obolibrary.org/obo/UBERON_0002644) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### internal carotid nerve plexus `http://purl.obolibrary.org/obo/UBERON_0002024` + +#### Added +- [internal carotid nerve plexus](http://purl.obolibrary.org/obo/UBERON_0002024) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [internal carotid nerve plexus](http://purl.obolibrary.org/obo/UBERON_0002024) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### internal cervical os `http://purl.obolibrary.org/obo/UBERON_0013759` +#### Removed +- [internal cervical os](http://purl.obolibrary.org/obo/UBERON_0013759) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Uterus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [internal cervical os](http://purl.obolibrary.org/obo/UBERON_0013759) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.0/assets/VH_F_Uterus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [internal cervical os](http://purl.obolibrary.org/obo/UBERON_0013759) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.1/assets/VH_F_Uterus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### internal iliac vein `http://purl.obolibrary.org/obo/UBERON_0001317` +#### Removed +- [internal iliac vein](http://purl.obolibrary.org/obo/UBERON_0001317) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [internal iliac vein](http://purl.obolibrary.org/obo/UBERON_0001317) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [internal iliac vein](http://purl.obolibrary.org/obo/UBERON_0001317) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [internal iliac vein](http://purl.obolibrary.org/obo/UBERON_0001317) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [internal iliac vein](http://purl.obolibrary.org/obo/UBERON_0001317) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [internal iliac vein](http://purl.obolibrary.org/obo/UBERON_0001317) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [internal iliac vein](http://purl.obolibrary.org/obo/UBERON_0001317) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### internal pudendal vein `http://purl.obolibrary.org/obo/UBERON_0018252` +#### Removed +- [internal pudendal vein](http://purl.obolibrary.org/obo/UBERON_0018252) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [internal pudendal vein](http://purl.obolibrary.org/obo/UBERON_0018252) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [internal pudendal vein](http://purl.obolibrary.org/obo/UBERON_0018252) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [internal pudendal vein](http://purl.obolibrary.org/obo/UBERON_0018252) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [internal pudendal vein](http://purl.obolibrary.org/obo/UBERON_0018252) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [internal pudendal vein](http://purl.obolibrary.org/obo/UBERON_0018252) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [internal pudendal vein](http://purl.obolibrary.org/obo/UBERON_0018252) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### interventricular septum `http://purl.obolibrary.org/obo/UBERON_0002094` +#### Removed +- [interventricular septum](http://purl.obolibrary.org/obo/UBERON_0002094) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [interventricular septum](http://purl.obolibrary.org/obo/UBERON_0002094) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [interventricular septum](http://purl.obolibrary.org/obo/UBERON_0002094) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [interventricular septum](http://purl.obolibrary.org/obo/UBERON_0002094) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [interventricular septum](http://purl.obolibrary.org/obo/UBERON_0002094) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [interventricular septum](http://purl.obolibrary.org/obo/UBERON_0002094) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [interventricular septum](http://purl.obolibrary.org/obo/UBERON_0002094) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [interventricular septum](http://purl.obolibrary.org/obo/UBERON_0002094) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### ischium `http://purl.obolibrary.org/obo/UBERON_0001274` +#### Removed +- [ischium](http://purl.obolibrary.org/obo/UBERON_0001274) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ischium](http://purl.obolibrary.org/obo/UBERON_0001274) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [ischium](http://purl.obolibrary.org/obo/UBERON_0001274) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.1/assets/VH_F_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ischium](http://purl.obolibrary.org/obo/UBERON_0001274) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.1/assets/VH_M_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ischium](http://purl.obolibrary.org/obo/UBERON_0001274) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.0/assets/VH_M_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ischium](http://purl.obolibrary.org/obo/UBERON_0001274) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.0/assets/VH_F_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ischium](http://purl.obolibrary.org/obo/UBERON_0001274) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.2/assets/VH_F_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ischium](http://purl.obolibrary.org/obo/UBERON_0001274) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.2/assets/VH_M_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### isthmus of cingulate gyrus `http://purl.obolibrary.org/obo/UBERON_0002738` +#### Removed +- [isthmus of cingulate gyrus](http://purl.obolibrary.org/obo/UBERON_0002738) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [isthmus of cingulate gyrus](http://purl.obolibrary.org/obo/UBERON_0002738) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [isthmus of cingulate gyrus](http://purl.obolibrary.org/obo/UBERON_0002738) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [isthmus of cingulate gyrus](http://purl.obolibrary.org/obo/UBERON_0002738) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [isthmus of cingulate gyrus](http://purl.obolibrary.org/obo/UBERON_0002738) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [isthmus of cingulate gyrus](http://purl.obolibrary.org/obo/UBERON_0002738) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [isthmus of cingulate gyrus](http://purl.obolibrary.org/obo/UBERON_0002738) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [isthmus of cingulate gyrus](http://purl.obolibrary.org/obo/UBERON_0002738) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### jejunum `http://purl.obolibrary.org/obo/UBERON_0002115` +#### Removed +- [jejunum](http://purl.obolibrary.org/obo/UBERON_0002115) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Small_Intestine.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [jejunum](http://purl.obolibrary.org/obo/UBERON_0002115) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Small_Intestine.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [jejunum](http://purl.obolibrary.org/obo/UBERON_0002115) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-female/v1.1/assets/VH_F_Small_Intestine.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [jejunum](http://purl.obolibrary.org/obo/UBERON_0002115) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.1/assets/VH_M_Small_Intestine.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [jejunum](http://purl.obolibrary.org/obo/UBERON_0002115) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.0/assets/VH_M_Small_Intestine.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### kidney calyx `http://purl.obolibrary.org/obo/UBERON_0006517` + +#### Added +- [kidney calyx](http://purl.obolibrary.org/obo/UBERON_0006517) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [kidney calyx](http://purl.obolibrary.org/obo/UBERON_0006517) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [kidney calyx](http://purl.obolibrary.org/obo/UBERON_0006517) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [kidney calyx](http://purl.obolibrary.org/obo/UBERON_0006517) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [kidney calyx](http://purl.obolibrary.org/obo/UBERON_0006517) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [kidney calyx](http://purl.obolibrary.org/obo/UBERON_0006517) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [kidney calyx](http://purl.obolibrary.org/obo/UBERON_0006517) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [kidney calyx](http://purl.obolibrary.org/obo/UBERON_0006517) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### kidney capsule `http://purl.obolibrary.org/obo/UBERON_0002015` +#### Removed +- [kidney capsule](http://purl.obolibrary.org/obo/UBERON_0002015) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [kidney capsule](http://purl.obolibrary.org/obo/UBERON_0002015) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [kidney capsule](http://purl.obolibrary.org/obo/UBERON_0002015) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [kidney capsule](http://purl.obolibrary.org/obo/UBERON_0002015) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [kidney capsule](http://purl.obolibrary.org/obo/UBERON_0002015) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [kidney capsule](http://purl.obolibrary.org/obo/UBERON_0002015) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [kidney capsule](http://purl.obolibrary.org/obo/UBERON_0002015) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [kidney capsule](http://purl.obolibrary.org/obo/UBERON_0002015) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [kidney capsule](http://purl.obolibrary.org/obo/UBERON_0002015) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [kidney capsule](http://purl.obolibrary.org/obo/UBERON_0002015) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [kidney capsule](http://purl.obolibrary.org/obo/UBERON_0002015) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [kidney capsule](http://purl.obolibrary.org/obo/UBERON_0002015) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.2/assets/VH_F_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [kidney capsule](http://purl.obolibrary.org/obo/UBERON_0002015) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [kidney capsule](http://purl.obolibrary.org/obo/UBERON_0002015) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [kidney capsule](http://purl.obolibrary.org/obo/UBERON_0002015) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [kidney capsule](http://purl.obolibrary.org/obo/UBERON_0002015) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.2/assets/VH_F_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### kidney loop of Henle long descending thin limb inner medulla `http://purl.obolibrary.org/obo/UBERON_8600037` + +#### Added +- [kidney loop of Henle long descending thin limb inner medulla](http://purl.obolibrary.org/obo/UBERON_8600037) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [kidney loop of Henle long descending thin limb inner medulla](http://purl.obolibrary.org/obo/UBERON_8600037) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### kidney loop of Henle long descending thin limb outer medulla `http://purl.obolibrary.org/obo/UBERON_8600036` + +#### Added +- [kidney loop of Henle long descending thin limb outer medulla](http://purl.obolibrary.org/obo/UBERON_8600036) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [kidney loop of Henle long descending thin limb outer medulla](http://purl.obolibrary.org/obo/UBERON_8600036) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### kidney pyramid `http://purl.obolibrary.org/obo/UBERON_0004200` +#### Removed +- [kidney pyramid](http://purl.obolibrary.org/obo/UBERON_0004200) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [kidney pyramid](http://purl.obolibrary.org/obo/UBERON_0004200) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [kidney pyramid](http://purl.obolibrary.org/obo/UBERON_0004200) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [kidney pyramid](http://purl.obolibrary.org/obo/UBERON_0004200) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [kidney pyramid](http://purl.obolibrary.org/obo/UBERON_0004200) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [kidney pyramid](http://purl.obolibrary.org/obo/UBERON_0004200) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [kidney pyramid](http://purl.obolibrary.org/obo/UBERON_0004200) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [kidney pyramid](http://purl.obolibrary.org/obo/UBERON_0004200) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [kidney pyramid](http://purl.obolibrary.org/obo/UBERON_0004200) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [kidney pyramid](http://purl.obolibrary.org/obo/UBERON_0004200) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [kidney pyramid](http://purl.obolibrary.org/obo/UBERON_0004200) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [kidney pyramid](http://purl.obolibrary.org/obo/UBERON_0004200) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [kidney pyramid](http://purl.obolibrary.org/obo/UBERON_0004200) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.2/assets/VH_F_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [kidney pyramid](http://purl.obolibrary.org/obo/UBERON_0004200) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [kidney pyramid](http://purl.obolibrary.org/obo/UBERON_0004200) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [kidney pyramid](http://purl.obolibrary.org/obo/UBERON_0004200) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.2/assets/VH_F_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### lacrimal bone `http://purl.obolibrary.org/obo/UBERON_0001680` + +#### Added +- [lacrimal bone](http://purl.obolibrary.org/obo/UBERON_0001680) [hasRelatedSynonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "ectethmoid" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "UBERON:3010146" + + +### lacrimal nerve `http://purl.obolibrary.org/obo/UBERON_0011096` + +#### Added +- [lacrimal nerve](http://purl.obolibrary.org/obo/UBERON_0011096) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [lacrimal nerve](http://purl.obolibrary.org/obo/UBERON_0011096) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### large intestine `http://purl.obolibrary.org/obo/UBERON_0000059` +#### Removed +- [large intestine](http://purl.obolibrary.org/obo/UBERON_0000059) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [large intestine](http://purl.obolibrary.org/obo/UBERON_0000059) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [large intestine](http://purl.obolibrary.org/obo/UBERON_0000059) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [large intestine](http://purl.obolibrary.org/obo/UBERON_0000059) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [large intestine](http://purl.obolibrary.org/obo/UBERON_0000059) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [large intestine](http://purl.obolibrary.org/obo/UBERON_0000059) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [large intestine](http://purl.obolibrary.org/obo/UBERON_0000059) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [large intestine](http://purl.obolibrary.org/obo/UBERON_0000059) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [large intestine](http://purl.obolibrary.org/obo/UBERON_0000059) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### laryngeal cartilage `http://purl.obolibrary.org/obo/UBERON_0001739` +#### Removed +- [laryngeal cartilage](http://purl.obolibrary.org/obo/UBERON_0001739) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-larynx.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [laryngeal cartilage](http://purl.obolibrary.org/obo/UBERON_0001739) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-larynx.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [laryngeal cartilage](http://purl.obolibrary.org/obo/UBERON_0001739) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.0/assets/3d-vh-m-larynx.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [laryngeal cartilage](http://purl.obolibrary.org/obo/UBERON_0001739) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.0/assets/3d-vh-f-larynx.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### larynx `http://purl.obolibrary.org/obo/UBERON_0001737` +#### Removed +- [larynx](http://purl.obolibrary.org/obo/UBERON_0001737) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-larynx.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [larynx](http://purl.obolibrary.org/obo/UBERON_0001737) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-larynx.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [larynx](http://purl.obolibrary.org/obo/UBERON_0001737) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.0/assets/3d-vh-m-larynx.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [larynx](http://purl.obolibrary.org/obo/UBERON_0001737) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.0/assets/3d-vh-f-larynx.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### lateral orbital gyrus `http://purl.obolibrary.org/obo/UBERON_0002564` +#### Removed +- [lateral orbital gyrus](http://purl.obolibrary.org/obo/UBERON_0002564) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lateral orbital gyrus](http://purl.obolibrary.org/obo/UBERON_0002564) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [lateral orbital gyrus](http://purl.obolibrary.org/obo/UBERON_0002564) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lateral orbital gyrus](http://purl.obolibrary.org/obo/UBERON_0002564) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lateral orbital gyrus](http://purl.obolibrary.org/obo/UBERON_0002564) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lateral orbital gyrus](http://purl.obolibrary.org/obo/UBERON_0002564) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lateral orbital gyrus](http://purl.obolibrary.org/obo/UBERON_0002564) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lateral orbital gyrus](http://purl.obolibrary.org/obo/UBERON_0002564) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### lateral tuberal nucleus `http://purl.obolibrary.org/obo/UBERON_0000435` + +#### Added +- [lateral tuberal nucleus](http://purl.obolibrary.org/obo/UBERON_0000435) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [lateral tuberal nucleus](http://purl.obolibrary.org/obo/UBERON_0000435) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### least splanchnic nerve `http://purl.obolibrary.org/obo/UBERON_0001964` + +#### Added +- [least splanchnic nerve](http://purl.obolibrary.org/obo/UBERON_0001964) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [least splanchnic nerve](http://purl.obolibrary.org/obo/UBERON_0001964) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### left cardiac atrium `http://purl.obolibrary.org/obo/UBERON_0002079` +#### Removed +- [left cardiac atrium](http://purl.obolibrary.org/obo/UBERON_0002079) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left cardiac atrium](http://purl.obolibrary.org/obo/UBERON_0002079) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [left cardiac atrium](http://purl.obolibrary.org/obo/UBERON_0002079) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left cardiac atrium](http://purl.obolibrary.org/obo/UBERON_0002079) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left cardiac atrium](http://purl.obolibrary.org/obo/UBERON_0002079) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left cardiac atrium](http://purl.obolibrary.org/obo/UBERON_0002079) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left cardiac atrium](http://purl.obolibrary.org/obo/UBERON_0002079) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left cardiac atrium](http://purl.obolibrary.org/obo/UBERON_0002079) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### left cerebral hemisphere `http://purl.obolibrary.org/obo/UBERON_0002812` +#### Removed +- [left cerebral hemisphere](http://purl.obolibrary.org/obo/UBERON_0002812) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left cerebral hemisphere](http://purl.obolibrary.org/obo/UBERON_0002812) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [left cerebral hemisphere](http://purl.obolibrary.org/obo/UBERON_0002812) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left cerebral hemisphere](http://purl.obolibrary.org/obo/UBERON_0002812) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left cerebral hemisphere](http://purl.obolibrary.org/obo/UBERON_0002812) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.0/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left cerebral hemisphere](http://purl.obolibrary.org/obo/UBERON_0002812) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left cerebral hemisphere](http://purl.obolibrary.org/obo/UBERON_0002812) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left cerebral hemisphere](http://purl.obolibrary.org/obo/UBERON_0002812) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left cerebral hemisphere](http://purl.obolibrary.org/obo/UBERON_0002812) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.0/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left cerebral hemisphere](http://purl.obolibrary.org/obo/UBERON_0002812) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### left common carotid artery plus branches `http://purl.obolibrary.org/obo/UBERON_0001536` +#### Removed +- [left common carotid artery plus branches](http://purl.obolibrary.org/obo/UBERON_0001536) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left common carotid artery plus branches](http://purl.obolibrary.org/obo/UBERON_0001536) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [left common carotid artery plus branches](http://purl.obolibrary.org/obo/UBERON_0001536) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left common carotid artery plus branches](http://purl.obolibrary.org/obo/UBERON_0001536) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left common carotid artery plus branches](http://purl.obolibrary.org/obo/UBERON_0001536) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left common carotid artery plus branches](http://purl.obolibrary.org/obo/UBERON_0001536) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left common carotid artery plus branches](http://purl.obolibrary.org/obo/UBERON_0001536) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left common carotid artery plus branches](http://purl.obolibrary.org/obo/UBERON_0001536) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### left coronary artery `http://purl.obolibrary.org/obo/UBERON_0001626` +#### Removed +- [left coronary artery](http://purl.obolibrary.org/obo/UBERON_0001626) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left coronary artery](http://purl.obolibrary.org/obo/UBERON_0001626) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [left coronary artery](http://purl.obolibrary.org/obo/UBERON_0001626) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left coronary artery](http://purl.obolibrary.org/obo/UBERON_0001626) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left coronary artery](http://purl.obolibrary.org/obo/UBERON_0001626) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left coronary artery](http://purl.obolibrary.org/obo/UBERON_0001626) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left coronary artery](http://purl.obolibrary.org/obo/UBERON_0001626) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left coronary artery](http://purl.obolibrary.org/obo/UBERON_0001626) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### left eye `http://purl.obolibrary.org/obo/UBERON_0004548` +#### Removed +- [left eye](http://purl.obolibrary.org/obo/UBERON_0004548) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-l.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left eye](http://purl.obolibrary.org/obo/UBERON_0004548) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-l.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [left eye](http://purl.obolibrary.org/obo/UBERON_0004548) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.2/assets/3d-vh-m-eye-l.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left eye](http://purl.obolibrary.org/obo/UBERON_0004548) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.0/assets/VH_F_Eye_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left eye](http://purl.obolibrary.org/obo/UBERON_0004548) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.1/assets/VH_M_Eye_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left eye](http://purl.obolibrary.org/obo/UBERON_0004548) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.0/assets/VH_M_Eye_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left eye](http://purl.obolibrary.org/obo/UBERON_0004548) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.1/assets/VH_F_Eye_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left eye](http://purl.obolibrary.org/obo/UBERON_0004548) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.2/assets/3d-vh-f-eye-l.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### left kidney `http://purl.obolibrary.org/obo/UBERON_0004538` +#### Removed +- [left kidney](http://purl.obolibrary.org/obo/UBERON_0004538) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left kidney](http://purl.obolibrary.org/obo/UBERON_0004538) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Kidney_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left kidney](http://purl.obolibrary.org/obo/UBERON_0004538) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [left kidney](http://purl.obolibrary.org/obo/UBERON_0004538) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.2/assets/VH_F_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left kidney](http://purl.obolibrary.org/obo/UBERON_0004538) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left kidney](http://purl.obolibrary.org/obo/UBERON_0004538) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left kidney](http://purl.obolibrary.org/obo/UBERON_0004538) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left kidney](http://purl.obolibrary.org/obo/UBERON_0004538) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left kidney](http://purl.obolibrary.org/obo/UBERON_0004538) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### left lobe of liver `http://purl.obolibrary.org/obo/UBERON_0001115` +#### Removed +- [left lobe of liver](http://purl.obolibrary.org/obo/UBERON_0001115) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left lobe of liver](http://purl.obolibrary.org/obo/UBERON_0001115) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [left lobe of liver](http://purl.obolibrary.org/obo/UBERON_0001115) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left lobe of liver](http://purl.obolibrary.org/obo/UBERON_0001115) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left lobe of liver](http://purl.obolibrary.org/obo/UBERON_0001115) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left lobe of liver](http://purl.obolibrary.org/obo/UBERON_0001115) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### left lung `http://purl.obolibrary.org/obo/UBERON_0002168` +#### Removed +- [left lung](http://purl.obolibrary.org/obo/UBERON_0002168) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left lung](http://purl.obolibrary.org/obo/UBERON_0002168) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [left lung](http://purl.obolibrary.org/obo/UBERON_0002168) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left lung](http://purl.obolibrary.org/obo/UBERON_0002168) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left lung](http://purl.obolibrary.org/obo/UBERON_0002168) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left lung](http://purl.obolibrary.org/obo/UBERON_0002168) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left lung](http://purl.obolibrary.org/obo/UBERON_0002168) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left lung](http://purl.obolibrary.org/obo/UBERON_0002168) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left lung](http://purl.obolibrary.org/obo/UBERON_0002168) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### left lung hilus `http://purl.obolibrary.org/obo/UBERON_0004887` +#### Removed +- [left lung hilus](http://purl.obolibrary.org/obo/UBERON_0004887) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left lung hilus](http://purl.obolibrary.org/obo/UBERON_0004887) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [left lung hilus](http://purl.obolibrary.org/obo/UBERON_0004887) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left lung hilus](http://purl.obolibrary.org/obo/UBERON_0004887) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left lung hilus](http://purl.obolibrary.org/obo/UBERON_0004887) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left lung hilus](http://purl.obolibrary.org/obo/UBERON_0004887) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left lung hilus](http://purl.obolibrary.org/obo/UBERON_0004887) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left lung hilus](http://purl.obolibrary.org/obo/UBERON_0004887) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left lung hilus](http://purl.obolibrary.org/obo/UBERON_0004887) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### left main bronchus `http://purl.obolibrary.org/obo/UBERON_0002178` +#### Removed +- [left main bronchus](http://purl.obolibrary.org/obo/UBERON_0002178) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-main-bronchus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left main bronchus](http://purl.obolibrary.org/obo/UBERON_0002178) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-main-bronchus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [left main bronchus](http://purl.obolibrary.org/obo/UBERON_0002178) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left main bronchus](http://purl.obolibrary.org/obo/UBERON_0002178) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/main-bronchus-female/v1.0/assets/3d-vh-f-main-bronchus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left main bronchus](http://purl.obolibrary.org/obo/UBERON_0002178) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left main bronchus](http://purl.obolibrary.org/obo/UBERON_0002178) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left main bronchus](http://purl.obolibrary.org/obo/UBERON_0002178) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left main bronchus](http://purl.obolibrary.org/obo/UBERON_0002178) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left main bronchus](http://purl.obolibrary.org/obo/UBERON_0002178) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/main-bronchus-male/v1.0/assets/3d-vh-m-main-bronchus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### left nipple `http://purl.obolibrary.org/obo/UBERON_0013772` +#### Removed +- [left nipple](http://purl.obolibrary.org/obo/UBERON_0013772) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-l.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [left nipple](http://purl.obolibrary.org/obo/UBERON_0013772) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-left/v1.0/assets/3d-vh-f-mammary-gland-l.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### left pulmonary artery `http://purl.obolibrary.org/obo/UBERON_0001652` +#### Removed +- [left pulmonary artery](http://purl.obolibrary.org/obo/UBERON_0001652) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left pulmonary artery](http://purl.obolibrary.org/obo/UBERON_0001652) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [left pulmonary artery](http://purl.obolibrary.org/obo/UBERON_0001652) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left pulmonary artery](http://purl.obolibrary.org/obo/UBERON_0001652) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left pulmonary artery](http://purl.obolibrary.org/obo/UBERON_0001652) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left pulmonary artery](http://purl.obolibrary.org/obo/UBERON_0001652) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left pulmonary artery](http://purl.obolibrary.org/obo/UBERON_0001652) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left pulmonary artery](http://purl.obolibrary.org/obo/UBERON_0001652) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### left pupil `http://purl.obolibrary.org/obo/UBERON_0010223` +#### Removed +- [left pupil](http://purl.obolibrary.org/obo/UBERON_0010223) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-l.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left pupil](http://purl.obolibrary.org/obo/UBERON_0010223) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-l.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [left pupil](http://purl.obolibrary.org/obo/UBERON_0010223) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.1/assets/VH_F_Eye_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left pupil](http://purl.obolibrary.org/obo/UBERON_0010223) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.0/assets/VH_F_Eye_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left pupil](http://purl.obolibrary.org/obo/UBERON_0010223) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.1/assets/VH_M_Eye_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left pupil](http://purl.obolibrary.org/obo/UBERON_0010223) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.0/assets/VH_M_Eye_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left pupil](http://purl.obolibrary.org/obo/UBERON_0010223) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.2/assets/3d-vh-m-eye-l.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left pupil](http://purl.obolibrary.org/obo/UBERON_0010223) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.2/assets/3d-vh-f-eye-l.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### left putamen `http://purl.obolibrary.org/obo/UBERON_0008884` +#### Removed +- [left putamen](http://purl.obolibrary.org/obo/UBERON_0008884) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left putamen](http://purl.obolibrary.org/obo/UBERON_0008884) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [left putamen](http://purl.obolibrary.org/obo/UBERON_0008884) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left putamen](http://purl.obolibrary.org/obo/UBERON_0008884) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left putamen](http://purl.obolibrary.org/obo/UBERON_0008884) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left putamen](http://purl.obolibrary.org/obo/UBERON_0008884) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left putamen](http://purl.obolibrary.org/obo/UBERON_0008884) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left putamen](http://purl.obolibrary.org/obo/UBERON_0008884) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### left renal artery `http://purl.obolibrary.org/obo/UBERON_0001186` +#### Removed +- [left renal artery](http://purl.obolibrary.org/obo/UBERON_0001186) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left renal artery](http://purl.obolibrary.org/obo/UBERON_0001186) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [left renal artery](http://purl.obolibrary.org/obo/UBERON_0001186) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left renal artery](http://purl.obolibrary.org/obo/UBERON_0001186) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left renal artery](http://purl.obolibrary.org/obo/UBERON_0001186) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left renal artery](http://purl.obolibrary.org/obo/UBERON_0001186) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left renal artery](http://purl.obolibrary.org/obo/UBERON_0001186) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### left renal vein `http://purl.obolibrary.org/obo/UBERON_0001142` +#### Removed +- [left renal vein](http://purl.obolibrary.org/obo/UBERON_0001142) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left renal vein](http://purl.obolibrary.org/obo/UBERON_0001142) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [left renal vein](http://purl.obolibrary.org/obo/UBERON_0001142) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left renal vein](http://purl.obolibrary.org/obo/UBERON_0001142) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left renal vein](http://purl.obolibrary.org/obo/UBERON_0001142) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left renal vein](http://purl.obolibrary.org/obo/UBERON_0001142) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left renal vein](http://purl.obolibrary.org/obo/UBERON_0001142) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### left subclavian artery `http://purl.obolibrary.org/obo/UBERON_0001584` +#### Removed +- [left subclavian artery](http://purl.obolibrary.org/obo/UBERON_0001584) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left subclavian artery](http://purl.obolibrary.org/obo/UBERON_0001584) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [left subclavian artery](http://purl.obolibrary.org/obo/UBERON_0001584) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left subclavian artery](http://purl.obolibrary.org/obo/UBERON_0001584) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left subclavian artery](http://purl.obolibrary.org/obo/UBERON_0001584) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left subclavian artery](http://purl.obolibrary.org/obo/UBERON_0001584) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left subclavian artery](http://purl.obolibrary.org/obo/UBERON_0001584) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left subclavian artery](http://purl.obolibrary.org/obo/UBERON_0001584) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### left thymus lobe `http://purl.obolibrary.org/obo/UBERON_0005457` +#### Removed +- [left thymus lobe](http://purl.obolibrary.org/obo/UBERON_0005457) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Thymus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left thymus lobe](http://purl.obolibrary.org/obo/UBERON_0005457) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Thymus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [left thymus lobe](http://purl.obolibrary.org/obo/UBERON_0005457) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.2/assets/VH_M_Thymus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left thymus lobe](http://purl.obolibrary.org/obo/UBERON_0005457) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.0/assets/VH_M_Thymus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left thymus lobe](http://purl.obolibrary.org/obo/UBERON_0005457) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.1/assets/VH_M_Thymus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left thymus lobe](http://purl.obolibrary.org/obo/UBERON_0005457) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.2/assets/VH_F_Thymus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left thymus lobe](http://purl.obolibrary.org/obo/UBERON_0005457) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.1/assets/VH_F_Thymus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left thymus lobe](http://purl.obolibrary.org/obo/UBERON_0005457) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.0/assets/VH_F_Thymus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### left ureter `http://purl.obolibrary.org/obo/UBERON_0001223` +#### Removed +- [left ureter](http://purl.obolibrary.org/obo/UBERON_0001223) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Ureter_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left ureter](http://purl.obolibrary.org/obo/UBERON_0001223) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Ureter_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [left ureter](http://purl.obolibrary.org/obo/UBERON_0001223) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left ureter](http://purl.obolibrary.org/obo/UBERON_0001223) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-female-left/v1.1/assets/VH_F_Ureter_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left ureter](http://purl.obolibrary.org/obo/UBERON_0001223) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-female-left/v1.0/assets/VH_F_Ureter_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left ureter](http://purl.obolibrary.org/obo/UBERON_0001223) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left ureter](http://purl.obolibrary.org/obo/UBERON_0001223) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-male-left/v1.1/assets/VH_M_Ureter_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left ureter](http://purl.obolibrary.org/obo/UBERON_0001223) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-male-left/v1.0/assets/VH_M_Ureter_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### left uterine tube `http://purl.obolibrary.org/obo/UBERON_0001303` +#### Removed +- [left uterine tube](http://purl.obolibrary.org/obo/UBERON_0001303) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Fallopian_Tube_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [left uterine tube](http://purl.obolibrary.org/obo/UBERON_0001303) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/fallopian-tube-female-left/v1.1/assets/VH_F_Fallopian_Tube_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [left uterine tube](http://purl.obolibrary.org/obo/UBERON_0001303) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/fallopian-tube-female-left/v1.0/assets/VH_F_Fallopian_Tube_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### lesser splanchnic nerve `http://purl.obolibrary.org/obo/UBERON_0018681` + +#### Added +- [lesser splanchnic nerve](http://purl.obolibrary.org/obo/UBERON_0018681) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [lesser splanchnic nerve](http://purl.obolibrary.org/obo/UBERON_0018681) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### ligamentum venosum `http://purl.obolibrary.org/obo/UBERON_0006587` +#### Removed +- [ligamentum venosum](http://purl.obolibrary.org/obo/UBERON_0006587) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ligamentum venosum](http://purl.obolibrary.org/obo/UBERON_0006587) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [ligamentum venosum](http://purl.obolibrary.org/obo/UBERON_0006587) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ligamentum venosum](http://purl.obolibrary.org/obo/UBERON_0006587) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ligamentum venosum](http://purl.obolibrary.org/obo/UBERON_0006587) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ligamentum venosum](http://purl.obolibrary.org/obo/UBERON_0006587) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### lingual gyrus `http://purl.obolibrary.org/obo/UBERON_0002943` +#### Removed +- [lingual gyrus](http://purl.obolibrary.org/obo/UBERON_0002943) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lingual gyrus](http://purl.obolibrary.org/obo/UBERON_0002943) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [lingual gyrus](http://purl.obolibrary.org/obo/UBERON_0002943) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lingual gyrus](http://purl.obolibrary.org/obo/UBERON_0002943) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lingual gyrus](http://purl.obolibrary.org/obo/UBERON_0002943) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lingual gyrus](http://purl.obolibrary.org/obo/UBERON_0002943) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lingual gyrus](http://purl.obolibrary.org/obo/UBERON_0002943) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lingual gyrus](http://purl.obolibrary.org/obo/UBERON_0002943) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### lingual nerve `http://purl.obolibrary.org/obo/UBERON_0003721` + +#### Added +- [lingual nerve](http://purl.obolibrary.org/obo/UBERON_0003721) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [lingual nerve](http://purl.obolibrary.org/obo/UBERON_0003721) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### liver `http://purl.obolibrary.org/obo/UBERON_0002107` +#### Removed +- [liver](http://purl.obolibrary.org/obo/UBERON_0002107) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [liver](http://purl.obolibrary.org/obo/UBERON_0002107) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [liver](http://purl.obolibrary.org/obo/UBERON_0002107) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [liver](http://purl.obolibrary.org/obo/UBERON_0002107) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [liver](http://purl.obolibrary.org/obo/UBERON_0002107) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [liver](http://purl.obolibrary.org/obo/UBERON_0002107) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### liver left lateral lobe `http://purl.obolibrary.org/obo/UBERON_0006727` +#### Removed +- [liver left lateral lobe](http://purl.obolibrary.org/obo/UBERON_0006727) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [liver left lateral lobe](http://purl.obolibrary.org/obo/UBERON_0006727) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [liver left lateral lobe](http://purl.obolibrary.org/obo/UBERON_0006727) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [liver left lateral lobe](http://purl.obolibrary.org/obo/UBERON_0006727) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [liver left lateral lobe](http://purl.obolibrary.org/obo/UBERON_0006727) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [liver left lateral lobe](http://purl.obolibrary.org/obo/UBERON_0006727) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### liver left medial lobe `http://purl.obolibrary.org/obo/UBERON_0006728` +#### Removed +- [liver left medial lobe](http://purl.obolibrary.org/obo/UBERON_0006728) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [liver left medial lobe](http://purl.obolibrary.org/obo/UBERON_0006728) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [liver left medial lobe](http://purl.obolibrary.org/obo/UBERON_0006728) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [liver left medial lobe](http://purl.obolibrary.org/obo/UBERON_0006728) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [liver left medial lobe](http://purl.obolibrary.org/obo/UBERON_0006728) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [liver left medial lobe](http://purl.obolibrary.org/obo/UBERON_0006728) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### lobar bronchus of left lung `http://purl.obolibrary.org/obo/UBERON_0003405` +#### Removed +- [lobar bronchus of left lung](http://purl.obolibrary.org/obo/UBERON_0003405) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lobar bronchus of left lung](http://purl.obolibrary.org/obo/UBERON_0003405) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [lobar bronchus of left lung](http://purl.obolibrary.org/obo/UBERON_0003405) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lobar bronchus of left lung](http://purl.obolibrary.org/obo/UBERON_0003405) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lobar bronchus of left lung](http://purl.obolibrary.org/obo/UBERON_0003405) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lobar bronchus of left lung](http://purl.obolibrary.org/obo/UBERON_0003405) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lobar bronchus of left lung](http://purl.obolibrary.org/obo/UBERON_0003405) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lobar bronchus of left lung](http://purl.obolibrary.org/obo/UBERON_0003405) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lobar bronchus of left lung](http://purl.obolibrary.org/obo/UBERON_0003405) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### lobar bronchus of left lung lower lobe `http://purl.obolibrary.org/obo/UBERON_0012066` +#### Removed +- [lobar bronchus of left lung lower lobe](http://purl.obolibrary.org/obo/UBERON_0012066) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lobar bronchus of left lung lower lobe](http://purl.obolibrary.org/obo/UBERON_0012066) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [lobar bronchus of left lung lower lobe](http://purl.obolibrary.org/obo/UBERON_0012066) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lobar bronchus of left lung lower lobe](http://purl.obolibrary.org/obo/UBERON_0012066) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lobar bronchus of left lung lower lobe](http://purl.obolibrary.org/obo/UBERON_0012066) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lobar bronchus of left lung lower lobe](http://purl.obolibrary.org/obo/UBERON_0012066) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lobar bronchus of left lung lower lobe](http://purl.obolibrary.org/obo/UBERON_0012066) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lobar bronchus of left lung lower lobe](http://purl.obolibrary.org/obo/UBERON_0012066) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lobar bronchus of left lung lower lobe](http://purl.obolibrary.org/obo/UBERON_0012066) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### lobar bronchus of left lung upper lobe `http://purl.obolibrary.org/obo/UBERON_0012065` +#### Removed +- [lobar bronchus of left lung upper lobe](http://purl.obolibrary.org/obo/UBERON_0012065) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lobar bronchus of left lung upper lobe](http://purl.obolibrary.org/obo/UBERON_0012065) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [lobar bronchus of left lung upper lobe](http://purl.obolibrary.org/obo/UBERON_0012065) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lobar bronchus of left lung upper lobe](http://purl.obolibrary.org/obo/UBERON_0012065) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lobar bronchus of left lung upper lobe](http://purl.obolibrary.org/obo/UBERON_0012065) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lobar bronchus of left lung upper lobe](http://purl.obolibrary.org/obo/UBERON_0012065) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lobar bronchus of left lung upper lobe](http://purl.obolibrary.org/obo/UBERON_0012065) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lobar bronchus of left lung upper lobe](http://purl.obolibrary.org/obo/UBERON_0012065) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lobar bronchus of left lung upper lobe](http://purl.obolibrary.org/obo/UBERON_0012065) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### lobar bronchus of right lung `http://purl.obolibrary.org/obo/UBERON_0003404` +#### Removed +- [lobar bronchus of right lung](http://purl.obolibrary.org/obo/UBERON_0003404) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lobar bronchus of right lung](http://purl.obolibrary.org/obo/UBERON_0003404) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [lobar bronchus of right lung](http://purl.obolibrary.org/obo/UBERON_0003404) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lobar bronchus of right lung](http://purl.obolibrary.org/obo/UBERON_0003404) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lobar bronchus of right lung](http://purl.obolibrary.org/obo/UBERON_0003404) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lobar bronchus of right lung](http://purl.obolibrary.org/obo/UBERON_0003404) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lobar bronchus of right lung](http://purl.obolibrary.org/obo/UBERON_0003404) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lobar bronchus of right lung](http://purl.obolibrary.org/obo/UBERON_0003404) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lobar bronchus of right lung](http://purl.obolibrary.org/obo/UBERON_0003404) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### location_grouping `http://purl.obolibrary.org/obo/uberon/core#location_grouping` + +#### Added +- [location_grouping](http://purl.obolibrary.org/obo/uberon/core#location_grouping) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### long ciliary nerve `http://purl.obolibrary.org/obo/UBERON_0022301` + +#### Added +- [long ciliary nerve](http://purl.obolibrary.org/obo/UBERON_0022301) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [long ciliary nerve](http://purl.obolibrary.org/obo/UBERON_0022301) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### lower lobe of left lung `http://purl.obolibrary.org/obo/UBERON_0008953` +#### Removed +- [lower lobe of left lung](http://purl.obolibrary.org/obo/UBERON_0008953) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lower lobe of left lung](http://purl.obolibrary.org/obo/UBERON_0008953) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [lower lobe of left lung](http://purl.obolibrary.org/obo/UBERON_0008953) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lower lobe of left lung](http://purl.obolibrary.org/obo/UBERON_0008953) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lower lobe of left lung](http://purl.obolibrary.org/obo/UBERON_0008953) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lower lobe of left lung](http://purl.obolibrary.org/obo/UBERON_0008953) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lower lobe of left lung](http://purl.obolibrary.org/obo/UBERON_0008953) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lower lobe of left lung](http://purl.obolibrary.org/obo/UBERON_0008953) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lower lobe of left lung](http://purl.obolibrary.org/obo/UBERON_0008953) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### lower lobe of right lung `http://purl.obolibrary.org/obo/UBERON_0002171` +#### Removed +- [lower lobe of right lung](http://purl.obolibrary.org/obo/UBERON_0002171) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lower lobe of right lung](http://purl.obolibrary.org/obo/UBERON_0002171) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [lower lobe of right lung](http://purl.obolibrary.org/obo/UBERON_0002171) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lower lobe of right lung](http://purl.obolibrary.org/obo/UBERON_0002171) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lower lobe of right lung](http://purl.obolibrary.org/obo/UBERON_0002171) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lower lobe of right lung](http://purl.obolibrary.org/obo/UBERON_0002171) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lower lobe of right lung](http://purl.obolibrary.org/obo/UBERON_0002171) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lower lobe of right lung](http://purl.obolibrary.org/obo/UBERON_0002171) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lower lobe of right lung](http://purl.obolibrary.org/obo/UBERON_0002171) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### lumbar nerve `http://purl.obolibrary.org/obo/UBERON_0009624` + +#### Added +- [lumbar nerve](http://purl.obolibrary.org/obo/UBERON_0009624) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [lumbar nerve](http://purl.obolibrary.org/obo/UBERON_0009624) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### lumbar splanchnic nerve `http://purl.obolibrary.org/obo/UBERON_0018683` + +#### Added +- [lumbar splanchnic nerve](http://purl.obolibrary.org/obo/UBERON_0018683) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [lumbar splanchnic nerve](http://purl.obolibrary.org/obo/UBERON_0018683) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### lung `http://purl.obolibrary.org/obo/UBERON_0002048` +#### Removed +- [lung](http://purl.obolibrary.org/obo/UBERON_0002048) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lung](http://purl.obolibrary.org/obo/UBERON_0002048) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [lung](http://purl.obolibrary.org/obo/UBERON_0002048) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lung](http://purl.obolibrary.org/obo/UBERON_0002048) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lung](http://purl.obolibrary.org/obo/UBERON_0002048) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lung](http://purl.obolibrary.org/obo/UBERON_0002048) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.0/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lung](http://purl.obolibrary.org/obo/UBERON_0002048) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lung](http://purl.obolibrary.org/obo/UBERON_0002048) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lung](http://purl.obolibrary.org/obo/UBERON_0002048) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lung](http://purl.obolibrary.org/obo/UBERON_0002048) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### lymph node `http://purl.obolibrary.org/obo/UBERON_0000029` + +#### Added +- [lymph node](http://purl.obolibrary.org/obo/UBERON_0000029) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lymph node](http://purl.obolibrary.org/obo/UBERON_0000029) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-left/v1.0/assets/NIH_F_Lymph_Node_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lymph node](http://purl.obolibrary.org/obo/UBERON_0000029) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lymph node](http://purl.obolibrary.org/obo/UBERON_0000029) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-right/v1.0/assets/NIH_F_Lymph_Node_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### lymph node T cell domain `http://purl.obolibrary.org/obo/UBERON_0010417` +#### Removed +- [lymph node T cell domain](http://purl.obolibrary.org/obo/UBERON_0010417) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lymph node T cell domain](http://purl.obolibrary.org/obo/UBERON_0010417) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [lymph node T cell domain](http://purl.obolibrary.org/obo/UBERON_0010417) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-right/v1.0/assets/NIH_F_Lymph_Node_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lymph node T cell domain](http://purl.obolibrary.org/obo/UBERON_0010417) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lymph node T cell domain](http://purl.obolibrary.org/obo/UBERON_0010417) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lymph node T cell domain](http://purl.obolibrary.org/obo/UBERON_0010417) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.2/assets/NIH_F_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lymph node T cell domain](http://purl.obolibrary.org/obo/UBERON_0010417) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lymph node T cell domain](http://purl.obolibrary.org/obo/UBERON_0010417) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.2/assets/NIH_M_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lymph node T cell domain](http://purl.obolibrary.org/obo/UBERON_0010417) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-left/v1.0/assets/NIH_F_Lymph_Node_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lymph node T cell domain](http://purl.obolibrary.org/obo/UBERON_0010417) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### lymph node follicle `http://purl.obolibrary.org/obo/UBERON_0010748` +#### Removed +- [lymph node follicle](http://purl.obolibrary.org/obo/UBERON_0010748) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lymph node follicle](http://purl.obolibrary.org/obo/UBERON_0010748) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [lymph node follicle](http://purl.obolibrary.org/obo/UBERON_0010748) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-right/v1.0/assets/NIH_F_Lymph_Node_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lymph node follicle](http://purl.obolibrary.org/obo/UBERON_0010748) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lymph node follicle](http://purl.obolibrary.org/obo/UBERON_0010748) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lymph node follicle](http://purl.obolibrary.org/obo/UBERON_0010748) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.2/assets/NIH_F_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lymph node follicle](http://purl.obolibrary.org/obo/UBERON_0010748) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-left/v1.0/assets/NIH_F_Lymph_Node_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lymph node follicle](http://purl.obolibrary.org/obo/UBERON_0010748) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lymph node follicle](http://purl.obolibrary.org/obo/UBERON_0010748) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lymph node follicle](http://purl.obolibrary.org/obo/UBERON_0010748) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.2/assets/NIH_M_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### lymph vasculature `http://purl.obolibrary.org/obo/UBERON_0004536` +#### Removed +- [lymph vasculature](http://purl.obolibrary.org/obo/UBERON_0004536) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lymph vasculature](http://purl.obolibrary.org/obo/UBERON_0004536) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [lymph vasculature](http://purl.obolibrary.org/obo/UBERON_0004536) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.2/assets/NIH_M_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [lymph vasculature](http://purl.obolibrary.org/obo/UBERON_0004536) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.2/assets/NIH_F_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### main bronchus `http://purl.obolibrary.org/obo/UBERON_0002182` +#### Removed +- [main bronchus](http://purl.obolibrary.org/obo/UBERON_0002182) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-main-bronchus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [main bronchus](http://purl.obolibrary.org/obo/UBERON_0002182) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-main-bronchus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [main bronchus](http://purl.obolibrary.org/obo/UBERON_0002182) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/main-bronchus-female/v1.0/assets/3d-vh-f-main-bronchus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [main bronchus](http://purl.obolibrary.org/obo/UBERON_0002182) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/main-bronchus-male/v1.0/assets/3d-vh-m-main-bronchus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### main lactiferous duct `http://purl.obolibrary.org/obo/UBERON_0015134` + +#### Added +- [main lactiferous duct](http://purl.obolibrary.org/obo/UBERON_0015134) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-right/v1.0/assets/3d-vh-f-mammary-gland-r.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [main lactiferous duct](http://purl.obolibrary.org/obo/UBERON_0015134) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-left/v1.0/assets/3d-vh-f-mammary-gland-l.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### major calyx `http://purl.obolibrary.org/obo/UBERON_0001226` + +#### Added +- [major calyx](http://purl.obolibrary.org/obo/UBERON_0001226) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [major calyx](http://purl.obolibrary.org/obo/UBERON_0001226) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [major calyx](http://purl.obolibrary.org/obo/UBERON_0001226) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [major calyx](http://purl.obolibrary.org/obo/UBERON_0001226) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [major calyx](http://purl.obolibrary.org/obo/UBERON_0001226) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [major calyx](http://purl.obolibrary.org/obo/UBERON_0001226) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [major calyx](http://purl.obolibrary.org/obo/UBERON_0001226) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [major calyx](http://purl.obolibrary.org/obo/UBERON_0001226) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### major_organ `http://purl.obolibrary.org/obo/uberon/core#major_organ` + +#### Added +- [major_organ](http://purl.obolibrary.org/obo/uberon/core#major_organ) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### male genital duct `http://purl.obolibrary.org/obo/UBERON_0006947` +#### Removed +- [male genital duct](http://purl.obolibrary.org/obo/UBERON_0006947) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + + +### male reproductive system `http://purl.obolibrary.org/obo/UBERON_0000079` +#### Removed +- [male reproductive system](http://purl.obolibrary.org/obo/UBERON_0000079) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [male reproductive system](http://purl.obolibrary.org/obo/UBERON_0000079) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### male urethra `http://purl.obolibrary.org/obo/UBERON_0001333` +#### Removed +- [male urethra](http://purl.obolibrary.org/obo/UBERON_0001333) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Urethra.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + + +### mammary lobe `http://purl.obolibrary.org/obo/UBERON_0018140` +#### Removed +- [mammary lobe](http://purl.obolibrary.org/obo/UBERON_0018140) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-r.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [mammary lobe](http://purl.obolibrary.org/obo/UBERON_0018140) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-l.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [mammary lobe](http://purl.obolibrary.org/obo/UBERON_0018140) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-left/v1.0/assets/3d-vh-f-mammary-gland-l.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [mammary lobe](http://purl.obolibrary.org/obo/UBERON_0018140) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-right/v1.0/assets/3d-vh-f-mammary-gland-r.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### medial orbital gyrus `http://purl.obolibrary.org/obo/UBERON_0002570` +#### Removed +- [medial orbital gyrus](http://purl.obolibrary.org/obo/UBERON_0002570) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [medial orbital gyrus](http://purl.obolibrary.org/obo/UBERON_0002570) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [medial orbital gyrus](http://purl.obolibrary.org/obo/UBERON_0002570) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [medial orbital gyrus](http://purl.obolibrary.org/obo/UBERON_0002570) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [medial orbital gyrus](http://purl.obolibrary.org/obo/UBERON_0002570) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [medial orbital gyrus](http://purl.obolibrary.org/obo/UBERON_0002570) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [medial orbital gyrus](http://purl.obolibrary.org/obo/UBERON_0002570) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [medial orbital gyrus](http://purl.obolibrary.org/obo/UBERON_0002570) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### median sacral vein `http://purl.obolibrary.org/obo/UBERON_0006687` +#### Removed +- [median sacral vein](http://purl.obolibrary.org/obo/UBERON_0006687) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [median sacral vein](http://purl.obolibrary.org/obo/UBERON_0006687) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [median sacral vein](http://purl.obolibrary.org/obo/UBERON_0006687) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [median sacral vein](http://purl.obolibrary.org/obo/UBERON_0006687) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [median sacral vein](http://purl.obolibrary.org/obo/UBERON_0006687) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [median sacral vein](http://purl.obolibrary.org/obo/UBERON_0006687) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [median sacral vein](http://purl.obolibrary.org/obo/UBERON_0006687) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### medulla of lymph node `http://purl.obolibrary.org/obo/UBERON_0002007` +#### Removed +- [medulla of lymph node](http://purl.obolibrary.org/obo/UBERON_0002007) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [medulla of lymph node](http://purl.obolibrary.org/obo/UBERON_0002007) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [medulla of lymph node](http://purl.obolibrary.org/obo/UBERON_0002007) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [medulla of lymph node](http://purl.obolibrary.org/obo/UBERON_0002007) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [medulla of lymph node](http://purl.obolibrary.org/obo/UBERON_0002007) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.2/assets/NIH_M_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [medulla of lymph node](http://purl.obolibrary.org/obo/UBERON_0002007) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [medulla of lymph node](http://purl.obolibrary.org/obo/UBERON_0002007) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [medulla of lymph node](http://purl.obolibrary.org/obo/UBERON_0002007) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-left/v1.0/assets/NIH_F_Lymph_Node_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [medulla of lymph node](http://purl.obolibrary.org/obo/UBERON_0002007) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-right/v1.0/assets/NIH_F_Lymph_Node_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [medulla of lymph node](http://purl.obolibrary.org/obo/UBERON_0002007) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.2/assets/NIH_F_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### meningeal branch of spinal nerve `http://purl.obolibrary.org/obo/UBERON_0017641` + +#### Added +- [meningeal branch of spinal nerve](http://purl.obolibrary.org/obo/UBERON_0017641) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [meningeal branch of spinal nerve](http://purl.obolibrary.org/obo/UBERON_0017641) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### mesenteric lymph node `http://purl.obolibrary.org/obo/UBERON_0002509` +#### Removed +- [mesenteric lymph node](http://purl.obolibrary.org/obo/UBERON_0002509) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [mesenteric lymph node](http://purl.obolibrary.org/obo/UBERON_0002509) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [mesenteric lymph node](http://purl.obolibrary.org/obo/UBERON_0002509) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [mesenteric lymph node](http://purl.obolibrary.org/obo/UBERON_0002509) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.2/assets/NIH_F_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [mesenteric lymph node](http://purl.obolibrary.org/obo/UBERON_0002509) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [mesenteric lymph node](http://purl.obolibrary.org/obo/UBERON_0002509) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.2/assets/NIH_M_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### mesenteric plexus `http://purl.obolibrary.org/obo/UBERON_0035771` + +#### Added +- [mesenteric plexus](http://purl.obolibrary.org/obo/UBERON_0035771) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [mesenteric plexus](http://purl.obolibrary.org/obo/UBERON_0035771) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### metazoa_core `http://purl.obolibrary.org/obo/uberon/core#metazoa_core` + +#### Added +- [metazoa_core](http://purl.obolibrary.org/obo/uberon/core#metazoa_core) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### middle cardiac vein `http://purl.obolibrary.org/obo/UBERON_0009687` +#### Removed +- [middle cardiac vein](http://purl.obolibrary.org/obo/UBERON_0009687) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [middle cardiac vein](http://purl.obolibrary.org/obo/UBERON_0009687) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [middle cardiac vein](http://purl.obolibrary.org/obo/UBERON_0009687) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [middle cardiac vein](http://purl.obolibrary.org/obo/UBERON_0009687) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [middle cardiac vein](http://purl.obolibrary.org/obo/UBERON_0009687) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [middle cardiac vein](http://purl.obolibrary.org/obo/UBERON_0009687) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [middle cardiac vein](http://purl.obolibrary.org/obo/UBERON_0009687) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [middle cardiac vein](http://purl.obolibrary.org/obo/UBERON_0009687) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### middle colic artery `http://purl.obolibrary.org/obo/UBERON_0001196` +#### Removed +- [middle colic artery](http://purl.obolibrary.org/obo/UBERON_0001196) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [middle colic artery](http://purl.obolibrary.org/obo/UBERON_0001196) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [middle colic artery](http://purl.obolibrary.org/obo/UBERON_0001196) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [middle colic artery](http://purl.obolibrary.org/obo/UBERON_0001196) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [middle colic artery](http://purl.obolibrary.org/obo/UBERON_0001196) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [middle colic artery](http://purl.obolibrary.org/obo/UBERON_0001196) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [middle colic artery](http://purl.obolibrary.org/obo/UBERON_0001196) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### middle colic vein `http://purl.obolibrary.org/obo/UBERON_0001218` +#### Removed +- [middle colic vein](http://purl.obolibrary.org/obo/UBERON_0001218) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [middle colic vein](http://purl.obolibrary.org/obo/UBERON_0001218) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [middle colic vein](http://purl.obolibrary.org/obo/UBERON_0001218) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [middle colic vein](http://purl.obolibrary.org/obo/UBERON_0001218) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [middle colic vein](http://purl.obolibrary.org/obo/UBERON_0001218) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [middle colic vein](http://purl.obolibrary.org/obo/UBERON_0001218) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [middle colic vein](http://purl.obolibrary.org/obo/UBERON_0001218) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### middle frontal gyrus `http://purl.obolibrary.org/obo/UBERON_0002702` +#### Removed +- [middle frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0002702) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [middle frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0002702) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [middle frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0002702) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [middle frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0002702) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [middle frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0002702) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [middle frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0002702) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [middle frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0002702) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [middle frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0002702) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### middle lobe of right lung `http://purl.obolibrary.org/obo/UBERON_0002174` +#### Removed +- [middle lobe of right lung](http://purl.obolibrary.org/obo/UBERON_0002174) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [middle lobe of right lung](http://purl.obolibrary.org/obo/UBERON_0002174) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [middle lobe of right lung](http://purl.obolibrary.org/obo/UBERON_0002174) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [middle lobe of right lung](http://purl.obolibrary.org/obo/UBERON_0002174) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [middle lobe of right lung](http://purl.obolibrary.org/obo/UBERON_0002174) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [middle lobe of right lung](http://purl.obolibrary.org/obo/UBERON_0002174) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [middle lobe of right lung](http://purl.obolibrary.org/obo/UBERON_0002174) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [middle lobe of right lung](http://purl.obolibrary.org/obo/UBERON_0002174) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [middle lobe of right lung](http://purl.obolibrary.org/obo/UBERON_0002174) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### middle temporal gyrus `http://purl.obolibrary.org/obo/UBERON_0002771` +#### Removed +- [middle temporal gyrus](http://purl.obolibrary.org/obo/UBERON_0002771) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [middle temporal gyrus](http://purl.obolibrary.org/obo/UBERON_0002771) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [middle temporal gyrus](http://purl.obolibrary.org/obo/UBERON_0002771) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [middle temporal gyrus](http://purl.obolibrary.org/obo/UBERON_0002771) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [middle temporal gyrus](http://purl.obolibrary.org/obo/UBERON_0002771) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [middle temporal gyrus](http://purl.obolibrary.org/obo/UBERON_0002771) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [middle temporal gyrus](http://purl.obolibrary.org/obo/UBERON_0002771) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [middle temporal gyrus](http://purl.obolibrary.org/obo/UBERON_0002771) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### minor calyx `http://purl.obolibrary.org/obo/UBERON_0001227` + +#### Added +- [minor calyx](http://purl.obolibrary.org/obo/UBERON_0001227) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [minor calyx](http://purl.obolibrary.org/obo/UBERON_0001227) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [minor calyx](http://purl.obolibrary.org/obo/UBERON_0001227) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [minor calyx](http://purl.obolibrary.org/obo/UBERON_0001227) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [minor calyx](http://purl.obolibrary.org/obo/UBERON_0001227) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [minor calyx](http://purl.obolibrary.org/obo/UBERON_0001227) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [minor calyx](http://purl.obolibrary.org/obo/UBERON_0001227) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [minor calyx](http://purl.obolibrary.org/obo/UBERON_0001227) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### mitral valve `http://purl.obolibrary.org/obo/UBERON_0002135` +#### Removed +- [mitral valve](http://purl.obolibrary.org/obo/UBERON_0002135) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [mitral valve](http://purl.obolibrary.org/obo/UBERON_0002135) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [mitral valve](http://purl.obolibrary.org/obo/UBERON_0002135) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [mitral valve](http://purl.obolibrary.org/obo/UBERON_0002135) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [mitral valve](http://purl.obolibrary.org/obo/UBERON_0002135) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [mitral valve](http://purl.obolibrary.org/obo/UBERON_0002135) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [mitral valve](http://purl.obolibrary.org/obo/UBERON_0002135) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [mitral valve](http://purl.obolibrary.org/obo/UBERON_0002135) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### myenteric nerve plexus of small intestine `http://purl.obolibrary.org/obo/UBERON_8410063` + +#### Added +- [myenteric nerve plexus of small intestine](http://purl.obolibrary.org/obo/UBERON_8410063) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [myenteric nerve plexus of small intestine](http://purl.obolibrary.org/obo/UBERON_8410063) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### nasociliary nerve `http://purl.obolibrary.org/obo/UBERON_0022300` + +#### Added +- [nasociliary nerve](http://purl.obolibrary.org/obo/UBERON_0022300) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [nasociliary nerve](http://purl.obolibrary.org/obo/UBERON_0022300) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### nasopalatine nerve `http://purl.obolibrary.org/obo/UBERON_0008810` + +#### Added +- [nasopalatine nerve](http://purl.obolibrary.org/obo/UBERON_0008810) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [nasopalatine nerve](http://purl.obolibrary.org/obo/UBERON_0008810) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### nerve of cervical vertebra `http://purl.obolibrary.org/obo/UBERON_0000962` + +#### Added +- [nerve of cervical vertebra](http://purl.obolibrary.org/obo/UBERON_0000962) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [nerve of cervical vertebra](http://purl.obolibrary.org/obo/UBERON_0000962) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### nerve root `http://purl.obolibrary.org/obo/UBERON_0002211` + +#### Added +- [nerve root](http://purl.obolibrary.org/obo/UBERON_0002211) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [nerve root](http://purl.obolibrary.org/obo/UBERON_0002211) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### non_informative `http://purl.obolibrary.org/obo/uberon/core#non_informative` + +#### Added +- [non_informative](http://purl.obolibrary.org/obo/uberon/core#non_informative) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### obsolete 4-8 cell stage `http://purl.obolibrary.org/obo/UBERON_0007234` +#### Removed +- [obsolete 4-8 cell stage](http://purl.obolibrary.org/obo/UBERON_0007234) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0019250" + +#### Added +- [obsolete 4-8 cell stage](http://purl.obolibrary.org/obo/UBERON_0007234) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [4-8 cell stage embryo](http://purl.obolibrary.org/obo/UBERON_0019250) + + +### obsolete B cell `http://purl.obolibrary.org/obo/UBERON_3010309` +#### Removed +- [obsolete B cell](http://purl.obolibrary.org/obo/UBERON_3010309) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000236" + +#### Added +- [obsolete B cell](http://purl.obolibrary.org/obo/UBERON_3010309) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000236](http://purl.obolibrary.org/obo/CL_0000236) + + +### obsolete Dorsal tail tubercle `http://purl.obolibrary.org/obo/UBERON_3010812` +#### Removed +- [obsolete Dorsal tail tubercle](http://purl.obolibrary.org/obo/UBERON_3010812) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:3010201" + +#### Added +- [obsolete Dorsal tail tubercle](http://purl.obolibrary.org/obo/UBERON_3010812) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [dorsal tail tubercle](http://purl.obolibrary.org/obo/UBERON_3010201) + + +### obsolete Drosophila lymph gland `http://purl.obolibrary.org/obo/UBERON_0005059` +#### Removed +- [obsolete Drosophila lymph gland](http://purl.obolibrary.org/obo/UBERON_0005059) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00001668" + +#### Added +- [obsolete Drosophila lymph gland](http://purl.obolibrary.org/obo/UBERON_0005059) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00001668](http://purl.obolibrary.org/obo/FBbt_00001668) + + +### obsolete Kolmer-Agduhr neuron `http://purl.obolibrary.org/obo/UBERON_2005240` +#### Removed +- [obsolete Kolmer-Agduhr neuron](http://purl.obolibrary.org/obo/UBERON_2005240) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0005007" + +#### Added +- [obsolete Kolmer-Agduhr neuron](http://purl.obolibrary.org/obo/UBERON_2005240) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0005007](http://purl.obolibrary.org/obo/CL_0005007) + + +### obsolete Merkel cell `http://purl.obolibrary.org/obo/UBERON_3010626` +#### Removed +- [obsolete Merkel cell](http://purl.obolibrary.org/obo/UBERON_3010626) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000242" + +#### Added +- [obsolete Merkel cell](http://purl.obolibrary.org/obo/UBERON_3010626) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000242](http://purl.obolibrary.org/obo/CL_0000242) + + +### obsolete Nobelian bone `http://purl.obolibrary.org/obo/UBERON_3000885` +#### Removed +- [obsolete Nobelian bone](http://purl.obolibrary.org/obo/UBERON_3000885) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:3010240" + +#### Added +- [obsolete Nobelian bone](http://purl.obolibrary.org/obo/UBERON_3000885) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [Nobelian rod](http://purl.obolibrary.org/obo/UBERON_3010240) + + +### obsolete Schreckstoff `http://purl.obolibrary.org/obo/UBERON_2002050` +#### Removed +- [obsolete Schreckstoff](http://purl.obolibrary.org/obo/UBERON_2002050) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CHEBI:133299" + +#### Added +- [obsolete Schreckstoff](http://purl.obolibrary.org/obo/UBERON_2002050) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CHEBI_133299](http://purl.obolibrary.org/obo/CHEBI_133299) + + +### obsolete T cell `http://purl.obolibrary.org/obo/UBERON_3010311` +#### Removed +- [obsolete T cell](http://purl.obolibrary.org/obo/UBERON_3010311) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000084" + +#### Added +- [obsolete T cell](http://purl.obolibrary.org/obo/UBERON_3010311) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000084](http://purl.obolibrary.org/obo/CL_0000084) + + +### obsolete abdominal segment `http://purl.obolibrary.org/obo/UBERON_0000917` +#### Removed +- [obsolete abdominal segment](http://purl.obolibrary.org/obo/UBERON_0000917) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0002417" + +- [obsolete abdominal segment](http://purl.obolibrary.org/obo/UBERON_0000917) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00000021" + +- [obsolete abdominal segment](http://purl.obolibrary.org/obo/UBERON_0000917) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000016" + +- [obsolete abdominal segment](http://purl.obolibrary.org/obo/UBERON_0000917) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "SPD:0000055" + +#### Added +- [obsolete abdominal segment](http://purl.obolibrary.org/obo/UBERON_0000917) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000016](http://purl.obolibrary.org/obo/HAO_0000016) + +- [obsolete abdominal segment](http://purl.obolibrary.org/obo/UBERON_0000917) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [SPD_0000055](http://purl.obolibrary.org/obo/SPD_0000055) + +- [obsolete abdominal segment](http://purl.obolibrary.org/obo/UBERON_0000917) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [abdominal segment of trunk](http://purl.obolibrary.org/obo/UBERON_0002417) + +- [obsolete abdominal segment](http://purl.obolibrary.org/obo/UBERON_0000917) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00000021](http://purl.obolibrary.org/obo/FBbt_00000021) + + +### obsolete accessory nasal sac `http://purl.obolibrary.org/obo/UBERON_4300204` +#### Removed +- [obsolete accessory nasal sac](http://purl.obolibrary.org/obo/UBERON_4300204) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:4300152" + +#### Added +- [obsolete accessory nasal sac](http://purl.obolibrary.org/obo/UBERON_4300204) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [accessory nasal sac](http://purl.obolibrary.org/obo/UBERON_4300152) + + +### obsolete adductor `http://purl.obolibrary.org/obo/UBERON_2000463` +#### Removed +- [obsolete adductor](http://purl.obolibrary.org/obo/UBERON_2000463) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0011145" + +#### Added +- [obsolete adductor](http://purl.obolibrary.org/obo/UBERON_2000463) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [adductor muscle](http://purl.obolibrary.org/obo/UBERON_0011145) + + +### obsolete adductor muscle `http://purl.obolibrary.org/obo/UBERON_0000952` +#### Removed +- [obsolete adductor muscle](http://purl.obolibrary.org/obo/UBERON_0000952) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0011145" + +- [obsolete adductor muscle](http://purl.obolibrary.org/obo/UBERON_0000952) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0011144" + +#### Added +- [obsolete adductor muscle](http://purl.obolibrary.org/obo/UBERON_0000952) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [adductor muscle of hip](http://purl.obolibrary.org/obo/UBERON_0011144) + +- [obsolete adductor muscle](http://purl.obolibrary.org/obo/UBERON_0000952) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [adductor muscle](http://purl.obolibrary.org/obo/UBERON_0011145) + + +### obsolete adrenal vein `http://purl.obolibrary.org/obo/UBERON_0009660` +#### Removed +- [obsolete adrenal vein](http://purl.obolibrary.org/obo/UBERON_0009660) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0001146" + +#### Added +- [obsolete adrenal vein](http://purl.obolibrary.org/obo/UBERON_0009660) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [suprarenal vein](http://purl.obolibrary.org/obo/UBERON_0001146) + + +### obsolete adult abdominal sensillum `http://purl.obolibrary.org/obo/UBERON_0000968` +#### Removed +- [obsolete adult abdominal sensillum](http://purl.obolibrary.org/obo/UBERON_0000968) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MIAA:0000206" + +- [obsolete adult abdominal sensillum](http://purl.obolibrary.org/obo/UBERON_0000968) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004461" + +- [obsolete adult abdominal sensillum](http://purl.obolibrary.org/obo/UBERON_0000968) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MAT:0000206" + +#### Added +- [obsolete adult abdominal sensillum](http://purl.obolibrary.org/obo/UBERON_0000968) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MIAA_0000206](http://purl.obolibrary.org/obo/MIAA_0000206) + +- [obsolete adult abdominal sensillum](http://purl.obolibrary.org/obo/UBERON_0000968) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MAT_0000206](http://purl.obolibrary.org/obo/MAT_0000206) + +- [obsolete adult abdominal sensillum](http://purl.obolibrary.org/obo/UBERON_0000968) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004461](http://purl.obolibrary.org/obo/FBbt_00004461) + + +### obsolete adult arthropod abdomen `http://purl.obolibrary.org/obo/UBERON_0003146` +#### Removed +- [obsolete adult arthropod abdomen](http://purl.obolibrary.org/obo/UBERON_0003146) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000088" + +- [obsolete adult arthropod abdomen](http://purl.obolibrary.org/obo/UBERON_0003146) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00003023" + +#### Added +- [obsolete adult arthropod abdomen](http://purl.obolibrary.org/obo/UBERON_0003146) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00003023](http://purl.obolibrary.org/obo/FBbt_00003023) + +- [obsolete adult arthropod abdomen](http://purl.obolibrary.org/obo/UBERON_0003146) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000088](http://purl.obolibrary.org/obo/HAO_0000088) + + +### obsolete adult arthropod thorax `http://purl.obolibrary.org/obo/UBERON_0003145` +#### Removed +- [obsolete adult arthropod thorax](http://purl.obolibrary.org/obo/UBERON_0003145) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000090" + +- [obsolete adult arthropod thorax](http://purl.obolibrary.org/obo/UBERON_0003145) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00003018" + +#### Added +- [obsolete adult arthropod thorax](http://purl.obolibrary.org/obo/UBERON_0003145) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000090](http://purl.obolibrary.org/obo/HAO_0000090) + +- [obsolete adult arthropod thorax](http://purl.obolibrary.org/obo/UBERON_0003145) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00003018](http://purl.obolibrary.org/obo/FBbt_00003018) + + +### obsolete adult eye primordium `http://purl.obolibrary.org/obo/UBERON_0014457` +#### Removed +- [obsolete adult eye primordium](http://purl.obolibrary.org/obo/UBERON_0014457) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "XAO:0000227" + +- [obsolete adult eye primordium](http://purl.obolibrary.org/obo/UBERON_0014457) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0003071" + +- [obsolete adult eye primordium](http://purl.obolibrary.org/obo/UBERON_0014457) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:10005249" + +#### Added +- [obsolete adult eye primordium](http://purl.obolibrary.org/obo/UBERON_0014457) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [XAO_0000227](http://purl.obolibrary.org/obo/XAO_0000227) + +- [obsolete adult eye primordium](http://purl.obolibrary.org/obo/UBERON_0014457) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_10005249](http://purl.obolibrary.org/obo/FBbt_10005249) + +- [obsolete adult eye primordium](http://purl.obolibrary.org/obo/UBERON_0014457) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [eye primordium](http://purl.obolibrary.org/obo/UBERON_0003071) + + +### obsolete adult tagma `http://purl.obolibrary.org/obo/UBERON_0003144` +#### Removed +- [obsolete adult tagma](http://purl.obolibrary.org/obo/UBERON_0003144) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000089" + +- [obsolete adult tagma](http://purl.obolibrary.org/obo/UBERON_0003144) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00003005" + +#### Added +- [obsolete adult tagma](http://purl.obolibrary.org/obo/UBERON_0003144) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00003005](http://purl.obolibrary.org/obo/FBbt_00003005) + +- [obsolete adult tagma](http://purl.obolibrary.org/obo/UBERON_0003144) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000089](http://purl.obolibrary.org/obo/HAO_0000089) + + +### obsolete adult thoracic sensillum `http://purl.obolibrary.org/obo/UBERON_0000967` +#### Removed +- [obsolete adult thoracic sensillum](http://purl.obolibrary.org/obo/UBERON_0000967) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MIAA:0000205" + +- [obsolete adult thoracic sensillum](http://purl.obolibrary.org/obo/UBERON_0000967) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MAT:0000205" + +- [obsolete adult thoracic sensillum](http://purl.obolibrary.org/obo/UBERON_0000967) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004245" + +#### Added +- [obsolete adult thoracic sensillum](http://purl.obolibrary.org/obo/UBERON_0000967) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MAT_0000205](http://purl.obolibrary.org/obo/MAT_0000205) + +- [obsolete adult thoracic sensillum](http://purl.obolibrary.org/obo/UBERON_0000967) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MIAA_0000205](http://purl.obolibrary.org/obo/MIAA_0000205) + +- [obsolete adult thoracic sensillum](http://purl.obolibrary.org/obo/UBERON_0000967) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004245](http://purl.obolibrary.org/obo/FBbt_00004245) + + +### obsolete adventitia of uterus `http://purl.obolibrary.org/obo/UBERON_0005741` +#### Removed +- [obsolete adventitia of uterus](http://purl.obolibrary.org/obo/UBERON_0005741) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0001297" + +- [obsolete adventitia of uterus](http://purl.obolibrary.org/obo/UBERON_0005741) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EMAPA:29925" + +- [obsolete adventitia of uterus](http://purl.obolibrary.org/obo/UBERON_0005741) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EMAPA:29933" + +#### Added +- [obsolete adventitia of uterus](http://purl.obolibrary.org/obo/UBERON_0005741) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EMAPA_29933](http://purl.obolibrary.org/obo/EMAPA_29933) + +- [obsolete adventitia of uterus](http://purl.obolibrary.org/obo/UBERON_0005741) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [serosa of uterus](http://purl.obolibrary.org/obo/UBERON_0001297) + +- [obsolete adventitia of uterus](http://purl.obolibrary.org/obo/UBERON_0005741) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EMAPA_29925](http://purl.obolibrary.org/obo/EMAPA_29925) + + +### obsolete aedeagus `http://purl.obolibrary.org/obo/UBERON_0003198` +#### Removed +- [obsolete aedeagus](http://purl.obolibrary.org/obo/UBERON_0003198) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004850" + +- [obsolete aedeagus](http://purl.obolibrary.org/obo/UBERON_0003198) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000091" + +#### Added +- [obsolete aedeagus](http://purl.obolibrary.org/obo/UBERON_0003198) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000091](http://purl.obolibrary.org/obo/HAO_0000091) + +- [obsolete aedeagus](http://purl.obolibrary.org/obo/UBERON_0003198) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004850](http://purl.obolibrary.org/obo/FBbt_00004850) + + +### obsolete anal fin `http://purl.obolibrary.org/obo/UBERON_2001162` +#### Removed +- [obsolete anal fin](http://purl.obolibrary.org/obo/UBERON_2001162) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:4000163" + +#### Added +- [obsolete anal fin](http://purl.obolibrary.org/obo/UBERON_2001162) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [anal fin](http://purl.obolibrary.org/obo/UBERON_4000163) + + +### obsolete anal fin lepidotrichium `http://purl.obolibrary.org/obo/UBERON_2001421` +#### Removed +- [obsolete anal fin lepidotrichium](http://purl.obolibrary.org/obo/UBERON_2001421) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:4000176" + +#### Added +- [obsolete anal fin lepidotrichium](http://purl.obolibrary.org/obo/UBERON_2001421) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [anal fin lepidotrichium](http://purl.obolibrary.org/obo/UBERON_4000176) + + +### obsolete anal fin skeleton `http://purl.obolibrary.org/obo/UBERON_2000167` +#### Removed +- [obsolete anal fin skeleton](http://purl.obolibrary.org/obo/UBERON_2000167) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:4000166" + +#### Added +- [obsolete anal fin skeleton](http://purl.obolibrary.org/obo/UBERON_2000167) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [anal fin skeleton](http://purl.obolibrary.org/obo/UBERON_4000166) + + +### obsolete anepisternum `http://purl.obolibrary.org/obo/UBERON_0003180` +#### Removed +- [obsolete anepisternum](http://purl.obolibrary.org/obo/UBERON_0003180) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004597" + +- [obsolete anepisternum](http://purl.obolibrary.org/obo/UBERON_0003180) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000094" + +#### Added +- [obsolete anepisternum](http://purl.obolibrary.org/obo/UBERON_0003180) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000094](http://purl.obolibrary.org/obo/HAO_0000094) + +- [obsolete anepisternum](http://purl.obolibrary.org/obo/UBERON_0003180) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004597](http://purl.obolibrary.org/obo/FBbt_00004597) + + +### obsolete animal hemisphere `http://purl.obolibrary.org/obo/UBERON_3010325` +#### Removed +- [obsolete animal hemisphere](http://purl.obolibrary.org/obo/UBERON_3010325) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0012284" + +#### Added +- [obsolete animal hemisphere](http://purl.obolibrary.org/obo/UBERON_3010325) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [animal hemisphere](http://purl.obolibrary.org/obo/UBERON_0012284) + + +### obsolete antennal segment `http://purl.obolibrary.org/obo/UBERON_0003137` +#### Removed +- [obsolete antennal segment](http://purl.obolibrary.org/obo/UBERON_0003137) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00000009" + +- [obsolete antennal segment](http://purl.obolibrary.org/obo/UBERON_0003137) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000104" + +#### Added +- [obsolete antennal segment](http://purl.obolibrary.org/obo/UBERON_0003137) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000104](http://purl.obolibrary.org/obo/HAO_0000104) + +- [obsolete antennal segment](http://purl.obolibrary.org/obo/UBERON_0003137) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00000009](http://purl.obolibrary.org/obo/FBbt_00000009) + + +### obsolete anterior notal wing process `http://purl.obolibrary.org/obo/UBERON_0003176` +#### Removed +- [obsolete anterior notal wing process](http://purl.obolibrary.org/obo/UBERON_0003176) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004585" + +- [obsolete anterior notal wing process](http://purl.obolibrary.org/obo/UBERON_0003176) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000120" + +#### Added +- [obsolete anterior notal wing process](http://purl.obolibrary.org/obo/UBERON_0003176) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000120](http://purl.obolibrary.org/obo/HAO_0000120) + +- [obsolete anterior notal wing process](http://purl.obolibrary.org/obo/UBERON_0003176) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004585](http://purl.obolibrary.org/obo/FBbt_00004585) + + +### obsolete anterior tentorial pit `http://purl.obolibrary.org/obo/UBERON_0003159` +#### Removed +- [obsolete anterior tentorial pit](http://purl.obolibrary.org/obo/UBERON_0003159) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000126" + +- [obsolete anterior tentorial pit](http://purl.obolibrary.org/obo/UBERON_0003159) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004502" + +#### Added +- [obsolete anterior tentorial pit](http://purl.obolibrary.org/obo/UBERON_0003159) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000126](http://purl.obolibrary.org/obo/HAO_0000126) + +- [obsolete anterior tentorial pit](http://purl.obolibrary.org/obo/UBERON_0003159) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004502](http://purl.obolibrary.org/obo/FBbt_00004502) + + +### obsolete apical ectodermal ridge forelimb `http://purl.obolibrary.org/obo/UBERON_0005241` +#### Removed +- [obsolete apical ectodermal ridge forelimb](http://purl.obolibrary.org/obo/UBERON_0005241) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "VHOG:0001064" + +#### Added +- [obsolete apical ectodermal ridge forelimb](http://purl.obolibrary.org/obo/UBERON_0005241) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [VHOG_0001064](http://purl.obolibrary.org/obo/VHOG_0001064) + + +### obsolete apical ectodermal ridge hindlimb `http://purl.obolibrary.org/obo/UBERON_0005242` +#### Removed +- [obsolete apical ectodermal ridge hindlimb](http://purl.obolibrary.org/obo/UBERON_0005242) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "VHOG:0001066" + +#### Added +- [obsolete apical ectodermal ridge hindlimb](http://purl.obolibrary.org/obo/UBERON_0005242) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [VHOG_0001066](http://purl.obolibrary.org/obo/VHOG_0001066) + + +### obsolete apodeme `http://purl.obolibrary.org/obo/UBERON_0003203` +#### Removed +- [obsolete apodeme](http://purl.obolibrary.org/obo/UBERON_0003203) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00005091" + +- [obsolete apodeme](http://purl.obolibrary.org/obo/UBERON_0003203) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000142" + +#### Added +- [obsolete apodeme](http://purl.obolibrary.org/obo/UBERON_0003203) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000142](http://purl.obolibrary.org/obo/HAO_0000142) + +- [obsolete apodeme](http://purl.obolibrary.org/obo/UBERON_0003203) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00005091](http://purl.obolibrary.org/obo/FBbt_00005091) + + +### obsolete apophysis `http://purl.obolibrary.org/obo/UBERON_0003206` +#### Removed +- [obsolete apophysis](http://purl.obolibrary.org/obo/UBERON_0003206) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000143" + +- [obsolete apophysis](http://purl.obolibrary.org/obo/UBERON_0003206) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00005813" + +- [obsolete apophysis](http://purl.obolibrary.org/obo/UBERON_0003206) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:75428" + +#### Added +- [obsolete apophysis](http://purl.obolibrary.org/obo/UBERON_0003206) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_75428](http://purl.obolibrary.org/obo/FMA_75428) + +- [obsolete apophysis](http://purl.obolibrary.org/obo/UBERON_0003206) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000143](http://purl.obolibrary.org/obo/HAO_0000143) + +- [obsolete apophysis](http://purl.obolibrary.org/obo/UBERON_0003206) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00005813](http://purl.obolibrary.org/obo/FBbt_00005813) + + +### obsolete aqueous humor `http://purl.obolibrary.org/obo/UBERON_2002288` +#### Removed +- [obsolete aqueous humor](http://purl.obolibrary.org/obo/UBERON_2002288) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0001796" + +#### Added +- [obsolete aqueous humor](http://purl.obolibrary.org/obo/UBERON_2002288) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [aqueous humor of eyeball](http://purl.obolibrary.org/obo/UBERON_0001796) + + +### obsolete arthropod appendage segment `http://purl.obolibrary.org/obo/UBERON_0003207` +#### Removed +- [obsolete arthropod appendage segment](http://purl.obolibrary.org/obo/UBERON_0003207) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0010758" + +#### Added +- [obsolete arthropod appendage segment](http://purl.obolibrary.org/obo/UBERON_0003207) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [subdivision of organism along appendicular axis](http://purl.obolibrary.org/obo/UBERON_0010758) + + +### obsolete arthropod hypopharynx `http://purl.obolibrary.org/obo/UBERON_0003132` +#### Removed +- [obsolete arthropod hypopharynx](http://purl.obolibrary.org/obo/UBERON_0003132) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00005751" + +- [obsolete arthropod hypopharynx](http://purl.obolibrary.org/obo/UBERON_0003132) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "TGMA:0000090" + +- [obsolete arthropod hypopharynx](http://purl.obolibrary.org/obo/UBERON_0003132) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000409" + +#### Added +- [obsolete arthropod hypopharynx](http://purl.obolibrary.org/obo/UBERON_0003132) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [TGMA_0000090](http://purl.obolibrary.org/obo/TGMA_0000090) + +- [obsolete arthropod hypopharynx](http://purl.obolibrary.org/obo/UBERON_0003132) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00005751](http://purl.obolibrary.org/obo/FBbt_00005751) + +- [obsolete arthropod hypopharynx](http://purl.obolibrary.org/obo/UBERON_0003132) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000409](http://purl.obolibrary.org/obo/HAO_0000409) + + +### obsolete arthropod oviduct `http://purl.obolibrary.org/obo/UBERON_0006835` +#### Removed +- [obsolete arthropod oviduct](http://purl.obolibrary.org/obo/UBERON_0006835) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "TADS:0000415" + +- [obsolete arthropod oviduct](http://purl.obolibrary.org/obo/UBERON_0006835) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004911" + +#### Added +- [obsolete arthropod oviduct](http://purl.obolibrary.org/obo/UBERON_0006835) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [TADS_0000415](http://purl.obolibrary.org/obo/TADS_0000415) + +- [obsolete arthropod oviduct](http://purl.obolibrary.org/obo/UBERON_0006835) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004911](http://purl.obolibrary.org/obo/FBbt_00004911) + + +### obsolete articular cartilage `http://purl.obolibrary.org/obo/UBERON_0001086` +#### Removed +- [obsolete articular cartilage](http://purl.obolibrary.org/obo/UBERON_0001086) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0011002" + +- [obsolete articular cartilage](http://purl.obolibrary.org/obo/UBERON_0001086) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0010996" + +#### Added +- [obsolete articular cartilage](http://purl.obolibrary.org/obo/UBERON_0001086) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [articular cartilage element](http://purl.obolibrary.org/obo/UBERON_0011002) + +- [obsolete articular cartilage](http://purl.obolibrary.org/obo/UBERON_0001086) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [articular cartilage of joint](http://purl.obolibrary.org/obo/UBERON_0010996) + + +### obsolete articulation `http://purl.obolibrary.org/obo/UBERON_0003205` +#### Removed +- [obsolete articulation](http://purl.obolibrary.org/obo/UBERON_0003205) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "ncithesaurus:Articulation" + +- [obsolete articulation](http://purl.obolibrary.org/obo/UBERON_0003205) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00005811" + +- [obsolete articulation](http://purl.obolibrary.org/obo/UBERON_0003205) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000151" + +#### Added +- [obsolete articulation](http://purl.obolibrary.org/obo/UBERON_0003205) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ncithesaurus_Articulation](http://purl.obolibrary.org/obo/ncithesaurus_Articulation) + +- [obsolete articulation](http://purl.obolibrary.org/obo/UBERON_0003205) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00005811](http://purl.obolibrary.org/obo/FBbt_00005811) + +- [obsolete articulation](http://purl.obolibrary.org/obo/UBERON_0003205) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000151](http://purl.obolibrary.org/obo/HAO_0000151) + + +### obsolete atrium `http://purl.obolibrary.org/obo/UBERON_0001050` +#### Removed +- [obsolete atrium](http://purl.obolibrary.org/obo/UBERON_0001050) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0002081" + +- [obsolete atrium](http://purl.obolibrary.org/obo/UBERON_0001050) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:85574" + +#### Added +- [obsolete atrium](http://purl.obolibrary.org/obo/UBERON_0001050) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [cardiac atrium](http://purl.obolibrary.org/obo/UBERON_0002081) + +- [obsolete atrium](http://purl.obolibrary.org/obo/UBERON_0001050) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_85574](http://purl.obolibrary.org/obo/FMA_85574) + + +### obsolete auditory epithelial support cell `http://purl.obolibrary.org/obo/UBERON_2005244` +#### Removed +- [obsolete auditory epithelial support cell](http://purl.obolibrary.org/obo/UBERON_2005244) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0005014" + +#### Added +- [obsolete auditory epithelial support cell](http://purl.obolibrary.org/obo/UBERON_2005244) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0005014](http://purl.obolibrary.org/obo/CL_0005014) + + +### obsolete autopalatine `http://purl.obolibrary.org/obo/UBERON_0004748` +#### Removed +- [obsolete autopalatine](http://purl.obolibrary.org/obo/UBERON_0004748) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "AAO:0000372" + +- [obsolete autopalatine](http://purl.obolibrary.org/obo/UBERON_0004748) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "ZFA:0000620" + +#### Added +- [obsolete autopalatine](http://purl.obolibrary.org/obo/UBERON_0004748) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ZFA_0000620](http://purl.obolibrary.org/obo/ZFA_0000620) + +- [obsolete autopalatine](http://purl.obolibrary.org/obo/UBERON_0004748) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [AAO_0000372](http://purl.obolibrary.org/obo/AAO_0000372) + + +### obsolete auxilia `http://purl.obolibrary.org/obo/UBERON_0003188` +#### Removed +- [obsolete auxilia](http://purl.obolibrary.org/obo/UBERON_0003188) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004654" + +- [obsolete auxilia](http://purl.obolibrary.org/obo/UBERON_0003188) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000153" + +#### Added +- [obsolete auxilia](http://purl.obolibrary.org/obo/UBERON_0003188) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004654](http://purl.obolibrary.org/obo/FBbt_00004654) + +- [obsolete auxilia](http://purl.obolibrary.org/obo/UBERON_0003188) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000153](http://purl.obolibrary.org/obo/HAO_0000153) + + +### obsolete axillary cord `http://purl.obolibrary.org/obo/UBERON_0003193` +#### Removed +- [obsolete axillary cord](http://purl.obolibrary.org/obo/UBERON_0003193) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000157" + +- [obsolete axillary cord](http://purl.obolibrary.org/obo/UBERON_0003193) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004744" + +#### Added +- [obsolete axillary cord](http://purl.obolibrary.org/obo/UBERON_0003193) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000157](http://purl.obolibrary.org/obo/HAO_0000157) + +- [obsolete axillary cord](http://purl.obolibrary.org/obo/UBERON_0003193) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004744](http://purl.obolibrary.org/obo/FBbt_00004744) + + +### obsolete axillary sclerite `http://purl.obolibrary.org/obo/UBERON_0003192` +#### Removed +- [obsolete axillary sclerite](http://purl.obolibrary.org/obo/UBERON_0003192) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000159" + +- [obsolete axillary sclerite](http://purl.obolibrary.org/obo/UBERON_0003192) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004737" + +#### Added +- [obsolete axillary sclerite](http://purl.obolibrary.org/obo/UBERON_0003192) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004737](http://purl.obolibrary.org/obo/FBbt_00004737) + +- [obsolete axillary sclerite](http://purl.obolibrary.org/obo/UBERON_0003192) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000159](http://purl.obolibrary.org/obo/HAO_0000159) + + +### obsolete basibranchial element `http://purl.obolibrary.org/obo/UBERON_2001914` +#### Removed +- [obsolete basibranchial element](http://purl.obolibrary.org/obo/UBERON_2001914) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0004740" + +#### Added +- [obsolete basibranchial element](http://purl.obolibrary.org/obo/UBERON_2001914) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [basibranchial bone](http://purl.obolibrary.org/obo/UBERON_0004740) + + +### obsolete basihyal `http://purl.obolibrary.org/obo/UBERON_3000957` +#### Removed +- [obsolete basihyal](http://purl.obolibrary.org/obo/UBERON_3000957) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0011614" + +#### Added +- [obsolete basihyal](http://purl.obolibrary.org/obo/UBERON_3000957) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [basihyal element](http://purl.obolibrary.org/obo/UBERON_0011614) + + +### obsolete basihyal bone `http://purl.obolibrary.org/obo/UBERON_4000007` +#### Removed +- [obsolete basihyal bone](http://purl.obolibrary.org/obo/UBERON_4000007) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0011618" + +#### Added +- [obsolete basihyal bone](http://purl.obolibrary.org/obo/UBERON_4000007) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [basihyal bone](http://purl.obolibrary.org/obo/UBERON_0011618) + + +### obsolete basihyal cartilage `http://purl.obolibrary.org/obo/UBERON_4000014` +#### Removed +- [obsolete basihyal cartilage](http://purl.obolibrary.org/obo/UBERON_4000014) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0011615" + +#### Added +- [obsolete basihyal cartilage](http://purl.obolibrary.org/obo/UBERON_4000014) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [basihyal cartilage](http://purl.obolibrary.org/obo/UBERON_0011615) + + +### obsolete basihyal element `http://purl.obolibrary.org/obo/UBERON_4000005` +#### Removed +- [obsolete basihyal element](http://purl.obolibrary.org/obo/UBERON_4000005) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0011614" + +#### Added +- [obsolete basihyal element](http://purl.obolibrary.org/obo/UBERON_4000005) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [basihyal element](http://purl.obolibrary.org/obo/UBERON_0011614) + + +### obsolete basis modioli `http://purl.obolibrary.org/obo/UBERON_0006105` +#### Removed +- [obsolete basis modioli](http://purl.obolibrary.org/obo/UBERON_0006105) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2522" + +- [obsolete basis modioli](http://purl.obolibrary.org/obo/UBERON_0006105) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:75640" + +#### Added +- [obsolete basis modioli](http://purl.obolibrary.org/obo/UBERON_0006105) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2522](http://purl.obolibrary.org/obo/BIRNLEX_2522) + +- [obsolete basis modioli](http://purl.obolibrary.org/obo/UBERON_0006105) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_75640](http://purl.obolibrary.org/obo/FMA_75640) + + +### obsolete bilateral pars tuberalis `http://purl.obolibrary.org/obo/UBERON_3010543` +#### Removed +- [obsolete bilateral pars tuberalis](http://purl.obolibrary.org/obo/UBERON_3010543) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0002433" + +#### Added +- [obsolete bilateral pars tuberalis](http://purl.obolibrary.org/obo/UBERON_3010543) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [pars tuberalis of adenohypophysis](http://purl.obolibrary.org/obo/UBERON_0002433) + + +### obsolete bladder fundus `http://purl.obolibrary.org/obo/UBERON_0005447` +#### Removed +- [obsolete bladder fundus](http://purl.obolibrary.org/obo/UBERON_0005447) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0006081" + +- [obsolete bladder fundus](http://purl.obolibrary.org/obo/UBERON_0005447) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0006082" + +#### Added +- [obsolete bladder fundus](http://purl.obolibrary.org/obo/UBERON_0005447) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [fundus of urinary bladder](http://purl.obolibrary.org/obo/UBERON_0006082) + +- [obsolete bladder fundus](http://purl.obolibrary.org/obo/UBERON_0005447) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [fundus of gallbladder](http://purl.obolibrary.org/obo/UBERON_0006081) + + +### obsolete blastoderm cell `http://purl.obolibrary.org/obo/UBERON_3010553` +#### Removed +- [obsolete blastoderm cell](http://purl.obolibrary.org/obo/UBERON_3010553) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000353" + +#### Added +- [obsolete blastoderm cell](http://purl.obolibrary.org/obo/UBERON_3010553) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000353](http://purl.obolibrary.org/obo/CL_0000353) + + +### obsolete blastomere `http://purl.obolibrary.org/obo/UBERON_2000093` +#### Removed +- [obsolete blastomere](http://purl.obolibrary.org/obo/UBERON_2000093) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000353" + +#### Added +- [obsolete blastomere](http://purl.obolibrary.org/obo/UBERON_2000093) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000353](http://purl.obolibrary.org/obo/CL_0000353) + + +### obsolete blastomere `http://purl.obolibrary.org/obo/UBERON_3000044` +#### Removed +- [obsolete blastomere](http://purl.obolibrary.org/obo/UBERON_3000044) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:2000093" + +#### Added +- [obsolete blastomere](http://purl.obolibrary.org/obo/UBERON_3000044) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [obsolete blastomere](http://purl.obolibrary.org/obo/UBERON_2000093) + + +### obsolete blastomere `http://purl.obolibrary.org/obo/UBERON_0007006` +#### Removed +- [obsolete blastomere](http://purl.obolibrary.org/obo/UBERON_0007006) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:72551" + +- [obsolete blastomere](http://purl.obolibrary.org/obo/UBERON_0007006) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "ZFA:0000093" + +- [obsolete blastomere](http://purl.obolibrary.org/obo/UBERON_0007006) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "XAO:0003016" + +- [obsolete blastomere](http://purl.obolibrary.org/obo/UBERON_0007006) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "VHOG:0001221" + +- [obsolete blastomere](http://purl.obolibrary.org/obo/UBERON_0007006) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BILA:0000052" + +- [obsolete blastomere](http://purl.obolibrary.org/obo/UBERON_0007006) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000353" + +#### Added +- [obsolete blastomere](http://purl.obolibrary.org/obo/UBERON_0007006) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000353](http://purl.obolibrary.org/obo/CL_0000353) + +- [obsolete blastomere](http://purl.obolibrary.org/obo/UBERON_0007006) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ZFA_0000093](http://purl.obolibrary.org/obo/ZFA_0000093) + +- [obsolete blastomere](http://purl.obolibrary.org/obo/UBERON_0007006) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BILA_0000052](http://purl.obolibrary.org/obo/BILA_0000052) + +- [obsolete blastomere](http://purl.obolibrary.org/obo/UBERON_0007006) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [VHOG_0001221](http://purl.obolibrary.org/obo/VHOG_0001221) + +- [obsolete blastomere](http://purl.obolibrary.org/obo/UBERON_0007006) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_72551](http://purl.obolibrary.org/obo/FMA_72551) + +- [obsolete blastomere](http://purl.obolibrary.org/obo/UBERON_0007006) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [XAO_0003016](http://purl.obolibrary.org/obo/XAO_0003016) + + +### obsolete body cavity or lining `http://purl.obolibrary.org/obo/UBERON_0004458` +#### Removed +- [obsolete body cavity or lining](http://purl.obolibrary.org/obo/UBERON_0004458) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0005906" + +#### Added +- [obsolete body cavity or lining](http://purl.obolibrary.org/obo/UBERON_0004458) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [serous sac](http://purl.obolibrary.org/obo/UBERON_0005906) + + +### obsolete body ganglion `http://purl.obolibrary.org/obo/UBERON_0002545` +#### Removed +- [obsolete body ganglion](http://purl.obolibrary.org/obo/UBERON_0002545) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "WBbt:0005332" + +#### Added +- [obsolete body ganglion](http://purl.obolibrary.org/obo/UBERON_0002545) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [WBbt_0005332](http://purl.obolibrary.org/obo/WBbt_0005332) + + +### obsolete body membrane `http://purl.obolibrary.org/obo/UBERON_0023869` +#### Removed +- [obsolete body membrane](http://purl.obolibrary.org/obo/UBERON_0023869) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:090201" + +- [obsolete body membrane](http://purl.obolibrary.org/obo/UBERON_0023869) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0000158" + +#### Added +- [obsolete body membrane](http://purl.obolibrary.org/obo/UBERON_0023869) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_090201](http://purl.obolibrary.org/obo/NLXANAT_090201) + +- [obsolete body membrane](http://purl.obolibrary.org/obo/UBERON_0023869) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [membranous layer](http://purl.obolibrary.org/obo/UBERON_0000158) + + +### obsolete brachium conjunctivum `http://purl.obolibrary.org/obo/UBERON_2000624` +#### Removed +- [obsolete brachium conjunctivum](http://purl.obolibrary.org/obo/UBERON_2000624) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0002150" + +#### Added +- [obsolete brachium conjunctivum](http://purl.obolibrary.org/obo/UBERON_2000624) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [superior cerebellar peduncle](http://purl.obolibrary.org/obo/UBERON_0002150) + + +### obsolete brain of rodent `http://purl.obolibrary.org/obo/UBERON_0023939` +#### Removed +- [obsolete brain of rodent](http://purl.obolibrary.org/obo/UBERON_0023939) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0000955" + +- [obsolete brain of rodent](http://purl.obolibrary.org/obo/UBERON_0023939) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:1005016" + +#### Added +- [obsolete brain of rodent](http://purl.obolibrary.org/obo/UBERON_0023939) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_1005016](http://purl.obolibrary.org/obo/NLXANAT_1005016) + +- [obsolete brain of rodent](http://purl.obolibrary.org/obo/UBERON_0023939) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [brain](http://purl.obolibrary.org/obo/UBERON_0000955) + + +### obsolete brain ventricular zone `http://purl.obolibrary.org/obo/UBERON_0004860` +#### Removed +- [obsolete brain ventricular zone](http://purl.obolibrary.org/obo/UBERON_0004860) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0003053" + +#### Added +- [obsolete brain ventricular zone](http://purl.obolibrary.org/obo/UBERON_0004860) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ventricular zone](http://purl.obolibrary.org/obo/UBERON_0003053) + + +### obsolete brainstem reticular formation `http://purl.obolibrary.org/obo/UBERON_0015827` +#### Removed +- [obsolete brainstem reticular formation](http://purl.obolibrary.org/obo/UBERON_0015827) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0002275" + +#### Added +- [obsolete brainstem reticular formation](http://purl.obolibrary.org/obo/UBERON_0015827) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [reticular formation](http://purl.obolibrary.org/obo/UBERON_0002275) + + +### obsolete brainstem white matter `http://purl.obolibrary.org/obo/UBERON_0003545` +#### Removed +- [obsolete brainstem white matter](http://purl.obolibrary.org/obo/UBERON_0003545) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MA:0002741" + +#### Added +- [obsolete brainstem white matter](http://purl.obolibrary.org/obo/UBERON_0003545) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MA_0002741](http://purl.obolibrary.org/obo/MA_0002741) + + +### obsolete buccopharyngeal complex `http://purl.obolibrary.org/obo/UBERON_4300187` +#### Removed +- [obsolete buccopharyngeal complex](http://purl.obolibrary.org/obo/UBERON_4300187) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0000167" + +#### Added +- [obsolete buccopharyngeal complex](http://purl.obolibrary.org/obo/UBERON_4300187) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [oral cavity](http://purl.obolibrary.org/obo/UBERON_0000167) + + +### obsolete bulge `http://purl.obolibrary.org/obo/UBERON_0018306` +#### Removed +- [obsolete bulge](http://purl.obolibrary.org/obo/UBERON_0018306) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0010188" + +#### Added +- [obsolete bulge](http://purl.obolibrary.org/obo/UBERON_0018306) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [protuberance](http://purl.obolibrary.org/obo/UBERON_0010188) + + +### obsolete capitulum radii `http://purl.obolibrary.org/obo/UBERON_3000841` +#### Removed +- [obsolete capitulum radii](http://purl.obolibrary.org/obo/UBERON_3000841) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:3000840" + +#### Added +- [obsolete capitulum radii](http://purl.obolibrary.org/obo/UBERON_3000841) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [capitulum of radius](http://purl.obolibrary.org/obo/UBERON_3000840) + + +### obsolete caput epididymis `http://purl.obolibrary.org/obo/UBERON_0005188` +#### Removed +- [obsolete caput epididymis](http://purl.obolibrary.org/obo/UBERON_0005188) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0004358" + +#### Added +- [obsolete caput epididymis](http://purl.obolibrary.org/obo/UBERON_0005188) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [caput epididymis](http://purl.obolibrary.org/obo/UBERON_0004358) + + +### obsolete cartilage bridge of nasal skeleton `http://purl.obolibrary.org/obo/UBERON_3000061` +#### Removed +- [obsolete cartilage bridge of nasal skeleton](http://purl.obolibrary.org/obo/UBERON_3000061) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:3000381" + +#### Added +- [obsolete cartilage bridge of nasal skeleton](http://purl.obolibrary.org/obo/UBERON_3000061) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [paranasal commissure](http://purl.obolibrary.org/obo/UBERON_3000381) + + +### obsolete cauda epididymis `http://purl.obolibrary.org/obo/UBERON_0005190` +#### Removed +- [obsolete cauda epididymis](http://purl.obolibrary.org/obo/UBERON_0005190) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0004360" + +#### Added +- [obsolete cauda epididymis](http://purl.obolibrary.org/obo/UBERON_0005190) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [cauda epididymis](http://purl.obolibrary.org/obo/UBERON_0004360) + + +### obsolete caudal fin `http://purl.obolibrary.org/obo/UBERON_2001058` +#### Removed +- [obsolete caudal fin](http://purl.obolibrary.org/obo/UBERON_2001058) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:4000164" + +#### Added +- [obsolete caudal fin](http://purl.obolibrary.org/obo/UBERON_2001058) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [caudal fin](http://purl.obolibrary.org/obo/UBERON_4000164) + + +### obsolete caudal fin lepidotrichium `http://purl.obolibrary.org/obo/UBERON_2001550` +#### Removed +- [obsolete caudal fin lepidotrichium](http://purl.obolibrary.org/obo/UBERON_2001550) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:4000174" + +#### Added +- [obsolete caudal fin lepidotrichium](http://purl.obolibrary.org/obo/UBERON_2001550) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [caudal fin lepidotrichium](http://purl.obolibrary.org/obo/UBERON_4000174) + + +### obsolete caudal fin skeleton `http://purl.obolibrary.org/obo/UBERON_2000862` +#### Removed +- [obsolete caudal fin skeleton](http://purl.obolibrary.org/obo/UBERON_2000862) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:4000167" + +#### Added +- [obsolete caudal fin skeleton](http://purl.obolibrary.org/obo/UBERON_2000862) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [caudal fin skeleton](http://purl.obolibrary.org/obo/UBERON_4000167) + + +### obsolete cavity lining `http://purl.obolibrary.org/obo/UBERON_0004457` +#### Removed +- [obsolete cavity lining](http://purl.obolibrary.org/obo/UBERON_0004457) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0000042" + +#### Added +- [obsolete cavity lining](http://purl.obolibrary.org/obo/UBERON_0004457) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [serous membrane](http://purl.obolibrary.org/obo/UBERON_0000042) + + +### obsolete cell body `http://purl.obolibrary.org/obo/UBERON_0001022` +#### Removed +- [obsolete cell body](http://purl.obolibrary.org/obo/UBERON_0001022) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NIF_Subcellular:sao1044911821" + +- [obsolete cell body](http://purl.obolibrary.org/obo/UBERON_0001022) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00005107" + +- [obsolete cell body](http://purl.obolibrary.org/obo/UBERON_0001022) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GO:0043025" + +- [obsolete cell body](http://purl.obolibrary.org/obo/UBERON_0001022) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:67301" + +#### Added +- [obsolete cell body](http://purl.obolibrary.org/obo/UBERON_0001022) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NIF_Subcellular_sao1044911821](http://purl.obolibrary.org/obo/NIF_Subcellular_sao1044911821) + +- [obsolete cell body](http://purl.obolibrary.org/obo/UBERON_0001022) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00005107](http://purl.obolibrary.org/obo/FBbt_00005107) + +- [obsolete cell body](http://purl.obolibrary.org/obo/UBERON_0001022) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GO_0043025](http://purl.obolibrary.org/obo/GO_0043025) + +- [obsolete cell body](http://purl.obolibrary.org/obo/UBERON_0001022) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_67301](http://purl.obolibrary.org/obo/FMA_67301) + + +### obsolete cell part `http://purl.obolibrary.org/obo/UBERON_0000470` +#### Removed +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "OpenCyc:Mx4rwQwkcZwpEbGdrcN5Y29ycA" + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000014" + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "AAO:0010271" + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NIF_Subcellular:sao-1337158144" + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GO:0044464" + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NCIT:C34070" + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00007012" + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:86454" + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "CARO:0000014" + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BILA:0000014" + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UMLS:C1178969" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "ncithesaurus:Cell_Part" + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "TGMA:0001834" + +#### Added +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [CARO_0000014](http://purl.obolibrary.org/obo/CARO_0000014) + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_86454](http://purl.obolibrary.org/obo/FMA_86454) + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [OpenCyc_Mx4rwQwkcZwpEbGdrcN5Y29ycA](http://purl.obolibrary.org/obo/OpenCyc_Mx4rwQwkcZwpEbGdrcN5Y29ycA) + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00007012](http://purl.obolibrary.org/obo/FBbt_00007012) + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GO_0044464](http://purl.obolibrary.org/obo/GO_0044464) + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [UMLS_C1178969](http://purl.obolibrary.org/obo/UMLS_C1178969) + - [source](http://www.geneontology.org/formats/oboInOwl#source) "ncithesaurus:Cell_Part" + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [AAO_0010271](http://purl.obolibrary.org/obo/AAO_0010271) + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000014](http://purl.obolibrary.org/obo/HAO_0000014) + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NIF_Subcellular_sao-1337158144](http://purl.obolibrary.org/obo/NIF_Subcellular_sao-1337158144) + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NCIT_C34070](http://purl.obolibrary.org/obo/NCIT_C34070) + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [TGMA_0001834](http://purl.obolibrary.org/obo/TGMA_0001834) + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BILA_0000014](http://purl.obolibrary.org/obo/BILA_0000014) + + +### obsolete cellular lens `http://purl.obolibrary.org/obo/UBERON_0000208` +#### Removed +- [obsolete cellular lens](http://purl.obolibrary.org/obo/UBERON_0000208) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0000965" + +#### Added +- [obsolete cellular lens](http://purl.obolibrary.org/obo/UBERON_0000208) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [lens of camera-type eye](http://purl.obolibrary.org/obo/UBERON_0000965) + + +### obsolete central nervous system cranial ganglion `http://purl.obolibrary.org/obo/UBERON_0005706` +#### Removed +- [obsolete central nervous system cranial ganglion](http://purl.obolibrary.org/obo/UBERON_0005706) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EHDAA:920" + +- [obsolete central nervous system cranial ganglion](http://purl.obolibrary.org/obo/UBERON_0005706) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0001714" + +- [obsolete central nervous system cranial ganglion](http://purl.obolibrary.org/obo/UBERON_0005706) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EHDAA2:0000226" + +#### Added +- [obsolete central nervous system cranial ganglion](http://purl.obolibrary.org/obo/UBERON_0005706) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EHDAA_920](http://purl.obolibrary.org/obo/EHDAA_920) + +- [obsolete central nervous system cranial ganglion](http://purl.obolibrary.org/obo/UBERON_0005706) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EHDAA2_0000226](http://purl.obolibrary.org/obo/EHDAA2_0000226) + +- [obsolete central nervous system cranial ganglion](http://purl.obolibrary.org/obo/UBERON_0005706) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [cranial ganglion](http://purl.obolibrary.org/obo/UBERON_0001714) + + +### obsolete cerebral cortex mantle layer `http://purl.obolibrary.org/obo/UBERON_0014934` +#### Removed +- [obsolete cerebral cortex mantle layer](http://purl.obolibrary.org/obo/UBERON_0014934) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0004040" + +#### Added +- [obsolete cerebral cortex mantle layer](http://purl.obolibrary.org/obo/UBERON_0014934) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [cortical intermediate zone](http://purl.obolibrary.org/obo/UBERON_0004040) + + +### obsolete cerebrum `http://purl.obolibrary.org/obo/UBERON_0035955` +#### Removed +- [obsolete cerebrum](http://purl.obolibrary.org/obo/UBERON_0035955) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "neuronames:2068" + +- [obsolete cerebrum](http://purl.obolibrary.org/obo/UBERON_0035955) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0001869" + +- [obsolete cerebrum](http://purl.obolibrary.org/obo/UBERON_0035955) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0001893" + +#### Added +- [obsolete cerebrum](http://purl.obolibrary.org/obo/UBERON_0035955) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [neuronames_2068](http://purl.obolibrary.org/obo/neuronames_2068) + +- [obsolete cerebrum](http://purl.obolibrary.org/obo/UBERON_0035955) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [telencephalon](http://purl.obolibrary.org/obo/UBERON_0001893) + +- [obsolete cerebrum](http://purl.obolibrary.org/obo/UBERON_0035955) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [cerebral hemisphere](http://purl.obolibrary.org/obo/UBERON_0001869) + + +### obsolete cervical rib `http://purl.obolibrary.org/obo/UBERON_0018311` +#### Removed +- [obsolete cervical rib](http://purl.obolibrary.org/obo/UBERON_0018311) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0018144" + +#### Added +- [obsolete cervical rib](http://purl.obolibrary.org/obo/UBERON_0018311) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [cervical rib](http://purl.obolibrary.org/obo/UBERON_0018144) + + +### obsolete cervical sclerite `http://purl.obolibrary.org/obo/UBERON_0003169` +#### Removed +- [obsolete cervical sclerite](http://purl.obolibrary.org/obo/UBERON_0003169) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000195" + +- [obsolete cervical sclerite](http://purl.obolibrary.org/obo/UBERON_0003169) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004548" + +#### Added +- [obsolete cervical sclerite](http://purl.obolibrary.org/obo/UBERON_0003169) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000195](http://purl.obolibrary.org/obo/HAO_0000195) + +- [obsolete cervical sclerite](http://purl.obolibrary.org/obo/UBERON_0003169) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004548](http://purl.obolibrary.org/obo/FBbt_00004548) + + +### obsolete cervical trunk `http://purl.obolibrary.org/obo/UBERON_0005201` +#### Removed +- [obsolete cervical trunk](http://purl.obolibrary.org/obo/UBERON_0005201) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MA:0001937" + +#### Added +- [obsolete cervical trunk](http://purl.obolibrary.org/obo/UBERON_0005201) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MA_0001937](http://purl.obolibrary.org/obo/MA_0001937) + + +### obsolete cestode `http://purl.obolibrary.org/obo/UBERON_0018387` +#### Removed +- [obsolete cestode](http://purl.obolibrary.org/obo/UBERON_0018387) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "NCBITaxon:6199" + +#### Added +- [obsolete cestode](http://purl.obolibrary.org/obo/UBERON_0018387) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [NCBITaxon_6199](http://purl.obolibrary.org/obo/NCBITaxon_6199) + + +### obsolete chondrocranium bone `http://purl.obolibrary.org/obo/UBERON_0003465` +#### Removed +- [obsolete chondrocranium bone](http://purl.obolibrary.org/obo/UBERON_0003465) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0011164" + +#### Added +- [obsolete chondrocranium bone](http://purl.obolibrary.org/obo/UBERON_0003465) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [neurocranium bone](http://purl.obolibrary.org/obo/UBERON_0011164) + + +### obsolete chondrocyte `http://purl.obolibrary.org/obo/UBERON_3010286` +#### Removed +- [obsolete chondrocyte](http://purl.obolibrary.org/obo/UBERON_3010286) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000138" + +#### Added +- [obsolete chondrocyte](http://purl.obolibrary.org/obo/UBERON_3010286) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000138](http://purl.obolibrary.org/obo/CL_0000138) + + +### obsolete chordablast `http://purl.obolibrary.org/obo/UBERON_4000019` +#### Removed +- [obsolete chordablast](http://purl.obolibrary.org/obo/UBERON_4000019) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0007008" + +#### Added +- [obsolete chordablast](http://purl.obolibrary.org/obo/UBERON_4000019) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0007008](http://purl.obolibrary.org/obo/CL_0007008) + + +### obsolete chordoblast `http://purl.obolibrary.org/obo/UBERON_4000039` +#### Removed +- [obsolete chordoblast](http://purl.obolibrary.org/obo/UBERON_4000039) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0007008" + +#### Added +- [obsolete chordoblast](http://purl.obolibrary.org/obo/UBERON_4000039) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0007008](http://purl.obolibrary.org/obo/CL_0007008) + + +### obsolete cibarium `http://purl.obolibrary.org/obo/UBERON_0003165` +#### Removed +- [obsolete cibarium](http://purl.obolibrary.org/obo/UBERON_0003165) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004526" + +- [obsolete cibarium](http://purl.obolibrary.org/obo/UBERON_0003165) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000201" + +#### Added +- [obsolete cibarium](http://purl.obolibrary.org/obo/UBERON_0003165) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004526](http://purl.obolibrary.org/obo/FBbt_00004526) + +- [obsolete cibarium](http://purl.obolibrary.org/obo/UBERON_0003165) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000201](http://purl.obolibrary.org/obo/HAO_0000201) + + +### obsolete ciliary body `http://purl.obolibrary.org/obo/UBERON_2001203` +#### Removed +- [obsolete ciliary body](http://purl.obolibrary.org/obo/UBERON_2001203) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0001775" + +#### Added +- [obsolete ciliary body](http://purl.obolibrary.org/obo/UBERON_2001203) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [ciliary body](http://purl.obolibrary.org/obo/UBERON_0001775) + + +### obsolete ciliated cell `http://purl.obolibrary.org/obo/UBERON_3010287` +#### Removed +- [obsolete ciliated cell](http://purl.obolibrary.org/obo/UBERON_3010287) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000064" + +#### Added +- [obsolete ciliated cell](http://purl.obolibrary.org/obo/UBERON_3010287) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000064](http://purl.obolibrary.org/obo/CL_0000064) + + +### obsolete circumpennate `http://purl.obolibrary.org/obo/UBERON_0001364` +#### Removed +- [obsolete circumpennate](http://purl.obolibrary.org/obo/UBERON_0001364) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:21431" + +- [obsolete circumpennate](http://purl.obolibrary.org/obo/UBERON_0001364) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "ZFA:0000271" + +#### Added +- [obsolete circumpennate](http://purl.obolibrary.org/obo/UBERON_0001364) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_21431](http://purl.obolibrary.org/obo/FMA_21431) + +- [obsolete circumpennate](http://purl.obolibrary.org/obo/UBERON_0001364) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ZFA_0000271](http://purl.obolibrary.org/obo/ZFA_0000271) + + +### obsolete clypeus `http://purl.obolibrary.org/obo/UBERON_0003164` +#### Removed +- [obsolete clypeus](http://purl.obolibrary.org/obo/UBERON_0003164) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004521" + +- [obsolete clypeus](http://purl.obolibrary.org/obo/UBERON_0003164) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000212" + +#### Added +- [obsolete clypeus](http://purl.obolibrary.org/obo/UBERON_0003164) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004521](http://purl.obolibrary.org/obo/FBbt_00004521) + +- [obsolete clypeus](http://purl.obolibrary.org/obo/UBERON_0003164) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000212](http://purl.obolibrary.org/obo/HAO_0000212) + + +### obsolete coffin bone `http://purl.obolibrary.org/obo/UBERON_0009554` +#### Removed +- [obsolete coffin bone](http://purl.obolibrary.org/obo/UBERON_0009554) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0014485" + +#### Added +- [obsolete coffin bone](http://purl.obolibrary.org/obo/UBERON_0009554) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [distal phalanx of digit 3](http://purl.obolibrary.org/obo/UBERON_0014485) + + +### obsolete coffin joint `http://purl.obolibrary.org/obo/UBERON_0009557` +#### Removed +- [obsolete coffin joint](http://purl.obolibrary.org/obo/UBERON_0009557) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0009768" + +#### Added +- [obsolete coffin joint](http://purl.obolibrary.org/obo/UBERON_0009557) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [distal interphalangeal joint](http://purl.obolibrary.org/obo/UBERON_0009768) + + +### obsolete common crus `http://purl.obolibrary.org/obo/UBERON_2005411` +#### Removed +- [obsolete common crus](http://purl.obolibrary.org/obo/UBERON_2005411) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0013764" + +#### Added +- [obsolete common crus](http://purl.obolibrary.org/obo/UBERON_2005411) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [common crus of semicircular duct](http://purl.obolibrary.org/obo/UBERON_0013764) + + +### obsolete connective tissue proper `http://purl.obolibrary.org/obo/UBERON_3000099` +#### Removed +- [obsolete connective tissue proper](http://purl.obolibrary.org/obo/UBERON_3000099) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0002384" + +#### Added +- [obsolete connective tissue proper](http://purl.obolibrary.org/obo/UBERON_3000099) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [connective tissue](http://purl.obolibrary.org/obo/UBERON_0002384) + + +### obsolete corpus epididymis `http://purl.obolibrary.org/obo/UBERON_0005189` +#### Removed +- [obsolete corpus epididymis](http://purl.obolibrary.org/obo/UBERON_0005189) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0004359" + +#### Added +- [obsolete corpus epididymis](http://purl.obolibrary.org/obo/UBERON_0005189) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [corpus epididymis](http://purl.obolibrary.org/obo/UBERON_0004359) + + +### obsolete costal cell `http://purl.obolibrary.org/obo/UBERON_0003197` +#### Removed +- [obsolete costal cell](http://purl.obolibrary.org/obo/UBERON_0003197) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004770" + +- [obsolete costal cell](http://purl.obolibrary.org/obo/UBERON_0003197) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000226" + +#### Added +- [obsolete costal cell](http://purl.obolibrary.org/obo/UBERON_0003197) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004770](http://purl.obolibrary.org/obo/FBbt_00004770) + +- [obsolete costal cell](http://purl.obolibrary.org/obo/UBERON_0003197) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000226](http://purl.obolibrary.org/obo/HAO_0000226) + + +### obsolete coxa `http://purl.obolibrary.org/obo/UBERON_0003186` +#### Removed +- [obsolete coxa](http://purl.obolibrary.org/obo/UBERON_0003186) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004641" + +- [obsolete coxa](http://purl.obolibrary.org/obo/UBERON_0003186) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000228" + +#### Added +- [obsolete coxa](http://purl.obolibrary.org/obo/UBERON_0003186) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004641](http://purl.obolibrary.org/obo/FBbt_00004641) + +- [obsolete coxa](http://purl.obolibrary.org/obo/UBERON_0003186) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000228](http://purl.obolibrary.org/obo/HAO_0000228) + + +### obsolete cranial muscle `http://purl.obolibrary.org/obo/UBERON_2001953` +#### Removed +- [obsolete cranial muscle](http://purl.obolibrary.org/obo/UBERON_2001953) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0002376" + +#### Added +- [obsolete cranial muscle](http://purl.obolibrary.org/obo/UBERON_2001953) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [cranial muscle](http://purl.obolibrary.org/obo/UBERON_0002376) + + +### obsolete craniofacial region `http://purl.obolibrary.org/obo/UBERON_0010324` +#### Removed +- [obsolete craniofacial region](http://purl.obolibrary.org/obo/UBERON_0010324) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0001456" + +#### Added +- [obsolete craniofacial region](http://purl.obolibrary.org/obo/UBERON_0010324) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [face](http://purl.obolibrary.org/obo/UBERON_0001456) + + +### obsolete craniofacial skeleton `http://purl.obolibrary.org/obo/UBERON_0010325` +#### Removed +- [obsolete craniofacial skeleton](http://purl.obolibrary.org/obo/UBERON_0010325) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0011156" + +#### Added +- [obsolete craniofacial skeleton](http://purl.obolibrary.org/obo/UBERON_0010325) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [facial skeleton](http://purl.obolibrary.org/obo/UBERON_0011156) + + +### obsolete crossvein `http://purl.obolibrary.org/obo/UBERON_0003195` +#### Removed +- [obsolete crossvein](http://purl.obolibrary.org/obo/UBERON_0003195) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004765" + +- [obsolete crossvein](http://purl.obolibrary.org/obo/UBERON_0003195) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000236" + +#### Added +- [obsolete crossvein](http://purl.obolibrary.org/obo/UBERON_0003195) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000236](http://purl.obolibrary.org/obo/HAO_0000236) + +- [obsolete crossvein](http://purl.obolibrary.org/obo/UBERON_0003195) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004765](http://purl.obolibrary.org/obo/FBbt_00004765) + + +### obsolete cytoarchitectural part of cerebral cortex `http://purl.obolibrary.org/obo/UBERON_0023294` +#### Removed +- [obsolete cytoarchitectural part of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0023294) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2546" + +#### Added +- [obsolete cytoarchitectural part of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0023294) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2546](http://purl.obolibrary.org/obo/BIRNLEX_2546) + + +### obsolete cytoarchitectural part of dorsal cochlear nucleus `http://purl.obolibrary.org/obo/UBERON_0027376` +#### Removed +- [obsolete cytoarchitectural part of dorsal cochlear nucleus](http://purl.obolibrary.org/obo/UBERON_0027376) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:20090511" + +#### Added +- [obsolete cytoarchitectural part of dorsal cochlear nucleus](http://purl.obolibrary.org/obo/UBERON_0027376) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_20090511](http://purl.obolibrary.org/obo/NLXANAT_20090511) + + +### obsolete cytoarchitectural part of dorsal tegmental nucleus `http://purl.obolibrary.org/obo/UBERON_0024086` +#### Removed +- [obsolete cytoarchitectural part of dorsal tegmental nucleus](http://purl.obolibrary.org/obo/UBERON_0024086) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:20090406" + +#### Added +- [obsolete cytoarchitectural part of dorsal tegmental nucleus](http://purl.obolibrary.org/obo/UBERON_0024086) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_20090406](http://purl.obolibrary.org/obo/NLXANAT_20090406) + + +### obsolete cytoarchitectural part of frontal lobe `http://purl.obolibrary.org/obo/UBERON_0025148` +#### Removed +- [obsolete cytoarchitectural part of frontal lobe](http://purl.obolibrary.org/obo/UBERON_0025148) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:4066" + +#### Added +- [obsolete cytoarchitectural part of frontal lobe](http://purl.obolibrary.org/obo/UBERON_0025148) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_4066](http://purl.obolibrary.org/obo/BIRNLEX_4066) + + +### obsolete cytoarchitectural part of occipital lobe `http://purl.obolibrary.org/obo/UBERON_0025147` +#### Removed +- [obsolete cytoarchitectural part of occipital lobe](http://purl.obolibrary.org/obo/UBERON_0025147) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:4065" + +#### Added +- [obsolete cytoarchitectural part of occipital lobe](http://purl.obolibrary.org/obo/UBERON_0025147) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_4065](http://purl.obolibrary.org/obo/BIRNLEX_4065) + + +### obsolete cytoarchitectural part of retina `http://purl.obolibrary.org/obo/UBERON_0027227` +#### Removed +- [obsolete cytoarchitectural part of retina](http://purl.obolibrary.org/obo/UBERON_0027227) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:1005029" + +#### Added +- [obsolete cytoarchitectural part of retina](http://purl.obolibrary.org/obo/UBERON_0027227) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_1005029](http://purl.obolibrary.org/obo/NLXANAT_1005029) + + +### obsolete cytoarchitectural part of the cerebellum `http://purl.obolibrary.org/obo/UBERON_0023827` +#### Removed +- [obsolete cytoarchitectural part of the cerebellum](http://purl.obolibrary.org/obo/UBERON_0023827) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:987" + +#### Added +- [obsolete cytoarchitectural part of the cerebellum](http://purl.obolibrary.org/obo/UBERON_0023827) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_987](http://purl.obolibrary.org/obo/BIRNLEX_987) + + +### obsolete cytotrophoblastic cell `http://purl.obolibrary.org/obo/UBERON_0000427` +#### Removed +- [obsolete cytotrophoblastic cell](http://purl.obolibrary.org/obo/UBERON_0000427) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NCIT:C38575" + +#### Added +- [obsolete cytotrophoblastic cell](http://purl.obolibrary.org/obo/UBERON_0000427) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NCIT_C38575](http://purl.obolibrary.org/obo/NCIT_C38575) + + +### obsolete decidual cell `http://purl.obolibrary.org/obo/UBERON_0000449` +#### Removed +- [obsolete decidual cell](http://purl.obolibrary.org/obo/UBERON_0000449) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NCIT:C32429" + +- [obsolete decidual cell](http://purl.obolibrary.org/obo/UBERON_0000449) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:86480" + +- [obsolete decidual cell](http://purl.obolibrary.org/obo/UBERON_0000449) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UMLS:C1511740" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "ncithesaurus:Decidual_Cell" + +- [obsolete decidual cell](http://purl.obolibrary.org/obo/UBERON_0000449) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BTO:0002770" + +- [obsolete decidual cell](http://purl.obolibrary.org/obo/UBERON_0000449) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:2000002" + +#### Added +- [obsolete decidual cell](http://purl.obolibrary.org/obo/UBERON_0000449) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_2000002](http://purl.obolibrary.org/obo/CL_2000002) + +- [obsolete decidual cell](http://purl.obolibrary.org/obo/UBERON_0000449) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BTO_0002770](http://purl.obolibrary.org/obo/BTO_0002770) + +- [obsolete decidual cell](http://purl.obolibrary.org/obo/UBERON_0000449) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [UMLS_C1511740](http://purl.obolibrary.org/obo/UMLS_C1511740) + - [source](http://www.geneontology.org/formats/oboInOwl#source) "ncithesaurus:Decidual_Cell" + +- [obsolete decidual cell](http://purl.obolibrary.org/obo/UBERON_0000449) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_86480](http://purl.obolibrary.org/obo/FMA_86480) + +- [obsolete decidual cell](http://purl.obolibrary.org/obo/UBERON_0000449) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NCIT_C32429](http://purl.obolibrary.org/obo/NCIT_C32429) + + +### obsolete deep blastomere `http://purl.obolibrary.org/obo/UBERON_2001473` +#### Removed +- [obsolete deep blastomere](http://purl.obolibrary.org/obo/UBERON_2001473) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "ZFA:0001473" + +#### Added +- [obsolete deep blastomere](http://purl.obolibrary.org/obo/UBERON_2001473) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [ZFA_0001473](http://purl.obolibrary.org/obo/ZFA_0001473) + + +### obsolete deep vein of penis `http://purl.obolibrary.org/obo/UBERON_0039267` +#### Removed +- [obsolete deep vein of penis](http://purl.obolibrary.org/obo/UBERON_0039267) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0006656" + +#### Added +- [obsolete deep vein of penis](http://purl.obolibrary.org/obo/UBERON_0039267) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [deep dorsal vein of penis](http://purl.obolibrary.org/obo/UBERON_0006656) + + +### obsolete deltopectoral crest `http://purl.obolibrary.org/obo/UBERON_3000736` +#### Removed +- [obsolete deltopectoral crest](http://purl.obolibrary.org/obo/UBERON_3000736) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0002498" + +#### Added +- [obsolete deltopectoral crest](http://purl.obolibrary.org/obo/UBERON_3000736) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [deltopectoral crest](http://purl.obolibrary.org/obo/UBERON_0002498) + + +### obsolete dendrite `http://purl.obolibrary.org/obo/UBERON_0001023` +#### Removed +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NIF_Subcellular:sao1211023249" + +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NCIT:C32447" + +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:67314" + +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UMLS:C0011305" + +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GO:0030425" + +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "TGMA:0001373" + +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "OpenCyc:Mx4rviIdspwpEbGdrcN5Y29ycA" + +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MESH:A08.663.256" + +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00005110" + +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GAID:749" + +#### Added +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NIF_Subcellular_sao1211023249](http://purl.obolibrary.org/obo/NIF_Subcellular_sao1211023249) + +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GAID_749](http://purl.obolibrary.org/obo/GAID_749) + +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [TGMA_0001373](http://purl.obolibrary.org/obo/TGMA_0001373) + +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [UMLS_C0011305](http://purl.obolibrary.org/obo/UMLS_C0011305) + +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [OpenCyc_Mx4rviIdspwpEbGdrcN5Y29ycA](http://purl.obolibrary.org/obo/OpenCyc_Mx4rviIdspwpEbGdrcN5Y29ycA) + +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_67314](http://purl.obolibrary.org/obo/FMA_67314) + +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NCIT_C32447](http://purl.obolibrary.org/obo/NCIT_C32447) + +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GO_0030425](http://purl.obolibrary.org/obo/GO_0030425) + +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00005110](http://purl.obolibrary.org/obo/FBbt_00005110) + +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MESH_A08.663.256](http://purl.obolibrary.org/obo/MESH_A08.663.256) + + +### obsolete dense connective tissue `http://purl.obolibrary.org/obo/UBERON_3000121` +#### Removed +- [obsolete dense connective tissue](http://purl.obolibrary.org/obo/UBERON_3000121) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0011823" + +#### Added +- [obsolete dense connective tissue](http://purl.obolibrary.org/obo/UBERON_3000121) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [dense connective tissue](http://purl.obolibrary.org/obo/UBERON_0011823) + + +### obsolete developing epithelial placode `http://purl.obolibrary.org/obo/UBERON_0007497` +#### Removed +- [obsolete developing epithelial placode](http://purl.obolibrary.org/obo/UBERON_0007497) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0005085" + +#### Added +- [obsolete developing epithelial placode](http://purl.obolibrary.org/obo/UBERON_0007497) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [ectodermal placode](http://purl.obolibrary.org/obo/UBERON_0005085) + + +### obsolete developing esophageal region `http://purl.obolibrary.org/obo/UBERON_0009143` +#### Removed +- [obsolete developing esophageal region](http://purl.obolibrary.org/obo/UBERON_0009143) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0001043" + +#### Added +- [obsolete developing esophageal region](http://purl.obolibrary.org/obo/UBERON_0009143) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [esophagus](http://purl.obolibrary.org/obo/UBERON_0001043) + + +### obsolete direct ossification `http://purl.obolibrary.org/obo/UBERON_4000136` +#### Removed +- [obsolete direct ossification](http://purl.obolibrary.org/obo/UBERON_4000136) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "GO:0036072" + +#### Added +- [obsolete direct ossification](http://purl.obolibrary.org/obo/UBERON_4000136) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [GO_0036072](http://purl.obolibrary.org/obo/GO_0036072) + + +### obsolete distal articular surface of radius `http://purl.obolibrary.org/obo/UBERON_7500088` +#### Removed +- [obsolete distal articular surface of radius](http://purl.obolibrary.org/obo/UBERON_7500088) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:7500080" + +#### Added +- [obsolete distal articular surface of radius](http://purl.obolibrary.org/obo/UBERON_7500088) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [articular surface for carpals](http://purl.obolibrary.org/obo/UBERON_7500080) + + +### obsolete distal-most point of medial condyle of femur `http://purl.obolibrary.org/obo/UBERON_7500033` +#### Removed +- [obsolete distal-most point of medial condyle of femur](http://purl.obolibrary.org/obo/UBERON_7500033) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Knee_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [obsolete distal-most point of medial condyle of femur](http://purl.obolibrary.org/obo/UBERON_7500033) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Knee_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [obsolete distal-most point of medial condyle of femur](http://purl.obolibrary.org/obo/UBERON_7500033) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0009984" + +- [obsolete distal-most point of medial condyle of femur](http://purl.obolibrary.org/obo/UBERON_7500033) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Knee_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [obsolete distal-most point of medial condyle of femur](http://purl.obolibrary.org/obo/UBERON_7500033) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Knee_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [obsolete distal-most point of medial condyle of femur](http://purl.obolibrary.org/obo/UBERON_7500033) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [medial condyle of femur](http://purl.obolibrary.org/obo/UBERON_0009984) + + +### obsolete distal-most point of trochlea of humerus `http://purl.obolibrary.org/obo/UBERON_7500034` +#### Removed +- [obsolete distal-most point of trochlea of humerus](http://purl.obolibrary.org/obo/UBERON_7500034) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0000144" + +#### Added +- [obsolete distal-most point of trochlea of humerus](http://purl.obolibrary.org/obo/UBERON_7500034) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [trochlea of humerus](http://purl.obolibrary.org/obo/UBERON_0000144) + + +### obsolete dorsal branch `http://purl.obolibrary.org/obo/UBERON_0000944` +#### Removed +- [obsolete dorsal branch](http://purl.obolibrary.org/obo/UBERON_0000944) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00003051" + +- [obsolete dorsal branch](http://purl.obolibrary.org/obo/UBERON_0000944) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:76733" + +#### Added +- [obsolete dorsal branch](http://purl.obolibrary.org/obo/UBERON_0000944) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00003051](http://purl.obolibrary.org/obo/FBbt_00003051) + +- [obsolete dorsal branch](http://purl.obolibrary.org/obo/UBERON_0000944) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_76733](http://purl.obolibrary.org/obo/FMA_76733) + + +### obsolete dorsal fin lepidotrichium `http://purl.obolibrary.org/obo/UBERON_2001418` +#### Removed +- [obsolete dorsal fin lepidotrichium](http://purl.obolibrary.org/obo/UBERON_2001418) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:4000177" + +#### Added +- [obsolete dorsal fin lepidotrichium](http://purl.obolibrary.org/obo/UBERON_2001418) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [dorsal fin lepidotrichium](http://purl.obolibrary.org/obo/UBERON_4000177) + + +### obsolete dorsal fin skeleton `http://purl.obolibrary.org/obo/UBERON_2001124` +#### Removed +- [obsolete dorsal fin skeleton](http://purl.obolibrary.org/obo/UBERON_2001124) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:4000168" + +#### Added +- [obsolete dorsal fin skeleton](http://purl.obolibrary.org/obo/UBERON_2001124) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [dorsal fin skeleton](http://purl.obolibrary.org/obo/UBERON_4000168) + + +### obsolete dorsal nucleus `http://purl.obolibrary.org/obo/UBERON_2000197` +#### Removed +- [obsolete dorsal nucleus](http://purl.obolibrary.org/obo/UBERON_2000197) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0008993" + +- [obsolete dorsal nucleus](http://purl.obolibrary.org/obo/UBERON_2000197) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "ZFA:0000197" + +#### Added +- [obsolete dorsal nucleus](http://purl.obolibrary.org/obo/UBERON_2000197) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [habenular nucleus](http://purl.obolibrary.org/obo/UBERON_0008993) + +- [obsolete dorsal nucleus](http://purl.obolibrary.org/obo/UBERON_2000197) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ZFA_0000197](http://purl.obolibrary.org/obo/ZFA_0000197) + + +### obsolete dorsal ramus of occulomotor nerve `http://purl.obolibrary.org/obo/UBERON_3010628` +#### Removed +- [obsolete dorsal ramus of occulomotor nerve](http://purl.obolibrary.org/obo/UBERON_3010628) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0015162" + +#### Added +- [obsolete dorsal ramus of occulomotor nerve](http://purl.obolibrary.org/obo/UBERON_3010628) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [superior branch of oculomotor nerve](http://purl.obolibrary.org/obo/UBERON_0015162) + + +### obsolete duct part of cochlear canal `http://purl.obolibrary.org/obo/UBERON_0024952` +#### Removed +- [obsolete duct part of cochlear canal](http://purl.obolibrary.org/obo/UBERON_0024952) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0001855" + +- [obsolete duct part of cochlear canal](http://purl.obolibrary.org/obo/UBERON_0024952) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2560" + +#### Added +- [obsolete duct part of cochlear canal](http://purl.obolibrary.org/obo/UBERON_0024952) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [cochlear duct of membranous labyrinth](http://purl.obolibrary.org/obo/UBERON_0001855) + +- [obsolete duct part of cochlear canal](http://purl.obolibrary.org/obo/UBERON_0024952) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2560](http://purl.obolibrary.org/obo/BIRNLEX_2560) + + +### obsolete ectodermal cell `http://purl.obolibrary.org/obo/UBERON_3010554` +#### Removed +- [obsolete ectodermal cell](http://purl.obolibrary.org/obo/UBERON_3010554) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000221" + +#### Added +- [obsolete ectodermal cell](http://purl.obolibrary.org/obo/UBERON_3010554) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000221](http://purl.obolibrary.org/obo/CL_0000221) + + +### obsolete embryoid body `http://purl.obolibrary.org/obo/UBERON_0010263` +#### Removed +- [obsolete embryoid body](http://purl.obolibrary.org/obo/UBERON_0010263) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BTO:0001718" + +#### Added +- [obsolete embryoid body](http://purl.obolibrary.org/obo/UBERON_0010263) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BTO_0001718](http://purl.obolibrary.org/obo/BTO_0001718) + + +### obsolete embryonic germ layer derivative `http://purl.obolibrary.org/obo/UBERON_6000000` +#### Removed +- [obsolete embryonic germ layer derivative](http://purl.obolibrary.org/obo/UBERON_6000000) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00000000" + +#### Added +- [obsolete embryonic germ layer derivative](http://purl.obolibrary.org/obo/UBERON_6000000) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00000000](http://purl.obolibrary.org/obo/FBbt_00000000) + + +### obsolete embryonic hypochord `http://purl.obolibrary.org/obo/UBERON_3010625` +#### Removed +- [obsolete embryonic hypochord](http://purl.obolibrary.org/obo/UBERON_3010625) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0003058" + +#### Added +- [obsolete embryonic hypochord](http://purl.obolibrary.org/obo/UBERON_3010625) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [hypochord](http://purl.obolibrary.org/obo/UBERON_0003058) + + +### obsolete embryonic segment `http://purl.obolibrary.org/obo/UBERON_0000928` +#### Removed +- [obsolete embryonic segment](http://purl.obolibrary.org/obo/UBERON_0000928) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MAT:0000244" + +- [obsolete embryonic segment](http://purl.obolibrary.org/obo/UBERON_0000928) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MIAA:0000244" + +- [obsolete embryonic segment](http://purl.obolibrary.org/obo/UBERON_0000928) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00000154" + +#### Added +- [obsolete embryonic segment](http://purl.obolibrary.org/obo/UBERON_0000928) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00000154](http://purl.obolibrary.org/obo/FBbt_00000154) + +- [obsolete embryonic segment](http://purl.obolibrary.org/obo/UBERON_0000928) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MAT_0000244](http://purl.obolibrary.org/obo/MAT_0000244) + +- [obsolete embryonic segment](http://purl.obolibrary.org/obo/UBERON_0000928) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MIAA_0000244](http://purl.obolibrary.org/obo/MIAA_0000244) + + +### obsolete empodium `http://purl.obolibrary.org/obo/UBERON_0003190` +#### Removed +- [obsolete empodium](http://purl.obolibrary.org/obo/UBERON_0003190) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000288" + +- [obsolete empodium](http://purl.obolibrary.org/obo/UBERON_0003190) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004659" + +#### Added +- [obsolete empodium](http://purl.obolibrary.org/obo/UBERON_0003190) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004659](http://purl.obolibrary.org/obo/FBbt_00004659) + +- [obsolete empodium](http://purl.obolibrary.org/obo/UBERON_0003190) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000288](http://purl.obolibrary.org/obo/HAO_0000288) + + +### obsolete enameloid `http://purl.obolibrary.org/obo/UBERON_2005142` +#### Removed +- [obsolete enameloid](http://purl.obolibrary.org/obo/UBERON_2005142) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0011692" + +#### Added +- [obsolete enameloid](http://purl.obolibrary.org/obo/UBERON_2005142) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [enameloid](http://purl.obolibrary.org/obo/UBERON_0011692) + + +### obsolete endochondral ossification `http://purl.obolibrary.org/obo/UBERON_4000143` +#### Removed +- [obsolete endochondral ossification](http://purl.obolibrary.org/obo/UBERON_4000143) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "GO:0001958" + +#### Added +- [obsolete endochondral ossification](http://purl.obolibrary.org/obo/UBERON_4000143) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [GO_0001958](http://purl.obolibrary.org/obo/GO_0001958) + + +### obsolete endocrine system component `http://purl.obolibrary.org/obo/UBERON_6007435` +#### Removed +- [obsolete endocrine system component](http://purl.obolibrary.org/obo/UBERON_6007435) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00007435" + +#### Added +- [obsolete endocrine system component](http://purl.obolibrary.org/obo/UBERON_6007435) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00007435](http://purl.obolibrary.org/obo/FBbt_00007435) + + +### obsolete endodermal cell `http://purl.obolibrary.org/obo/UBERON_3010555` +#### Removed +- [obsolete endodermal cell](http://purl.obolibrary.org/obo/UBERON_3010555) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000223" + +#### Added +- [obsolete endodermal cell](http://purl.obolibrary.org/obo/UBERON_3010555) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000223](http://purl.obolibrary.org/obo/CL_0000223) + + +### obsolete epimeron `http://purl.obolibrary.org/obo/UBERON_0003172` +#### Removed +- [obsolete epimeron](http://purl.obolibrary.org/obo/UBERON_0003172) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004556" + +- [obsolete epimeron](http://purl.obolibrary.org/obo/UBERON_0003172) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000299" + +#### Added +- [obsolete epimeron](http://purl.obolibrary.org/obo/UBERON_0003172) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004556](http://purl.obolibrary.org/obo/FBbt_00004556) + +- [obsolete epimeron](http://purl.obolibrary.org/obo/UBERON_0003172) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000299](http://purl.obolibrary.org/obo/HAO_0000299) + + +### obsolete epipharynx `http://purl.obolibrary.org/obo/UBERON_0003204` +#### Removed +- [obsolete epipharynx](http://purl.obolibrary.org/obo/UBERON_0003204) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000301" + +- [obsolete epipharynx](http://purl.obolibrary.org/obo/UBERON_0003204) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00005750" + +#### Added +- [obsolete epipharynx](http://purl.obolibrary.org/obo/UBERON_0003204) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00005750](http://purl.obolibrary.org/obo/FBbt_00005750) + +- [obsolete epipharynx](http://purl.obolibrary.org/obo/UBERON_0003204) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000301](http://purl.obolibrary.org/obo/HAO_0000301) + + +### obsolete episternum `http://purl.obolibrary.org/obo/UBERON_0003171` +#### Removed +- [obsolete episternum](http://purl.obolibrary.org/obo/UBERON_0003171) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000303" + +- [obsolete episternum](http://purl.obolibrary.org/obo/UBERON_0003171) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004554" + +#### Added +- [obsolete episternum](http://purl.obolibrary.org/obo/UBERON_0003171) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000303](http://purl.obolibrary.org/obo/HAO_0000303) + +- [obsolete episternum](http://purl.obolibrary.org/obo/UBERON_0003171) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004554](http://purl.obolibrary.org/obo/FBbt_00004554) + + +### obsolete epithelial cell `http://purl.obolibrary.org/obo/UBERON_3010274` +#### Removed +- [obsolete epithelial cell](http://purl.obolibrary.org/obo/UBERON_3010274) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000066" + +#### Added +- [obsolete epithelial cell](http://purl.obolibrary.org/obo/UBERON_3010274) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000066](http://purl.obolibrary.org/obo/CL_0000066) + + +### obsolete equine cannon bone `http://purl.obolibrary.org/obo/UBERON_0012263` +#### Removed +- [obsolete equine cannon bone](http://purl.obolibrary.org/obo/UBERON_0012263) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0013583" + +#### Added +- [obsolete equine cannon bone](http://purl.obolibrary.org/obo/UBERON_0012263) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [metapodium bone 3](http://purl.obolibrary.org/obo/UBERON_0013583) + + +### obsolete equine forelimb cannon bone `http://purl.obolibrary.org/obo/UBERON_0012264` +#### Removed +- [obsolete equine forelimb cannon bone](http://purl.obolibrary.org/obo/UBERON_0012264) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0003647" + +#### Added +- [obsolete equine forelimb cannon bone](http://purl.obolibrary.org/obo/UBERON_0012264) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [metacarpal bone of digit 3](http://purl.obolibrary.org/obo/UBERON_0003647) + + +### obsolete equine hindlimb cannon bone `http://purl.obolibrary.org/obo/UBERON_0012265` +#### Removed +- [obsolete equine hindlimb cannon bone](http://purl.obolibrary.org/obo/UBERON_0012265) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0003652" + +#### Added +- [obsolete equine hindlimb cannon bone](http://purl.obolibrary.org/obo/UBERON_0012265) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [metatarsal bone of digit 3](http://purl.obolibrary.org/obo/UBERON_0003652) + + +### obsolete erythrophore `http://purl.obolibrary.org/obo/UBERON_3010593` +#### Removed +- [obsolete erythrophore](http://purl.obolibrary.org/obo/UBERON_3010593) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000574" + +#### Added +- [obsolete erythrophore](http://purl.obolibrary.org/obo/UBERON_3010593) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000574](http://purl.obolibrary.org/obo/CL_0000574) + + +### obsolete extracellular matrix `http://purl.obolibrary.org/obo/UBERON_4000022` +#### Removed +- [obsolete extracellular matrix](http://purl.obolibrary.org/obo/UBERON_4000022) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "GO:0031012" + +#### Added +- [obsolete extracellular matrix](http://purl.obolibrary.org/obo/UBERON_4000022) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [GO_0031012](http://purl.obolibrary.org/obo/GO_0031012) + + +### obsolete fascia dentata `http://purl.obolibrary.org/obo/UBERON_0035560` +#### Removed +- [obsolete fascia dentata](http://purl.obolibrary.org/obo/UBERON_0035560) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "neuronames:180" + +- [obsolete fascia dentata](http://purl.obolibrary.org/obo/UBERON_0035560) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0001885" + +- [obsolete fascia dentata](http://purl.obolibrary.org/obo/UBERON_0035560) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BTO:0002615" + +- [obsolete fascia dentata](http://purl.obolibrary.org/obo/UBERON_0035560) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1191" + +#### Added +- [obsolete fascia dentata](http://purl.obolibrary.org/obo/UBERON_0035560) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1191](http://purl.obolibrary.org/obo/BIRNLEX_1191) + +- [obsolete fascia dentata](http://purl.obolibrary.org/obo/UBERON_0035560) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [neuronames_180](http://purl.obolibrary.org/obo/neuronames_180) + +- [obsolete fascia dentata](http://purl.obolibrary.org/obo/UBERON_0035560) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [dentate gyrus of hippocampal formation](http://purl.obolibrary.org/obo/UBERON_0001885) + +- [obsolete fascia dentata](http://purl.obolibrary.org/obo/UBERON_0035560) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BTO_0002615](http://purl.obolibrary.org/obo/BTO_0002615) + + +### obsolete fat body `http://purl.obolibrary.org/obo/UBERON_0001014` +#### Removed +- [obsolete fat body](http://purl.obolibrary.org/obo/UBERON_0001014) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0003917" + +#### Added +- [obsolete fat body](http://purl.obolibrary.org/obo/UBERON_0001014) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [arthropod fat body](http://purl.obolibrary.org/obo/UBERON_0003917) + + +### obsolete fibroblast `http://purl.obolibrary.org/obo/UBERON_3010288` +#### Removed +- [obsolete fibroblast](http://purl.obolibrary.org/obo/UBERON_3010288) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000057" + +#### Added +- [obsolete fibroblast](http://purl.obolibrary.org/obo/UBERON_3010288) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000057](http://purl.obolibrary.org/obo/CL_0000057) + + +### obsolete first polar body `http://purl.obolibrary.org/obo/UBERON_0005444` +#### Removed +- [obsolete first polar body](http://purl.obolibrary.org/obo/UBERON_0005444) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EHDAA2:0000541" + +- [obsolete first polar body](http://purl.obolibrary.org/obo/UBERON_0005444) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:18650" + +#### Added +- [obsolete first polar body](http://purl.obolibrary.org/obo/UBERON_0005444) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EHDAA2_0000541](http://purl.obolibrary.org/obo/EHDAA2_0000541) + +- [obsolete first polar body](http://purl.obolibrary.org/obo/UBERON_0005444) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_18650](http://purl.obolibrary.org/obo/FMA_18650) + + +### obsolete follicle cell `http://purl.obolibrary.org/obo/UBERON_3010289` +#### Removed +- [obsolete follicle cell](http://purl.obolibrary.org/obo/UBERON_3010289) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000477" + +#### Added +- [obsolete follicle cell](http://purl.obolibrary.org/obo/UBERON_3010289) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000477](http://purl.obolibrary.org/obo/CL_0000477) + + +### obsolete foramen `http://purl.obolibrary.org/obo/UBERON_0003151` +#### Removed +- [obsolete foramen](http://purl.obolibrary.org/obo/UBERON_0003151) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004478" + +- [obsolete foramen](http://purl.obolibrary.org/obo/UBERON_0003151) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000345" + +#### Added +- [obsolete foramen](http://purl.obolibrary.org/obo/UBERON_0003151) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000345](http://purl.obolibrary.org/obo/HAO_0000345) + +- [obsolete foramen](http://purl.obolibrary.org/obo/UBERON_0003151) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004478](http://purl.obolibrary.org/obo/FBbt_00004478) + + +### obsolete forebrain ventricle `http://purl.obolibrary.org/obo/UBERON_2001259` +#### Removed +- [obsolete forebrain ventricle](http://purl.obolibrary.org/obo/UBERON_2001259) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0006284" + +#### Added +- [obsolete forebrain ventricle](http://purl.obolibrary.org/obo/UBERON_2001259) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [early prosencephalic vesicle](http://purl.obolibrary.org/obo/UBERON_0006284) + + +### obsolete fornix `http://purl.obolibrary.org/obo/UBERON_0001345` +#### Removed +- [obsolete fornix](http://purl.obolibrary.org/obo/UBERON_0001345) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0000052" + +- [obsolete fornix](http://purl.obolibrary.org/obo/UBERON_0001345) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0000051" + +#### Added +- [obsolete fornix](http://purl.obolibrary.org/obo/UBERON_0001345) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [fornix of vagina](http://purl.obolibrary.org/obo/UBERON_0000051) + +- [obsolete fornix](http://purl.obolibrary.org/obo/UBERON_0001345) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [fornix of brain](http://purl.obolibrary.org/obo/UBERON_0000052) + + +### obsolete frontal artery `http://purl.obolibrary.org/obo/UBERON_0009656` +#### Removed +- [obsolete frontal artery](http://purl.obolibrary.org/obo/UBERON_0009656) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MA:0001960" + +#### Added +- [obsolete frontal artery](http://purl.obolibrary.org/obo/UBERON_0009656) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MA_0001960](http://purl.obolibrary.org/obo/MA_0001960) + + +### obsolete frontal-parietal joint `http://purl.obolibrary.org/obo/UBERON_2005255` +#### Removed +- [obsolete frontal-parietal joint](http://purl.obolibrary.org/obo/UBERON_2005255) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0016631" + +- [obsolete frontal-parietal joint](http://purl.obolibrary.org/obo/UBERON_2005255) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "ZFA:0005608" + +#### Added +- [obsolete frontal-parietal joint](http://purl.obolibrary.org/obo/UBERON_2005255) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [actinopterygian frontal-parietal joint](http://purl.obolibrary.org/obo/UBERON_0016631) + +- [obsolete frontal-parietal joint](http://purl.obolibrary.org/obo/UBERON_2005255) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ZFA_0005608](http://purl.obolibrary.org/obo/ZFA_0005608) + + +### obsolete furcasternum `http://purl.obolibrary.org/obo/UBERON_0003174` +#### Removed +- [obsolete furcasternum](http://purl.obolibrary.org/obo/UBERON_0003174) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000367" + +- [obsolete furcasternum](http://purl.obolibrary.org/obo/UBERON_0003174) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004570" + +#### Added +- [obsolete furcasternum](http://purl.obolibrary.org/obo/UBERON_0003174) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004570](http://purl.obolibrary.org/obo/FBbt_00004570) + +- [obsolete furcasternum](http://purl.obolibrary.org/obo/UBERON_0003174) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000367](http://purl.obolibrary.org/obo/HAO_0000367) + + +### obsolete future medulla oblongata `http://purl.obolibrary.org/obo/UBERON_0010288` +#### Removed +- [obsolete future medulla oblongata](http://purl.obolibrary.org/obo/UBERON_0010288) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0001896" + +#### Added +- [obsolete future medulla oblongata](http://purl.obolibrary.org/obo/UBERON_0010288) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [medulla oblongata](http://purl.obolibrary.org/obo/UBERON_0001896) + + +### obsolete gamete `http://purl.obolibrary.org/obo/UBERON_3010291` +#### Removed +- [obsolete gamete](http://purl.obolibrary.org/obo/UBERON_3010291) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000300" + +#### Added +- [obsolete gamete](http://purl.obolibrary.org/obo/UBERON_3010291) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000300](http://purl.obolibrary.org/obo/CL_0000300) + + +### obsolete gasserian ganglion `http://purl.obolibrary.org/obo/UBERON_3011045` +#### Removed +- [obsolete gasserian ganglion](http://purl.obolibrary.org/obo/UBERON_3011045) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0001675" + +#### Added +- [obsolete gasserian ganglion](http://purl.obolibrary.org/obo/UBERON_3011045) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [trigeminal ganglion](http://purl.obolibrary.org/obo/UBERON_0001675) + + +### obsolete gastrula cell `http://purl.obolibrary.org/obo/UBERON_3010552` +#### Removed +- [obsolete gastrula cell](http://purl.obolibrary.org/obo/UBERON_3010552) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000361" + +#### Added +- [obsolete gastrula cell](http://purl.obolibrary.org/obo/UBERON_3010552) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000361](http://purl.obolibrary.org/obo/CL_0000361) + + +### obsolete gena `http://purl.obolibrary.org/obo/UBERON_0003154` +#### Removed +- [obsolete gena](http://purl.obolibrary.org/obo/UBERON_0003154) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000371" + +- [obsolete gena](http://purl.obolibrary.org/obo/UBERON_0003154) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004491" + +#### Added +- [obsolete gena](http://purl.obolibrary.org/obo/UBERON_0003154) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004491](http://purl.obolibrary.org/obo/FBbt_00004491) + +- [obsolete gena](http://purl.obolibrary.org/obo/UBERON_0003154) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000371](http://purl.obolibrary.org/obo/HAO_0000371) + + +### obsolete geniculate nucleus `http://purl.obolibrary.org/obo/UBERON_0012174` +#### Removed +- [obsolete geniculate nucleus](http://purl.obolibrary.org/obo/UBERON_0012174) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0001927" + +- [obsolete geniculate nucleus](http://purl.obolibrary.org/obo/UBERON_0012174) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0001926" + +#### Added +- [obsolete geniculate nucleus](http://purl.obolibrary.org/obo/UBERON_0012174) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [medial geniculate body](http://purl.obolibrary.org/obo/UBERON_0001927) + +- [obsolete geniculate nucleus](http://purl.obolibrary.org/obo/UBERON_0012174) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [lateral geniculate body](http://purl.obolibrary.org/obo/UBERON_0001926) + + +### obsolete genital system `http://purl.obolibrary.org/obo/UBERON_3011048` +#### Removed +- [obsolete genital system](http://purl.obolibrary.org/obo/UBERON_3011048) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0000990" + +#### Added +- [obsolete genital system](http://purl.obolibrary.org/obo/UBERON_3011048) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [reproductive system](http://purl.obolibrary.org/obo/UBERON_0000990) + + +### obsolete germ cell `http://purl.obolibrary.org/obo/UBERON_3010292` +#### Removed +- [obsolete germ cell](http://purl.obolibrary.org/obo/UBERON_3010292) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000586" + +#### Added +- [obsolete germ cell](http://purl.obolibrary.org/obo/UBERON_3010292) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000586](http://purl.obolibrary.org/obo/CL_0000586) + + +### obsolete germ layer / neural crest derived structure `http://purl.obolibrary.org/obo/UBERON_0010317` +#### Removed +- [obsolete germ layer / neural crest derived structure](http://purl.obolibrary.org/obo/UBERON_0010317) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0010313" + +- [obsolete germ layer / neural crest derived structure](http://purl.obolibrary.org/obo/UBERON_0010317) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0000923" + +#### Added +- [obsolete germ layer / neural crest derived structure](http://purl.obolibrary.org/obo/UBERON_0010317) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [germ layer](http://purl.obolibrary.org/obo/UBERON_0000923) + +- [obsolete germ layer / neural crest derived structure](http://purl.obolibrary.org/obo/UBERON_0010317) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [neural crest-derived structure](http://purl.obolibrary.org/obo/UBERON_0010313) + + +### obsolete germ line cell `http://purl.obolibrary.org/obo/UBERON_3010290` +#### Removed +- [obsolete germ line cell](http://purl.obolibrary.org/obo/UBERON_3010290) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000039" + +#### Added +- [obsolete germ line cell](http://purl.obolibrary.org/obo/UBERON_3010290) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000039](http://purl.obolibrary.org/obo/CL_0000039) + + +### obsolete gland of anal sac `http://purl.obolibrary.org/obo/UBERON_0011253` +#### Removed +- [obsolete gland of anal sac](http://purl.obolibrary.org/obo/UBERON_0011253) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0004760" + +#### Added +- [obsolete gland of anal sac](http://purl.obolibrary.org/obo/UBERON_0011253) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [gland of anal canal](http://purl.obolibrary.org/obo/UBERON_0004760) + + +### obsolete globe `http://purl.obolibrary.org/obo/UBERON_3010346` +#### Removed +- [obsolete globe](http://purl.obolibrary.org/obo/UBERON_3010346) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0010230" + +#### Added +- [obsolete globe](http://purl.obolibrary.org/obo/UBERON_3010346) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [eyeball of camera-type eye](http://purl.obolibrary.org/obo/UBERON_0010230) + + +### obsolete glomerular visceral epithelium `http://purl.obolibrary.org/obo/UBERON_0006852` +#### Removed +- [obsolete glomerular visceral epithelium](http://purl.obolibrary.org/obo/UBERON_0006852) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0005751" + +#### Added +- [obsolete glomerular visceral epithelium](http://purl.obolibrary.org/obo/UBERON_0006852) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [glomerular visceral epithelium](http://purl.obolibrary.org/obo/UBERON_0005751) + + +### obsolete goblet cell `http://purl.obolibrary.org/obo/UBERON_3010635` +#### Removed +- [obsolete goblet cell](http://purl.obolibrary.org/obo/UBERON_3010635) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000160" + +#### Added +- [obsolete goblet cell](http://purl.obolibrary.org/obo/UBERON_3010635) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000160](http://purl.obolibrary.org/obo/CL_0000160) + + +### obsolete gravid stage `http://purl.obolibrary.org/obo/UBERON_0009096` +#### Removed +- [obsolete gravid stage](http://purl.obolibrary.org/obo/UBERON_0009096) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0009097" + +#### Added +- [obsolete gravid stage](http://purl.obolibrary.org/obo/UBERON_0009096) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [gravid organism](http://purl.obolibrary.org/obo/UBERON_0009097) + + +### obsolete gross anatomical part of cerebral cortex `http://purl.obolibrary.org/obo/UBERON_0023783` +#### Removed +- [obsolete gross anatomical part of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0023783) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:940" + +#### Added +- [obsolete gross anatomical part of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0023783) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_940](http://purl.obolibrary.org/obo/BIRNLEX_940) + + +### obsolete head mesoderm `http://purl.obolibrary.org/obo/UBERON_0005280` +#### Removed +- [obsolete head mesoderm](http://purl.obolibrary.org/obo/UBERON_0005280) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0006904" + +#### Added +- [obsolete head mesoderm](http://purl.obolibrary.org/obo/UBERON_0005280) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [head mesenchyme from mesoderm](http://purl.obolibrary.org/obo/UBERON_0006904) + + +### obsolete head muscle `http://purl.obolibrary.org/obo/UBERON_2002198` +#### Removed +- [obsolete head muscle](http://purl.obolibrary.org/obo/UBERON_2002198) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0002376" + +#### Added +- [obsolete head muscle](http://purl.obolibrary.org/obo/UBERON_2002198) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [cranial muscle](http://purl.obolibrary.org/obo/UBERON_0002376) + + +### obsolete head of organ `http://purl.obolibrary.org/obo/UBERON_0001559` +#### Removed +- [obsolete head of organ](http://purl.obolibrary.org/obo/UBERON_0001559) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:45729" + +- [obsolete head of organ](http://purl.obolibrary.org/obo/UBERON_0001559) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MA:0000581" + +#### Added +- [obsolete head of organ](http://purl.obolibrary.org/obo/UBERON_0001559) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_45729](http://purl.obolibrary.org/obo/FMA_45729) + +- [obsolete head of organ](http://purl.obolibrary.org/obo/UBERON_0001559) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MA_0000581](http://purl.obolibrary.org/obo/MA_0000581) + + +### obsolete hematopoietic stem cell `http://purl.obolibrary.org/obo/UBERON_3010323` +#### Removed +- [obsolete hematopoietic stem cell](http://purl.obolibrary.org/obo/UBERON_3010323) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000037" + +#### Added +- [obsolete hematopoietic stem cell](http://purl.obolibrary.org/obo/UBERON_3010323) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000037](http://purl.obolibrary.org/obo/CL_0000037) + + +### obsolete hemisphere parts of cerebral cortex `http://purl.obolibrary.org/obo/UBERON_0024907` +#### Removed +- [obsolete hemisphere parts of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0024907) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0001869" + +- [obsolete hemisphere parts of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0024907) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1796" + +#### Added +- [obsolete hemisphere parts of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0024907) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [cerebral hemisphere](http://purl.obolibrary.org/obo/UBERON_0001869) + +- [obsolete hemisphere parts of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0024907) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1796](http://purl.obolibrary.org/obo/BIRNLEX_1796) + + +### obsolete hemispheric parts of the cerebellar cortex `http://purl.obolibrary.org/obo/UBERON_0024449` +#### Removed +- [obsolete hemispheric parts of the cerebellar cortex](http://purl.obolibrary.org/obo/UBERON_0024449) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1334" + +- [obsolete hemispheric parts of the cerebellar cortex](http://purl.obolibrary.org/obo/UBERON_0024449) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0002245" + +#### Added +- [obsolete hemispheric parts of the cerebellar cortex](http://purl.obolibrary.org/obo/UBERON_0024449) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [cerebellar hemisphere](http://purl.obolibrary.org/obo/UBERON_0002245) + +- [obsolete hemispheric parts of the cerebellar cortex](http://purl.obolibrary.org/obo/UBERON_0024449) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1334](http://purl.obolibrary.org/obo/BIRNLEX_1334) + + +### obsolete hindbrain neural fold `http://purl.obolibrary.org/obo/UBERON_0005265` +#### Removed +- [obsolete hindbrain neural fold](http://purl.obolibrary.org/obo/UBERON_0005265) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "VHOG:0001211" + +#### Added +- [obsolete hindbrain neural fold](http://purl.obolibrary.org/obo/UBERON_0005265) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [VHOG_0001211](http://purl.obolibrary.org/obo/VHOG_0001211) + + +### obsolete horizontal septum `http://purl.obolibrary.org/obo/UBERON_2002131` +#### Removed +- [obsolete horizontal septum](http://purl.obolibrary.org/obo/UBERON_2002131) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0003901" + +#### Added +- [obsolete horizontal septum](http://purl.obolibrary.org/obo/UBERON_2002131) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [horizontal septum](http://purl.obolibrary.org/obo/UBERON_0003901) + + +### obsolete ilial corpus `http://purl.obolibrary.org/obo/UBERON_3000775` +#### Removed +- [obsolete ilial corpus](http://purl.obolibrary.org/obo/UBERON_3000775) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0010747" + +#### Added +- [obsolete ilial corpus](http://purl.obolibrary.org/obo/UBERON_3000775) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [body of ilium](http://purl.obolibrary.org/obo/UBERON_0010747) + + +### obsolete iliocostalis musculature `http://purl.obolibrary.org/obo/UBERON_0004483` +#### Removed +- [obsolete iliocostalis musculature](http://purl.obolibrary.org/obo/UBERON_0004483) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:33062" + +#### Added +- [obsolete iliocostalis musculature](http://purl.obolibrary.org/obo/UBERON_0004483) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_33062](http://purl.obolibrary.org/obo/FMA_33062) + + +### obsolete incisive process of premaxilla `http://purl.obolibrary.org/obo/UBERON_0018327` +#### Removed +- [obsolete incisive process of premaxilla](http://purl.obolibrary.org/obo/UBERON_0018327) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0017249" + +#### Added +- [obsolete incisive process of premaxilla](http://purl.obolibrary.org/obo/UBERON_0018327) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [incisive process of premaxilla](http://purl.obolibrary.org/obo/UBERON_0017249) + + +### obsolete insect adult clypeo-labral anlage `http://purl.obolibrary.org/obo/UBERON_6004203` +#### Removed +- [obsolete insect adult clypeo-labral anlage](http://purl.obolibrary.org/obo/UBERON_6004203) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:6005514" + +#### Added +- [obsolete insect adult clypeo-labral anlage](http://purl.obolibrary.org/obo/UBERON_6004203) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [insect adult clypeo-labral primordium](http://purl.obolibrary.org/obo/UBERON_6005514) + + +### obsolete insect anlage in statu nascendi `http://purl.obolibrary.org/obo/UBERON_6005413` +#### Removed +- [obsolete insect anlage in statu nascendi](http://purl.obolibrary.org/obo/UBERON_6005413) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0007688" + +#### Added +- [obsolete insect anlage in statu nascendi](http://purl.obolibrary.org/obo/UBERON_6005413) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [anlage](http://purl.obolibrary.org/obo/UBERON_0007688) + + +### obsolete insect anterior dorsal histoblast nest abdominal `http://purl.obolibrary.org/obo/UBERON_6001792` +#### Removed +- [obsolete insect anterior dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001792) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:6001790" + +#### Added +- [obsolete insect anterior dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001792) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [insect histoblast nest](http://purl.obolibrary.org/obo/UBERON_6001790) + + +### obsolete insect anterior-posterior subdivision of organism `http://purl.obolibrary.org/obo/UBERON_6057001` +#### Removed +- [obsolete insect anterior-posterior subdivision of organism](http://purl.obolibrary.org/obo/UBERON_6057001) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0011676" + +#### Added +- [obsolete insect anterior-posterior subdivision of organism](http://purl.obolibrary.org/obo/UBERON_6057001) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [subdivision of organism along main body axis](http://purl.obolibrary.org/obo/UBERON_0011676) + + +### obsolete insect clypeo-labral anlage `http://purl.obolibrary.org/obo/UBERON_6005439` +#### Removed +- [obsolete insect clypeo-labral anlage](http://purl.obolibrary.org/obo/UBERON_6005439) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:6005538" + +#### Added +- [obsolete insect clypeo-labral anlage](http://purl.obolibrary.org/obo/UBERON_6005439) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [insect clypeo-labral primordium](http://purl.obolibrary.org/obo/UBERON_6005538) + + +### obsolete insect dorsal ectoderm anlage `http://purl.obolibrary.org/obo/UBERON_6005428` +#### Removed +- [obsolete insect dorsal ectoderm anlage](http://purl.obolibrary.org/obo/UBERON_6005428) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:6005427" + +#### Added +- [obsolete insect dorsal ectoderm anlage](http://purl.obolibrary.org/obo/UBERON_6005428) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [insect ectoderm anlage](http://purl.obolibrary.org/obo/UBERON_6005427) + + +### obsolete insect dorsal histoblast nest abdominal `http://purl.obolibrary.org/obo/UBERON_6001791` +#### Removed +- [obsolete insect dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001791) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:6001790" + +#### Added +- [obsolete insect dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001791) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [insect histoblast nest](http://purl.obolibrary.org/obo/UBERON_6001790) + + +### obsolete insect histoblast `http://purl.obolibrary.org/obo/UBERON_6001789` +#### Removed +- [obsolete insect histoblast](http://purl.obolibrary.org/obo/UBERON_6001789) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000373" + +#### Added +- [obsolete insect histoblast](http://purl.obolibrary.org/obo/UBERON_6001789) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000373](http://purl.obolibrary.org/obo/CL_0000373) + + +### obsolete insect pharynx `http://purl.obolibrary.org/obo/UBERON_60005380` +#### Removed +- [obsolete insect pharynx](http://purl.obolibrary.org/obo/UBERON_60005380) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:6005380" + +#### Added +- [obsolete insect pharynx](http://purl.obolibrary.org/obo/UBERON_60005380) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [insect pharynx](http://purl.obolibrary.org/obo/UBERON_6005380) + + +### obsolete insect posterior dorsal histoblast nest abdominal `http://purl.obolibrary.org/obo/UBERON_6001809` +#### Removed +- [obsolete insect posterior dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001809) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:6001790" + +#### Added +- [obsolete insect posterior dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001809) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [insect histoblast nest](http://purl.obolibrary.org/obo/UBERON_6001790) + + +### obsolete insect trunk mesoderm anlage `http://purl.obolibrary.org/obo/UBERON_6005436` +#### Removed +- [obsolete insect trunk mesoderm anlage](http://purl.obolibrary.org/obo/UBERON_6005436) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:6000128" + +#### Added +- [obsolete insect trunk mesoderm anlage](http://purl.obolibrary.org/obo/UBERON_6005436) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [insect trunk mesoderm](http://purl.obolibrary.org/obo/UBERON_6000128) + + +### obsolete insect visual anlage `http://purl.obolibrary.org/obo/UBERON_6005434` +#### Removed +- [obsolete insect visual anlage](http://purl.obolibrary.org/obo/UBERON_6005434) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:6001059" + +#### Added +- [obsolete insect visual anlage](http://purl.obolibrary.org/obo/UBERON_6005434) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [insect visual primordium](http://purl.obolibrary.org/obo/UBERON_6001059) + + +### obsolete intercalar `http://purl.obolibrary.org/obo/UBERON_4000024` +#### Removed +- [obsolete intercalar](http://purl.obolibrary.org/obo/UBERON_4000024) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:2000474" + +#### Added +- [obsolete intercalar](http://purl.obolibrary.org/obo/UBERON_4000024) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [intercalar](http://purl.obolibrary.org/obo/UBERON_2000474) + + +### obsolete intergluteal cleft `http://purl.obolibrary.org/obo/UBERON_0016411` +#### Removed +- [obsolete intergluteal cleft](http://purl.obolibrary.org/obo/UBERON_0016411) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0036013" + +- [obsolete intergluteal cleft](http://purl.obolibrary.org/obo/UBERON_0016411) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0036014" + +#### Added +- [obsolete intergluteal cleft](http://purl.obolibrary.org/obo/UBERON_0016411) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [gluteal sulcus](http://purl.obolibrary.org/obo/UBERON_0036014) + +- [obsolete intergluteal cleft](http://purl.obolibrary.org/obo/UBERON_0016411) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [intergluteal cleft](http://purl.obolibrary.org/obo/UBERON_0036013) + + +### obsolete intermediate filament `http://purl.obolibrary.org/obo/UBERON_0003000` +#### Removed +- [obsolete intermediate filament](http://purl.obolibrary.org/obo/UBERON_0003000) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UMLS:C0021770" + +- [obsolete intermediate filament](http://purl.obolibrary.org/obo/UBERON_0003000) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GAID:1079" + +- [obsolete intermediate filament](http://purl.obolibrary.org/obo/UBERON_0003000) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NCIT:C13248" + +- [obsolete intermediate filament](http://purl.obolibrary.org/obo/UBERON_0003000) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:63851" + +- [obsolete intermediate filament](http://purl.obolibrary.org/obo/UBERON_0003000) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MESH:A11.284.195.190.750.410" + +- [obsolete intermediate filament](http://purl.obolibrary.org/obo/UBERON_0003000) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:879" + +- [obsolete intermediate filament](http://purl.obolibrary.org/obo/UBERON_0003000) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "GO:0005882" + +- [obsolete intermediate filament](http://purl.obolibrary.org/obo/UBERON_0003000) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NIF_Subcellular:sao952483289" + +#### Added +- [obsolete intermediate filament](http://purl.obolibrary.org/obo/UBERON_0003000) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [UMLS_C0021770](http://purl.obolibrary.org/obo/UMLS_C0021770) + +- [obsolete intermediate filament](http://purl.obolibrary.org/obo/UBERON_0003000) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GAID_1079](http://purl.obolibrary.org/obo/GAID_1079) + +- [obsolete intermediate filament](http://purl.obolibrary.org/obo/UBERON_0003000) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_879](http://purl.obolibrary.org/obo/BIRNLEX_879) + +- [obsolete intermediate filament](http://purl.obolibrary.org/obo/UBERON_0003000) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NCIT_C13248](http://purl.obolibrary.org/obo/NCIT_C13248) + +- [obsolete intermediate filament](http://purl.obolibrary.org/obo/UBERON_0003000) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MESH_A11.284.195.190.750.410](http://purl.obolibrary.org/obo/MESH_A11.284.195.190.750.410) + +- [obsolete intermediate filament](http://purl.obolibrary.org/obo/UBERON_0003000) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_63851](http://purl.obolibrary.org/obo/FMA_63851) + +- [obsolete intermediate filament](http://purl.obolibrary.org/obo/UBERON_0003000) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NIF_Subcellular_sao952483289](http://purl.obolibrary.org/obo/NIF_Subcellular_sao952483289) + +- [obsolete intermediate filament](http://purl.obolibrary.org/obo/UBERON_0003000) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [GO_0005882](http://purl.obolibrary.org/obo/GO_0005882) + + +### obsolete interneuron spinal cord `http://purl.obolibrary.org/obo/UBERON_2000778` +#### Removed +- [obsolete interneuron spinal cord](http://purl.obolibrary.org/obo/UBERON_2000778) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0005000" + +#### Added +- [obsolete interneuron spinal cord](http://purl.obolibrary.org/obo/UBERON_2000778) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0005000](http://purl.obolibrary.org/obo/CL_0005000) + + +### obsolete intestine muscle `http://purl.obolibrary.org/obo/UBERON_0000954` +#### Removed +- [obsolete intestine muscle](http://purl.obolibrary.org/obo/UBERON_0000954) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00003537" + +- [obsolete intestine muscle](http://purl.obolibrary.org/obo/UBERON_0000954) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "WBbt:0005796" + +#### Added +- [obsolete intestine muscle](http://purl.obolibrary.org/obo/UBERON_0000954) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [WBbt_0005796](http://purl.obolibrary.org/obo/WBbt_0005796) + +- [obsolete intestine muscle](http://purl.obolibrary.org/obo/UBERON_0000954) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00003537](http://purl.obolibrary.org/obo/FBbt_00003537) + + +### obsolete intramembranous ossification `http://purl.obolibrary.org/obo/UBERON_4000141` +#### Removed +- [obsolete intramembranous ossification](http://purl.obolibrary.org/obo/UBERON_4000141) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "GO:0001957" + +#### Added +- [obsolete intramembranous ossification](http://purl.obolibrary.org/obo/UBERON_4000141) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [GO_0001957](http://purl.obolibrary.org/obo/GO_0001957) + + +### obsolete iridophore `http://purl.obolibrary.org/obo/UBERON_3010318` +#### Removed +- [obsolete iridophore](http://purl.obolibrary.org/obo/UBERON_3010318) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000431" + +#### Added +- [obsolete iridophore](http://purl.obolibrary.org/obo/UBERON_3010318) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000431](http://purl.obolibrary.org/obo/CL_0000431) + + +### obsolete jointed/prehensile appendage `http://purl.obolibrary.org/obo/UBERON_0005896` +#### Removed +- [obsolete jointed/prehensile appendage](http://purl.obolibrary.org/obo/UBERON_0005896) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "ncithesaurus:Extremities" + +- [obsolete jointed/prehensile appendage](http://purl.obolibrary.org/obo/UBERON_0005896) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "AEO:0000172" + +#### Added +- [obsolete jointed/prehensile appendage](http://purl.obolibrary.org/obo/UBERON_0005896) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ncithesaurus_Extremities](http://purl.obolibrary.org/obo/ncithesaurus_Extremities) + +- [obsolete jointed/prehensile appendage](http://purl.obolibrary.org/obo/UBERON_0005896) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [AEO_0000172](http://purl.obolibrary.org/obo/AEO_0000172) + + +### obsolete labial gland `http://purl.obolibrary.org/obo/UBERON_0000385` +#### Removed +- [obsolete labial gland](http://purl.obolibrary.org/obo/UBERON_0000385) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:71613" + +- [obsolete labial gland](http://purl.obolibrary.org/obo/UBERON_0000385) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000449" + +#### Added +- [obsolete labial gland](http://purl.obolibrary.org/obo/UBERON_0000385) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000449](http://purl.obolibrary.org/obo/HAO_0000449) + +- [obsolete labial gland](http://purl.obolibrary.org/obo/UBERON_0000385) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_71613](http://purl.obolibrary.org/obo/FMA_71613) + + +### obsolete labial sensillum `http://purl.obolibrary.org/obo/UBERON_0000943` +#### Removed +- [obsolete labial sensillum](http://purl.obolibrary.org/obo/UBERON_0000943) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00002721" + +- [obsolete labial sensillum](http://purl.obolibrary.org/obo/UBERON_0000943) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "WBbt:0005107" + +#### Added +- [obsolete labial sensillum](http://purl.obolibrary.org/obo/UBERON_0000943) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00002721](http://purl.obolibrary.org/obo/FBbt_00002721) + +- [obsolete labial sensillum](http://purl.obolibrary.org/obo/UBERON_0000943) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [WBbt_0005107](http://purl.obolibrary.org/obo/WBbt_0005107) + + +### obsolete lacinia `http://purl.obolibrary.org/obo/UBERON_0003167` +#### Removed +- [obsolete lacinia](http://purl.obolibrary.org/obo/UBERON_0003167) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000457" + +- [obsolete lacinia](http://purl.obolibrary.org/obo/UBERON_0003167) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004536" + +#### Added +- [obsolete lacinia](http://purl.obolibrary.org/obo/UBERON_0003167) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000457](http://purl.obolibrary.org/obo/HAO_0000457) + +- [obsolete lacinia](http://purl.obolibrary.org/obo/UBERON_0003167) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004536](http://purl.obolibrary.org/obo/FBbt_00004536) + + +### obsolete lacrimal `http://purl.obolibrary.org/obo/UBERON_3010146` +#### Removed +- [obsolete lacrimal](http://purl.obolibrary.org/obo/UBERON_3010146) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "Investing bone in non-teleosts associated with nasolacrimal duct and lying between pars facialis of maxilla and prefrontal and sometimes nasal." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "AAO:EJS" + +- [obsolete lacrimal](http://purl.obolibrary.org/obo/UBERON_3010146) [label](http://www.w3.org/2000/01/rdf-schema#label) "lacrimal" + +- [obsolete lacrimal](http://purl.obolibrary.org/obo/UBERON_3010146) SubClassOf [nasal skeleton](http://purl.obolibrary.org/obo/UBERON_0006813) + +#### Added +- [obsolete lacrimal](http://purl.obolibrary.org/obo/UBERON_3010146) [deprecated](http://www.w3.org/2002/07/owl#deprecated) true + +- [obsolete lacrimal](http://purl.obolibrary.org/obo/UBERON_3010146) [IAO_0000233](http://purl.obolibrary.org/obo/IAO_0000233) "https://github.com/obophenotype/uberon/issues/2804" + +- [obsolete lacrimal](http://purl.obolibrary.org/obo/UBERON_3010146) [comment](http://www.w3.org/2000/01/rdf-schema#comment) "The synonym of this term has been merged into 'lacrimal bone'." + +- [obsolete lacrimal](http://purl.obolibrary.org/obo/UBERON_3010146) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [lacrimal bone](http://purl.obolibrary.org/obo/UBERON_0001680) + +- [obsolete lacrimal](http://purl.obolibrary.org/obo/UBERON_3010146) [label](http://www.w3.org/2000/01/rdf-schema#label) "obsolete lacrimal" + +- [obsolete lacrimal](http://purl.obolibrary.org/obo/UBERON_3010146) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "OBSOLETE. Investing bone in non-teleosts associated with nasolacrimal duct and lying between pars facialis of maxilla and prefrontal and sometimes nasal." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "AAO:EJS" + + +### obsolete lamina II of gray matter of spinal cord `http://purl.obolibrary.org/obo/UBERON_0016573` +#### Removed +- [obsolete lamina II of gray matter of spinal cord](http://purl.obolibrary.org/obo/UBERON_0016573) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0002181" + +#### Added +- [obsolete lamina II of gray matter of spinal cord](http://purl.obolibrary.org/obo/UBERON_0016573) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [substantia gelatinosa](http://purl.obolibrary.org/obo/UBERON_0002181) + + +### obsolete larval abdomen `http://purl.obolibrary.org/obo/UBERON_0003141` +#### Removed +- [obsolete larval abdomen](http://purl.obolibrary.org/obo/UBERON_0003141) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00001746" + +- [obsolete larval abdomen](http://purl.obolibrary.org/obo/UBERON_0003141) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000460" + +#### Added +- [obsolete larval abdomen](http://purl.obolibrary.org/obo/UBERON_0003141) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000460](http://purl.obolibrary.org/obo/HAO_0000460) + +- [obsolete larval abdomen](http://purl.obolibrary.org/obo/UBERON_0003141) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00001746](http://purl.obolibrary.org/obo/FBbt_00001746) + + +### obsolete larval structure `http://purl.obolibrary.org/obo/UBERON_0011771` +#### Removed +- [obsolete larval structure](http://purl.obolibrary.org/obo/UBERON_0011771) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "AAO:0000265" + +#### Added +- [obsolete larval structure](http://purl.obolibrary.org/obo/UBERON_0011771) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [AAO_0000265](http://purl.obolibrary.org/obo/AAO_0000265) + + +### obsolete larval tagma `http://purl.obolibrary.org/obo/UBERON_0003139` +#### Removed +- [obsolete larval tagma](http://purl.obolibrary.org/obo/UBERON_0003139) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000462" + +- [obsolete larval tagma](http://purl.obolibrary.org/obo/UBERON_0003139) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00001728" + +#### Added +- [obsolete larval tagma](http://purl.obolibrary.org/obo/UBERON_0003139) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00001728](http://purl.obolibrary.org/obo/FBbt_00001728) + +- [obsolete larval tagma](http://purl.obolibrary.org/obo/UBERON_0003139) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000462](http://purl.obolibrary.org/obo/HAO_0000462) + + +### obsolete larval thorax `http://purl.obolibrary.org/obo/UBERON_0003140` +#### Removed +- [obsolete larval thorax](http://purl.obolibrary.org/obo/UBERON_0003140) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000463" + +- [obsolete larval thorax](http://purl.obolibrary.org/obo/UBERON_0003140) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00001741" + +#### Added +- [obsolete larval thorax](http://purl.obolibrary.org/obo/UBERON_0003140) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000463](http://purl.obolibrary.org/obo/HAO_0000463) + +- [obsolete larval thorax](http://purl.obolibrary.org/obo/UBERON_0003140) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00001741](http://purl.obolibrary.org/obo/FBbt_00001741) + + +### obsolete late proximal tubule `http://purl.obolibrary.org/obo/UBERON_3011122` +#### Removed +- [obsolete late proximal tubule](http://purl.obolibrary.org/obo/UBERON_3011122) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0009622" + +#### Added +- [obsolete late proximal tubule](http://purl.obolibrary.org/obo/UBERON_3011122) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [pronephric proximal straight tubule](http://purl.obolibrary.org/obo/UBERON_0009622) + + +### obsolete lateral line receptor `http://purl.obolibrary.org/obo/UBERON_3010705` +#### Removed +- [obsolete lateral line receptor](http://purl.obolibrary.org/obo/UBERON_3010705) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0008904" + +#### Added +- [obsolete lateral line receptor](http://purl.obolibrary.org/obo/UBERON_3010705) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [neuromast](http://purl.obolibrary.org/obo/UBERON_0008904) + + +### obsolete lateral line receptor organ `http://purl.obolibrary.org/obo/UBERON_3001001` +#### Removed +- [obsolete lateral line receptor organ](http://purl.obolibrary.org/obo/UBERON_3001001) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0008904" + +#### Added +- [obsolete lateral line receptor organ](http://purl.obolibrary.org/obo/UBERON_3001001) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [neuromast](http://purl.obolibrary.org/obo/UBERON_0008904) + + +### obsolete lateral mesoderm `http://purl.obolibrary.org/obo/UBERON_2001065` +#### Removed +- [obsolete lateral mesoderm](http://purl.obolibrary.org/obo/UBERON_2001065) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0003081" + +#### Added +- [obsolete lateral mesoderm](http://purl.obolibrary.org/obo/UBERON_2001065) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [lateral plate mesoderm](http://purl.obolibrary.org/obo/UBERON_0003081) + + +### obsolete left side of organism `http://purl.obolibrary.org/obo/UBERON_0004531` +#### Removed +- [obsolete left side of organism](http://purl.obolibrary.org/obo/UBERON_0004531) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BSPO:0000000" + +#### Added +- [obsolete left side of organism](http://purl.obolibrary.org/obo/UBERON_0004531) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BSPO_0000000](http://purl.obolibrary.org/obo/BSPO_0000000) + + +### obsolete leg joint `http://purl.obolibrary.org/obo/UBERON_0004174` +#### Removed +- [obsolete leg joint](http://purl.obolibrary.org/obo/UBERON_0004174) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0003657" + +#### Added +- [obsolete leg joint](http://purl.obolibrary.org/obo/UBERON_0004174) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [limb joint](http://purl.obolibrary.org/obo/UBERON_0003657) + + +### obsolete lens vesicle capsule `http://purl.obolibrary.org/obo/UBERON_0005714` +#### Removed +- [obsolete lens vesicle capsule](http://purl.obolibrary.org/obo/UBERON_0005714) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0001804" + +- [obsolete lens vesicle capsule](http://purl.obolibrary.org/obo/UBERON_0005714) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EHDAA:4739" + +- [obsolete lens vesicle capsule](http://purl.obolibrary.org/obo/UBERON_0005714) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "RETIRED_EHDAA2:0000985" + +#### Added +- [obsolete lens vesicle capsule](http://purl.obolibrary.org/obo/UBERON_0005714) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [RETIRED_EHDAA2_0000985](http://purl.obolibrary.org/obo/RETIRED_EHDAA2_0000985) + +- [obsolete lens vesicle capsule](http://purl.obolibrary.org/obo/UBERON_0005714) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EHDAA_4739](http://purl.obolibrary.org/obo/EHDAA_4739) + +- [obsolete lens vesicle capsule](http://purl.obolibrary.org/obo/UBERON_0005714) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [capsule of lens](http://purl.obolibrary.org/obo/UBERON_0001804) + + +### obsolete lepidotrichium `http://purl.obolibrary.org/obo/UBERON_2001554` +#### Removed +- [obsolete lepidotrichium](http://purl.obolibrary.org/obo/UBERON_2001554) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:4000172" + +#### Added +- [obsolete lepidotrichium](http://purl.obolibrary.org/obo/UBERON_2001554) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [lepidotrichium](http://purl.obolibrary.org/obo/UBERON_4000172) + + +### obsolete leydig cells `http://purl.obolibrary.org/obo/UBERON_3010627` +#### Removed +- [obsolete leydig cells](http://purl.obolibrary.org/obo/UBERON_3010627) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000178" + +#### Added +- [obsolete leydig cells](http://purl.obolibrary.org/obo/UBERON_3010627) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000178](http://purl.obolibrary.org/obo/CL_0000178) + + +### obsolete ligament `http://purl.obolibrary.org/obo/UBERON_0001475` +#### Removed +- [obsolete ligament](http://purl.obolibrary.org/obo/UBERON_0001475) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0002360" + +- [obsolete ligament](http://purl.obolibrary.org/obo/UBERON_0001475) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:30319" + +- [obsolete ligament](http://purl.obolibrary.org/obo/UBERON_0001475) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0000211" + +#### Added +- [obsolete ligament](http://purl.obolibrary.org/obo/UBERON_0001475) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ligament](http://purl.obolibrary.org/obo/UBERON_0000211) + +- [obsolete ligament](http://purl.obolibrary.org/obo/UBERON_0001475) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_30319](http://purl.obolibrary.org/obo/FMA_30319) + +- [obsolete ligament](http://purl.obolibrary.org/obo/UBERON_0001475) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [meninx](http://purl.obolibrary.org/obo/UBERON_0002360) + + +### obsolete limb of embryo `http://purl.obolibrary.org/obo/UBERON_0003285` +#### Removed +- [obsolete limb of embryo](http://purl.obolibrary.org/obo/UBERON_0003285) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0002101" + +#### Added +- [obsolete limb of embryo](http://purl.obolibrary.org/obo/UBERON_0003285) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [limb](http://purl.obolibrary.org/obo/UBERON_0002101) + + +### obsolete line from caundal-sacral region of the vertebral column to the last vertebra `http://purl.obolibrary.org/obo/UBERON_7500036` +#### Removed +- [obsolete line from caundal-sacral region of the vertebral column to the last vertebra](http://purl.obolibrary.org/obo/UBERON_7500036) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "OBA:VT0002758" + +#### Added +- [obsolete line from caundal-sacral region of the vertebral column to the last vertebra](http://purl.obolibrary.org/obo/UBERON_7500036) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [OBA_VT0002758](http://purl.obolibrary.org/obo/OBA_VT0002758) + + +### obsolete line from helix of outer ear to intertragus incisure `http://purl.obolibrary.org/obo/UBERON_7500037` +#### Removed +- [obsolete line from helix of outer ear to intertragus incisure](http://purl.obolibrary.org/obo/UBERON_7500037) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FOVT:0000005" + +#### Added +- [obsolete line from helix of outer ear to intertragus incisure](http://purl.obolibrary.org/obo/UBERON_7500037) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FOVT_0000005](http://purl.obolibrary.org/obo/FOVT_0000005) + + +### obsolete line from the distal-most end of the longest nail to the posterior-most part of the foot `http://purl.obolibrary.org/obo/UBERON_7500038` +#### Removed +- [obsolete line from the distal-most end of the longest nail to the posterior-most part of the foot](http://purl.obolibrary.org/obo/UBERON_7500038) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FOVT:0000003" + +#### Added +- [obsolete line from the distal-most end of the longest nail to the posterior-most part of the foot](http://purl.obolibrary.org/obo/UBERON_7500038) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FOVT_0000003](http://purl.obolibrary.org/obo/FOVT_0000003) + + +### obsolete line from the distal-most end of the longest phalax of the foot to the posterior-most part of the foot `http://purl.obolibrary.org/obo/UBERON_7500042` +#### Removed +- [obsolete line from the distal-most end of the longest phalax of the foot to the posterior-most part of the foot](http://purl.obolibrary.org/obo/UBERON_7500042) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FOVT:0000004" + +#### Added +- [obsolete line from the distal-most end of the longest phalax of the foot to the posterior-most part of the foot](http://purl.obolibrary.org/obo/UBERON_7500042) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FOVT_0000004](http://purl.obolibrary.org/obo/FOVT_0000004) + + +### obsolete line from tip of nose to the caudal-sacral region of the vertebral column `http://purl.obolibrary.org/obo/UBERON_7500043` +#### Removed +- [obsolete line from tip of nose to the caudal-sacral region of the vertebral column](http://purl.obolibrary.org/obo/UBERON_7500043) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FOVT:0000002" + +#### Added +- [obsolete line from tip of nose to the caudal-sacral region of the vertebral column](http://purl.obolibrary.org/obo/UBERON_7500043) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FOVT_0000002](http://purl.obolibrary.org/obo/FOVT_0000002) + + +### obsolete line from tip of nose to the posterior-most part of the last caudal vertebra `http://purl.obolibrary.org/obo/UBERON_7500044` +#### Removed +- [obsolete line from tip of nose to the posterior-most part of the last caudal vertebra](http://purl.obolibrary.org/obo/UBERON_7500044) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FOVT:0000001" + +#### Added +- [obsolete line from tip of nose to the posterior-most part of the last caudal vertebra](http://purl.obolibrary.org/obo/UBERON_7500044) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FOVT_0000001](http://purl.obolibrary.org/obo/FOVT_0000001) + + +### obsolete line from trochlea of humerus to proximal head of humerus `http://purl.obolibrary.org/obo/UBERON_7500051` +#### Removed +- [obsolete line from trochlea of humerus to proximal head of humerus](http://purl.obolibrary.org/obo/UBERON_7500051) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FOVT:0000008" + +#### Added +- [obsolete line from trochlea of humerus to proximal head of humerus](http://purl.obolibrary.org/obo/UBERON_7500051) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FOVT_0000008](http://purl.obolibrary.org/obo/FOVT_0000008) + + +### obsolete line from trochlea of humerus to ventral tubercle of humerus `http://purl.obolibrary.org/obo/UBERON_7500060` +#### Removed +- [obsolete line from trochlea of humerus to ventral tubercle of humerus](http://purl.obolibrary.org/obo/UBERON_7500060) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FOVT:0000009" + +#### Added +- [obsolete line from trochlea of humerus to ventral tubercle of humerus](http://purl.obolibrary.org/obo/UBERON_7500060) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FOVT_0000009](http://purl.obolibrary.org/obo/FOVT_0000009) + + +### obsolete line of medial condyle of femur to greater trochanter `http://purl.obolibrary.org/obo/UBERON_7500045` +#### Removed +- [obsolete line of medial condyle of femur to greater trochanter](http://purl.obolibrary.org/obo/UBERON_7500045) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FOVT:0000006" + +#### Added +- [obsolete line of medial condyle of femur to greater trochanter](http://purl.obolibrary.org/obo/UBERON_7500045) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FOVT_0000006](http://purl.obolibrary.org/obo/FOVT_0000006) + + +### obsolete line of medial condyle of femur to head of femur `http://purl.obolibrary.org/obo/UBERON_7500050` +#### Removed +- [obsolete line of medial condyle of femur to head of femur](http://purl.obolibrary.org/obo/UBERON_7500050) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FOVT:0000007" + +#### Added +- [obsolete line of medial condyle of femur to head of femur](http://purl.obolibrary.org/obo/UBERON_7500050) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FOVT_0000007](http://purl.obolibrary.org/obo/FOVT_0000007) + + +### obsolete lingual cusp of tooth `http://purl.obolibrary.org/obo/UBERON_0018280` +#### Removed +- [obsolete lingual cusp of tooth](http://purl.obolibrary.org/obo/UBERON_0018280) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0016929" + +#### Added +- [obsolete lingual cusp of tooth](http://purl.obolibrary.org/obo/UBERON_0018280) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [lingual cusp of tooth](http://purl.obolibrary.org/obo/UBERON_0016929) + + +### obsolete lipid droplet `http://purl.obolibrary.org/obo/UBERON_0000919` +#### Removed +- [obsolete lipid droplet](http://purl.obolibrary.org/obo/UBERON_0000919) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GO:0005811" + +- [obsolete lipid droplet](http://purl.obolibrary.org/obo/UBERON_0000919) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "GO:0005811" + +- [obsolete lipid droplet](http://purl.obolibrary.org/obo/UBERON_0000919) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:62962" + +#### Added +- [obsolete lipid droplet](http://purl.obolibrary.org/obo/UBERON_0000919) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_62962](http://purl.obolibrary.org/obo/FMA_62962) + +- [obsolete lipid droplet](http://purl.obolibrary.org/obo/UBERON_0000919) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GO_0005811](http://purl.obolibrary.org/obo/GO_0005811) + +- [obsolete lipid droplet](http://purl.obolibrary.org/obo/UBERON_0000919) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [GO_0005811](http://purl.obolibrary.org/obo/GO_0005811) + + +### obsolete lobe parts of cerebral cortex `http://purl.obolibrary.org/obo/UBERON_0003022` +#### Removed +- [obsolete lobe parts of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0003022) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:68603" + +#### Added +- [obsolete lobe parts of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0003022) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_68603](http://purl.obolibrary.org/obo/FMA_68603) + + +### obsolete locomotive weight-bearing appendage `http://purl.obolibrary.org/obo/UBERON_0005894` +#### Removed +- [obsolete locomotive weight-bearing appendage](http://purl.obolibrary.org/obo/UBERON_0005894) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0000026" + +#### Added +- [obsolete locomotive weight-bearing appendage](http://purl.obolibrary.org/obo/UBERON_0005894) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [appendage](http://purl.obolibrary.org/obo/UBERON_0000026) + + +### obsolete lymph organ `http://purl.obolibrary.org/obo/UBERON_0005180` +#### Removed +- [obsolete lymph organ](http://purl.obolibrary.org/obo/UBERON_0005180) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MA:0000747" + +#### Added +- [obsolete lymph organ](http://purl.obolibrary.org/obo/UBERON_0005180) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MA_0000747](http://purl.obolibrary.org/obo/MA_0000747) + + +### obsolete lymphocyte `http://purl.obolibrary.org/obo/UBERON_3010308` +#### Removed +- [obsolete lymphocyte](http://purl.obolibrary.org/obo/UBERON_3010308) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000542" + +#### Added +- [obsolete lymphocyte](http://purl.obolibrary.org/obo/UBERON_3010308) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000542](http://purl.obolibrary.org/obo/CL_0000542) + + +### obsolete macula lagena `http://purl.obolibrary.org/obo/UBERON_0003927` +#### Removed +- [obsolete macula lagena](http://purl.obolibrary.org/obo/UBERON_0003927) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "ZFA:0000116" + +#### Added +- [obsolete macula lagena](http://purl.obolibrary.org/obo/UBERON_0003927) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ZFA_0000116](http://purl.obolibrary.org/obo/ZFA_0000116) + + +### obsolete macula lutea `http://purl.obolibrary.org/obo/UBERON_0001784` +#### Removed +- [obsolete macula lutea](http://purl.obolibrary.org/obo/UBERON_0001784) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0000053" + +- [obsolete macula lutea](http://purl.obolibrary.org/obo/UBERON_0001784) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0000054" + +#### Added +- [obsolete macula lutea](http://purl.obolibrary.org/obo/UBERON_0001784) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [macula](http://purl.obolibrary.org/obo/UBERON_0000054) + +- [obsolete macula lutea](http://purl.obolibrary.org/obo/UBERON_0001784) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [macula lutea](http://purl.obolibrary.org/obo/UBERON_0000053) + + +### obsolete mammary gland sebaceous gland `http://purl.obolibrary.org/obo/UBERON_0003486` +#### Removed +- [obsolete mammary gland sebaceous gland](http://purl.obolibrary.org/obo/UBERON_0003486) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0011827" + +#### Added +- [obsolete mammary gland sebaceous gland](http://purl.obolibrary.org/obo/UBERON_0003486) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [areolar gland](http://purl.obolibrary.org/obo/UBERON_0011827) + + +### obsolete manual claw `http://purl.obolibrary.org/obo/UBERON_4200179` +#### Removed +- [obsolete manual claw](http://purl.obolibrary.org/obo/UBERON_4200179) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0009565" + +#### Added +- [obsolete manual claw](http://purl.obolibrary.org/obo/UBERON_4200179) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [nail of manual digit](http://purl.obolibrary.org/obo/UBERON_0009565) + + +### obsolete marginal blastomere `http://purl.obolibrary.org/obo/UBERON_2000541` +#### Removed +- [obsolete marginal blastomere](http://purl.obolibrary.org/obo/UBERON_2000541) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "ZFA:0000541" + +#### Added +- [obsolete marginal blastomere](http://purl.obolibrary.org/obo/UBERON_2000541) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [ZFA_0000541](http://purl.obolibrary.org/obo/ZFA_0000541) + + +### obsolete matrix part of body of caudate nucleus `http://purl.obolibrary.org/obo/UBERON_0027243` +#### Removed +- [obsolete matrix part of body of caudate nucleus](http://purl.obolibrary.org/obo/UBERON_0027243) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:1010003" + +#### Added +- [obsolete matrix part of body of caudate nucleus](http://purl.obolibrary.org/obo/UBERON_0027243) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_1010003](http://purl.obolibrary.org/obo/NLXANAT_1010003) + + +### obsolete maxillary saddle `http://purl.obolibrary.org/obo/UBERON_4300001` +#### Removed +- [obsolete maxillary saddle](http://purl.obolibrary.org/obo/UBERON_4300001) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:3000652" + +#### Added +- [obsolete maxillary saddle](http://purl.obolibrary.org/obo/UBERON_4300001) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [fossa maxillaris](http://purl.obolibrary.org/obo/UBERON_3000652) + + +### obsolete median fin `http://purl.obolibrary.org/obo/UBERON_2002276` +#### Removed +- [obsolete median fin](http://purl.obolibrary.org/obo/UBERON_2002276) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "VSAO:0000162" + +#### Added +- [obsolete median fin](http://purl.obolibrary.org/obo/UBERON_2002276) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [VSAO_0000162](http://purl.obolibrary.org/obo/VSAO_0000162) + + +### obsolete median fin skeleton `http://purl.obolibrary.org/obo/UBERON_0002543` +#### Removed +- [obsolete median fin skeleton](http://purl.obolibrary.org/obo/UBERON_0002543) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EFO:0000950" + +- [obsolete median fin skeleton](http://purl.obolibrary.org/obo/UBERON_0002543) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MIAA:0000277" + +- [obsolete median fin skeleton](http://purl.obolibrary.org/obo/UBERON_0002543) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MAT:0000277" + +- [obsolete median fin skeleton](http://purl.obolibrary.org/obo/UBERON_0002543) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "ZFA:0001123" + +#### Added +- [obsolete median fin skeleton](http://purl.obolibrary.org/obo/UBERON_0002543) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MAT_0000277](http://purl.obolibrary.org/obo/MAT_0000277) + +- [obsolete median fin skeleton](http://purl.obolibrary.org/obo/UBERON_0002543) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EFO_0000950](http://purl.obolibrary.org/obo/EFO_0000950) + +- [obsolete median fin skeleton](http://purl.obolibrary.org/obo/UBERON_0002543) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MIAA_0000277](http://purl.obolibrary.org/obo/MIAA_0000277) + +- [obsolete median fin skeleton](http://purl.obolibrary.org/obo/UBERON_0002543) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ZFA_0001123](http://purl.obolibrary.org/obo/ZFA_0001123) + + +### obsolete median fin skeleton `http://purl.obolibrary.org/obo/UBERON_2001123` +#### Removed +- [obsolete median fin skeleton](http://purl.obolibrary.org/obo/UBERON_2001123) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:4000170" + +#### Added +- [obsolete median fin skeleton](http://purl.obolibrary.org/obo/UBERON_2001123) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [median fin skeleton](http://purl.obolibrary.org/obo/UBERON_4000170) + + +### obsolete melanocyte `http://purl.obolibrary.org/obo/UBERON_3010319` +#### Removed +- [obsolete melanocyte](http://purl.obolibrary.org/obo/UBERON_3010319) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000148" + +#### Added +- [obsolete melanocyte](http://purl.obolibrary.org/obo/UBERON_3010319) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000148](http://purl.obolibrary.org/obo/CL_0000148) + + +### obsolete mentum `http://purl.obolibrary.org/obo/UBERON_0003168` +#### Removed +- [obsolete mentum](http://purl.obolibrary.org/obo/UBERON_0003168) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000534" + +- [obsolete mentum](http://purl.obolibrary.org/obo/UBERON_0003168) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004544" + +#### Added +- [obsolete mentum](http://purl.obolibrary.org/obo/UBERON_0003168) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004544](http://purl.obolibrary.org/obo/FBbt_00004544) + +- [obsolete mentum](http://purl.obolibrary.org/obo/UBERON_0003168) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000534](http://purl.obolibrary.org/obo/HAO_0000534) + + +### obsolete mesenchyme from somatopleure `http://purl.obolibrary.org/obo/UBERON_0008919` +#### Removed +- [obsolete mesenchyme from somatopleure](http://purl.obolibrary.org/obo/UBERON_0008919) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0010377" + +#### Added +- [obsolete mesenchyme from somatopleure](http://purl.obolibrary.org/obo/UBERON_0008919) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [mesenchyme from somatopleure](http://purl.obolibrary.org/obo/UBERON_0010377) + + +### obsolete mesenchyme from splanchnopleure `http://purl.obolibrary.org/obo/UBERON_0008920` +#### Removed +- [obsolete mesenchyme from splanchnopleure](http://purl.obolibrary.org/obo/UBERON_0008920) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0010378" + +#### Added +- [obsolete mesenchyme from splanchnopleure](http://purl.obolibrary.org/obo/UBERON_0008920) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [mesenchyme from splanchnopleure](http://purl.obolibrary.org/obo/UBERON_0010378) + + +### obsolete mesodermal cell `http://purl.obolibrary.org/obo/UBERON_3010556` +#### Removed +- [obsolete mesodermal cell](http://purl.obolibrary.org/obo/UBERON_3010556) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000222" + +#### Added +- [obsolete mesodermal cell](http://purl.obolibrary.org/obo/UBERON_3010556) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000222](http://purl.obolibrary.org/obo/CL_0000222) + + +### obsolete mesofurca `http://purl.obolibrary.org/obo/UBERON_0003184` +#### Removed +- [obsolete mesofurca](http://purl.obolibrary.org/obo/UBERON_0003184) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004619" + +- [obsolete mesofurca](http://purl.obolibrary.org/obo/UBERON_0003184) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000547" + +#### Added +- [obsolete mesofurca](http://purl.obolibrary.org/obo/UBERON_0003184) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004619](http://purl.obolibrary.org/obo/FBbt_00004619) + +- [obsolete mesofurca](http://purl.obolibrary.org/obo/UBERON_0003184) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000547](http://purl.obolibrary.org/obo/HAO_0000547) + + +### obsolete mesorchium `http://purl.obolibrary.org/obo/UBERON_3010530` +#### Removed +- [obsolete mesorchium](http://purl.obolibrary.org/obo/UBERON_3010530) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0011879" + +#### Added +- [obsolete mesorchium](http://purl.obolibrary.org/obo/UBERON_3010530) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [mesorchium](http://purl.obolibrary.org/obo/UBERON_0011879) + + +### obsolete metafurca `http://purl.obolibrary.org/obo/UBERON_0003185` +#### Removed +- [obsolete metafurca](http://purl.obolibrary.org/obo/UBERON_0003185) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000592" + +- [obsolete metafurca](http://purl.obolibrary.org/obo/UBERON_0003185) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004638" + +#### Added +- [obsolete metafurca](http://purl.obolibrary.org/obo/UBERON_0003185) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000592](http://purl.obolibrary.org/obo/HAO_0000592) + +- [obsolete metafurca](http://purl.obolibrary.org/obo/UBERON_0003185) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004638](http://purl.obolibrary.org/obo/FBbt_00004638) + + +### obsolete metaplastic ossification `http://purl.obolibrary.org/obo/UBERON_4000142` +#### Removed +- [obsolete metaplastic ossification](http://purl.obolibrary.org/obo/UBERON_4000142) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "GO:0036074" + +#### Added +- [obsolete metaplastic ossification](http://purl.obolibrary.org/obo/UBERON_4000142) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [GO_0036074](http://purl.obolibrary.org/obo/GO_0036074) + + +### obsolete microfilament `http://purl.obolibrary.org/obo/UBERON_0003003` +#### Removed +- [obsolete microfilament](http://purl.obolibrary.org/obo/UBERON_0003003) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MESH:A11.284.195.190.750.510" + +- [obsolete microfilament](http://purl.obolibrary.org/obo/UBERON_0003003) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NCIT:C13255" + +- [obsolete microfilament](http://purl.obolibrary.org/obo/UBERON_0003003) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UMLS:C0025979" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "ncithesaurus:Actin_Filament" + +- [obsolete microfilament](http://purl.obolibrary.org/obo/UBERON_0003003) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GAID:1080" + +- [obsolete microfilament](http://purl.obolibrary.org/obo/UBERON_0003003) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GO:0005884" + +- [obsolete microfilament](http://purl.obolibrary.org/obo/UBERON_0003003) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NIF_Subcellular:sao2006047981" + +- [obsolete microfilament](http://purl.obolibrary.org/obo/UBERON_0003003) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:63850" + +#### Added +- [obsolete microfilament](http://purl.obolibrary.org/obo/UBERON_0003003) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [UMLS_C0025979](http://purl.obolibrary.org/obo/UMLS_C0025979) + - [source](http://www.geneontology.org/formats/oboInOwl#source) "ncithesaurus:Actin_Filament" + +- [obsolete microfilament](http://purl.obolibrary.org/obo/UBERON_0003003) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NIF_Subcellular_sao2006047981](http://purl.obolibrary.org/obo/NIF_Subcellular_sao2006047981) + +- [obsolete microfilament](http://purl.obolibrary.org/obo/UBERON_0003003) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MESH_A11.284.195.190.750.510](http://purl.obolibrary.org/obo/MESH_A11.284.195.190.750.510) + +- [obsolete microfilament](http://purl.obolibrary.org/obo/UBERON_0003003) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GAID_1080](http://purl.obolibrary.org/obo/GAID_1080) + +- [obsolete microfilament](http://purl.obolibrary.org/obo/UBERON_0003003) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_63850](http://purl.obolibrary.org/obo/FMA_63850) + +- [obsolete microfilament](http://purl.obolibrary.org/obo/UBERON_0003003) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NCIT_C13255](http://purl.obolibrary.org/obo/NCIT_C13255) + +- [obsolete microfilament](http://purl.obolibrary.org/obo/UBERON_0003003) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GO_0005884](http://purl.obolibrary.org/obo/GO_0005884) + + +### obsolete midbrain neural fold `http://purl.obolibrary.org/obo/UBERON_0005264` +#### Removed +- [obsolete midbrain neural fold](http://purl.obolibrary.org/obo/UBERON_0005264) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "VHOG:0000793" + +#### Added +- [obsolete midbrain neural fold](http://purl.obolibrary.org/obo/UBERON_0005264) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [VHOG_0000793](http://purl.obolibrary.org/obo/VHOG_0000793) + + +### obsolete midbrain vesicle `http://purl.obolibrary.org/obo/UBERON_0009131` +#### Removed +- [obsolete midbrain vesicle](http://purl.obolibrary.org/obo/UBERON_0009131) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "SCTID:361481005" + +- [obsolete midbrain vesicle](http://purl.obolibrary.org/obo/UBERON_0009131) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EHDAA2:0001103" + +#### Added +- [obsolete midbrain vesicle](http://purl.obolibrary.org/obo/UBERON_0009131) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [SCTID_361481005](http://purl.obolibrary.org/obo/SCTID_361481005) + +- [obsolete midbrain vesicle](http://purl.obolibrary.org/obo/UBERON_0009131) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EHDAA2_0001103](http://purl.obolibrary.org/obo/EHDAA2_0001103) + + +### obsolete middle cavity `http://purl.obolibrary.org/obo/UBERON_3010156` +#### Removed +- [obsolete middle cavity](http://purl.obolibrary.org/obo/UBERON_3010156) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:3000087" + +#### Added +- [obsolete middle cavity](http://purl.obolibrary.org/obo/UBERON_3010156) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [cavum medius](http://purl.obolibrary.org/obo/UBERON_3000087) + + +### obsolete middle temporal area `http://purl.obolibrary.org/obo/UBERON_0004685` +#### Removed +- [obsolete middle temporal area](http://purl.obolibrary.org/obo/UBERON_0004685) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0013552" + +- [obsolete middle temporal area](http://purl.obolibrary.org/obo/UBERON_0004685) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:20090308" + +#### Added +- [obsolete middle temporal area](http://purl.obolibrary.org/obo/UBERON_0004685) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [Brodmann (1909) area 21](http://purl.obolibrary.org/obo/UBERON_0013552) + +- [obsolete middle temporal area](http://purl.obolibrary.org/obo/UBERON_0004685) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_20090308](http://purl.obolibrary.org/obo/NLXANAT_20090308) + + +### obsolete mitochondrial aggregate `http://purl.obolibrary.org/obo/UBERON_3010306` +#### Removed +- [obsolete mitochondrial aggregate](http://purl.obolibrary.org/obo/UBERON_3010306) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "GO:0032019" + +#### Added +- [obsolete mitochondrial aggregate](http://purl.obolibrary.org/obo/UBERON_3010306) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [GO_0032019](http://purl.obolibrary.org/obo/GO_0032019) + + +### obsolete mode of ossification `http://purl.obolibrary.org/obo/UBERON_4000002` +#### Removed +- [obsolete mode of ossification](http://purl.obolibrary.org/obo/UBERON_4000002) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "GO:0001503" + +#### Added +- [obsolete mode of ossification](http://purl.obolibrary.org/obo/UBERON_4000002) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [GO_0001503](http://purl.obolibrary.org/obo/GO_0001503) + + +### obsolete motor nerve `http://purl.obolibrary.org/obo/UBERON_0001026` +#### Removed +- [obsolete motor nerve](http://purl.obolibrary.org/obo/UBERON_0001026) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0006798" + +#### Added +- [obsolete motor nerve](http://purl.obolibrary.org/obo/UBERON_0001026) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [efferent nerve](http://purl.obolibrary.org/obo/UBERON_0006798) + + +### obsolete mouthpart `http://purl.obolibrary.org/obo/UBERON_0003163` +#### Removed +- [obsolete mouthpart](http://purl.obolibrary.org/obo/UBERON_0003163) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004520" + +- [obsolete mouthpart](http://purl.obolibrary.org/obo/UBERON_0003163) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000639" + +#### Added +- [obsolete mouthpart](http://purl.obolibrary.org/obo/UBERON_0003163) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000639](http://purl.obolibrary.org/obo/HAO_0000639) + +- [obsolete mouthpart](http://purl.obolibrary.org/obo/UBERON_0003163) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004520](http://purl.obolibrary.org/obo/FBbt_00004520) + + +### obsolete muscle of body wall `http://purl.obolibrary.org/obo/UBERON_0003896` +#### Removed +- [obsolete muscle of body wall](http://purl.obolibrary.org/obo/UBERON_0003896) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "ANISEED:1235296" + +- [obsolete muscle of body wall](http://purl.obolibrary.org/obo/UBERON_0003896) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "WBbt:0005813" + +- [obsolete muscle of body wall](http://purl.obolibrary.org/obo/UBERON_0003896) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0004462" + +- [obsolete muscle of body wall](http://purl.obolibrary.org/obo/UBERON_0003896) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BTO:0001863" + +#### Added +- [obsolete muscle of body wall](http://purl.obolibrary.org/obo/UBERON_0003896) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [WBbt_0005813](http://purl.obolibrary.org/obo/WBbt_0005813) + +- [obsolete muscle of body wall](http://purl.obolibrary.org/obo/UBERON_0003896) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ANISEED_1235296](http://purl.obolibrary.org/obo/ANISEED_1235296) + +- [obsolete muscle of body wall](http://purl.obolibrary.org/obo/UBERON_0003896) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [musculature of body wall](http://purl.obolibrary.org/obo/UBERON_0004462) + +- [obsolete muscle of body wall](http://purl.obolibrary.org/obo/UBERON_0003896) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BTO_0001863](http://purl.obolibrary.org/obo/BTO_0001863) + + +### obsolete musculature of thorax `http://purl.obolibrary.org/obo/UBERON_0004472` +#### Removed +- [obsolete musculature of thorax](http://purl.obolibrary.org/obo/UBERON_0004472) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0004464" + +- [obsolete musculature of thorax](http://purl.obolibrary.org/obo/UBERON_0004472) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:74779" + +#### Added +- [obsolete musculature of thorax](http://purl.obolibrary.org/obo/UBERON_0004472) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_74779](http://purl.obolibrary.org/obo/FMA_74779) + +- [obsolete musculature of thorax](http://purl.obolibrary.org/obo/UBERON_0004472) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [musculature of thorax](http://purl.obolibrary.org/obo/UBERON_0004464) + + +### obsolete musculus obliquus inferior `http://purl.obolibrary.org/obo/UBERON_3010117` +#### Removed +- [obsolete musculus obliquus inferior](http://purl.obolibrary.org/obo/UBERON_3010117) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0006320" + +#### Added +- [obsolete musculus obliquus inferior](http://purl.obolibrary.org/obo/UBERON_3010117) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [inferior oblique extraocular muscle](http://purl.obolibrary.org/obo/UBERON_0006320) + + +### obsolete musculus rectus inferior `http://purl.obolibrary.org/obo/UBERON_3010101` +#### Removed +- [obsolete musculus rectus inferior](http://purl.obolibrary.org/obo/UBERON_3010101) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0006322" + +#### Added +- [obsolete musculus rectus inferior](http://purl.obolibrary.org/obo/UBERON_3010101) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [inferior rectus extraocular muscle](http://purl.obolibrary.org/obo/UBERON_0006322) + + +### obsolete musculus rectus medialis `http://purl.obolibrary.org/obo/UBERON_3010113` +#### Removed +- [obsolete musculus rectus medialis](http://purl.obolibrary.org/obo/UBERON_3010113) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0001602" + +#### Added +- [obsolete musculus rectus medialis](http://purl.obolibrary.org/obo/UBERON_3010113) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [medial rectus extraocular muscle](http://purl.obolibrary.org/obo/UBERON_0001602) + + +### obsolete musculus rectus superior `http://purl.obolibrary.org/obo/UBERON_3010099` +#### Removed +- [obsolete musculus rectus superior](http://purl.obolibrary.org/obo/UBERON_3010099) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0006323" + +#### Added +- [obsolete musculus rectus superior](http://purl.obolibrary.org/obo/UBERON_3010099) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [superior rectus extraocular muscle](http://purl.obolibrary.org/obo/UBERON_0006323) + + +### obsolete myelin membrane `http://purl.obolibrary.org/obo/UBERON_0000346` +#### Removed +- [obsolete myelin membrane](http://purl.obolibrary.org/obo/UBERON_0000346) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:73417" + +- [obsolete myelin membrane](http://purl.obolibrary.org/obo/UBERON_0000346) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BTO:0000895" + +#### Added +- [obsolete myelin membrane](http://purl.obolibrary.org/obo/UBERON_0000346) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BTO_0000895](http://purl.obolibrary.org/obo/BTO_0000895) + +- [obsolete myelin membrane](http://purl.obolibrary.org/obo/UBERON_0000346) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_73417](http://purl.obolibrary.org/obo/FMA_73417) + + +### obsolete myoblast `http://purl.obolibrary.org/obo/UBERON_3010313` +#### Removed +- [obsolete myoblast](http://purl.obolibrary.org/obo/UBERON_3010313) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000056" + +#### Added +- [obsolete myoblast](http://purl.obolibrary.org/obo/UBERON_3010313) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000056](http://purl.obolibrary.org/obo/CL_0000056) + + +### obsolete natural killer cell `http://purl.obolibrary.org/obo/UBERON_3010310` +#### Removed +- [obsolete natural killer cell](http://purl.obolibrary.org/obo/UBERON_3010310) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000623" + +#### Added +- [obsolete natural killer cell](http://purl.obolibrary.org/obo/UBERON_3010310) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000623](http://purl.obolibrary.org/obo/CL_0000623) + + +### obsolete neck of humerus `http://purl.obolibrary.org/obo/UBERON_0018669` +#### Removed +- [obsolete neck of humerus](http://purl.obolibrary.org/obo/UBERON_0018669) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:4200172" + +#### Added +- [obsolete neck of humerus](http://purl.obolibrary.org/obo/UBERON_0018669) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [neck of humerus](http://purl.obolibrary.org/obo/UBERON_4200172) + + +### obsolete nematocyst `http://purl.obolibrary.org/obo/UBERON_0008278` +#### Removed +- [obsolete nematocyst](http://purl.obolibrary.org/obo/UBERON_0008278) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BTO:0000918" + +#### Added +- [obsolete nematocyst](http://purl.obolibrary.org/obo/UBERON_0008278) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BTO_0000918](http://purl.obolibrary.org/obo/BTO_0000918) + + +### obsolete neostriatum `http://purl.obolibrary.org/obo/UBERON_0002777` +#### Removed +- [obsolete neostriatum](http://purl.obolibrary.org/obo/UBERON_0002777) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1672" + +- [obsolete neostriatum](http://purl.obolibrary.org/obo/UBERON_0002777) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:77617" + +#### Added +- [obsolete neostriatum](http://purl.obolibrary.org/obo/UBERON_0002777) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1672](http://purl.obolibrary.org/obo/BIRNLEX_1672) + +- [obsolete neostriatum](http://purl.obolibrary.org/obo/UBERON_0002777) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_77617](http://purl.obolibrary.org/obo/FMA_77617) + + +### obsolete nerve of central nervous system `http://purl.obolibrary.org/obo/UBERON_0003266` +#### Removed +- [obsolete nerve of central nervous system](http://purl.obolibrary.org/obo/UBERON_0003266) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EMAPA:17263" + +- [obsolete nerve of central nervous system](http://purl.obolibrary.org/obo/UBERON_0003266) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EHDAA:2851" + +#### Added +- [obsolete nerve of central nervous system](http://purl.obolibrary.org/obo/UBERON_0003266) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EMAPA_17263](http://purl.obolibrary.org/obo/EMAPA_17263) + +- [obsolete nerve of central nervous system](http://purl.obolibrary.org/obo/UBERON_0003266) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EHDAA_2851](http://purl.obolibrary.org/obo/EHDAA_2851) + + +### obsolete neurite `http://purl.obolibrary.org/obo/UBERON_0001024` +#### Removed +- [obsolete neurite](http://purl.obolibrary.org/obo/UBERON_0001024) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GAID:751" + +- [obsolete neurite](http://purl.obolibrary.org/obo/UBERON_0001024) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NIF_Subcellular:sao-867568886" + +- [obsolete neurite](http://purl.obolibrary.org/obo/UBERON_0001024) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GO:0043005" + +- [obsolete neurite](http://purl.obolibrary.org/obo/UBERON_0001024) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MESH:A08.663.256.500" + +- [obsolete neurite](http://purl.obolibrary.org/obo/UBERON_0001024) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00005113" + +- [obsolete neurite](http://purl.obolibrary.org/obo/UBERON_0001024) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:61814" + +#### Added +- [obsolete neurite](http://purl.obolibrary.org/obo/UBERON_0001024) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_61814](http://purl.obolibrary.org/obo/FMA_61814) + +- [obsolete neurite](http://purl.obolibrary.org/obo/UBERON_0001024) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GO_0043005](http://purl.obolibrary.org/obo/GO_0043005) + +- [obsolete neurite](http://purl.obolibrary.org/obo/UBERON_0001024) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00005113](http://purl.obolibrary.org/obo/FBbt_00005113) + +- [obsolete neurite](http://purl.obolibrary.org/obo/UBERON_0001024) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GAID_751](http://purl.obolibrary.org/obo/GAID_751) + +- [obsolete neurite](http://purl.obolibrary.org/obo/UBERON_0001024) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MESH_A08.663.256.500](http://purl.obolibrary.org/obo/MESH_A08.663.256.500) + +- [obsolete neurite](http://purl.obolibrary.org/obo/UBERON_0001024) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NIF_Subcellular_sao-867568886](http://purl.obolibrary.org/obo/NIF_Subcellular_sao-867568886) + + +### obsolete neurofilament `http://purl.obolibrary.org/obo/UBERON_0002986` +#### Removed +- [obsolete neurofilament](http://purl.obolibrary.org/obo/UBERON_0002986) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "GO:0005883" + +- [obsolete neurofilament](http://purl.obolibrary.org/obo/UBERON_0002986) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NIF_Subcellular:sao1316272517" + +- [obsolete neurofilament](http://purl.obolibrary.org/obo/UBERON_0002986) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UMLS:C0027834" + +- [obsolete neurofilament](http://purl.obolibrary.org/obo/UBERON_0002986) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:63859" + +- [obsolete neurofilament](http://purl.obolibrary.org/obo/UBERON_0002986) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NCIT:C13263" + +- [obsolete neurofilament](http://purl.obolibrary.org/obo/UBERON_0002986) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:846" + +#### Added +- [obsolete neurofilament](http://purl.obolibrary.org/obo/UBERON_0002986) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_846](http://purl.obolibrary.org/obo/BIRNLEX_846) + +- [obsolete neurofilament](http://purl.obolibrary.org/obo/UBERON_0002986) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [UMLS_C0027834](http://purl.obolibrary.org/obo/UMLS_C0027834) + +- [obsolete neurofilament](http://purl.obolibrary.org/obo/UBERON_0002986) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [GO_0005883](http://purl.obolibrary.org/obo/GO_0005883) + +- [obsolete neurofilament](http://purl.obolibrary.org/obo/UBERON_0002986) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NCIT_C13263](http://purl.obolibrary.org/obo/NCIT_C13263) + +- [obsolete neurofilament](http://purl.obolibrary.org/obo/UBERON_0002986) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NIF_Subcellular_sao1316272517](http://purl.obolibrary.org/obo/NIF_Subcellular_sao1316272517) + +- [obsolete neurofilament](http://purl.obolibrary.org/obo/UBERON_0002986) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_63859](http://purl.obolibrary.org/obo/FMA_63859) + + +### obsolete neuromuscular junction `http://purl.obolibrary.org/obo/UBERON_0001029` +#### Removed +- [obsolete neuromuscular junction](http://purl.obolibrary.org/obo/UBERON_0001029) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00005142" + +- [obsolete neuromuscular junction](http://purl.obolibrary.org/obo/UBERON_0001029) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "GO:0031594" + +- [obsolete neuromuscular junction](http://purl.obolibrary.org/obo/UBERON_0001029) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MESH:D009469" + +- [obsolete neuromuscular junction](http://purl.obolibrary.org/obo/UBERON_0001029) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:61803" + +- [obsolete neuromuscular junction](http://purl.obolibrary.org/obo/UBERON_0001029) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NIF_Subcellular:sao1124888485" + +- [obsolete neuromuscular junction](http://purl.obolibrary.org/obo/UBERON_0001029) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GAID:809" + +#### Added +- [obsolete neuromuscular junction](http://purl.obolibrary.org/obo/UBERON_0001029) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MESH_D009469](http://purl.obolibrary.org/obo/MESH_D009469) + +- [obsolete neuromuscular junction](http://purl.obolibrary.org/obo/UBERON_0001029) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [GO_0031594](http://purl.obolibrary.org/obo/GO_0031594) + +- [obsolete neuromuscular junction](http://purl.obolibrary.org/obo/UBERON_0001029) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00005142](http://purl.obolibrary.org/obo/FBbt_00005142) + +- [obsolete neuromuscular junction](http://purl.obolibrary.org/obo/UBERON_0001029) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_61803](http://purl.obolibrary.org/obo/FMA_61803) + +- [obsolete neuromuscular junction](http://purl.obolibrary.org/obo/UBERON_0001029) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NIF_Subcellular_sao1124888485](http://purl.obolibrary.org/obo/NIF_Subcellular_sao1124888485) + +- [obsolete neuromuscular junction](http://purl.obolibrary.org/obo/UBERON_0001029) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GAID_809](http://purl.obolibrary.org/obo/GAID_809) + + +### obsolete neuron `http://purl.obolibrary.org/obo/UBERON_3010315` +#### Removed +- [obsolete neuron](http://purl.obolibrary.org/obo/UBERON_3010315) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000540" + +#### Added +- [obsolete neuron](http://purl.obolibrary.org/obo/UBERON_3010315) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000540](http://purl.obolibrary.org/obo/CL_0000540) + + +### obsolete node of ranvier `http://purl.obolibrary.org/obo/UBERON_0002611` +#### Removed +- [obsolete node of ranvier](http://purl.obolibrary.org/obo/UBERON_0002611) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GO:0033268" + +- [obsolete node of ranvier](http://purl.obolibrary.org/obo/UBERON_0002611) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1152" + +- [obsolete node of ranvier](http://purl.obolibrary.org/obo/UBERON_0002611) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:67368" + +- [obsolete node of ranvier](http://purl.obolibrary.org/obo/UBERON_0002611) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NCIT:C33172" + +- [obsolete node of ranvier](http://purl.obolibrary.org/obo/UBERON_0002611) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GAID:748" + +#### Added +- [obsolete node of ranvier](http://purl.obolibrary.org/obo/UBERON_0002611) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GO_0033268](http://purl.obolibrary.org/obo/GO_0033268) + +- [obsolete node of ranvier](http://purl.obolibrary.org/obo/UBERON_0002611) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NCIT_C33172](http://purl.obolibrary.org/obo/NCIT_C33172) + +- [obsolete node of ranvier](http://purl.obolibrary.org/obo/UBERON_0002611) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1152](http://purl.obolibrary.org/obo/BIRNLEX_1152) + +- [obsolete node of ranvier](http://purl.obolibrary.org/obo/UBERON_0002611) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GAID_748](http://purl.obolibrary.org/obo/GAID_748) + +- [obsolete node of ranvier](http://purl.obolibrary.org/obo/UBERON_0002611) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_67368](http://purl.obolibrary.org/obo/FMA_67368) + + +### obsolete nodulus of cerebellum `http://purl.obolibrary.org/obo/UBERON_0002311` +#### Removed +- [obsolete nodulus of cerebellum](http://purl.obolibrary.org/obo/UBERON_0002311) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0004083" + +#### Added +- [obsolete nodulus of cerebellum](http://purl.obolibrary.org/obo/UBERON_0002311) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [cerebellum vermis lobule X](http://purl.obolibrary.org/obo/UBERON_0004083) + + +### obsolete non-terminally differentiated odontoblast `http://purl.obolibrary.org/obo/UBERON_4000095` +#### Removed +- [obsolete non-terminally differentiated odontoblast](http://purl.obolibrary.org/obo/UBERON_4000095) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:00007012" + +#### Added +- [obsolete non-terminally differentiated odontoblast](http://purl.obolibrary.org/obo/UBERON_4000095) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_00007012](http://purl.obolibrary.org/obo/CL_00007012) + + +### obsolete non-terminally differentiated osteoblast `http://purl.obolibrary.org/obo/UBERON_4000117` +#### Removed +- [obsolete non-terminally differentiated osteoblast](http://purl.obolibrary.org/obo/UBERON_4000117) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0001040" + +#### Added +- [obsolete non-terminally differentiated osteoblast](http://purl.obolibrary.org/obo/UBERON_4000117) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0001040](http://purl.obolibrary.org/obo/CL_0001040) + + +### obsolete notochordal cell `http://purl.obolibrary.org/obo/UBERON_4000009` +#### Removed +- [obsolete notochordal cell](http://purl.obolibrary.org/obo/UBERON_4000009) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0007005" + +#### Added +- [obsolete notochordal cell](http://purl.obolibrary.org/obo/UBERON_4000009) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0007005](http://purl.obolibrary.org/obo/CL_0007005) + + +### obsolete notochordal mesodermal cell `http://purl.obolibrary.org/obo/UBERON_4000010` +#### Removed +- [obsolete notochordal mesodermal cell](http://purl.obolibrary.org/obo/UBERON_4000010) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0007006" + +#### Added +- [obsolete notochordal mesodermal cell](http://purl.obolibrary.org/obo/UBERON_4000010) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0007006](http://purl.obolibrary.org/obo/CL_0007006) + + +### obsolete notopleural suture `http://purl.obolibrary.org/obo/UBERON_0003183` +#### Removed +- [obsolete notopleural suture](http://purl.obolibrary.org/obo/UBERON_0003183) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000649" + +- [obsolete notopleural suture](http://purl.obolibrary.org/obo/UBERON_0003183) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004604" + +#### Added +- [obsolete notopleural suture](http://purl.obolibrary.org/obo/UBERON_0003183) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004604](http://purl.obolibrary.org/obo/FBbt_00004604) + +- [obsolete notopleural suture](http://purl.obolibrary.org/obo/UBERON_0003183) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000649](http://purl.obolibrary.org/obo/HAO_0000649) + + +### obsolete nuchal plate of carapace `http://purl.obolibrary.org/obo/UBERON_0011668` +#### Removed +- [obsolete nuchal plate of carapace](http://purl.obolibrary.org/obo/UBERON_0011668) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0011671" + +#### Added +- [obsolete nuchal plate of carapace](http://purl.obolibrary.org/obo/UBERON_0011668) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [nuchal plate of carapace](http://purl.obolibrary.org/obo/UBERON_0011671) + + +### obsolete nucleus motorius of nervi vagi `http://purl.obolibrary.org/obo/UBERON_2000387` +#### Removed +- [obsolete nucleus motorius of nervi vagi](http://purl.obolibrary.org/obo/UBERON_2000387) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0011778" + +#### Added +- [obsolete nucleus motorius of nervi vagi](http://purl.obolibrary.org/obo/UBERON_2000387) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [motor nucleus of vagal nerve](http://purl.obolibrary.org/obo/UBERON_0011778) + + +### obsolete olfactory bulb main of rodent `http://purl.obolibrary.org/obo/UBERON_0023942` +#### Removed +- [obsolete olfactory bulb main of rodent](http://purl.obolibrary.org/obo/UBERON_0023942) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:1005019" + +- [obsolete olfactory bulb main of rodent](http://purl.obolibrary.org/obo/UBERON_0023942) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0009951" + +#### Added +- [obsolete olfactory bulb main of rodent](http://purl.obolibrary.org/obo/UBERON_0023942) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_1005019](http://purl.obolibrary.org/obo/NLXANAT_1005019) + +- [obsolete olfactory bulb main of rodent](http://purl.obolibrary.org/obo/UBERON_0023942) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [main olfactory bulb](http://purl.obolibrary.org/obo/UBERON_0009951) + + +### obsolete olfactory receptor cell `http://purl.obolibrary.org/obo/UBERON_3010159` +#### Removed +- [obsolete olfactory receptor cell](http://purl.obolibrary.org/obo/UBERON_3010159) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000207" + +#### Added +- [obsolete olfactory receptor cell](http://purl.obolibrary.org/obo/UBERON_3010159) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000207](http://purl.obolibrary.org/obo/CL_0000207) + + +### obsolete olfactory support cell `http://purl.obolibrary.org/obo/UBERON_2000688` +#### Removed +- [obsolete olfactory support cell](http://purl.obolibrary.org/obo/UBERON_2000688) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000853" + +#### Added +- [obsolete olfactory support cell](http://purl.obolibrary.org/obo/UBERON_2000688) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000853](http://purl.obolibrary.org/obo/CL_0000853) + + +### obsolete oocyte `http://purl.obolibrary.org/obo/UBERON_3010296` +#### Removed +- [obsolete oocyte](http://purl.obolibrary.org/obo/UBERON_3010296) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000023" + +#### Added +- [obsolete oocyte](http://purl.obolibrary.org/obo/UBERON_3010296) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000023](http://purl.obolibrary.org/obo/CL_0000023) + + +### obsolete oocyte `http://purl.obolibrary.org/obo/UBERON_2001109` +#### Removed +- [obsolete oocyte](http://purl.obolibrary.org/obo/UBERON_2001109) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "CL:0000023" + +#### Added +- [obsolete oocyte](http://purl.obolibrary.org/obo/UBERON_2001109) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [CL_0000023](http://purl.obolibrary.org/obo/CL_0000023) + + +### obsolete oocyte stage I `http://purl.obolibrary.org/obo/UBERON_2001567` +#### Removed +- [obsolete oocyte stage I](http://purl.obolibrary.org/obo/UBERON_2001567) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "CL:0000023" + +#### Added +- [obsolete oocyte stage I](http://purl.obolibrary.org/obo/UBERON_2001567) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [CL_0000023](http://purl.obolibrary.org/obo/CL_0000023) + + +### obsolete oocyte stage II `http://purl.obolibrary.org/obo/UBERON_2001565` +#### Removed +- [obsolete oocyte stage II](http://purl.obolibrary.org/obo/UBERON_2001565) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "CL:0000023" + +#### Added +- [obsolete oocyte stage II](http://purl.obolibrary.org/obo/UBERON_2001565) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [CL_0000023](http://purl.obolibrary.org/obo/CL_0000023) + + +### obsolete oocyte stage III `http://purl.obolibrary.org/obo/UBERON_2001566` +#### Removed +- [obsolete oocyte stage III](http://purl.obolibrary.org/obo/UBERON_2001566) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "CL:0000023" + +#### Added +- [obsolete oocyte stage III](http://purl.obolibrary.org/obo/UBERON_2001566) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [CL_0000023](http://purl.obolibrary.org/obo/CL_0000023) + + +### obsolete oocyte stage IV `http://purl.obolibrary.org/obo/UBERON_2001568` +#### Removed +- [obsolete oocyte stage IV](http://purl.obolibrary.org/obo/UBERON_2001568) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "CL:0000023" + +#### Added +- [obsolete oocyte stage IV](http://purl.obolibrary.org/obo/UBERON_2001568) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [CL_0000023](http://purl.obolibrary.org/obo/CL_0000023) + + +### obsolete oocyte stage V `http://purl.obolibrary.org/obo/UBERON_2001569` +#### Removed +- [obsolete oocyte stage V](http://purl.obolibrary.org/obo/UBERON_2001569) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "CL:0000023" + +#### Added +- [obsolete oocyte stage V](http://purl.obolibrary.org/obo/UBERON_2001569) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [CL_0000023](http://purl.obolibrary.org/obo/CL_0000023) + + +### obsolete opercle bone `http://purl.obolibrary.org/obo/UBERON_4000004` +#### Removed +- [obsolete opercle bone](http://purl.obolibrary.org/obo/UBERON_4000004) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:2000250" + +#### Added +- [obsolete opercle bone](http://purl.obolibrary.org/obo/UBERON_4000004) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [opercle](http://purl.obolibrary.org/obo/UBERON_2000250) + + +### obsolete optic eminence surface ectoderm `http://purl.obolibrary.org/obo/UBERON_0005216` +#### Removed +- [obsolete optic eminence surface ectoderm](http://purl.obolibrary.org/obo/UBERON_0005216) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0005234" + +#### Added +- [obsolete optic eminence surface ectoderm](http://purl.obolibrary.org/obo/UBERON_0005216) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [optic eminence ectoderm](http://purl.obolibrary.org/obo/UBERON_0005234) + + +### obsolete optic nerve head `http://purl.obolibrary.org/obo/UBERON_2002213` +#### Removed +- [obsolete optic nerve head](http://purl.obolibrary.org/obo/UBERON_2002213) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0001783" + +#### Added +- [obsolete optic nerve head](http://purl.obolibrary.org/obo/UBERON_2002213) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [optic disc](http://purl.obolibrary.org/obo/UBERON_0001783) + + +### obsolete orbit `http://purl.obolibrary.org/obo/UBERON_2001967` +#### Removed +- [obsolete orbit](http://purl.obolibrary.org/obo/UBERON_2001967) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "ZFA:0005558" + +#### Added +- [obsolete orbit](http://purl.obolibrary.org/obo/UBERON_2001967) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ZFA_0005558](http://purl.obolibrary.org/obo/ZFA_0005558) + + +### obsolete orbital region `http://purl.obolibrary.org/obo/UBERON_3010220` +#### Removed +- [obsolete orbital region](http://purl.obolibrary.org/obo/UBERON_3010220) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0001697" + +#### Added +- [obsolete orbital region](http://purl.obolibrary.org/obo/UBERON_3010220) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [orbit of skull](http://purl.obolibrary.org/obo/UBERON_0001697) + + +### obsolete os articulare `http://purl.obolibrary.org/obo/UBERON_3000347` +#### Removed +- [obsolete os articulare](http://purl.obolibrary.org/obo/UBERON_3000347) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:2001805" + +#### Added +- [obsolete os articulare](http://purl.obolibrary.org/obo/UBERON_3000347) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [articular bone](http://purl.obolibrary.org/obo/UBERON_2001805) + + +### obsolete otic capsule endochondral element `http://purl.obolibrary.org/obo/UBERON_0015020` +#### Removed +- [obsolete otic capsule endochondral element](http://purl.obolibrary.org/obo/UBERON_0015020) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0004637" + +#### Added +- [obsolete otic capsule endochondral element](http://purl.obolibrary.org/obo/UBERON_0015020) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [otic capsule](http://purl.obolibrary.org/obo/UBERON_0004637) + + +### obsolete otic operculum `http://purl.obolibrary.org/obo/UBERON_3010145` +#### Removed +- [obsolete otic operculum](http://purl.obolibrary.org/obo/UBERON_3010145) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:3010728" + +#### Added +- [obsolete otic operculum](http://purl.obolibrary.org/obo/UBERON_3010145) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [otic opercular element](http://purl.obolibrary.org/obo/UBERON_3010728) + + +### obsolete otocyst epithelium `http://purl.obolibrary.org/obo/UBERON_0005641` +#### Removed +- [obsolete otocyst epithelium](http://purl.obolibrary.org/obo/UBERON_0005641) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EMAPA:16996" + +- [obsolete otocyst epithelium](http://purl.obolibrary.org/obo/UBERON_0005641) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EHDAA2:0001344" + +- [obsolete otocyst epithelium](http://purl.obolibrary.org/obo/UBERON_0005641) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "VHOG:0000986" + +- [obsolete otocyst epithelium](http://purl.obolibrary.org/obo/UBERON_0005641) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EMAPA:16671" + +- [obsolete otocyst epithelium](http://purl.obolibrary.org/obo/UBERON_0005641) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EMAPA:16999" + +- [obsolete otocyst epithelium](http://purl.obolibrary.org/obo/UBERON_0005641) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0003051" + +#### Added +- [obsolete otocyst epithelium](http://purl.obolibrary.org/obo/UBERON_0005641) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EHDAA2_0001344](http://purl.obolibrary.org/obo/EHDAA2_0001344) + +- [obsolete otocyst epithelium](http://purl.obolibrary.org/obo/UBERON_0005641) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EMAPA_16671](http://purl.obolibrary.org/obo/EMAPA_16671) + +- [obsolete otocyst epithelium](http://purl.obolibrary.org/obo/UBERON_0005641) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EMAPA_16999](http://purl.obolibrary.org/obo/EMAPA_16999) + +- [obsolete otocyst epithelium](http://purl.obolibrary.org/obo/UBERON_0005641) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [VHOG_0000986](http://purl.obolibrary.org/obo/VHOG_0000986) + +- [obsolete otocyst epithelium](http://purl.obolibrary.org/obo/UBERON_0005641) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ear vesicle](http://purl.obolibrary.org/obo/UBERON_0003051) + +- [obsolete otocyst epithelium](http://purl.obolibrary.org/obo/UBERON_0005641) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EMAPA_16996](http://purl.obolibrary.org/obo/EMAPA_16996) + + +### obsolete paired fin radial `http://purl.obolibrary.org/obo/UBERON_4400009` +#### Removed +- [obsolete paired fin radial](http://purl.obolibrary.org/obo/UBERON_4400009) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:1500006" + +#### Added +- [obsolete paired fin radial](http://purl.obolibrary.org/obo/UBERON_4400009) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [paired fin radial bone](http://purl.obolibrary.org/obo/UBERON_1500006) + + +### obsolete palatine `http://purl.obolibrary.org/obo/UBERON_2002158` +#### Removed +- [obsolete palatine](http://purl.obolibrary.org/obo/UBERON_2002158) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0001682" + +#### Added +- [obsolete palatine](http://purl.obolibrary.org/obo/UBERON_2002158) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [palatine bone](http://purl.obolibrary.org/obo/UBERON_0001682) + + +### obsolete palatine `http://purl.obolibrary.org/obo/UBERON_3000372` +#### Removed +- [obsolete palatine](http://purl.obolibrary.org/obo/UBERON_3000372) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0001682" + +#### Added +- [obsolete palatine](http://purl.obolibrary.org/obo/UBERON_3000372) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [palatine bone](http://purl.obolibrary.org/obo/UBERON_0001682) + + +### obsolete palatine tooth `http://purl.obolibrary.org/obo/UBERON_3000376` +#### Removed +- [obsolete palatine tooth](http://purl.obolibrary.org/obo/UBERON_3000376) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0012073" + +#### Added +- [obsolete palatine tooth](http://purl.obolibrary.org/obo/UBERON_3000376) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [tooth of palatine bone](http://purl.obolibrary.org/obo/UBERON_0012073) + + +### obsolete paraxial mesenchyme `http://purl.obolibrary.org/obo/UBERON_2000942` +#### Removed +- [obsolete paraxial mesenchyme](http://purl.obolibrary.org/obo/UBERON_2000942) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0003077" + +#### Added +- [obsolete paraxial mesenchyme](http://purl.obolibrary.org/obo/UBERON_2000942) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [paraxial mesoderm](http://purl.obolibrary.org/obo/UBERON_0003077) + + +### obsolete pars anterior `http://purl.obolibrary.org/obo/UBERON_0002431` +#### Removed +- [obsolete pars anterior](http://purl.obolibrary.org/obo/UBERON_0002431) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0006964" + +#### Added +- [obsolete pars anterior](http://purl.obolibrary.org/obo/UBERON_0002431) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [pars distalis of adenohypophysis](http://purl.obolibrary.org/obo/UBERON_0006964) + + +### obsolete pars dentalis of maxilla `http://purl.obolibrary.org/obo/UBERON_3000396` +#### Removed +- [obsolete pars dentalis of maxilla](http://purl.obolibrary.org/obo/UBERON_3000396) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0004527" + +#### Added +- [obsolete pars dentalis of maxilla](http://purl.obolibrary.org/obo/UBERON_3000396) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [alveolar process of maxilla](http://purl.obolibrary.org/obo/UBERON_0004527) + + +### obsolete pars dentalis of premaxilla `http://purl.obolibrary.org/obo/UBERON_3000397` +#### Removed +- [obsolete pars dentalis of premaxilla](http://purl.obolibrary.org/obo/UBERON_3000397) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0034898" + +#### Added +- [obsolete pars dentalis of premaxilla](http://purl.obolibrary.org/obo/UBERON_3000397) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [alveolar ridge of premaxilla](http://purl.obolibrary.org/obo/UBERON_0034898) + + +### obsolete pars nervosa `http://purl.obolibrary.org/obo/UBERON_3010538` +#### Removed +- [obsolete pars nervosa](http://purl.obolibrary.org/obo/UBERON_3010538) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0003217" + +#### Added +- [obsolete pars nervosa](http://purl.obolibrary.org/obo/UBERON_3010538) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [neural lobe of neurohypophysis](http://purl.obolibrary.org/obo/UBERON_0003217) + + +### obsolete pars palatina of maxilla `http://purl.obolibrary.org/obo/UBERON_3000413` +#### Removed +- [obsolete pars palatina of maxilla](http://purl.obolibrary.org/obo/UBERON_3000413) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0005871" + +#### Added +- [obsolete pars palatina of maxilla](http://purl.obolibrary.org/obo/UBERON_3000413) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [palatine process of maxilla](http://purl.obolibrary.org/obo/UBERON_0005871) + + +### obsolete pars palatina of premaxilla `http://purl.obolibrary.org/obo/UBERON_3000414` +#### Removed +- [obsolete pars palatina of premaxilla](http://purl.obolibrary.org/obo/UBERON_3000414) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0034900" + +#### Added +- [obsolete pars palatina of premaxilla](http://purl.obolibrary.org/obo/UBERON_3000414) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [palatine process of premaxilla](http://purl.obolibrary.org/obo/UBERON_0034900) + + +### obsolete part of neuraxis `http://purl.obolibrary.org/obo/UBERON_0025619` +#### Removed +- [obsolete part of neuraxis](http://purl.obolibrary.org/obo/UBERON_0025619) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:1010010" + +#### Added +- [obsolete part of neuraxis](http://purl.obolibrary.org/obo/UBERON_0025619) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_1010010](http://purl.obolibrary.org/obo/NLXANAT_1010010) + + +### obsolete pectoral fin lepidotrichium `http://purl.obolibrary.org/obo/UBERON_2001551` +#### Removed +- [obsolete pectoral fin lepidotrichium](http://purl.obolibrary.org/obo/UBERON_2001551) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:4000175" + +#### Added +- [obsolete pectoral fin lepidotrichium](http://purl.obolibrary.org/obo/UBERON_2001551) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [pectoral fin lepidotrichium](http://purl.obolibrary.org/obo/UBERON_4000175) + + +### obsolete pedal claws `http://purl.obolibrary.org/obo/UBERON_4100008` +#### Removed +- [obsolete pedal claws](http://purl.obolibrary.org/obo/UBERON_4100008) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0009567" + +#### Added +- [obsolete pedal claws](http://purl.obolibrary.org/obo/UBERON_4100008) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [nail of pedal digit](http://purl.obolibrary.org/obo/UBERON_0009567) + + +### obsolete pedicel `http://purl.obolibrary.org/obo/UBERON_0003200` +#### Removed +- [obsolete pedicel](http://purl.obolibrary.org/obo/UBERON_0003200) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000706" + +- [obsolete pedicel](http://purl.obolibrary.org/obo/UBERON_0003200) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004920" + +#### Added +- [obsolete pedicel](http://purl.obolibrary.org/obo/UBERON_0003200) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004920](http://purl.obolibrary.org/obo/FBbt_00004920) + +- [obsolete pedicel](http://purl.obolibrary.org/obo/UBERON_0003200) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000706](http://purl.obolibrary.org/obo/HAO_0000706) + + +### obsolete pelvic fin lepidotrichium `http://purl.obolibrary.org/obo/UBERON_2001552` +#### Removed +- [obsolete pelvic fin lepidotrichium](http://purl.obolibrary.org/obo/UBERON_2001552) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:4000173" + +#### Added +- [obsolete pelvic fin lepidotrichium](http://purl.obolibrary.org/obo/UBERON_2001552) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [pelvic fin lepidotrichium](http://purl.obolibrary.org/obo/UBERON_4000173) + + +### obsolete perichondral ossification `http://purl.obolibrary.org/obo/UBERON_4000144` +#### Removed +- [obsolete perichondral ossification](http://purl.obolibrary.org/obo/UBERON_4000144) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "GO:0036073" + +#### Added +- [obsolete perichondral ossification](http://purl.obolibrary.org/obo/UBERON_4000144) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [GO_0036073](http://purl.obolibrary.org/obo/GO_0036073) + + +### obsolete peripheral nerve `http://purl.obolibrary.org/obo/UBERON_0002003` +#### Removed +- [obsolete peripheral nerve](http://purl.obolibrary.org/obo/UBERON_0002003) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0001021" + +#### Added +- [obsolete peripheral nerve](http://purl.obolibrary.org/obo/UBERON_0002003) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [nerve](http://purl.obolibrary.org/obo/UBERON_0001021) + + +### obsolete peripheral part of autonomous nervous system `http://purl.obolibrary.org/obo/UBERON_0005433` +#### Removed +- [obsolete peripheral part of autonomous nervous system](http://purl.obolibrary.org/obo/UBERON_0005433) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "SCTID:429921001" + +- [obsolete peripheral part of autonomous nervous system](http://purl.obolibrary.org/obo/UBERON_0005433) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:65553" + +#### Added +- [obsolete peripheral part of autonomous nervous system](http://purl.obolibrary.org/obo/UBERON_0005433) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_65553](http://purl.obolibrary.org/obo/FMA_65553) + +- [obsolete peripheral part of autonomous nervous system](http://purl.obolibrary.org/obo/UBERON_0005433) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [SCTID_429921001](http://purl.obolibrary.org/obo/SCTID_429921001) + + +### obsolete peritreme `http://purl.obolibrary.org/obo/UBERON_0003147` +#### Removed +- [obsolete peritreme](http://purl.obolibrary.org/obo/UBERON_0003147) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00003121" + +- [obsolete peritreme](http://purl.obolibrary.org/obo/UBERON_0003147) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000712" + +#### Added +- [obsolete peritreme](http://purl.obolibrary.org/obo/UBERON_0003147) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00003121](http://purl.obolibrary.org/obo/FBbt_00003121) + +- [obsolete peritreme](http://purl.obolibrary.org/obo/UBERON_0003147) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000712](http://purl.obolibrary.org/obo/HAO_0000712) + + +### obsolete pharyngeal nerve `http://purl.obolibrary.org/obo/UBERON_0000960` +#### Removed +- [obsolete pharyngeal nerve](http://purl.obolibrary.org/obo/UBERON_0000960) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004021" + +- [obsolete pharyngeal nerve](http://purl.obolibrary.org/obo/UBERON_0000960) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "WBbt:0005441" + +- [obsolete pharyngeal nerve](http://purl.obolibrary.org/obo/UBERON_0000960) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:77524" + +#### Added +- [obsolete pharyngeal nerve](http://purl.obolibrary.org/obo/UBERON_0000960) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004021](http://purl.obolibrary.org/obo/FBbt_00004021) + +- [obsolete pharyngeal nerve](http://purl.obolibrary.org/obo/UBERON_0000960) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [WBbt_0005441](http://purl.obolibrary.org/obo/WBbt_0005441) + +- [obsolete pharyngeal nerve](http://purl.obolibrary.org/obo/UBERON_0000960) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_77524](http://purl.obolibrary.org/obo/FMA_77524) + + +### obsolete photoreceptor `http://purl.obolibrary.org/obo/UBERON_0001034` +#### Removed +- [obsolete photoreceptor](http://purl.obolibrary.org/obo/UBERON_0001034) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:85613" + +- [obsolete photoreceptor](http://purl.obolibrary.org/obo/UBERON_0001034) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "CL:0000210" + +- [obsolete photoreceptor](http://purl.obolibrary.org/obo/UBERON_0001034) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GAID:778" + +- [obsolete photoreceptor](http://purl.obolibrary.org/obo/UBERON_0001034) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00005162" + +#### Added +- [obsolete photoreceptor](http://purl.obolibrary.org/obo/UBERON_0001034) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00005162](http://purl.obolibrary.org/obo/FBbt_00005162) + +- [obsolete photoreceptor](http://purl.obolibrary.org/obo/UBERON_0001034) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GAID_778](http://purl.obolibrary.org/obo/GAID_778) + +- [obsolete photoreceptor](http://purl.obolibrary.org/obo/UBERON_0001034) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [CL_0000210](http://purl.obolibrary.org/obo/CL_0000210) + +- [obsolete photoreceptor](http://purl.obolibrary.org/obo/UBERON_0001034) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_85613](http://purl.obolibrary.org/obo/FMA_85613) + + +### obsolete phragma `http://purl.obolibrary.org/obo/UBERON_0003152` +#### Removed +- [obsolete phragma](http://purl.obolibrary.org/obo/UBERON_0003152) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004480" + +- [obsolete phragma](http://purl.obolibrary.org/obo/UBERON_0003152) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000716" + +#### Added +- [obsolete phragma](http://purl.obolibrary.org/obo/UBERON_0003152) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004480](http://purl.obolibrary.org/obo/FBbt_00004480) + +- [obsolete phragma](http://purl.obolibrary.org/obo/UBERON_0003152) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000716](http://purl.obolibrary.org/obo/HAO_0000716) + + +### obsolete pigment cell `http://purl.obolibrary.org/obo/UBERON_3010317` +#### Removed +- [obsolete pigment cell](http://purl.obolibrary.org/obo/UBERON_3010317) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000147" + +#### Added +- [obsolete pigment cell](http://purl.obolibrary.org/obo/UBERON_3010317) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000147](http://purl.obolibrary.org/obo/CL_0000147) + + +### obsolete pigment layer `http://purl.obolibrary.org/obo/UBERON_3010350` +#### Removed +- [obsolete pigment layer](http://purl.obolibrary.org/obo/UBERON_3010350) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0007625" + +#### Added +- [obsolete pigment layer](http://purl.obolibrary.org/obo/UBERON_3010350) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [pigment epithelium of eye](http://purl.obolibrary.org/obo/UBERON_0007625) + + +### obsolete pleural suture `http://purl.obolibrary.org/obo/UBERON_0003182` +#### Removed +- [obsolete pleural suture](http://purl.obolibrary.org/obo/UBERON_0003182) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000725" + +- [obsolete pleural suture](http://purl.obolibrary.org/obo/UBERON_0003182) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004603" + +#### Added +- [obsolete pleural suture](http://purl.obolibrary.org/obo/UBERON_0003182) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000725](http://purl.obolibrary.org/obo/HAO_0000725) + +- [obsolete pleural suture](http://purl.obolibrary.org/obo/UBERON_0003182) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004603](http://purl.obolibrary.org/obo/FBbt_00004603) + + +### obsolete pleural wing process `http://purl.obolibrary.org/obo/UBERON_0003179` +#### Removed +- [obsolete pleural wing process](http://purl.obolibrary.org/obo/UBERON_0003179) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000726" + +- [obsolete pleural wing process](http://purl.obolibrary.org/obo/UBERON_0003179) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004595" + +#### Added +- [obsolete pleural wing process](http://purl.obolibrary.org/obo/UBERON_0003179) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004595](http://purl.obolibrary.org/obo/FBbt_00004595) + +- [obsolete pleural wing process](http://purl.obolibrary.org/obo/UBERON_0003179) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000726](http://purl.obolibrary.org/obo/HAO_0000726) + + +### obsolete podocyte `http://purl.obolibrary.org/obo/UBERON_3010321` +#### Removed +- [obsolete podocyte](http://purl.obolibrary.org/obo/UBERON_3010321) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000653" + +#### Added +- [obsolete podocyte](http://purl.obolibrary.org/obo/UBERON_3010321) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000653](http://purl.obolibrary.org/obo/CL_0000653) + + +### obsolete podocyte foot process `http://purl.obolibrary.org/obo/UBERON_0004355` +#### Removed +- [obsolete podocyte foot process](http://purl.obolibrary.org/obo/UBERON_0004355) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "GO:0098846" + +#### Added +- [obsolete podocyte foot process](http://purl.obolibrary.org/obo/UBERON_0004355) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [GO_0098846](http://purl.obolibrary.org/obo/GO_0098846) + + +### obsolete polar body `http://purl.obolibrary.org/obo/UBERON_3010307` +#### Removed +- [obsolete polar body](http://purl.obolibrary.org/obo/UBERON_3010307) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0002090" + +#### Added +- [obsolete polar body](http://purl.obolibrary.org/obo/UBERON_3010307) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0002090](http://purl.obolibrary.org/obo/CL_0002090) + + +### obsolete polychromatophilic erythroblast `http://purl.obolibrary.org/obo/UBERON_2005241` +#### Removed +- [obsolete polychromatophilic erythroblast](http://purl.obolibrary.org/obo/UBERON_2005241) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000550" + +#### Added +- [obsolete polychromatophilic erythroblast](http://purl.obolibrary.org/obo/UBERON_2005241) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000550](http://purl.obolibrary.org/obo/CL_0000550) + + +### obsolete posterior cardinal vein `http://purl.obolibrary.org/obo/UBERON_3011081` +#### Removed +- [obsolete posterior cardinal vein](http://purl.obolibrary.org/obo/UBERON_3011081) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0002065" + +#### Added +- [obsolete posterior cardinal vein](http://purl.obolibrary.org/obo/UBERON_3011081) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [posterior cardinal vein](http://purl.obolibrary.org/obo/UBERON_0002065) + + +### obsolete posterior notal wing process `http://purl.obolibrary.org/obo/UBERON_0003177` +#### Removed +- [obsolete posterior notal wing process](http://purl.obolibrary.org/obo/UBERON_0003177) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000758" + +- [obsolete posterior notal wing process](http://purl.obolibrary.org/obo/UBERON_0003177) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004586" + +#### Added +- [obsolete posterior notal wing process](http://purl.obolibrary.org/obo/UBERON_0003177) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000758](http://purl.obolibrary.org/obo/HAO_0000758) + +- [obsolete posterior notal wing process](http://purl.obolibrary.org/obo/UBERON_0003177) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004586](http://purl.obolibrary.org/obo/FBbt_00004586) + + +### obsolete posterior of pes `http://purl.obolibrary.org/obo/UBERON_7500039` +#### Removed +- [obsolete posterior of pes](http://purl.obolibrary.org/obo/UBERON_7500039) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0008338" + +#### Added +- [obsolete posterior of pes](http://purl.obolibrary.org/obo/UBERON_7500039) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [plantar part of pes](http://purl.obolibrary.org/obo/UBERON_0008338) + + +### obsolete posterior tentorial pit `http://purl.obolibrary.org/obo/UBERON_0003160` +#### Removed +- [obsolete posterior tentorial pit](http://purl.obolibrary.org/obo/UBERON_0003160) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000768" + +- [obsolete posterior tentorial pit](http://purl.obolibrary.org/obo/UBERON_0003160) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004503" + +#### Added +- [obsolete posterior tentorial pit](http://purl.obolibrary.org/obo/UBERON_0003160) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000768](http://purl.obolibrary.org/obo/HAO_0000768) + +- [obsolete posterior tentorial pit](http://purl.obolibrary.org/obo/UBERON_0003160) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004503](http://purl.obolibrary.org/obo/FBbt_00004503) + + +### obsolete postganglionic parasympathetic nervous system `http://purl.obolibrary.org/obo/UBERON_0005074` +#### Removed +- [obsolete postganglionic parasympathetic nervous system](http://purl.obolibrary.org/obo/UBERON_0005074) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0011929" + +#### Added +- [obsolete postganglionic parasympathetic nervous system](http://purl.obolibrary.org/obo/UBERON_0005074) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [postganglionic parasympathetic fiber](http://purl.obolibrary.org/obo/UBERON_0011929) + + +### obsolete postgena `http://purl.obolibrary.org/obo/UBERON_0003157` +#### Removed +- [obsolete postgena](http://purl.obolibrary.org/obo/UBERON_0003157) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000776" + +- [obsolete postgena](http://purl.obolibrary.org/obo/UBERON_0003157) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004496" + +#### Added +- [obsolete postgena](http://purl.obolibrary.org/obo/UBERON_0003157) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000776](http://purl.obolibrary.org/obo/HAO_0000776) + +- [obsolete postgena](http://purl.obolibrary.org/obo/UBERON_0003157) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004496](http://purl.obolibrary.org/obo/FBbt_00004496) + + +### obsolete postnotum `http://purl.obolibrary.org/obo/UBERON_0003178` +#### Removed +- [obsolete postnotum](http://purl.obolibrary.org/obo/UBERON_0003178) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000786" + +- [obsolete postnotum](http://purl.obolibrary.org/obo/UBERON_0003178) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004588" + +#### Added +- [obsolete postnotum](http://purl.obolibrary.org/obo/UBERON_0003178) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004588](http://purl.obolibrary.org/obo/FBbt_00004588) + +- [obsolete postnotum](http://purl.obolibrary.org/obo/UBERON_0003178) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000786](http://purl.obolibrary.org/obo/HAO_0000786) + + +### obsolete postocciput `http://purl.obolibrary.org/obo/UBERON_0003156` +#### Removed +- [obsolete postocciput](http://purl.obolibrary.org/obo/UBERON_0003156) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000790" + +- [obsolete postocciput](http://purl.obolibrary.org/obo/UBERON_0003156) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004494" + +#### Added +- [obsolete postocciput](http://purl.obolibrary.org/obo/UBERON_0003156) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000790](http://purl.obolibrary.org/obo/HAO_0000790) + +- [obsolete postocciput](http://purl.obolibrary.org/obo/UBERON_0003156) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004494](http://purl.obolibrary.org/obo/FBbt_00004494) + + +### obsolete postzygapophysis `http://purl.obolibrary.org/obo/UBERON_4300122` +#### Removed +- [obsolete postzygapophysis](http://purl.obolibrary.org/obo/UBERON_4300122) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0001080" + +#### Added +- [obsolete postzygapophysis](http://purl.obolibrary.org/obo/UBERON_4300122) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [postzygapophysis](http://purl.obolibrary.org/obo/UBERON_0001080) + + +### obsolete pre-hepatic part `http://purl.obolibrary.org/obo/UBERON_0006281` +#### Removed +- [obsolete pre-hepatic part](http://purl.obolibrary.org/obo/UBERON_0006281) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EHDAA:8701" + +- [obsolete pre-hepatic part](http://purl.obolibrary.org/obo/UBERON_0006281) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "RETIRED_EHDAA2:0001492" + +- [obsolete pre-hepatic part](http://purl.obolibrary.org/obo/UBERON_0006281) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EMAPA:18422" + +- [obsolete pre-hepatic part](http://purl.obolibrary.org/obo/UBERON_0006281) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:71904" + +#### Added +- [obsolete pre-hepatic part](http://purl.obolibrary.org/obo/UBERON_0006281) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_71904](http://purl.obolibrary.org/obo/FMA_71904) + +- [obsolete pre-hepatic part](http://purl.obolibrary.org/obo/UBERON_0006281) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [RETIRED_EHDAA2_0001492](http://purl.obolibrary.org/obo/RETIRED_EHDAA2_0001492) + +- [obsolete pre-hepatic part](http://purl.obolibrary.org/obo/UBERON_0006281) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EHDAA_8701](http://purl.obolibrary.org/obo/EHDAA_8701) + +- [obsolete pre-hepatic part](http://purl.obolibrary.org/obo/UBERON_0006281) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EMAPA_18422](http://purl.obolibrary.org/obo/EMAPA_18422) + + +### obsolete preameloblast `http://purl.obolibrary.org/obo/UBERON_4000038` +#### Removed +- [obsolete preameloblast](http://purl.obolibrary.org/obo/UBERON_4000038) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0007000" + +#### Added +- [obsolete preameloblast](http://purl.obolibrary.org/obo/UBERON_4000038) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0007000](http://purl.obolibrary.org/obo/CL_0007000) + + +### obsolete precementoblast `http://purl.obolibrary.org/obo/UBERON_4000043` +#### Removed +- [obsolete precementoblast](http://purl.obolibrary.org/obo/UBERON_4000043) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0007002" + +#### Added +- [obsolete precementoblast](http://purl.obolibrary.org/obo/UBERON_4000043) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0007002](http://purl.obolibrary.org/obo/CL_0007002) + + +### obsolete prechondroblast `http://purl.obolibrary.org/obo/UBERON_4000044` +#### Removed +- [obsolete prechondroblast](http://purl.obolibrary.org/obo/UBERON_4000044) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0007009" + +#### Added +- [obsolete prechondroblast](http://purl.obolibrary.org/obo/UBERON_4000044) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0007009](http://purl.obolibrary.org/obo/CL_0007009) + + +### obsolete predominantly Gray regional part of inferior parietal cortex `http://purl.obolibrary.org/obo/UBERON_0026117` +#### Removed +- [obsolete predominantly Gray regional part of inferior parietal cortex](http://purl.obolibrary.org/obo/UBERON_0026117) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1371" + +#### Added +- [obsolete predominantly Gray regional part of inferior parietal cortex](http://purl.obolibrary.org/obo/UBERON_0026117) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1371](http://purl.obolibrary.org/obo/BIRNLEX_1371) + + +### obsolete predominantly gray anterior regional part of thalamus `http://purl.obolibrary.org/obo/UBERON_0026270` +#### Removed +- [obsolete predominantly gray anterior regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0026270) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1524" + +#### Added +- [obsolete predominantly gray anterior regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0026270) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1524](http://purl.obolibrary.org/obo/BIRNLEX_1524) + + +### obsolete predominantly gray dorsal regional part of thalamus `http://purl.obolibrary.org/obo/UBERON_0026040` +#### Removed +- [obsolete predominantly gray dorsal regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0026040) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1293" + +#### Added +- [obsolete predominantly gray dorsal regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0026040) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1293](http://purl.obolibrary.org/obo/BIRNLEX_1293) + + +### obsolete predominantly gray intralaminal regional part of thalamus `http://purl.obolibrary.org/obo/UBERON_0027078` +#### Removed +- [obsolete predominantly gray intralaminal regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0027078) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:962" + +#### Added +- [obsolete predominantly gray intralaminal regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0027078) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_962](http://purl.obolibrary.org/obo/BIRNLEX_962) + + +### obsolete predominantly gray lateral regional part of thalamus `http://purl.obolibrary.org/obo/UBERON_0027103` +#### Removed +- [obsolete predominantly gray lateral regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0027103) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:988" + +#### Added +- [obsolete predominantly gray lateral regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0027103) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_988](http://purl.obolibrary.org/obo/BIRNLEX_988) + + +### obsolete predominantly gray medial regional part of thalamus `http://purl.obolibrary.org/obo/UBERON_0025993` +#### Removed +- [obsolete predominantly gray medial regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0025993) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1246" + +#### Added +- [obsolete predominantly gray medial regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0025993) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1246](http://purl.obolibrary.org/obo/BIRNLEX_1246) + + +### obsolete predominantly gray midline regional part of thalamus `http://purl.obolibrary.org/obo/UBERON_0026982` +#### Removed +- [obsolete predominantly gray midline regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0026982) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:849" + +#### Added +- [obsolete predominantly gray midline regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0026982) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_849](http://purl.obolibrary.org/obo/BIRNLEX_849) + + +### obsolete predominantly gray part of Intralaminar nuclear group `http://purl.obolibrary.org/obo/UBERON_0028615` +#### Removed +- [obsolete predominantly gray part of Intralaminar nuclear group](http://purl.obolibrary.org/obo/UBERON_0028615) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:852" + +#### Added +- [obsolete predominantly gray part of Intralaminar nuclear group](http://purl.obolibrary.org/obo/UBERON_0028615) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_852](http://purl.obolibrary.org/obo/BIRNLEX_852) + + +### obsolete predominantly gray part of basal amygdaloid nucleus `http://purl.obolibrary.org/obo/UBERON_0029960` +#### Removed +- [obsolete predominantly gray part of basal amygdaloid nucleus](http://purl.obolibrary.org/obo/UBERON_0029960) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2694" + +#### Added +- [obsolete predominantly gray part of basal amygdaloid nucleus](http://purl.obolibrary.org/obo/UBERON_0029960) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2694](http://purl.obolibrary.org/obo/BIRNLEX_2694) + + +### obsolete predominantly gray part of basolateral nuclear complex `http://purl.obolibrary.org/obo/UBERON_0028317` +#### Removed +- [obsolete predominantly gray part of basolateral nuclear complex](http://purl.obolibrary.org/obo/UBERON_0028317) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2684" + +#### Added +- [obsolete predominantly gray part of basolateral nuclear complex](http://purl.obolibrary.org/obo/UBERON_0028317) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2684](http://purl.obolibrary.org/obo/BIRNLEX_2684) + + +### obsolete predominantly gray part of corticomedial nuclear complex `http://purl.obolibrary.org/obo/UBERON_0026700` +#### Removed +- [obsolete predominantly gray part of corticomedial nuclear complex](http://purl.obolibrary.org/obo/UBERON_0026700) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2699" + +#### Added +- [obsolete predominantly gray part of corticomedial nuclear complex](http://purl.obolibrary.org/obo/UBERON_0026700) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2699](http://purl.obolibrary.org/obo/BIRNLEX_2699) + + +### obsolete predominantly gray part of medulla oblongata `http://purl.obolibrary.org/obo/UBERON_0023362` +#### Removed +- [obsolete predominantly gray part of medulla oblongata](http://purl.obolibrary.org/obo/UBERON_0023362) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2633" + +#### Added +- [obsolete predominantly gray part of medulla oblongata](http://purl.obolibrary.org/obo/UBERON_0023362) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2633](http://purl.obolibrary.org/obo/BIRNLEX_2633) + + +### obsolete predominantly gray part of posterior nuclear complex `http://purl.obolibrary.org/obo/UBERON_0028544` +#### Removed +- [obsolete predominantly gray part of posterior nuclear complex](http://purl.obolibrary.org/obo/UBERON_0028544) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:772" + +#### Added +- [obsolete predominantly gray part of posterior nuclear complex](http://purl.obolibrary.org/obo/UBERON_0028544) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_772](http://purl.obolibrary.org/obo/BIRNLEX_772) + + +### obsolete predominantly gray part of rostral intralaminar nuclei `http://purl.obolibrary.org/obo/UBERON_0030330` +#### Removed +- [obsolete predominantly gray part of rostral intralaminar nuclei](http://purl.obolibrary.org/obo/UBERON_0030330) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:948" + +#### Added +- [obsolete predominantly gray part of rostral intralaminar nuclei](http://purl.obolibrary.org/obo/UBERON_0030330) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_948](http://purl.obolibrary.org/obo/BIRNLEX_948) + + +### obsolete predominantly gray part of solitary nucleus `http://purl.obolibrary.org/obo/UBERON_0025033` +#### Removed +- [obsolete predominantly gray part of solitary nucleus](http://purl.obolibrary.org/obo/UBERON_0025033) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2660" + +#### Added +- [obsolete predominantly gray part of solitary nucleus](http://purl.obolibrary.org/obo/UBERON_0025033) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2660](http://purl.obolibrary.org/obo/BIRNLEX_2660) + + +### obsolete predominantly gray part of ventral cochlear nucleus `http://purl.obolibrary.org/obo/UBERON_0024962` +#### Removed +- [obsolete predominantly gray part of ventral cochlear nucleus](http://purl.obolibrary.org/obo/UBERON_0024962) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2571" + +#### Added +- [obsolete predominantly gray part of ventral cochlear nucleus](http://purl.obolibrary.org/obo/UBERON_0024962) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2571](http://purl.obolibrary.org/obo/BIRNLEX_2571) + + +### obsolete predominantly gray posterior regional part of thalamus `http://purl.obolibrary.org/obo/UBERON_0026456` +#### Removed +- [obsolete predominantly gray posterior regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0026456) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1712" + +#### Added +- [obsolete predominantly gray posterior regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0026456) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1712](http://purl.obolibrary.org/obo/BIRNLEX_1712) + + +### obsolete predominantly gray regional part of Parahippocampal gyrus `http://purl.obolibrary.org/obo/UBERON_0026032` +#### Removed +- [obsolete predominantly gray regional part of Parahippocampal gyrus](http://purl.obolibrary.org/obo/UBERON_0026032) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1285" + +#### Added +- [obsolete predominantly gray regional part of Parahippocampal gyrus](http://purl.obolibrary.org/obo/UBERON_0026032) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1285](http://purl.obolibrary.org/obo/BIRNLEX_1285) + + +### obsolete predominantly gray regional part of Preoptic area `http://purl.obolibrary.org/obo/UBERON_0026845` +#### Removed +- [obsolete predominantly gray regional part of Preoptic area](http://purl.obolibrary.org/obo/UBERON_0026845) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:700" + +#### Added +- [obsolete predominantly gray regional part of Preoptic area](http://purl.obolibrary.org/obo/UBERON_0026845) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_700](http://purl.obolibrary.org/obo/BIRNLEX_700) + + +### obsolete predominantly gray regional part of adenohypophysis `http://purl.obolibrary.org/obo/UBERON_0025764` +#### Removed +- [obsolete predominantly gray regional part of adenohypophysis](http://purl.obolibrary.org/obo/UBERON_0025764) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1013" + +#### Added +- [obsolete predominantly gray regional part of adenohypophysis](http://purl.obolibrary.org/obo/UBERON_0025764) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1013](http://purl.obolibrary.org/obo/BIRNLEX_1013) + + +### obsolete predominantly gray regional part of amygdala `http://purl.obolibrary.org/obo/UBERON_0028314` +#### Removed +- [obsolete predominantly gray regional part of amygdala](http://purl.obolibrary.org/obo/UBERON_0028314) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2681" + +#### Added +- [obsolete predominantly gray regional part of amygdala](http://purl.obolibrary.org/obo/UBERON_0028314) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2681](http://purl.obolibrary.org/obo/BIRNLEX_2681) + + +### obsolete predominantly gray regional part of anterior hypothalamic region `http://purl.obolibrary.org/obo/UBERON_0024326` +#### Removed +- [obsolete predominantly gray regional part of anterior hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0024326) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1210" + +#### Added +- [obsolete predominantly gray regional part of anterior hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0024326) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1210](http://purl.obolibrary.org/obo/BIRNLEX_1210) + + +### obsolete predominantly gray regional part of anterior nuclear group `http://purl.obolibrary.org/obo/UBERON_0027728` +#### Removed +- [obsolete predominantly gray regional part of anterior nuclear group](http://purl.obolibrary.org/obo/UBERON_0027728) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1350" + +#### Added +- [obsolete predominantly gray regional part of anterior nuclear group](http://purl.obolibrary.org/obo/UBERON_0027728) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1350](http://purl.obolibrary.org/obo/BIRNLEX_1350) + + +### obsolete predominantly gray regional part of basal nuclear complex `http://purl.obolibrary.org/obo/UBERON_0024622` +#### Removed +- [obsolete predominantly gray regional part of basal nuclear complex](http://purl.obolibrary.org/obo/UBERON_0024622) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1507" + +#### Added +- [obsolete predominantly gray regional part of basal nuclear complex](http://purl.obolibrary.org/obo/UBERON_0024622) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1507](http://purl.obolibrary.org/obo/BIRNLEX_1507) + + +### obsolete predominantly gray regional part of basal part of pons `http://purl.obolibrary.org/obo/UBERON_0025928` +#### Removed +- [obsolete predominantly gray regional part of basal part of pons](http://purl.obolibrary.org/obo/UBERON_0025928) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1180" + +#### Added +- [obsolete predominantly gray regional part of basal part of pons](http://purl.obolibrary.org/obo/UBERON_0025928) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1180](http://purl.obolibrary.org/obo/BIRNLEX_1180) + + +### obsolete predominantly gray regional part of cingulate gyrus `http://purl.obolibrary.org/obo/UBERON_0026296` +#### Removed +- [obsolete predominantly gray regional part of cingulate gyrus](http://purl.obolibrary.org/obo/UBERON_0026296) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1550" + +#### Added +- [obsolete predominantly gray regional part of cingulate gyrus](http://purl.obolibrary.org/obo/UBERON_0026296) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1550](http://purl.obolibrary.org/obo/BIRNLEX_1550) + + +### obsolete predominantly gray regional part of dentate gyrus `http://purl.obolibrary.org/obo/UBERON_0027563` +#### Removed +- [obsolete predominantly gray regional part of dentate gyrus](http://purl.obolibrary.org/obo/UBERON_0027563) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1183" + +#### Added +- [obsolete predominantly gray regional part of dentate gyrus](http://purl.obolibrary.org/obo/UBERON_0027563) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1183](http://purl.obolibrary.org/obo/BIRNLEX_1183) + + +### obsolete predominantly gray regional part of dentate nucleus `http://purl.obolibrary.org/obo/UBERON_0027417` +#### Removed +- [obsolete predominantly gray regional part of dentate nucleus](http://purl.obolibrary.org/obo/UBERON_0027417) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1034" + +#### Added +- [obsolete predominantly gray regional part of dentate nucleus](http://purl.obolibrary.org/obo/UBERON_0027417) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1034](http://purl.obolibrary.org/obo/BIRNLEX_1034) + + +### obsolete predominantly gray regional part of epithalamus `http://purl.obolibrary.org/obo/UBERON_0022647` +#### Removed +- [obsolete predominantly gray regional part of epithalamus](http://purl.obolibrary.org/obo/UBERON_0022647) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1174" + +#### Added +- [obsolete predominantly gray regional part of epithalamus](http://purl.obolibrary.org/obo/UBERON_0022647) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1174](http://purl.obolibrary.org/obo/BIRNLEX_1174) + + +### obsolete predominantly gray regional part of frontal lobe `http://purl.obolibrary.org/obo/UBERON_0024212` +#### Removed +- [obsolete predominantly gray regional part of frontal lobe](http://purl.obolibrary.org/obo/UBERON_0024212) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1093" + +- [obsolete predominantly gray regional part of frontal lobe](http://purl.obolibrary.org/obo/UBERON_0024212) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0001870" + +#### Added +- [obsolete predominantly gray regional part of frontal lobe](http://purl.obolibrary.org/obo/UBERON_0024212) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1093](http://purl.obolibrary.org/obo/BIRNLEX_1093) + +- [obsolete predominantly gray regional part of frontal lobe](http://purl.obolibrary.org/obo/UBERON_0024212) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [frontal cortex](http://purl.obolibrary.org/obo/UBERON_0001870) + + +### obsolete predominantly gray regional part of globus pallidus `http://purl.obolibrary.org/obo/UBERON_0031196` +#### Removed +- [obsolete predominantly gray regional part of globus pallidus](http://purl.obolibrary.org/obo/UBERON_0031196) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1545" + +#### Added +- [obsolete predominantly gray regional part of globus pallidus](http://purl.obolibrary.org/obo/UBERON_0031196) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1545](http://purl.obolibrary.org/obo/BIRNLEX_1545) + + +### obsolete predominantly gray regional part of habenula `http://purl.obolibrary.org/obo/UBERON_0024559` +#### Removed +- [obsolete predominantly gray regional part of habenula](http://purl.obolibrary.org/obo/UBERON_0024559) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1443" + +#### Added +- [obsolete predominantly gray regional part of habenula](http://purl.obolibrary.org/obo/UBERON_0024559) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1443](http://purl.obolibrary.org/obo/BIRNLEX_1443) + + +### obsolete predominantly gray regional part of hippocampal formation `http://purl.obolibrary.org/obo/UBERON_0027828` +#### Removed +- [obsolete predominantly gray regional part of hippocampal formation](http://purl.obolibrary.org/obo/UBERON_0027828) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1449" + +#### Added +- [obsolete predominantly gray regional part of hippocampal formation](http://purl.obolibrary.org/obo/UBERON_0027828) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1449](http://purl.obolibrary.org/obo/BIRNLEX_1449) + + +### obsolete predominantly gray regional part of hypothalamus `http://purl.obolibrary.org/obo/UBERON_0023127` +#### Removed +- [obsolete predominantly gray regional part of hypothalamus](http://purl.obolibrary.org/obo/UBERON_0023127) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1656" + +#### Added +- [obsolete predominantly gray regional part of hypothalamus](http://purl.obolibrary.org/obo/UBERON_0023127) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1656](http://purl.obolibrary.org/obo/BIRNLEX_1656) + + +### obsolete predominantly gray regional part of inferior colliculus `http://purl.obolibrary.org/obo/UBERON_0023587` +#### Removed +- [obsolete predominantly gray regional part of inferior colliculus](http://purl.obolibrary.org/obo/UBERON_0023587) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:718" + +#### Added +- [obsolete predominantly gray regional part of inferior colliculus](http://purl.obolibrary.org/obo/UBERON_0023587) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_718](http://purl.obolibrary.org/obo/BIRNLEX_718) + + +### obsolete predominantly gray regional part of inferior frontal gyrus `http://purl.obolibrary.org/obo/UBERON_0026966` +#### Removed +- [obsolete predominantly gray regional part of inferior frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0026966) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:829" + +#### Added +- [obsolete predominantly gray regional part of inferior frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0026966) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_829](http://purl.obolibrary.org/obo/BIRNLEX_829) + + +### obsolete predominantly gray regional part of intermediate hypothalamic region `http://purl.obolibrary.org/obo/UBERON_0023102` +#### Removed +- [obsolete predominantly gray regional part of intermediate hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0023102) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1630" + +#### Added +- [obsolete predominantly gray regional part of intermediate hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0023102) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1630](http://purl.obolibrary.org/obo/BIRNLEX_1630) + + +### obsolete predominantly gray regional part of lateral geniculate body `http://purl.obolibrary.org/obo/UBERON_0029594` +#### Removed +- [obsolete predominantly gray regional part of lateral geniculate body](http://purl.obolibrary.org/obo/UBERON_0029594) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1583" + +#### Added +- [obsolete predominantly gray regional part of lateral geniculate body](http://purl.obolibrary.org/obo/UBERON_0029594) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1583](http://purl.obolibrary.org/obo/BIRNLEX_1583) + + +### obsolete predominantly gray regional part of lateral hypothalamic region `http://purl.obolibrary.org/obo/UBERON_0022665` +#### Removed +- [obsolete predominantly gray regional part of lateral hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0022665) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1193" + +#### Added +- [obsolete predominantly gray regional part of lateral hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0022665) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1193](http://purl.obolibrary.org/obo/BIRNLEX_1193) + + +### obsolete predominantly gray regional part of lateral nuclear group `http://purl.obolibrary.org/obo/UBERON_0028744` +#### Removed +- [obsolete predominantly gray regional part of lateral nuclear group](http://purl.obolibrary.org/obo/UBERON_0028744) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:997" + +#### Added +- [obsolete predominantly gray regional part of lateral nuclear group](http://purl.obolibrary.org/obo/UBERON_0028744) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_997](http://purl.obolibrary.org/obo/BIRNLEX_997) + + +### obsolete predominantly gray regional part of limbic lobe `http://purl.obolibrary.org/obo/UBERON_0025337` +#### Removed +- [obsolete predominantly gray regional part of limbic lobe](http://purl.obolibrary.org/obo/UBERON_0025337) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0016542" + +- [obsolete predominantly gray regional part of limbic lobe](http://purl.obolibrary.org/obo/UBERON_0025337) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:831" + +#### Added +- [obsolete predominantly gray regional part of limbic lobe](http://purl.obolibrary.org/obo/UBERON_0025337) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_831](http://purl.obolibrary.org/obo/BIRNLEX_831) + +- [obsolete predominantly gray regional part of limbic lobe](http://purl.obolibrary.org/obo/UBERON_0025337) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [limbic cortex](http://purl.obolibrary.org/obo/UBERON_0016542) + + +### obsolete predominantly gray regional part of medial dorsal nucleus `http://purl.obolibrary.org/obo/UBERON_0027631` +#### Removed +- [obsolete predominantly gray regional part of medial dorsal nucleus](http://purl.obolibrary.org/obo/UBERON_0027631) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1252" + +#### Added +- [obsolete predominantly gray regional part of medial dorsal nucleus](http://purl.obolibrary.org/obo/UBERON_0027631) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1252](http://purl.obolibrary.org/obo/BIRNLEX_1252) + + +### obsolete predominantly gray regional part of medial geniculate body `http://purl.obolibrary.org/obo/UBERON_0029603` +#### Removed +- [obsolete predominantly gray regional part of medial geniculate body](http://purl.obolibrary.org/obo/UBERON_0029603) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1592" + +#### Added +- [obsolete predominantly gray regional part of medial geniculate body](http://purl.obolibrary.org/obo/UBERON_0029603) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1592](http://purl.obolibrary.org/obo/BIRNLEX_1592) + + +### obsolete predominantly gray regional part of medial mammillary nucleus `http://purl.obolibrary.org/obo/UBERON_0024437` +#### Removed +- [obsolete predominantly gray regional part of medial mammillary nucleus](http://purl.obolibrary.org/obo/UBERON_0024437) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1322" + +#### Added +- [obsolete predominantly gray regional part of medial mammillary nucleus](http://purl.obolibrary.org/obo/UBERON_0024437) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1322](http://purl.obolibrary.org/obo/BIRNLEX_1322) + + +### obsolete predominantly gray regional part of median eminence `http://purl.obolibrary.org/obo/UBERON_0027651` +#### Removed +- [obsolete predominantly gray regional part of median eminence](http://purl.obolibrary.org/obo/UBERON_0027651) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1272" + +#### Added +- [obsolete predominantly gray regional part of median eminence](http://purl.obolibrary.org/obo/UBERON_0027651) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1272](http://purl.obolibrary.org/obo/BIRNLEX_1272) + + +### obsolete predominantly gray regional part of medullary raphe nuclear complex `http://purl.obolibrary.org/obo/UBERON_0022828` +#### Removed +- [obsolete predominantly gray regional part of medullary raphe nuclear complex](http://purl.obolibrary.org/obo/UBERON_0022828) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1357" + +#### Added +- [obsolete predominantly gray regional part of medullary raphe nuclear complex](http://purl.obolibrary.org/obo/UBERON_0022828) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1357](http://purl.obolibrary.org/obo/BIRNLEX_1357) + + +### obsolete predominantly gray regional part of metathalamus `http://purl.obolibrary.org/obo/UBERON_0027665` +#### Removed +- [obsolete predominantly gray regional part of metathalamus](http://purl.obolibrary.org/obo/UBERON_0027665) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1286" + +#### Added +- [obsolete predominantly gray regional part of metathalamus](http://purl.obolibrary.org/obo/UBERON_0027665) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1286](http://purl.obolibrary.org/obo/BIRNLEX_1286) + + +### obsolete predominantly gray regional part of midbrain reticular formation `http://purl.obolibrary.org/obo/UBERON_0024524` +#### Removed +- [obsolete predominantly gray regional part of midbrain reticular formation](http://purl.obolibrary.org/obo/UBERON_0024524) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1408" + +#### Added +- [obsolete predominantly gray regional part of midbrain reticular formation](http://purl.obolibrary.org/obo/UBERON_0024524) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1408](http://purl.obolibrary.org/obo/BIRNLEX_1408) + + +### obsolete predominantly gray regional part of midbrain tegmentum `http://purl.obolibrary.org/obo/UBERON_0022937` +#### Removed +- [obsolete predominantly gray regional part of midbrain tegmentum](http://purl.obolibrary.org/obo/UBERON_0022937) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1465" + +#### Added +- [obsolete predominantly gray regional part of midbrain tegmentum](http://purl.obolibrary.org/obo/UBERON_0022937) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1465](http://purl.obolibrary.org/obo/BIRNLEX_1465) + + +### obsolete predominantly gray regional part of midline nuclear group `http://purl.obolibrary.org/obo/UBERON_0028616` +#### Removed +- [obsolete predominantly gray regional part of midline nuclear group](http://purl.obolibrary.org/obo/UBERON_0028616) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:854" + +#### Added +- [obsolete predominantly gray regional part of midline nuclear group](http://purl.obolibrary.org/obo/UBERON_0028616) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_854](http://purl.obolibrary.org/obo/BIRNLEX_854) + + +### obsolete predominantly gray regional part of neostriatum `http://purl.obolibrary.org/obo/UBERON_0027600` +#### Removed +- [obsolete predominantly gray regional part of neostriatum](http://purl.obolibrary.org/obo/UBERON_0027600) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1221" + +#### Added +- [obsolete predominantly gray regional part of neostriatum](http://purl.obolibrary.org/obo/UBERON_0027600) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1221](http://purl.obolibrary.org/obo/BIRNLEX_1221) + + +### obsolete predominantly gray regional part of neurohypophysis `http://purl.obolibrary.org/obo/UBERON_0027052` +#### Removed +- [obsolete predominantly gray regional part of neurohypophysis](http://purl.obolibrary.org/obo/UBERON_0027052) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:933" + +#### Added +- [obsolete predominantly gray regional part of neurohypophysis](http://purl.obolibrary.org/obo/UBERON_0027052) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_933](http://purl.obolibrary.org/obo/BIRNLEX_933) + + +### obsolete predominantly gray regional part of occipital lobe `http://purl.obolibrary.org/obo/UBERON_0024501` +#### Removed +- [obsolete predominantly gray regional part of occipital lobe](http://purl.obolibrary.org/obo/UBERON_0024501) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1386" + +- [obsolete predominantly gray regional part of occipital lobe](http://purl.obolibrary.org/obo/UBERON_0024501) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0016540" + +#### Added +- [obsolete predominantly gray regional part of occipital lobe](http://purl.obolibrary.org/obo/UBERON_0024501) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1386](http://purl.obolibrary.org/obo/BIRNLEX_1386) + +- [obsolete predominantly gray regional part of occipital lobe](http://purl.obolibrary.org/obo/UBERON_0024501) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [occipital cortex](http://purl.obolibrary.org/obo/UBERON_0016540) + + +### obsolete predominantly gray regional part of oculomotor nuclear complex `http://purl.obolibrary.org/obo/UBERON_0024528` +#### Removed +- [obsolete predominantly gray regional part of oculomotor nuclear complex](http://purl.obolibrary.org/obo/UBERON_0024528) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1412" + +#### Added +- [obsolete predominantly gray regional part of oculomotor nuclear complex](http://purl.obolibrary.org/obo/UBERON_0024528) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1412](http://purl.obolibrary.org/obo/BIRNLEX_1412) + + +### obsolete predominantly gray regional part of orbital gyri complex `http://purl.obolibrary.org/obo/UBERON_0025983` +#### Removed +- [obsolete predominantly gray regional part of orbital gyri complex](http://purl.obolibrary.org/obo/UBERON_0025983) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1236" + +#### Added +- [obsolete predominantly gray regional part of orbital gyri complex](http://purl.obolibrary.org/obo/UBERON_0025983) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1236](http://purl.obolibrary.org/obo/BIRNLEX_1236) + + +### obsolete predominantly gray regional part of parietal lobe `http://purl.obolibrary.org/obo/UBERON_0024314` +#### Removed +- [obsolete predominantly gray regional part of parietal lobe](http://purl.obolibrary.org/obo/UBERON_0024314) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0016530" + +- [obsolete predominantly gray regional part of parietal lobe](http://purl.obolibrary.org/obo/UBERON_0024314) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1198" + +#### Added +- [obsolete predominantly gray regional part of parietal lobe](http://purl.obolibrary.org/obo/UBERON_0024314) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [parietal cortex](http://purl.obolibrary.org/obo/UBERON_0016530) + +- [obsolete predominantly gray regional part of parietal lobe](http://purl.obolibrary.org/obo/UBERON_0024314) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1198](http://purl.obolibrary.org/obo/BIRNLEX_1198) + + +### obsolete predominantly gray regional part of pontine reticular formation `http://purl.obolibrary.org/obo/UBERON_0027453` +#### Removed +- [obsolete predominantly gray regional part of pontine reticular formation](http://purl.obolibrary.org/obo/UBERON_0027453) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1071" + +#### Added +- [obsolete predominantly gray regional part of pontine reticular formation](http://purl.obolibrary.org/obo/UBERON_0027453) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1071](http://purl.obolibrary.org/obo/BIRNLEX_1071) + + +### obsolete predominantly gray regional part of pontine tegmentum `http://purl.obolibrary.org/obo/UBERON_0025811` +#### Removed +- [obsolete predominantly gray regional part of pontine tegmentum](http://purl.obolibrary.org/obo/UBERON_0025811) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1061" + +#### Added +- [obsolete predominantly gray regional part of pontine tegmentum](http://purl.obolibrary.org/obo/UBERON_0025811) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1061](http://purl.obolibrary.org/obo/BIRNLEX_1061) + + +### obsolete predominantly gray regional part of posterior hypothalamic region `http://purl.obolibrary.org/obo/UBERON_0022701` +#### Removed +- [obsolete predominantly gray regional part of posterior hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0022701) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1229" + +#### Added +- [obsolete predominantly gray regional part of posterior hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0022701) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1229](http://purl.obolibrary.org/obo/BIRNLEX_1229) + + +### obsolete predominantly gray regional part of pretectal region `http://purl.obolibrary.org/obo/UBERON_0022480` +#### Removed +- [obsolete predominantly gray regional part of pretectal region](http://purl.obolibrary.org/obo/UBERON_0022480) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1003" + +#### Added +- [obsolete predominantly gray regional part of pretectal region](http://purl.obolibrary.org/obo/UBERON_0022480) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1003](http://purl.obolibrary.org/obo/BIRNLEX_1003) + + +### obsolete predominantly gray regional part of pulvinar `http://purl.obolibrary.org/obo/UBERON_0030242` +#### Removed +- [obsolete predominantly gray regional part of pulvinar](http://purl.obolibrary.org/obo/UBERON_0030242) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:841" + +#### Added +- [obsolete predominantly gray regional part of pulvinar](http://purl.obolibrary.org/obo/UBERON_0030242) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_841](http://purl.obolibrary.org/obo/BIRNLEX_841) + + +### obsolete predominantly gray regional part of red nucleus `http://purl.obolibrary.org/obo/UBERON_0024541` +#### Removed +- [obsolete predominantly gray regional part of red nucleus](http://purl.obolibrary.org/obo/UBERON_0024541) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1425" + +#### Added +- [obsolete predominantly gray regional part of red nucleus](http://purl.obolibrary.org/obo/UBERON_0024541) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1425](http://purl.obolibrary.org/obo/BIRNLEX_1425) + + +### obsolete predominantly gray regional part of septal nuclear complex `http://purl.obolibrary.org/obo/UBERON_0025338` +#### Removed +- [obsolete predominantly gray regional part of septal nuclear complex](http://purl.obolibrary.org/obo/UBERON_0025338) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:832" + +#### Added +- [obsolete predominantly gray regional part of septal nuclear complex](http://purl.obolibrary.org/obo/UBERON_0025338) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_832](http://purl.obolibrary.org/obo/BIRNLEX_832) + + +### obsolete predominantly gray regional part of substantia nigra `http://purl.obolibrary.org/obo/UBERON_0026921` +#### Removed +- [obsolete predominantly gray regional part of substantia nigra](http://purl.obolibrary.org/obo/UBERON_0026921) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:782" + +#### Added +- [obsolete predominantly gray regional part of substantia nigra](http://purl.obolibrary.org/obo/UBERON_0026921) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_782](http://purl.obolibrary.org/obo/BIRNLEX_782) + + +### obsolete predominantly gray regional part of superior olivary complex `http://purl.obolibrary.org/obo/UBERON_0027748` +#### Removed +- [obsolete predominantly gray regional part of superior olivary complex](http://purl.obolibrary.org/obo/UBERON_0027748) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1370" + +#### Added +- [obsolete predominantly gray regional part of superior olivary complex](http://purl.obolibrary.org/obo/UBERON_0027748) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1370](http://purl.obolibrary.org/obo/BIRNLEX_1370) + + +### obsolete predominantly gray regional part of superior olive `http://purl.obolibrary.org/obo/UBERON_0029396` +#### Removed +- [obsolete predominantly gray regional part of superior olive](http://purl.obolibrary.org/obo/UBERON_0029396) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1385" + +#### Added +- [obsolete predominantly gray regional part of superior olive](http://purl.obolibrary.org/obo/UBERON_0029396) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1385](http://purl.obolibrary.org/obo/BIRNLEX_1385) + + +### obsolete predominantly gray regional part of tectum `http://purl.obolibrary.org/obo/UBERON_0023677` +#### Removed +- [obsolete predominantly gray regional part of tectum](http://purl.obolibrary.org/obo/UBERON_0023677) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:815" + +#### Added +- [obsolete predominantly gray regional part of tectum](http://purl.obolibrary.org/obo/UBERON_0023677) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_815](http://purl.obolibrary.org/obo/BIRNLEX_815) + + +### obsolete predominantly gray regional part of temporal lobe `http://purl.obolibrary.org/obo/UBERON_0024749` +#### Removed +- [obsolete predominantly gray regional part of temporal lobe](http://purl.obolibrary.org/obo/UBERON_0024749) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0016538" + +- [obsolete predominantly gray regional part of temporal lobe](http://purl.obolibrary.org/obo/UBERON_0024749) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1633" + +#### Added +- [obsolete predominantly gray regional part of temporal lobe](http://purl.obolibrary.org/obo/UBERON_0024749) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1633](http://purl.obolibrary.org/obo/BIRNLEX_1633) + +- [obsolete predominantly gray regional part of temporal lobe](http://purl.obolibrary.org/obo/UBERON_0024749) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [temporal cortex](http://purl.obolibrary.org/obo/UBERON_0016538) + + +### obsolete predominantly gray regional part of thalamus `http://purl.obolibrary.org/obo/UBERON_0024793` +#### Removed +- [obsolete predominantly gray regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0024793) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1679" + +#### Added +- [obsolete predominantly gray regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0024793) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1679](http://purl.obolibrary.org/obo/BIRNLEX_1679) + + +### obsolete predominantly gray regional part of transverse frontopolar gyri complex `http://purl.obolibrary.org/obo/UBERON_0026020` +#### Removed +- [obsolete predominantly gray regional part of transverse frontopolar gyri complex](http://purl.obolibrary.org/obo/UBERON_0026020) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1273" + +#### Added +- [obsolete predominantly gray regional part of transverse frontopolar gyri complex](http://purl.obolibrary.org/obo/UBERON_0026020) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1273](http://purl.obolibrary.org/obo/BIRNLEX_1273) + + +### obsolete predominantly gray regional part of ventral anterior nucleus `http://purl.obolibrary.org/obo/UBERON_0030119` +#### Removed +- [obsolete predominantly gray regional part of ventral anterior nucleus](http://purl.obolibrary.org/obo/UBERON_0030119) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:709" + +#### Added +- [obsolete predominantly gray regional part of ventral anterior nucleus](http://purl.obolibrary.org/obo/UBERON_0030119) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_709](http://purl.obolibrary.org/obo/BIRNLEX_709) + + +### obsolete predominantly gray regional part of ventral lateral nucleus `http://purl.obolibrary.org/obo/UBERON_0029140` +#### Removed +- [obsolete predominantly gray regional part of ventral lateral nucleus](http://purl.obolibrary.org/obo/UBERON_0029140) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1124" + +#### Added +- [obsolete predominantly gray regional part of ventral lateral nucleus](http://purl.obolibrary.org/obo/UBERON_0029140) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1124](http://purl.obolibrary.org/obo/BIRNLEX_1124) + + +### obsolete predominantly gray regional part of ventral nuclear group `http://purl.obolibrary.org/obo/UBERON_0027604` +#### Removed +- [obsolete predominantly gray regional part of ventral nuclear group](http://purl.obolibrary.org/obo/UBERON_0027604) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1225" + +#### Added +- [obsolete predominantly gray regional part of ventral nuclear group](http://purl.obolibrary.org/obo/UBERON_0027604) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1225](http://purl.obolibrary.org/obo/BIRNLEX_1225) + + +### obsolete predominantly gray regional part of ventral posterior nucleus `http://purl.obolibrary.org/obo/UBERON_0029681` +#### Removed +- [obsolete predominantly gray regional part of ventral posterior nucleus](http://purl.obolibrary.org/obo/UBERON_0029681) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1671" + +#### Added +- [obsolete predominantly gray regional part of ventral posterior nucleus](http://purl.obolibrary.org/obo/UBERON_0029681) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1671](http://purl.obolibrary.org/obo/BIRNLEX_1671) + + +### obsolete predominantly gray regional part of ventral posterolateral nucleus `http://purl.obolibrary.org/obo/UBERON_0031314` +#### Removed +- [obsolete predominantly gray regional part of ventral posterolateral nucleus](http://purl.obolibrary.org/obo/UBERON_0031314) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1664" + +#### Added +- [obsolete predominantly gray regional part of ventral posterolateral nucleus](http://purl.obolibrary.org/obo/UBERON_0031314) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1664](http://purl.obolibrary.org/obo/BIRNLEX_1664) + + +### obsolete predominantly gray regional part of ventral posteromedial nucleus `http://purl.obolibrary.org/obo/UBERON_0031948` +#### Removed +- [obsolete predominantly gray regional part of ventral posteromedial nucleus](http://purl.obolibrary.org/obo/UBERON_0031948) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:924" + +#### Added +- [obsolete predominantly gray regional part of ventral posteromedial nucleus](http://purl.obolibrary.org/obo/UBERON_0031948) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_924](http://purl.obolibrary.org/obo/BIRNLEX_924) + + +### obsolete predominantly gray ventral regional part of thalamus `http://purl.obolibrary.org/obo/UBERON_0026445` +#### Removed +- [obsolete predominantly gray ventral regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0026445) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1701" + +#### Added +- [obsolete predominantly gray ventral regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0026445) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1701](http://purl.obolibrary.org/obo/BIRNLEX_1701) + + +### obsolete predominantly white dorsal regional part of medial geniculate body `http://purl.obolibrary.org/obo/UBERON_0029215` +#### Removed +- [obsolete predominantly white dorsal regional part of medial geniculate body](http://purl.obolibrary.org/obo/UBERON_0029215) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1203" + +#### Added +- [obsolete predominantly white dorsal regional part of medial geniculate body](http://purl.obolibrary.org/obo/UBERON_0029215) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1203](http://purl.obolibrary.org/obo/BIRNLEX_1203) + + +### obsolete predominantly white dorsal regional part of metathalamus `http://purl.obolibrary.org/obo/UBERON_0027687` +#### Removed +- [obsolete predominantly white dorsal regional part of metathalamus](http://purl.obolibrary.org/obo/UBERON_0027687) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1308" + +#### Added +- [obsolete predominantly white dorsal regional part of metathalamus](http://purl.obolibrary.org/obo/UBERON_0027687) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1308](http://purl.obolibrary.org/obo/BIRNLEX_1308) + + +### obsolete predominantly white dorsal regional part of thalamus `http://purl.obolibrary.org/obo/UBERON_0026048` +#### Removed +- [obsolete predominantly white dorsal regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0026048) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1301" + +#### Added +- [obsolete predominantly white dorsal regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0026048) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1301](http://purl.obolibrary.org/obo/BIRNLEX_1301) + + +### obsolete predominantly white regional part of anterior commissure `http://purl.obolibrary.org/obo/UBERON_0026975` +#### Removed +- [obsolete predominantly white regional part of anterior commissure](http://purl.obolibrary.org/obo/UBERON_0026975) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:839" + +#### Added +- [obsolete predominantly white regional part of anterior commissure](http://purl.obolibrary.org/obo/UBERON_0026975) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_839](http://purl.obolibrary.org/obo/BIRNLEX_839) + + +### obsolete predominantly white regional part of anterior hypothalamic region `http://purl.obolibrary.org/obo/UBERON_0024335` +#### Removed +- [obsolete predominantly white regional part of anterior hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0024335) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1219" + +#### Added +- [obsolete predominantly white regional part of anterior hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0024335) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1219](http://purl.obolibrary.org/obo/BIRNLEX_1219) + + +### obsolete predominantly white regional part of basal part of pons `http://purl.obolibrary.org/obo/UBERON_0025778` +#### Removed +- [obsolete predominantly white regional part of basal part of pons](http://purl.obolibrary.org/obo/UBERON_0025778) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1027" + +#### Added +- [obsolete predominantly white regional part of basal part of pons](http://purl.obolibrary.org/obo/UBERON_0025778) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1027](http://purl.obolibrary.org/obo/BIRNLEX_1027) + + +### obsolete predominantly white regional part of cerebellar cortex `http://purl.obolibrary.org/obo/UBERON_0024211` +#### Removed +- [obsolete predominantly white regional part of cerebellar cortex](http://purl.obolibrary.org/obo/UBERON_0024211) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1092" + +#### Added +- [obsolete predominantly white regional part of cerebellar cortex](http://purl.obolibrary.org/obo/UBERON_0024211) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1092](http://purl.obolibrary.org/obo/BIRNLEX_1092) + + +### obsolete predominantly white regional part of cerebral peduncle `http://purl.obolibrary.org/obo/UBERON_0024329` +#### Removed +- [obsolete predominantly white regional part of cerebral peduncle](http://purl.obolibrary.org/obo/UBERON_0024329) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1213" + +#### Added +- [obsolete predominantly white regional part of cerebral peduncle](http://purl.obolibrary.org/obo/UBERON_0024329) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1213](http://purl.obolibrary.org/obo/BIRNLEX_1213) + + +### obsolete predominantly white regional part of epithalamus `http://purl.obolibrary.org/obo/UBERON_0023092` +#### Removed +- [obsolete predominantly white regional part of epithalamus](http://purl.obolibrary.org/obo/UBERON_0023092) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1620" + +#### Added +- [obsolete predominantly white regional part of epithalamus](http://purl.obolibrary.org/obo/UBERON_0023092) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1620](http://purl.obolibrary.org/obo/BIRNLEX_1620) + + +### obsolete predominantly white regional part of fornix `http://purl.obolibrary.org/obo/UBERON_0025250` +#### Removed +- [obsolete predominantly white regional part of fornix](http://purl.obolibrary.org/obo/UBERON_0025250) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:738" + +#### Added +- [obsolete predominantly white regional part of fornix](http://purl.obolibrary.org/obo/UBERON_0025250) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_738](http://purl.obolibrary.org/obo/BIRNLEX_738) + + +### obsolete predominantly white regional part of globus pallidus `http://purl.obolibrary.org/obo/UBERON_0029629` +#### Removed +- [obsolete predominantly white regional part of globus pallidus](http://purl.obolibrary.org/obo/UBERON_0029629) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1617" + +#### Added +- [obsolete predominantly white regional part of globus pallidus](http://purl.obolibrary.org/obo/UBERON_0029629) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1617](http://purl.obolibrary.org/obo/BIRNLEX_1617) + + +### obsolete predominantly white regional part of hippocampal formation `http://purl.obolibrary.org/obo/UBERON_0025899` +#### Removed +- [obsolete predominantly white regional part of hippocampal formation](http://purl.obolibrary.org/obo/UBERON_0025899) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1149" + +#### Added +- [obsolete predominantly white regional part of hippocampal formation](http://purl.obolibrary.org/obo/UBERON_0025899) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1149](http://purl.obolibrary.org/obo/BIRNLEX_1149) + + +### obsolete predominantly white regional part of hypothalamus `http://purl.obolibrary.org/obo/UBERON_0023649` +#### Removed +- [obsolete predominantly white regional part of hypothalamus](http://purl.obolibrary.org/obo/UBERON_0023649) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:785" + +#### Added +- [obsolete predominantly white regional part of hypothalamus](http://purl.obolibrary.org/obo/UBERON_0023649) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_785](http://purl.obolibrary.org/obo/BIRNLEX_785) + + +### obsolete predominantly white regional part of inferior colliculus `http://purl.obolibrary.org/obo/UBERON_0023825` +#### Removed +- [obsolete predominantly white regional part of inferior colliculus](http://purl.obolibrary.org/obo/UBERON_0023825) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:985" + +#### Added +- [obsolete predominantly white regional part of inferior colliculus](http://purl.obolibrary.org/obo/UBERON_0023825) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_985](http://purl.obolibrary.org/obo/BIRNLEX_985) + + +### obsolete predominantly white regional part of midbrain tegmentum `http://purl.obolibrary.org/obo/UBERON_0022944` +#### Removed +- [obsolete predominantly white regional part of midbrain tegmentum](http://purl.obolibrary.org/obo/UBERON_0022944) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1472" + +#### Added +- [obsolete predominantly white regional part of midbrain tegmentum](http://purl.obolibrary.org/obo/UBERON_0022944) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1472](http://purl.obolibrary.org/obo/BIRNLEX_1472) + + +### obsolete predominantly white regional part of posterior hypothalamic region `http://purl.obolibrary.org/obo/UBERON_0023007` +#### Removed +- [obsolete predominantly white regional part of posterior hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0023007) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1536" + +#### Added +- [obsolete predominantly white regional part of posterior hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0023007) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1536](http://purl.obolibrary.org/obo/BIRNLEX_1536) + + +### obsolete predominantly white regional part of red nucleus `http://purl.obolibrary.org/obo/UBERON_0024550` +#### Removed +- [obsolete predominantly white regional part of red nucleus](http://purl.obolibrary.org/obo/UBERON_0024550) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1434" + +#### Added +- [obsolete predominantly white regional part of red nucleus](http://purl.obolibrary.org/obo/UBERON_0024550) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1434](http://purl.obolibrary.org/obo/BIRNLEX_1434) + + +### obsolete predominantly white regional part of septum pellucidum `http://purl.obolibrary.org/obo/UBERON_0023020` +#### Removed +- [obsolete predominantly white regional part of septum pellucidum](http://purl.obolibrary.org/obo/UBERON_0023020) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1549" + +#### Added +- [obsolete predominantly white regional part of septum pellucidum](http://purl.obolibrary.org/obo/UBERON_0023020) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1549](http://purl.obolibrary.org/obo/BIRNLEX_1549) + + +### obsolete predominantly white regional part of superior olivary complex `http://purl.obolibrary.org/obo/UBERON_0027755` +#### Removed +- [obsolete predominantly white regional part of superior olivary complex](http://purl.obolibrary.org/obo/UBERON_0027755) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1377" + +#### Added +- [obsolete predominantly white regional part of superior olivary complex](http://purl.obolibrary.org/obo/UBERON_0027755) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1377](http://purl.obolibrary.org/obo/BIRNLEX_1377) + + +### obsolete predominantly white regional part of tectum `http://purl.obolibrary.org/obo/UBERON_0023670` +#### Removed +- [obsolete predominantly white regional part of tectum](http://purl.obolibrary.org/obo/UBERON_0023670) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:808" + +#### Added +- [obsolete predominantly white regional part of tectum](http://purl.obolibrary.org/obo/UBERON_0023670) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_808](http://purl.obolibrary.org/obo/BIRNLEX_808) + + +### obsolete predominantly white regional part of thalamus `http://purl.obolibrary.org/obo/UBERON_0024800` +#### Removed +- [obsolete predominantly white regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0024800) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1686" + +#### Added +- [obsolete predominantly white regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0024800) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1686](http://purl.obolibrary.org/obo/BIRNLEX_1686) + + +### obsolete preganglionic parasympathetic nervous system `http://purl.obolibrary.org/obo/UBERON_0005073` +#### Removed +- [obsolete preganglionic parasympathetic nervous system](http://purl.obolibrary.org/obo/UBERON_0005073) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0011930" + +#### Added +- [obsolete preganglionic parasympathetic nervous system](http://purl.obolibrary.org/obo/UBERON_0005073) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [preganglionic parasympathetic fiber](http://purl.obolibrary.org/obo/UBERON_0011930) + + +### obsolete premaxillary tooth `http://purl.obolibrary.org/obo/UBERON_3000464` +#### Removed +- [obsolete premaxillary tooth](http://purl.obolibrary.org/obo/UBERON_3000464) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:2001626" + +#### Added +- [obsolete premaxillary tooth](http://purl.obolibrary.org/obo/UBERON_3000464) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [premaxillary tooth](http://purl.obolibrary.org/obo/UBERON_2001626) + + +### obsolete prementum `http://purl.obolibrary.org/obo/UBERON_0003166` +#### Removed +- [obsolete prementum](http://purl.obolibrary.org/obo/UBERON_0003166) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004534" + +- [obsolete prementum](http://purl.obolibrary.org/obo/UBERON_0003166) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000804" + +#### Added +- [obsolete prementum](http://purl.obolibrary.org/obo/UBERON_0003166) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004534](http://purl.obolibrary.org/obo/FBbt_00004534) + +- [obsolete prementum](http://purl.obolibrary.org/obo/UBERON_0003166) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000804](http://purl.obolibrary.org/obo/HAO_0000804) + + +### obsolete preodontoblast `http://purl.obolibrary.org/obo/UBERON_4000041` +#### Removed +- [obsolete preodontoblast](http://purl.obolibrary.org/obo/UBERON_4000041) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0007003" + +#### Added +- [obsolete preodontoblast](http://purl.obolibrary.org/obo/UBERON_4000041) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0007003](http://purl.obolibrary.org/obo/CL_0007003) + + +### obsolete preosteoblast `http://purl.obolibrary.org/obo/UBERON_4000045` +#### Removed +- [obsolete preosteoblast](http://purl.obolibrary.org/obo/UBERON_4000045) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0007010" + +#### Added +- [obsolete preosteoblast](http://purl.obolibrary.org/obo/UBERON_4000045) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0007010](http://purl.obolibrary.org/obo/CL_0007010) + + +### obsolete prescutum `http://purl.obolibrary.org/obo/UBERON_0003175` +#### Removed +- [obsolete prescutum](http://purl.obolibrary.org/obo/UBERON_0003175) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004582" + +- [obsolete prescutum](http://purl.obolibrary.org/obo/UBERON_0003175) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000815" + +#### Added +- [obsolete prescutum](http://purl.obolibrary.org/obo/UBERON_0003175) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004582](http://purl.obolibrary.org/obo/FBbt_00004582) + +- [obsolete prescutum](http://purl.obolibrary.org/obo/UBERON_0003175) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000815](http://purl.obolibrary.org/obo/HAO_0000815) + + +### obsolete pretarsus `http://purl.obolibrary.org/obo/UBERON_0003187` +#### Removed +- [obsolete pretarsus](http://purl.obolibrary.org/obo/UBERON_0003187) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004653" + +- [obsolete pretarsus](http://purl.obolibrary.org/obo/UBERON_0003187) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000820" + +#### Added +- [obsolete pretarsus](http://purl.obolibrary.org/obo/UBERON_0003187) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000820](http://purl.obolibrary.org/obo/HAO_0000820) + +- [obsolete pretarsus](http://purl.obolibrary.org/obo/UBERON_0003187) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004653](http://purl.obolibrary.org/obo/FBbt_00004653) + + +### obsolete prezygapophyses `http://purl.obolibrary.org/obo/UBERON_4100120` +#### Removed +- [obsolete prezygapophyses](http://purl.obolibrary.org/obo/UBERON_4100120) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0001079" + +#### Added +- [obsolete prezygapophyses](http://purl.obolibrary.org/obo/UBERON_4100120) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [prezygapophysis](http://purl.obolibrary.org/obo/UBERON_0001079) + + +### obsolete primary oogonium `http://purl.obolibrary.org/obo/UBERON_3010297` +#### Removed +- [obsolete primary oogonium](http://purl.obolibrary.org/obo/UBERON_3010297) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000654" + +#### Added +- [obsolete primary oogonium](http://purl.obolibrary.org/obo/UBERON_3010297) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000654](http://purl.obolibrary.org/obo/CL_0000654) + + +### obsolete primary spermatogonium `http://purl.obolibrary.org/obo/UBERON_3010298` +#### Removed +- [obsolete primary spermatogonium](http://purl.obolibrary.org/obo/UBERON_3010298) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000656" + +#### Added +- [obsolete primary spermatogonium](http://purl.obolibrary.org/obo/UBERON_3010298) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000656](http://purl.obolibrary.org/obo/CL_0000656) + + +### obsolete primordial germ cell `http://purl.obolibrary.org/obo/UBERON_3010293` +#### Removed +- [obsolete primordial germ cell](http://purl.obolibrary.org/obo/UBERON_3010293) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000670" + +#### Added +- [obsolete primordial germ cell](http://purl.obolibrary.org/obo/UBERON_3010293) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000670](http://purl.obolibrary.org/obo/CL_0000670) + + +### obsolete principal cavity `http://purl.obolibrary.org/obo/UBERON_3000992` +#### Removed +- [obsolete principal cavity](http://purl.obolibrary.org/obo/UBERON_3000992) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:3000089" + +#### Added +- [obsolete principal cavity](http://purl.obolibrary.org/obo/UBERON_3000992) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [cavum principale](http://purl.obolibrary.org/obo/UBERON_3000089) + + +### obsolete proboscis `http://purl.obolibrary.org/obo/UBERON_0035961` +#### Removed +- [obsolete proboscis](http://purl.obolibrary.org/obo/UBERON_0035961) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0014479" + +- [obsolete proboscis](http://purl.obolibrary.org/obo/UBERON_0035961) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BTO:0001117" + +#### Added +- [obsolete proboscis](http://purl.obolibrary.org/obo/UBERON_0035961) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [elephant trunk](http://purl.obolibrary.org/obo/UBERON_0014479) + +- [obsolete proboscis](http://purl.obolibrary.org/obo/UBERON_0035961) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BTO_0001117](http://purl.obolibrary.org/obo/BTO_0001117) + + +### obsolete proneural cluster `http://purl.obolibrary.org/obo/UBERON_0000937` +#### Removed +- [obsolete proneural cluster](http://purl.obolibrary.org/obo/UBERON_0000937) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "ZFA:0000068" + +- [obsolete proneural cluster](http://purl.obolibrary.org/obo/UBERON_0000937) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00001135" + +#### Added +- [obsolete proneural cluster](http://purl.obolibrary.org/obo/UBERON_0000937) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ZFA_0000068](http://purl.obolibrary.org/obo/ZFA_0000068) + +- [obsolete proneural cluster](http://purl.obolibrary.org/obo/UBERON_0000937) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00001135](http://purl.obolibrary.org/obo/FBbt_00001135) + + +### obsolete pronotum `http://purl.obolibrary.org/obo/UBERON_0003173` +#### Removed +- [obsolete pronotum](http://purl.obolibrary.org/obo/UBERON_0003173) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000853" + +- [obsolete pronotum](http://purl.obolibrary.org/obo/UBERON_0003173) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004561" + +#### Added +- [obsolete pronotum](http://purl.obolibrary.org/obo/UBERON_0003173) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004561](http://purl.obolibrary.org/obo/FBbt_00004561) + +- [obsolete pronotum](http://purl.obolibrary.org/obo/UBERON_0003173) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000853](http://purl.obolibrary.org/obo/HAO_0000853) + + +### obsolete pronucleus `http://purl.obolibrary.org/obo/UBERON_0000921` +#### Removed +- [obsolete pronucleus](http://purl.obolibrary.org/obo/UBERON_0000921) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "GO:0045120" + +- [obsolete pronucleus](http://purl.obolibrary.org/obo/UBERON_0000921) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:84673" + +- [obsolete pronucleus](http://purl.obolibrary.org/obo/UBERON_0000921) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00000048" + +- [obsolete pronucleus](http://purl.obolibrary.org/obo/UBERON_0000921) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GO:0045120" + +#### Added +- [obsolete pronucleus](http://purl.obolibrary.org/obo/UBERON_0000921) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GO_0045120](http://purl.obolibrary.org/obo/GO_0045120) + +- [obsolete pronucleus](http://purl.obolibrary.org/obo/UBERON_0000921) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00000048](http://purl.obolibrary.org/obo/FBbt_00000048) + +- [obsolete pronucleus](http://purl.obolibrary.org/obo/UBERON_0000921) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_84673](http://purl.obolibrary.org/obo/FMA_84673) + +- [obsolete pronucleus](http://purl.obolibrary.org/obo/UBERON_0000921) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [GO_0045120](http://purl.obolibrary.org/obo/GO_0045120) + + +### obsolete proteinaceous extracellular matrix `http://purl.obolibrary.org/obo/UBERON_0011586` +#### Removed +- [obsolete proteinaceous extracellular matrix](http://purl.obolibrary.org/obo/UBERON_0011586) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "VSAO:0000021" + +- [obsolete proteinaceous extracellular matrix](http://purl.obolibrary.org/obo/UBERON_0011586) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GO:0005578" + +#### Added +- [obsolete proteinaceous extracellular matrix](http://purl.obolibrary.org/obo/UBERON_0011586) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GO_0005578](http://purl.obolibrary.org/obo/GO_0005578) + +- [obsolete proteinaceous extracellular matrix](http://purl.obolibrary.org/obo/UBERON_0011586) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [VSAO_0000021](http://purl.obolibrary.org/obo/VSAO_0000021) + + +### obsolete proteinaceous extracellular matrix `http://purl.obolibrary.org/obo/UBERON_4000021` +#### Removed +- [obsolete proteinaceous extracellular matrix](http://purl.obolibrary.org/obo/UBERON_4000021) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "GO:0005578" + +#### Added +- [obsolete proteinaceous extracellular matrix](http://purl.obolibrary.org/obo/UBERON_4000021) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [GO_0005578](http://purl.obolibrary.org/obo/GO_0005578) + + +### obsolete pterygoid `http://purl.obolibrary.org/obo/UBERON_3000521` +#### Removed +- [obsolete pterygoid](http://purl.obolibrary.org/obo/UBERON_3000521) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0010389" + +#### Added +- [obsolete pterygoid](http://purl.obolibrary.org/obo/UBERON_3000521) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [pterygoid bone](http://purl.obolibrary.org/obo/UBERON_0010389) + + +### obsolete pterygoideus `http://purl.obolibrary.org/obo/UBERON_3010730` +#### Removed +- [obsolete pterygoideus](http://purl.obolibrary.org/obo/UBERON_3010730) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0006720" + +#### Added +- [obsolete pterygoideus](http://purl.obolibrary.org/obo/UBERON_3010730) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [pterygoid muscle](http://purl.obolibrary.org/obo/UBERON_0006720) + + +### obsolete pyloric caecum `http://purl.obolibrary.org/obo/UBERON_2002253` +#### Removed +- [obsolete pyloric caecum](http://purl.obolibrary.org/obo/UBERON_2002253) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0008248" + +#### Added +- [obsolete pyloric caecum](http://purl.obolibrary.org/obo/UBERON_2002253) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [echinoderm pyloric cecum](http://purl.obolibrary.org/obo/UBERON_0008248) + + +### obsolete rectal gland `http://purl.obolibrary.org/obo/UBERON_0000360` +#### Removed +- [obsolete rectal gland](http://purl.obolibrary.org/obo/UBERON_0000360) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0004760" + +- [obsolete rectal gland](http://purl.obolibrary.org/obo/UBERON_0000360) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0004758" + +- [obsolete rectal gland](http://purl.obolibrary.org/obo/UBERON_0000360) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0004757" + +- [obsolete rectal gland](http://purl.obolibrary.org/obo/UBERON_0000360) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0004759" + +#### Added +- [obsolete rectal gland](http://purl.obolibrary.org/obo/UBERON_0000360) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [salt gland](http://purl.obolibrary.org/obo/UBERON_0004758) + +- [obsolete rectal gland](http://purl.obolibrary.org/obo/UBERON_0000360) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [rectal salt gland](http://purl.obolibrary.org/obo/UBERON_0004757) + +- [obsolete rectal gland](http://purl.obolibrary.org/obo/UBERON_0000360) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [cranial salt gland](http://purl.obolibrary.org/obo/UBERON_0004759) + +- [obsolete rectal gland](http://purl.obolibrary.org/obo/UBERON_0000360) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [gland of anal canal](http://purl.obolibrary.org/obo/UBERON_0004760) + + +### obsolete region of thorax `http://purl.obolibrary.org/obo/UBERON_0005482` +#### Removed +- [obsolete region of thorax](http://purl.obolibrary.org/obo/UBERON_0005482) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:20358" + +- [obsolete region of thorax](http://purl.obolibrary.org/obo/UBERON_0005482) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "SCTID:425803006" + +#### Added +- [obsolete region of thorax](http://purl.obolibrary.org/obo/UBERON_0005482) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_20358](http://purl.obolibrary.org/obo/FMA_20358) + +- [obsolete region of thorax](http://purl.obolibrary.org/obo/UBERON_0005482) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [SCTID_425803006](http://purl.obolibrary.org/obo/SCTID_425803006) + + +### obsolete regional Parts of the Interpositus Nucleus `http://purl.obolibrary.org/obo/UBERON_0027314` +#### Removed +- [obsolete regional Parts of the Interpositus Nucleus](http://purl.obolibrary.org/obo/UBERON_0027314) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:20081243" + +#### Added +- [obsolete regional Parts of the Interpositus Nucleus](http://purl.obolibrary.org/obo/UBERON_0027314) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_20081243](http://purl.obolibrary.org/obo/NLXANAT_20081243) + + +### obsolete regional part of Anterior cingulate cortex `http://purl.obolibrary.org/obo/UBERON_0027076` +#### Removed +- [obsolete regional part of Anterior cingulate cortex](http://purl.obolibrary.org/obo/UBERON_0027076) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:960" + +#### Added +- [obsolete regional part of Anterior cingulate cortex](http://purl.obolibrary.org/obo/UBERON_0027076) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_960](http://purl.obolibrary.org/obo/BIRNLEX_960) + + +### obsolete regional part of Parahippocampal gyrus `http://purl.obolibrary.org/obo/UBERON_0024394` +#### Removed +- [obsolete regional part of Parahippocampal gyrus](http://purl.obolibrary.org/obo/UBERON_0024394) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1278" + +#### Added +- [obsolete regional part of Parahippocampal gyrus](http://purl.obolibrary.org/obo/UBERON_0024394) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1278](http://purl.obolibrary.org/obo/BIRNLEX_1278) + + +### obsolete regional part of Preoptic area `http://purl.obolibrary.org/obo/UBERON_0024828` +#### Removed +- [obsolete regional part of Preoptic area](http://purl.obolibrary.org/obo/UBERON_0024828) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1715" + +#### Added +- [obsolete regional part of Preoptic area](http://purl.obolibrary.org/obo/UBERON_0024828) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1715](http://purl.obolibrary.org/obo/BIRNLEX_1715) + + +### obsolete regional part of a lobe of the cerebellum `http://purl.obolibrary.org/obo/UBERON_0022569` +#### Removed +- [obsolete regional part of a lobe of the cerebellum](http://purl.obolibrary.org/obo/UBERON_0022569) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1094" + +#### Added +- [obsolete regional part of a lobe of the cerebellum](http://purl.obolibrary.org/obo/UBERON_0022569) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1094](http://purl.obolibrary.org/obo/BIRNLEX_1094) + + +### obsolete regional part of adenohypophysis `http://purl.obolibrary.org/obo/UBERON_0024125` +#### Removed +- [obsolete regional part of adenohypophysis](http://purl.obolibrary.org/obo/UBERON_0024125) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1004" + +#### Added +- [obsolete regional part of adenohypophysis](http://purl.obolibrary.org/obo/UBERON_0024125) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1004](http://purl.obolibrary.org/obo/BIRNLEX_1004) + + +### obsolete regional part of amygdala `http://purl.obolibrary.org/obo/UBERON_0023404` +#### Removed +- [obsolete regional part of amygdala](http://purl.obolibrary.org/obo/UBERON_0023404) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2678" + +#### Added +- [obsolete regional part of amygdala](http://purl.obolibrary.org/obo/UBERON_0023404) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2678](http://purl.obolibrary.org/obo/BIRNLEX_2678) + + +### obsolete regional part of anterior commissure `http://purl.obolibrary.org/obo/UBERON_0025254` +#### Removed +- [obsolete regional part of anterior commissure](http://purl.obolibrary.org/obo/UBERON_0025254) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:742" + +#### Added +- [obsolete regional part of anterior commissure](http://purl.obolibrary.org/obo/UBERON_0025254) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_742](http://purl.obolibrary.org/obo/BIRNLEX_742) + + +### obsolete regional part of anterior hypothalamic region `http://purl.obolibrary.org/obo/UBERON_0023628` +#### Removed +- [obsolete regional part of anterior hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0023628) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:761" + +#### Added +- [obsolete regional part of anterior hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0023628) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_761](http://purl.obolibrary.org/obo/BIRNLEX_761) + + +### obsolete regional part of anterior nucleus of hypothalamus `http://purl.obolibrary.org/obo/UBERON_0025848` +#### Removed +- [obsolete regional part of anterior nucleus of hypothalamus](http://purl.obolibrary.org/obo/UBERON_0025848) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1098" + +#### Added +- [obsolete regional part of anterior nucleus of hypothalamus](http://purl.obolibrary.org/obo/UBERON_0025848) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1098](http://purl.obolibrary.org/obo/BIRNLEX_1098) + + +### obsolete regional part of autonomic nervous system `http://purl.obolibrary.org/obo/UBERON_0024254` +#### Removed +- [obsolete regional part of autonomic nervous system](http://purl.obolibrary.org/obo/UBERON_0024254) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1134" + +#### Added +- [obsolete regional part of autonomic nervous system](http://purl.obolibrary.org/obo/UBERON_0024254) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1134](http://purl.obolibrary.org/obo/BIRNLEX_1134) + + +### obsolete regional part of basal amygdaloid nucleus `http://purl.obolibrary.org/obo/UBERON_0028326` +#### Removed +- [obsolete regional part of basal amygdaloid nucleus](http://purl.obolibrary.org/obo/UBERON_0028326) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2693" + +#### Added +- [obsolete regional part of basal amygdaloid nucleus](http://purl.obolibrary.org/obo/UBERON_0028326) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2693](http://purl.obolibrary.org/obo/BIRNLEX_2693) + + +### obsolete regional part of basal nuclear complex `http://purl.obolibrary.org/obo/UBERON_0023572` +#### Removed +- [obsolete regional part of basal nuclear complex](http://purl.obolibrary.org/obo/UBERON_0023572) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:702" + +#### Added +- [obsolete regional part of basal nuclear complex](http://purl.obolibrary.org/obo/UBERON_0023572) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_702](http://purl.obolibrary.org/obo/BIRNLEX_702) + + +### obsolete regional part of basal part of pons `http://purl.obolibrary.org/obo/UBERON_0024285` +#### Removed +- [obsolete regional part of basal part of pons](http://purl.obolibrary.org/obo/UBERON_0024285) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1168" + +#### Added +- [obsolete regional part of basal part of pons](http://purl.obolibrary.org/obo/UBERON_0024285) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1168](http://purl.obolibrary.org/obo/BIRNLEX_1168) + + +### obsolete regional part of basilar membrane `http://purl.obolibrary.org/obo/UBERON_0029822` +#### Removed +- [obsolete regional part of basilar membrane](http://purl.obolibrary.org/obo/UBERON_0029822) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2527" + +#### Added +- [obsolete regional part of basilar membrane](http://purl.obolibrary.org/obo/UBERON_0029822) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2527](http://purl.obolibrary.org/obo/BIRNLEX_2527) + + +### obsolete regional part of basolateral nuclear complex `http://purl.obolibrary.org/obo/UBERON_0026686` +#### Removed +- [obsolete regional part of basolateral nuclear complex](http://purl.obolibrary.org/obo/UBERON_0026686) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2685" + +#### Added +- [obsolete regional part of basolateral nuclear complex](http://purl.obolibrary.org/obo/UBERON_0026686) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2685](http://purl.obolibrary.org/obo/BIRNLEX_2685) + + +### obsolete regional part of body system `http://purl.obolibrary.org/obo/UBERON_0022575` +#### Removed +- [obsolete regional part of body system](http://purl.obolibrary.org/obo/UBERON_0022575) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:11" + +#### Added +- [obsolete regional part of body system](http://purl.obolibrary.org/obo/UBERON_0022575) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_11](http://purl.obolibrary.org/obo/BIRNLEX_11) + + +### obsolete regional part of calcarine sulcus `http://purl.obolibrary.org/obo/UBERON_0026762` +#### Removed +- [obsolete regional part of calcarine sulcus](http://purl.obolibrary.org/obo/UBERON_0026762) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:4049" + +#### Added +- [obsolete regional part of calcarine sulcus](http://purl.obolibrary.org/obo/UBERON_0026762) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_4049](http://purl.obolibrary.org/obo/BIRNLEX_4049) + + +### obsolete regional part of caudate nucleus `http://purl.obolibrary.org/obo/UBERON_0027584` +#### Removed +- [obsolete regional part of caudate nucleus](http://purl.obolibrary.org/obo/UBERON_0027584) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1205" + +#### Added +- [obsolete regional part of caudate nucleus](http://purl.obolibrary.org/obo/UBERON_0027584) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1205](http://purl.obolibrary.org/obo/BIRNLEX_1205) + + +### obsolete regional part of central nervous system `http://purl.obolibrary.org/obo/UBERON_0022741` +#### Removed +- [obsolete regional part of central nervous system](http://purl.obolibrary.org/obo/UBERON_0022741) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1269" + +#### Added +- [obsolete regional part of central nervous system](http://purl.obolibrary.org/obo/UBERON_0022741) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1269](http://purl.obolibrary.org/obo/BIRNLEX_1269) + + +### obsolete regional part of cerebellar peduncular complex `http://purl.obolibrary.org/obo/UBERON_0027094` +#### Removed +- [obsolete regional part of cerebellar peduncular complex](http://purl.obolibrary.org/obo/UBERON_0027094) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:979" + +#### Added +- [obsolete regional part of cerebellar peduncular complex](http://purl.obolibrary.org/obo/UBERON_0027094) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_979](http://purl.obolibrary.org/obo/BIRNLEX_979) + + +### obsolete regional part of cerebellar white matter `http://purl.obolibrary.org/obo/UBERON_0025444` +#### Removed +- [obsolete regional part of cerebellar white matter](http://purl.obolibrary.org/obo/UBERON_0025444) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:959" + +#### Added +- [obsolete regional part of cerebellar white matter](http://purl.obolibrary.org/obo/UBERON_0025444) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_959](http://purl.obolibrary.org/obo/BIRNLEX_959) + + +### obsolete regional part of cerebellar white matter `http://purl.obolibrary.org/obo/UBERON_0003035` +#### Removed +- [obsolete regional part of cerebellar white matter](http://purl.obolibrary.org/obo/UBERON_0003035) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:72547" + +- [obsolete regional part of cerebellar white matter](http://purl.obolibrary.org/obo/UBERON_0003035) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:959" + +#### Added +- [obsolete regional part of cerebellar white matter](http://purl.obolibrary.org/obo/UBERON_0003035) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_959](http://purl.obolibrary.org/obo/BIRNLEX_959) + +- [obsolete regional part of cerebellar white matter](http://purl.obolibrary.org/obo/UBERON_0003035) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_72547](http://purl.obolibrary.org/obo/FMA_72547) + + +### obsolete regional part of cerebellum `http://purl.obolibrary.org/obo/UBERON_0002946` +#### Removed +- [obsolete regional part of cerebellum](http://purl.obolibrary.org/obo/UBERON_0002946) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "SCTID:119242005" + +- [obsolete regional part of cerebellum](http://purl.obolibrary.org/obo/UBERON_0002946) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:256150" + +- [obsolete regional part of cerebellum](http://purl.obolibrary.org/obo/UBERON_0002946) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:748" + +- [obsolete regional part of cerebellum](http://purl.obolibrary.org/obo/UBERON_0002946) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0002037" + +#### Added +- [obsolete regional part of cerebellum](http://purl.obolibrary.org/obo/UBERON_0002946) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [SCTID_119242005](http://purl.obolibrary.org/obo/SCTID_119242005) + +- [obsolete regional part of cerebellum](http://purl.obolibrary.org/obo/UBERON_0002946) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_748](http://purl.obolibrary.org/obo/BIRNLEX_748) + +- [obsolete regional part of cerebellum](http://purl.obolibrary.org/obo/UBERON_0002946) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_256150](http://purl.obolibrary.org/obo/FMA_256150) + +- [obsolete regional part of cerebellum](http://purl.obolibrary.org/obo/UBERON_0002946) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [cerebellum](http://purl.obolibrary.org/obo/UBERON_0002037) + + +### obsolete regional part of cerebral cortex `http://purl.obolibrary.org/obo/UBERON_0002619` +#### Removed +- [obsolete regional part of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0002619) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MA:0000187" + +- [obsolete regional part of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0002619) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "SCTID:119408004" + +- [obsolete regional part of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0002619) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1173" + +- [obsolete regional part of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0002619) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EMAPA:35589" + +- [obsolete regional part of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0002619) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:242193" + +#### Added +- [obsolete regional part of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0002619) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_242193](http://purl.obolibrary.org/obo/FMA_242193) + +- [obsolete regional part of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0002619) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [SCTID_119408004](http://purl.obolibrary.org/obo/SCTID_119408004) + +- [obsolete regional part of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0002619) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MA_0000187](http://purl.obolibrary.org/obo/MA_0000187) + +- [obsolete regional part of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0002619) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EMAPA_35589](http://purl.obolibrary.org/obo/EMAPA_35589) + +- [obsolete regional part of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0002619) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1173](http://purl.obolibrary.org/obo/BIRNLEX_1173) + + +### obsolete regional part of cerebral peduncle `http://purl.obolibrary.org/obo/UBERON_0022681` +#### Removed +- [obsolete regional part of cerebral peduncle](http://purl.obolibrary.org/obo/UBERON_0022681) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1209" + +#### Added +- [obsolete regional part of cerebral peduncle](http://purl.obolibrary.org/obo/UBERON_0022681) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1209](http://purl.obolibrary.org/obo/BIRNLEX_1209) + + +### obsolete regional part of cerebral ventricular cavity `http://purl.obolibrary.org/obo/UBERON_0026000` +#### Removed +- [obsolete regional part of cerebral ventricular cavity](http://purl.obolibrary.org/obo/UBERON_0026000) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1253" + +#### Added +- [obsolete regional part of cerebral ventricular cavity](http://purl.obolibrary.org/obo/UBERON_0026000) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1253](http://purl.obolibrary.org/obo/BIRNLEX_1253) + + +### obsolete regional part of cerebral white matter `http://purl.obolibrary.org/obo/UBERON_0023044` +#### Removed +- [obsolete regional part of cerebral white matter](http://purl.obolibrary.org/obo/UBERON_0023044) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1573" + +#### Added +- [obsolete regional part of cerebral white matter](http://purl.obolibrary.org/obo/UBERON_0023044) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1573](http://purl.obolibrary.org/obo/BIRNLEX_1573) + + +### obsolete regional part of cervical spinal cord `http://purl.obolibrary.org/obo/UBERON_0022976` +#### Removed +- [obsolete regional part of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0022976) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1505" + +#### Added +- [obsolete regional part of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0022976) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1505](http://purl.obolibrary.org/obo/BIRNLEX_1505) + + +### obsolete regional part of cervical spinal cord dorsal horn `http://purl.obolibrary.org/obo/UBERON_0028079` +#### Removed +- [obsolete regional part of cervical spinal cord dorsal horn](http://purl.obolibrary.org/obo/UBERON_0028079) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1703" + +#### Added +- [obsolete regional part of cervical spinal cord dorsal horn](http://purl.obolibrary.org/obo/UBERON_0028079) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1703](http://purl.obolibrary.org/obo/BIRNLEX_1703) + + +### obsolete regional part of cervical spinal cord gray matter `http://purl.obolibrary.org/obo/UBERON_0026271` +#### Removed +- [obsolete regional part of cervical spinal cord gray matter](http://purl.obolibrary.org/obo/UBERON_0026271) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1525" + +#### Added +- [obsolete regional part of cervical spinal cord gray matter](http://purl.obolibrary.org/obo/UBERON_0026271) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1525](http://purl.obolibrary.org/obo/BIRNLEX_1525) + + +### obsolete regional part of cervical spinal cord white matter `http://purl.obolibrary.org/obo/UBERON_0025236` +#### Removed +- [obsolete regional part of cervical spinal cord white matter](http://purl.obolibrary.org/obo/UBERON_0025236) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:723" + +#### Added +- [obsolete regional part of cervical spinal cord white matter](http://purl.obolibrary.org/obo/UBERON_0025236) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_723](http://purl.obolibrary.org/obo/BIRNLEX_723) + + +### obsolete regional part of cingulate cortex `http://purl.obolibrary.org/obo/UBERON_0025418` +#### Removed +- [obsolete regional part of cingulate cortex](http://purl.obolibrary.org/obo/UBERON_0025418) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:930" + +#### Added +- [obsolete regional part of cingulate cortex](http://purl.obolibrary.org/obo/UBERON_0025418) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_930](http://purl.obolibrary.org/obo/BIRNLEX_930) + + +### obsolete regional part of cingulate gyrus `http://purl.obolibrary.org/obo/UBERON_0024714` +#### Removed +- [obsolete regional part of cingulate gyrus](http://purl.obolibrary.org/obo/UBERON_0024714) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1599" + +#### Added +- [obsolete regional part of cingulate gyrus](http://purl.obolibrary.org/obo/UBERON_0024714) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1599](http://purl.obolibrary.org/obo/BIRNLEX_1599) + + +### obsolete regional part of cochlea `http://purl.obolibrary.org/obo/UBERON_0026536` +#### Removed +- [obsolete regional part of cochlea](http://purl.obolibrary.org/obo/UBERON_0026536) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1794" + +- [obsolete regional part of cochlea](http://purl.obolibrary.org/obo/UBERON_0026536) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UMLS:C0931696" + +#### Added +- [obsolete regional part of cochlea](http://purl.obolibrary.org/obo/UBERON_0026536) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1794](http://purl.obolibrary.org/obo/BIRNLEX_1794) + +- [obsolete regional part of cochlea](http://purl.obolibrary.org/obo/UBERON_0026536) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [UMLS_C0931696](http://purl.obolibrary.org/obo/UMLS_C0931696) + + +### obsolete regional part of cochlear canal `http://purl.obolibrary.org/obo/UBERON_0024946` +#### Removed +- [obsolete regional part of cochlear canal](http://purl.obolibrary.org/obo/UBERON_0024946) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UMLS:C0458763" + +- [obsolete regional part of cochlear canal](http://purl.obolibrary.org/obo/UBERON_0024946) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2554" + +#### Added +- [obsolete regional part of cochlear canal](http://purl.obolibrary.org/obo/UBERON_0024946) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2554](http://purl.obolibrary.org/obo/BIRNLEX_2554) + +- [obsolete regional part of cochlear canal](http://purl.obolibrary.org/obo/UBERON_0024946) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [UMLS_C0458763](http://purl.obolibrary.org/obo/UMLS_C0458763) + + +### obsolete regional part of cochlear duct `http://purl.obolibrary.org/obo/UBERON_0026588` +#### Removed +- [obsolete regional part of cochlear duct](http://purl.obolibrary.org/obo/UBERON_0026588) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2565" + +- [obsolete regional part of cochlear duct](http://purl.obolibrary.org/obo/UBERON_0026588) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UMLS:C1186240" + +#### Added +- [obsolete regional part of cochlear duct](http://purl.obolibrary.org/obo/UBERON_0026588) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2565](http://purl.obolibrary.org/obo/BIRNLEX_2565) + +- [obsolete regional part of cochlear duct](http://purl.obolibrary.org/obo/UBERON_0026588) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [UMLS_C1186240](http://purl.obolibrary.org/obo/UMLS_C1186240) + + +### obsolete regional part of cochlear nuclear complex `http://purl.obolibrary.org/obo/UBERON_0002621` +#### Removed +- [obsolete regional part of cochlear nuclear complex](http://purl.obolibrary.org/obo/UBERON_0002621) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1195" + +- [obsolete regional part of cochlear nuclear complex](http://purl.obolibrary.org/obo/UBERON_0002621) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:83952" + +#### Added +- [obsolete regional part of cochlear nuclear complex](http://purl.obolibrary.org/obo/UBERON_0002621) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1195](http://purl.obolibrary.org/obo/BIRNLEX_1195) + +- [obsolete regional part of cochlear nuclear complex](http://purl.obolibrary.org/obo/UBERON_0002621) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_83952](http://purl.obolibrary.org/obo/FMA_83952) + + +### obsolete regional part of corticomedial nuclear complex `http://purl.obolibrary.org/obo/UBERON_0025067` +#### Removed +- [obsolete regional part of corticomedial nuclear complex](http://purl.obolibrary.org/obo/UBERON_0025067) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2697" + +#### Added +- [obsolete regional part of corticomedial nuclear complex](http://purl.obolibrary.org/obo/UBERON_0025067) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2697](http://purl.obolibrary.org/obo/BIRNLEX_2697) + + +### obsolete regional part of deep cerebellar nuclear complex `http://purl.obolibrary.org/obo/UBERON_0024234` +#### Removed +- [obsolete regional part of deep cerebellar nuclear complex](http://purl.obolibrary.org/obo/UBERON_0024234) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1114" + +#### Added +- [obsolete regional part of deep cerebellar nuclear complex](http://purl.obolibrary.org/obo/UBERON_0024234) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1114](http://purl.obolibrary.org/obo/BIRNLEX_1114) + + +### obsolete regional part of dentate gyrus `http://purl.obolibrary.org/obo/UBERON_0025897` +#### Removed +- [obsolete regional part of dentate gyrus](http://purl.obolibrary.org/obo/UBERON_0025897) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1147" + +#### Added +- [obsolete regional part of dentate gyrus](http://purl.obolibrary.org/obo/UBERON_0025897) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1147](http://purl.obolibrary.org/obo/BIRNLEX_1147) + + +### obsolete regional part of dentate nucleus `http://purl.obolibrary.org/obo/UBERON_0025930` +#### Removed +- [obsolete regional part of dentate nucleus](http://purl.obolibrary.org/obo/UBERON_0025930) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1182" + +#### Added +- [obsolete regional part of dentate nucleus](http://purl.obolibrary.org/obo/UBERON_0025930) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1182](http://purl.obolibrary.org/obo/BIRNLEX_1182) + + +### obsolete regional part of diencephalon `http://purl.obolibrary.org/obo/UBERON_0002784` +#### Removed +- [obsolete regional part of diencephalon](http://purl.obolibrary.org/obo/UBERON_0002784) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1685" + +- [obsolete regional part of diencephalon](http://purl.obolibrary.org/obo/UBERON_0002784) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "SCTID:119264001" + +- [obsolete regional part of diencephalon](http://purl.obolibrary.org/obo/UBERON_0002784) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:62005" + +#### Added +- [obsolete regional part of diencephalon](http://purl.obolibrary.org/obo/UBERON_0002784) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_62005](http://purl.obolibrary.org/obo/FMA_62005) + +- [obsolete regional part of diencephalon](http://purl.obolibrary.org/obo/UBERON_0002784) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1685](http://purl.obolibrary.org/obo/BIRNLEX_1685) + +- [obsolete regional part of diencephalon](http://purl.obolibrary.org/obo/UBERON_0002784) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [SCTID_119264001](http://purl.obolibrary.org/obo/SCTID_119264001) + + +### obsolete regional part of dorsal cochlear nucleus `http://purl.obolibrary.org/obo/UBERON_0025744` +#### Removed +- [obsolete regional part of dorsal cochlear nucleus](http://purl.obolibrary.org/obo/UBERON_0025744) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:20090510" + +#### Added +- [obsolete regional part of dorsal cochlear nucleus](http://purl.obolibrary.org/obo/UBERON_0025744) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_20090510](http://purl.obolibrary.org/obo/NLXANAT_20090510) + + +### obsolete regional part of ear `http://purl.obolibrary.org/obo/UBERON_0022654` +#### Removed +- [obsolete regional part of ear](http://purl.obolibrary.org/obo/UBERON_0022654) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1181" + +#### Added +- [obsolete regional part of ear](http://purl.obolibrary.org/obo/UBERON_0022654) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1181](http://purl.obolibrary.org/obo/BIRNLEX_1181) + + +### obsolete regional part of enteric nervous system `http://purl.obolibrary.org/obo/UBERON_0025927` +#### Removed +- [obsolete regional part of enteric nervous system](http://purl.obolibrary.org/obo/UBERON_0025927) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1179" + +#### Added +- [obsolete regional part of enteric nervous system](http://purl.obolibrary.org/obo/UBERON_0025927) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1179](http://purl.obolibrary.org/obo/BIRNLEX_1179) + + +### obsolete regional part of entorhinal cortex `http://purl.obolibrary.org/obo/UBERON_0028337` +#### Removed +- [obsolete regional part of entorhinal cortex](http://purl.obolibrary.org/obo/UBERON_0028337) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2704" + +#### Added +- [obsolete regional part of entorhinal cortex](http://purl.obolibrary.org/obo/UBERON_0028337) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2704](http://purl.obolibrary.org/obo/BIRNLEX_2704) + + +### obsolete regional part of epithalamus `http://purl.obolibrary.org/obo/UBERON_0002757` +#### Removed +- [obsolete regional part of epithalamus](http://purl.obolibrary.org/obo/UBERON_0002757) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1607" + +- [obsolete regional part of epithalamus](http://purl.obolibrary.org/obo/UBERON_0002757) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:62013" + +#### Added +- [obsolete regional part of epithalamus](http://purl.obolibrary.org/obo/UBERON_0002757) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1607](http://purl.obolibrary.org/obo/BIRNLEX_1607) + +- [obsolete regional part of epithalamus](http://purl.obolibrary.org/obo/UBERON_0002757) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_62013](http://purl.obolibrary.org/obo/FMA_62013) + + +### obsolete regional part of eye `http://purl.obolibrary.org/obo/UBERON_0022620` +#### Removed +- [obsolete regional part of eye](http://purl.obolibrary.org/obo/UBERON_0022620) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1145" + +#### Added +- [obsolete regional part of eye](http://purl.obolibrary.org/obo/UBERON_0022620) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1145](http://purl.obolibrary.org/obo/BIRNLEX_1145) + + +### obsolete regional part of forebrain `http://purl.obolibrary.org/obo/UBERON_0002780` +#### Removed +- [obsolete regional part of forebrain](http://purl.obolibrary.org/obo/UBERON_0002780) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1677" + +- [obsolete regional part of forebrain](http://purl.obolibrary.org/obo/UBERON_0002780) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:61996" + +#### Added +- [obsolete regional part of forebrain](http://purl.obolibrary.org/obo/UBERON_0002780) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1677](http://purl.obolibrary.org/obo/BIRNLEX_1677) + +- [obsolete regional part of forebrain](http://purl.obolibrary.org/obo/UBERON_0002780) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_61996](http://purl.obolibrary.org/obo/FMA_61996) + + +### obsolete regional part of fornix `http://purl.obolibrary.org/obo/UBERON_0023703` +#### Removed +- [obsolete regional part of fornix](http://purl.obolibrary.org/obo/UBERON_0023703) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:842" + +#### Added +- [obsolete regional part of fornix](http://purl.obolibrary.org/obo/UBERON_0023703) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_842](http://purl.obolibrary.org/obo/BIRNLEX_842) + + +### obsolete regional part of fovea `http://purl.obolibrary.org/obo/UBERON_0028200` +#### Removed +- [obsolete regional part of fovea](http://purl.obolibrary.org/obo/UBERON_0028200) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2545" + +#### Added +- [obsolete regional part of fovea](http://purl.obolibrary.org/obo/UBERON_0028200) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2545](http://purl.obolibrary.org/obo/BIRNLEX_2545) + + +### obsolete regional part of frontal lobe `http://purl.obolibrary.org/obo/UBERON_0023824` +#### Removed +- [obsolete regional part of frontal lobe](http://purl.obolibrary.org/obo/UBERON_0023824) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:984" + +#### Added +- [obsolete regional part of frontal lobe](http://purl.obolibrary.org/obo/UBERON_0023824) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_984](http://purl.obolibrary.org/obo/BIRNLEX_984) + + +### obsolete regional part of globus pallidus `http://purl.obolibrary.org/obo/UBERON_0027603` +#### Removed +- [obsolete regional part of globus pallidus](http://purl.obolibrary.org/obo/UBERON_0027603) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1224" + +#### Added +- [obsolete regional part of globus pallidus](http://purl.obolibrary.org/obo/UBERON_0027603) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1224](http://purl.obolibrary.org/obo/BIRNLEX_1224) + + +### obsolete regional part of granular layer of cerebellar cortex `http://purl.obolibrary.org/obo/UBERON_0023648` +#### Removed +- [obsolete regional part of granular layer of cerebellar cortex](http://purl.obolibrary.org/obo/UBERON_0023648) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:784" + +#### Added +- [obsolete regional part of granular layer of cerebellar cortex](http://purl.obolibrary.org/obo/UBERON_0023648) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_784](http://purl.obolibrary.org/obo/BIRNLEX_784) + + +### obsolete regional part of gustatory epithelium `http://purl.obolibrary.org/obo/UBERON_0025182` +#### Removed +- [obsolete regional part of gustatory epithelium](http://purl.obolibrary.org/obo/UBERON_0025182) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:4100" + +- [obsolete regional part of gustatory epithelium](http://purl.obolibrary.org/obo/UBERON_0025182) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "http://uri.neuinfo.org/nif/nifstd/nifext_13" + +#### Added +- [obsolete regional part of gustatory epithelium](http://purl.obolibrary.org/obo/UBERON_0025182) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_4100](http://purl.obolibrary.org/obo/BIRNLEX_4100) + +- [obsolete regional part of gustatory epithelium](http://purl.obolibrary.org/obo/UBERON_0025182) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [nifext_13](http://uri.neuinfo.org/nif/nifstd/nifext_13) + + +### obsolete regional part of habenula `http://purl.obolibrary.org/obo/UBERON_0022895` +#### Removed +- [obsolete regional part of habenula](http://purl.obolibrary.org/obo/UBERON_0022895) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1423" + +#### Added +- [obsolete regional part of habenula](http://purl.obolibrary.org/obo/UBERON_0022895) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1423](http://purl.obolibrary.org/obo/BIRNLEX_1423) + + +### obsolete regional part of hindbrain `http://purl.obolibrary.org/obo/UBERON_0023791` +#### Removed +- [obsolete regional part of hindbrain](http://purl.obolibrary.org/obo/UBERON_0023791) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:949" + +#### Added +- [obsolete regional part of hindbrain](http://purl.obolibrary.org/obo/UBERON_0023791) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_949](http://purl.obolibrary.org/obo/BIRNLEX_949) + + +### obsolete regional part of hippocampal formation `http://purl.obolibrary.org/obo/UBERON_0025268` +#### Removed +- [obsolete regional part of hippocampal formation](http://purl.obolibrary.org/obo/UBERON_0025268) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:757" + +#### Added +- [obsolete regional part of hippocampal formation](http://purl.obolibrary.org/obo/UBERON_0025268) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_757](http://purl.obolibrary.org/obo/BIRNLEX_757) + + +### obsolete regional part of hippocampus proper `http://purl.obolibrary.org/obo/UBERON_0025934` +#### Removed +- [obsolete regional part of hippocampus proper](http://purl.obolibrary.org/obo/UBERON_0025934) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1186" + +#### Added +- [obsolete regional part of hippocampus proper](http://purl.obolibrary.org/obo/UBERON_0025934) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1186](http://purl.obolibrary.org/obo/BIRNLEX_1186) + + +### obsolete regional part of hypophysis `http://purl.obolibrary.org/obo/UBERON_0023047` +#### Removed +- [obsolete regional part of hypophysis](http://purl.obolibrary.org/obo/UBERON_0023047) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1576" + +#### Added +- [obsolete regional part of hypophysis](http://purl.obolibrary.org/obo/UBERON_0023047) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1576](http://purl.obolibrary.org/obo/BIRNLEX_1576) + + +### obsolete regional part of hypothalamus `http://purl.obolibrary.org/obo/UBERON_0003048` +#### Removed +- [obsolete regional part of hypothalamus](http://purl.obolibrary.org/obo/UBERON_0003048) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:995" + +- [obsolete regional part of hypothalamus](http://purl.obolibrary.org/obo/UBERON_0003048) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:67706" + +- [obsolete regional part of hypothalamus](http://purl.obolibrary.org/obo/UBERON_0003048) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "SCTID:360454003" + +#### Added +- [obsolete regional part of hypothalamus](http://purl.obolibrary.org/obo/UBERON_0003048) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_995](http://purl.obolibrary.org/obo/BIRNLEX_995) + +- [obsolete regional part of hypothalamus](http://purl.obolibrary.org/obo/UBERON_0003048) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_67706](http://purl.obolibrary.org/obo/FMA_67706) + +- [obsolete regional part of hypothalamus](http://purl.obolibrary.org/obo/UBERON_0003048) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [SCTID_360454003](http://purl.obolibrary.org/obo/SCTID_360454003) + + +### obsolete regional part of inferior colliculus `http://purl.obolibrary.org/obo/UBERON_0002917` +#### Removed +- [obsolete regional part of inferior colliculus](http://purl.obolibrary.org/obo/UBERON_0002917) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:4036" + +- [obsolete regional part of inferior colliculus](http://purl.obolibrary.org/obo/UBERON_0002917) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:77871" + +#### Added +- [obsolete regional part of inferior colliculus](http://purl.obolibrary.org/obo/UBERON_0002917) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_77871](http://purl.obolibrary.org/obo/FMA_77871) + +- [obsolete regional part of inferior colliculus](http://purl.obolibrary.org/obo/UBERON_0002917) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_4036](http://purl.obolibrary.org/obo/BIRNLEX_4036) + + +### obsolete regional part of inferior frontal gyrus `http://purl.obolibrary.org/obo/UBERON_0025327` +#### Removed +- [obsolete regional part of inferior frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0025327) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:821" + +#### Added +- [obsolete regional part of inferior frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0025327) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_821](http://purl.obolibrary.org/obo/BIRNLEX_821) + + +### obsolete regional part of inferior olivary complex `http://purl.obolibrary.org/obo/UBERON_0002574` +#### Removed +- [obsolete regional part of inferior olivary complex](http://purl.obolibrary.org/obo/UBERON_0002574) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1052" + +- [obsolete regional part of inferior olivary complex](http://purl.obolibrary.org/obo/UBERON_0002574) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:71259" + +#### Added +- [obsolete regional part of inferior olivary complex](http://purl.obolibrary.org/obo/UBERON_0002574) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1052](http://purl.obolibrary.org/obo/BIRNLEX_1052) + +- [obsolete regional part of inferior olivary complex](http://purl.obolibrary.org/obo/UBERON_0002574) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_71259](http://purl.obolibrary.org/obo/FMA_71259) + + +### obsolete regional part of inferior parietal cortex `http://purl.obolibrary.org/obo/UBERON_0024479` +#### Removed +- [obsolete regional part of inferior parietal cortex](http://purl.obolibrary.org/obo/UBERON_0024479) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1364" + +#### Added +- [obsolete regional part of inferior parietal cortex](http://purl.obolibrary.org/obo/UBERON_0024479) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1364](http://purl.obolibrary.org/obo/BIRNLEX_1364) + + +### obsolete regional part of inner ear `http://purl.obolibrary.org/obo/UBERON_0024173` +#### Removed +- [obsolete regional part of inner ear](http://purl.obolibrary.org/obo/UBERON_0024173) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1053" + +#### Added +- [obsolete regional part of inner ear](http://purl.obolibrary.org/obo/UBERON_0024173) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1053](http://purl.obolibrary.org/obo/BIRNLEX_1053) + + +### obsolete regional part of intermediate hypothalamic region `http://purl.obolibrary.org/obo/UBERON_0002951` +#### Removed +- [obsolete regional part of intermediate hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0002951) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:62310" + +- [obsolete regional part of intermediate hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0002951) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:767" + +#### Added +- [obsolete regional part of intermediate hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0002951) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_62310](http://purl.obolibrary.org/obo/FMA_62310) + +- [obsolete regional part of intermediate hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0002951) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_767](http://purl.obolibrary.org/obo/BIRNLEX_767) + + +### obsolete regional part of lateral amygdaloid nucleus `http://purl.obolibrary.org/obo/UBERON_0029954` +#### Removed +- [obsolete regional part of lateral amygdaloid nucleus](http://purl.obolibrary.org/obo/UBERON_0029954) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2688" + +#### Added +- [obsolete regional part of lateral amygdaloid nucleus](http://purl.obolibrary.org/obo/UBERON_0029954) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2688](http://purl.obolibrary.org/obo/BIRNLEX_2688) + + +### obsolete regional part of lateral hypothalamic region `http://purl.obolibrary.org/obo/UBERON_0002785` +#### Removed +- [obsolete regional part of lateral hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0002785) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:62312" + +- [obsolete regional part of lateral hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0002785) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1687" + +#### Added +- [obsolete regional part of lateral hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0002785) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1687](http://purl.obolibrary.org/obo/BIRNLEX_1687) + +- [obsolete regional part of lateral hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0002785) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_62312](http://purl.obolibrary.org/obo/FMA_62312) + + +### obsolete regional part of lateral ventricle `http://purl.obolibrary.org/obo/UBERON_0027649` +#### Removed +- [obsolete regional part of lateral ventricle](http://purl.obolibrary.org/obo/UBERON_0027649) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1270" + +#### Added +- [obsolete regional part of lateral ventricle](http://purl.obolibrary.org/obo/UBERON_0027649) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1270](http://purl.obolibrary.org/obo/BIRNLEX_1270) + + +### obsolete regional part of limbic lobe `http://purl.obolibrary.org/obo/UBERON_0023789` +#### Removed +- [obsolete regional part of limbic lobe](http://purl.obolibrary.org/obo/UBERON_0023789) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:947" + +#### Added +- [obsolete regional part of limbic lobe](http://purl.obolibrary.org/obo/UBERON_0023789) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_947](http://purl.obolibrary.org/obo/BIRNLEX_947) + + +### obsolete regional part of longitudinal fissure `http://purl.obolibrary.org/obo/UBERON_0025128` +#### Removed +- [obsolete regional part of longitudinal fissure](http://purl.obolibrary.org/obo/UBERON_0025128) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:4046" + +#### Added +- [obsolete regional part of longitudinal fissure](http://purl.obolibrary.org/obo/UBERON_0025128) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_4046](http://purl.obolibrary.org/obo/BIRNLEX_4046) + + +### obsolete regional part of lumbar spinal cord `http://purl.obolibrary.org/obo/UBERON_0023074` +#### Removed +- [obsolete regional part of lumbar spinal cord](http://purl.obolibrary.org/obo/UBERON_0023074) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1602" + +#### Added +- [obsolete regional part of lumbar spinal cord](http://purl.obolibrary.org/obo/UBERON_0023074) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1602](http://purl.obolibrary.org/obo/BIRNLEX_1602) + + +### obsolete regional part of lumbar spinal cord dorsal horn `http://purl.obolibrary.org/obo/UBERON_0034667` +#### Removed +- [obsolete regional part of lumbar spinal cord dorsal horn](http://purl.obolibrary.org/obo/UBERON_0034667) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:791" + +#### Added +- [obsolete regional part of lumbar spinal cord dorsal horn](http://purl.obolibrary.org/obo/UBERON_0034667) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_791](http://purl.obolibrary.org/obo/BIRNLEX_791) + + +### obsolete regional part of lumbar spinal cord gray matter `http://purl.obolibrary.org/obo/UBERON_0028010` +#### Removed +- [obsolete regional part of lumbar spinal cord gray matter](http://purl.obolibrary.org/obo/UBERON_0028010) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1631" + +#### Added +- [obsolete regional part of lumbar spinal cord gray matter](http://purl.obolibrary.org/obo/UBERON_0028010) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1631](http://purl.obolibrary.org/obo/BIRNLEX_1631) + + +### obsolete regional part of lumbar spinal cord white matter `http://purl.obolibrary.org/obo/UBERON_0024762` +#### Removed +- [obsolete regional part of lumbar spinal cord white matter](http://purl.obolibrary.org/obo/UBERON_0024762) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1647" + +#### Added +- [obsolete regional part of lumbar spinal cord white matter](http://purl.obolibrary.org/obo/UBERON_0024762) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1647](http://purl.obolibrary.org/obo/BIRNLEX_1647) + + +### obsolete regional part of macula `http://purl.obolibrary.org/obo/UBERON_0026564` +#### Removed +- [obsolete regional part of macula](http://purl.obolibrary.org/obo/UBERON_0026564) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2541" + +#### Added +- [obsolete regional part of macula](http://purl.obolibrary.org/obo/UBERON_0026564) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2541](http://purl.obolibrary.org/obo/BIRNLEX_2541) + + +### obsolete regional part of medial mammillary nucleus `http://purl.obolibrary.org/obo/UBERON_0022778` +#### Removed +- [obsolete regional part of medial mammillary nucleus](http://purl.obolibrary.org/obo/UBERON_0022778) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1306" + +#### Added +- [obsolete regional part of medial mammillary nucleus](http://purl.obolibrary.org/obo/UBERON_0022778) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1306](http://purl.obolibrary.org/obo/BIRNLEX_1306) + + +### obsolete regional part of median eminence `http://purl.obolibrary.org/obo/UBERON_0026001` +#### Removed +- [obsolete regional part of median eminence](http://purl.obolibrary.org/obo/UBERON_0026001) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1254" + +#### Added +- [obsolete regional part of median eminence](http://purl.obolibrary.org/obo/UBERON_0026001) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1254](http://purl.obolibrary.org/obo/BIRNLEX_1254) + + +### obsolete regional part of medulla oblongata `http://purl.obolibrary.org/obo/UBERON_0002678` +#### Removed +- [obsolete regional part of medulla oblongata](http://purl.obolibrary.org/obo/UBERON_0002678) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:71011" + +- [obsolete regional part of medulla oblongata](http://purl.obolibrary.org/obo/UBERON_0002678) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1355" + +- [obsolete regional part of medulla oblongata](http://purl.obolibrary.org/obo/UBERON_0002678) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "SCTID:119241003" + +#### Added +- [obsolete regional part of medulla oblongata](http://purl.obolibrary.org/obo/UBERON_0002678) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_71011](http://purl.obolibrary.org/obo/FMA_71011) + +- [obsolete regional part of medulla oblongata](http://purl.obolibrary.org/obo/UBERON_0002678) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1355](http://purl.obolibrary.org/obo/BIRNLEX_1355) + +- [obsolete regional part of medulla oblongata](http://purl.obolibrary.org/obo/UBERON_0002678) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [SCTID_119241003](http://purl.obolibrary.org/obo/SCTID_119241003) + + +### obsolete regional part of medullary raphe nuclear complex `http://purl.obolibrary.org/obo/UBERON_0002677` +#### Removed +- [obsolete regional part of medullary raphe nuclear complex](http://purl.obolibrary.org/obo/UBERON_0002677) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1349" + +- [obsolete regional part of medullary raphe nuclear complex](http://purl.obolibrary.org/obo/UBERON_0002677) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:83951" + +#### Added +- [obsolete regional part of medullary raphe nuclear complex](http://purl.obolibrary.org/obo/UBERON_0002677) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_83951](http://purl.obolibrary.org/obo/FMA_83951) + +- [obsolete regional part of medullary raphe nuclear complex](http://purl.obolibrary.org/obo/UBERON_0002677) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1349](http://purl.obolibrary.org/obo/BIRNLEX_1349) + + +### obsolete regional part of medullary reticular formation `http://purl.obolibrary.org/obo/UBERON_0002579` +#### Removed +- [obsolete regional part of medullary reticular formation](http://purl.obolibrary.org/obo/UBERON_0002579) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1060" + +- [obsolete regional part of medullary reticular formation](http://purl.obolibrary.org/obo/UBERON_0002579) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:73730" + +#### Added +- [obsolete regional part of medullary reticular formation](http://purl.obolibrary.org/obo/UBERON_0002579) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1060](http://purl.obolibrary.org/obo/BIRNLEX_1060) + +- [obsolete regional part of medullary reticular formation](http://purl.obolibrary.org/obo/UBERON_0002579) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_73730](http://purl.obolibrary.org/obo/FMA_73730) + + +### obsolete regional part of metencephalon `http://purl.obolibrary.org/obo/UBERON_0002680` +#### Removed +- [obsolete regional part of metencephalon](http://purl.obolibrary.org/obo/UBERON_0002680) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:67942" + +- [obsolete regional part of metencephalon](http://purl.obolibrary.org/obo/UBERON_0002680) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1361" + +#### Added +- [obsolete regional part of metencephalon](http://purl.obolibrary.org/obo/UBERON_0002680) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1361](http://purl.obolibrary.org/obo/BIRNLEX_1361) + +- [obsolete regional part of metencephalon](http://purl.obolibrary.org/obo/UBERON_0002680) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_67942](http://purl.obolibrary.org/obo/FMA_67942) + + +### obsolete regional part of midbrain `http://purl.obolibrary.org/obo/UBERON_0002950` +#### Removed +- [obsolete regional part of midbrain](http://purl.obolibrary.org/obo/UBERON_0002950) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:61997" + +- [obsolete regional part of midbrain](http://purl.obolibrary.org/obo/UBERON_0002950) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:763" + +- [obsolete regional part of midbrain](http://purl.obolibrary.org/obo/UBERON_0002950) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "SCTID:119239004" + +#### Added +- [obsolete regional part of midbrain](http://purl.obolibrary.org/obo/UBERON_0002950) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_61997](http://purl.obolibrary.org/obo/FMA_61997) + +- [obsolete regional part of midbrain](http://purl.obolibrary.org/obo/UBERON_0002950) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_763](http://purl.obolibrary.org/obo/BIRNLEX_763) + +- [obsolete regional part of midbrain](http://purl.obolibrary.org/obo/UBERON_0002950) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [SCTID_119239004](http://purl.obolibrary.org/obo/SCTID_119239004) + + +### obsolete regional part of midbrain reticular formation `http://purl.obolibrary.org/obo/UBERON_0022957` +#### Removed +- [obsolete regional part of midbrain reticular formation](http://purl.obolibrary.org/obo/UBERON_0022957) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1485" + +#### Added +- [obsolete regional part of midbrain reticular formation](http://purl.obolibrary.org/obo/UBERON_0022957) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1485](http://purl.obolibrary.org/obo/BIRNLEX_1485) + + +### obsolete regional part of midbrain tectum `http://purl.obolibrary.org/obo/UBERON_0002966` +#### Removed +- [obsolete regional part of midbrain tectum](http://purl.obolibrary.org/obo/UBERON_0002966) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:795" + +- [obsolete regional part of midbrain tectum](http://purl.obolibrary.org/obo/UBERON_0002966) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:62398" + +#### Added +- [obsolete regional part of midbrain tectum](http://purl.obolibrary.org/obo/UBERON_0002966) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_62398](http://purl.obolibrary.org/obo/FMA_62398) + +- [obsolete regional part of midbrain tectum](http://purl.obolibrary.org/obo/UBERON_0002966) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_795](http://purl.obolibrary.org/obo/BIRNLEX_795) + + +### obsolete regional part of midbrain tegmentum `http://purl.obolibrary.org/obo/UBERON_0002635` +#### Removed +- [obsolete regional part of midbrain tegmentum](http://purl.obolibrary.org/obo/UBERON_0002635) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:62399" + +- [obsolete regional part of midbrain tegmentum](http://purl.obolibrary.org/obo/UBERON_0002635) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1227" + +#### Added +- [obsolete regional part of midbrain tegmentum](http://purl.obolibrary.org/obo/UBERON_0002635) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_62399](http://purl.obolibrary.org/obo/FMA_62399) + +- [obsolete regional part of midbrain tegmentum](http://purl.obolibrary.org/obo/UBERON_0002635) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1227](http://purl.obolibrary.org/obo/BIRNLEX_1227) + + +### obsolete regional part of middle ear `http://purl.obolibrary.org/obo/UBERON_0024826` +#### Removed +- [obsolete regional part of middle ear](http://purl.obolibrary.org/obo/UBERON_0024826) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1713" + +#### Added +- [obsolete regional part of middle ear](http://purl.obolibrary.org/obo/UBERON_0024826) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1713](http://purl.obolibrary.org/obo/BIRNLEX_1713) + + +### obsolete regional part of middle frontal gyrus `http://purl.obolibrary.org/obo/UBERON_0026063` +#### Removed +- [obsolete regional part of middle frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0026063) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1317" + +#### Added +- [obsolete regional part of middle frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0026063) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1317](http://purl.obolibrary.org/obo/BIRNLEX_1317) + + +### obsolete regional part of neostriatum `http://purl.obolibrary.org/obo/UBERON_0026113` +#### Removed +- [obsolete regional part of neostriatum](http://purl.obolibrary.org/obo/UBERON_0026113) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1367" + +#### Added +- [obsolete regional part of neostriatum](http://purl.obolibrary.org/obo/UBERON_0026113) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1367](http://purl.obolibrary.org/obo/BIRNLEX_1367) + + +### obsolete regional part of neuraxis cavity `http://purl.obolibrary.org/obo/UBERON_0024518` +#### Removed +- [obsolete regional part of neuraxis cavity](http://purl.obolibrary.org/obo/UBERON_0024518) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1402" + +#### Added +- [obsolete regional part of neuraxis cavity](http://purl.obolibrary.org/obo/UBERON_0024518) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1402](http://purl.obolibrary.org/obo/BIRNLEX_1402) + + +### obsolete regional part of neurohypophysis `http://purl.obolibrary.org/obo/UBERON_0025409` +#### Removed +- [obsolete regional part of neurohypophysis](http://purl.obolibrary.org/obo/UBERON_0025409) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:921" + +#### Added +- [obsolete regional part of neurohypophysis](http://purl.obolibrary.org/obo/UBERON_0025409) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_921](http://purl.obolibrary.org/obo/BIRNLEX_921) + + +### obsolete regional part of nose `http://purl.obolibrary.org/obo/UBERON_0023915` +#### Removed +- [obsolete regional part of nose](http://purl.obolibrary.org/obo/UBERON_0023915) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:100305" + +#### Added +- [obsolete regional part of nose](http://purl.obolibrary.org/obo/UBERON_0023915) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_100305](http://purl.obolibrary.org/obo/NLXANAT_100305) + + +### obsolete regional part of nucleus accumbens `http://purl.obolibrary.org/obo/UBERON_0024073` +#### Removed +- [obsolete regional part of nucleus accumbens](http://purl.obolibrary.org/obo/UBERON_0024073) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:20090305" + +#### Added +- [obsolete regional part of nucleus accumbens](http://purl.obolibrary.org/obo/UBERON_0024073) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_20090305](http://purl.obolibrary.org/obo/NLXANAT_20090305) + + +### obsolete regional part of occipital lobe `http://purl.obolibrary.org/obo/UBERON_0022660` +#### Removed +- [obsolete regional part of occipital lobe](http://purl.obolibrary.org/obo/UBERON_0022660) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1188" + +#### Added +- [obsolete regional part of occipital lobe](http://purl.obolibrary.org/obo/UBERON_0022660) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1188](http://purl.obolibrary.org/obo/BIRNLEX_1188) + + +### obsolete regional part of oculomotor nuclear complex `http://purl.obolibrary.org/obo/UBERON_0022877` +#### Removed +- [obsolete regional part of oculomotor nuclear complex](http://purl.obolibrary.org/obo/UBERON_0022877) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1405" + +#### Added +- [obsolete regional part of oculomotor nuclear complex](http://purl.obolibrary.org/obo/UBERON_0022877) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1405](http://purl.obolibrary.org/obo/BIRNLEX_1405) + + +### obsolete regional part of olfactory cortex `http://purl.obolibrary.org/obo/UBERON_0025078` +#### Removed +- [obsolete regional part of olfactory cortex](http://purl.obolibrary.org/obo/UBERON_0025078) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2708" + +#### Added +- [obsolete regional part of olfactory cortex](http://purl.obolibrary.org/obo/UBERON_0025078) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2708](http://purl.obolibrary.org/obo/BIRNLEX_2708) + + +### obsolete regional part of orbital gyri complex `http://purl.obolibrary.org/obo/UBERON_0024347` +#### Removed +- [obsolete regional part of orbital gyri complex](http://purl.obolibrary.org/obo/UBERON_0024347) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1231" + +#### Added +- [obsolete regional part of orbital gyri complex](http://purl.obolibrary.org/obo/UBERON_0024347) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1231](http://purl.obolibrary.org/obo/BIRNLEX_1231) + + +### obsolete regional part of organ cavity `http://purl.obolibrary.org/obo/UBERON_0022515` +#### Removed +- [obsolete regional part of organ cavity](http://purl.obolibrary.org/obo/UBERON_0022515) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1039" + +#### Added +- [obsolete regional part of organ cavity](http://purl.obolibrary.org/obo/UBERON_0022515) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1039](http://purl.obolibrary.org/obo/BIRNLEX_1039) + + +### obsolete regional part of outer ear `http://purl.obolibrary.org/obo/UBERON_0024721` +#### Removed +- [obsolete regional part of outer ear](http://purl.obolibrary.org/obo/UBERON_0024721) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1605" + +#### Added +- [obsolete regional part of outer ear](http://purl.obolibrary.org/obo/UBERON_0024721) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1605](http://purl.obolibrary.org/obo/BIRNLEX_1605) + + +### obsolete regional part of paraventricular nucleus of hypothalamus `http://purl.obolibrary.org/obo/UBERON_0026153` +#### Removed +- [obsolete regional part of paraventricular nucleus of hypothalamus](http://purl.obolibrary.org/obo/UBERON_0026153) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1406" + +#### Added +- [obsolete regional part of paraventricular nucleus of hypothalamus](http://purl.obolibrary.org/obo/UBERON_0026153) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1406](http://purl.obolibrary.org/obo/BIRNLEX_1406) + + +### obsolete regional part of paraventricular nucleus of hypothalamus descending division `http://purl.obolibrary.org/obo/UBERON_0027814` +#### Removed +- [obsolete regional part of paraventricular nucleus of hypothalamus descending division](http://purl.obolibrary.org/obo/UBERON_0027814) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1435" + +#### Added +- [obsolete regional part of paraventricular nucleus of hypothalamus descending division](http://purl.obolibrary.org/obo/UBERON_0027814) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1435](http://purl.obolibrary.org/obo/BIRNLEX_1435) + + +### obsolete regional part of paraventricular nucleus of hypothalamus magnocellular division `http://purl.obolibrary.org/obo/UBERON_0027758` +#### Removed +- [obsolete regional part of paraventricular nucleus of hypothalamus magnocellular division](http://purl.obolibrary.org/obo/UBERON_0027758) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1380" + +#### Added +- [obsolete regional part of paraventricular nucleus of hypothalamus magnocellular division](http://purl.obolibrary.org/obo/UBERON_0027758) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1380](http://purl.obolibrary.org/obo/BIRNLEX_1380) + + +### obsolete regional part of paraventricular nucleus of hypothalamus magnocellular division - posterior magnocellular part `http://purl.obolibrary.org/obo/UBERON_0029415` +#### Removed +- [obsolete regional part of paraventricular nucleus of hypothalamus magnocellular division - posterior magnocellular part](http://purl.obolibrary.org/obo/UBERON_0029415) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1403" + +#### Added +- [obsolete regional part of paraventricular nucleus of hypothalamus magnocellular division - posterior magnocellular part](http://purl.obolibrary.org/obo/UBERON_0029415) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1403](http://purl.obolibrary.org/obo/BIRNLEX_1403) + + +### obsolete regional part of parietal lobe `http://purl.obolibrary.org/obo/UBERON_0022650` +#### Removed +- [obsolete regional part of parietal lobe](http://purl.obolibrary.org/obo/UBERON_0022650) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1177" + +#### Added +- [obsolete regional part of parietal lobe](http://purl.obolibrary.org/obo/UBERON_0022650) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1177](http://purl.obolibrary.org/obo/BIRNLEX_1177) + + +### obsolete regional part of peripheral nervous system `http://purl.obolibrary.org/obo/UBERON_0022598` +#### Removed +- [obsolete regional part of peripheral nervous system](http://purl.obolibrary.org/obo/UBERON_0022598) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1122" + +#### Added +- [obsolete regional part of peripheral nervous system](http://purl.obolibrary.org/obo/UBERON_0022598) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1122](http://purl.obolibrary.org/obo/BIRNLEX_1122) + + +### obsolete regional part of pons `http://purl.obolibrary.org/obo/UBERON_0023636` +#### Removed +- [obsolete regional part of pons](http://purl.obolibrary.org/obo/UBERON_0023636) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:771" + +#### Added +- [obsolete regional part of pons](http://purl.obolibrary.org/obo/UBERON_0023636) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_771](http://purl.obolibrary.org/obo/BIRNLEX_771) + + +### obsolete regional part of pontine reticular formation `http://purl.obolibrary.org/obo/UBERON_0025827` +#### Removed +- [obsolete regional part of pontine reticular formation](http://purl.obolibrary.org/obo/UBERON_0025827) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1077" + +#### Added +- [obsolete regional part of pontine reticular formation](http://purl.obolibrary.org/obo/UBERON_0025827) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1077](http://purl.obolibrary.org/obo/BIRNLEX_1077) + + +### obsolete regional part of pontine tegmentum `http://purl.obolibrary.org/obo/UBERON_0024161` +#### Removed +- [obsolete regional part of pontine tegmentum](http://purl.obolibrary.org/obo/UBERON_0024161) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1041" + +#### Added +- [obsolete regional part of pontine tegmentum](http://purl.obolibrary.org/obo/UBERON_0024161) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1041](http://purl.obolibrary.org/obo/BIRNLEX_1041) + + +### obsolete regional part of posterior hypothalamic region `http://purl.obolibrary.org/obo/UBERON_0002789` +#### Removed +- [obsolete regional part of posterior hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0002789) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1697" + +- [obsolete regional part of posterior hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0002789) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:62311" + +#### Added +- [obsolete regional part of posterior hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0002789) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_62311](http://purl.obolibrary.org/obo/FMA_62311) + +- [obsolete regional part of posterior hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0002789) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1697](http://purl.obolibrary.org/obo/BIRNLEX_1697) + + +### obsolete regional part of posterior superior frontal sulcus `http://purl.obolibrary.org/obo/UBERON_0026720` +#### Removed +- [obsolete regional part of posterior superior frontal sulcus](http://purl.obolibrary.org/obo/UBERON_0026720) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:4007" + +#### Added +- [obsolete regional part of posterior superior frontal sulcus](http://purl.obolibrary.org/obo/UBERON_0026720) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_4007](http://purl.obolibrary.org/obo/BIRNLEX_4007) + + +### obsolete regional part of pretectal region `http://purl.obolibrary.org/obo/UBERON_0003047` +#### Removed +- [obsolete regional part of pretectal region](http://purl.obolibrary.org/obo/UBERON_0003047) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:993" + +- [obsolete regional part of pretectal region](http://purl.obolibrary.org/obo/UBERON_0003047) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:74519" + +#### Added +- [obsolete regional part of pretectal region](http://purl.obolibrary.org/obo/UBERON_0003047) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_74519](http://purl.obolibrary.org/obo/FMA_74519) + +- [obsolete regional part of pretectal region](http://purl.obolibrary.org/obo/UBERON_0003047) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_993](http://purl.obolibrary.org/obo/BIRNLEX_993) + + +### obsolete regional part of red nucleus `http://purl.obolibrary.org/obo/UBERON_0022890` +#### Removed +- [obsolete regional part of red nucleus](http://purl.obolibrary.org/obo/UBERON_0022890) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1418" + +#### Added +- [obsolete regional part of red nucleus](http://purl.obolibrary.org/obo/UBERON_0022890) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1418](http://purl.obolibrary.org/obo/BIRNLEX_1418) + + +### obsolete regional part of retina `http://purl.obolibrary.org/obo/UBERON_0024904` +#### Removed +- [obsolete regional part of retina](http://purl.obolibrary.org/obo/UBERON_0024904) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1793" + +#### Added +- [obsolete regional part of retina](http://purl.obolibrary.org/obo/UBERON_0024904) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1793](http://purl.obolibrary.org/obo/BIRNLEX_1793) + + +### obsolete regional part of sacral spinal cord `http://purl.obolibrary.org/obo/UBERON_0022756` +#### Removed +- [obsolete regional part of sacral spinal cord](http://purl.obolibrary.org/obo/UBERON_0022756) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1284" + +#### Added +- [obsolete regional part of sacral spinal cord](http://purl.obolibrary.org/obo/UBERON_0022756) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1284](http://purl.obolibrary.org/obo/BIRNLEX_1284) + + +### obsolete regional part of sacral spinal cord gray matter `http://purl.obolibrary.org/obo/UBERON_0027874` +#### Removed +- [obsolete regional part of sacral spinal cord gray matter](http://purl.obolibrary.org/obo/UBERON_0027874) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1495" + +#### Added +- [obsolete regional part of sacral spinal cord gray matter](http://purl.obolibrary.org/obo/UBERON_0027874) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1495](http://purl.obolibrary.org/obo/BIRNLEX_1495) + + +### obsolete regional part of sacral spinal cord white matter `http://purl.obolibrary.org/obo/UBERON_0024621` +#### Removed +- [obsolete regional part of sacral spinal cord white matter](http://purl.obolibrary.org/obo/UBERON_0024621) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1506" + +#### Added +- [obsolete regional part of sacral spinal cord white matter](http://purl.obolibrary.org/obo/UBERON_0024621) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1506](http://purl.obolibrary.org/obo/BIRNLEX_1506) + + +### obsolete regional part of septal nuclear complex `http://purl.obolibrary.org/obo/UBERON_0023687` +#### Removed +- [obsolete regional part of septal nuclear complex](http://purl.obolibrary.org/obo/UBERON_0023687) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:825" + +#### Added +- [obsolete regional part of septal nuclear complex](http://purl.obolibrary.org/obo/UBERON_0023687) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_825](http://purl.obolibrary.org/obo/BIRNLEX_825) + + +### obsolete regional part of septum `http://purl.obolibrary.org/obo/UBERON_0023163` +#### Removed +- [obsolete regional part of septum](http://purl.obolibrary.org/obo/UBERON_0023163) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1693" + +#### Added +- [obsolete regional part of septum](http://purl.obolibrary.org/obo/UBERON_0023163) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1693](http://purl.obolibrary.org/obo/BIRNLEX_1693) + + +### obsolete regional part of solitary nucleus `http://purl.obolibrary.org/obo/UBERON_0022543` +#### Removed +- [obsolete regional part of solitary nucleus](http://purl.obolibrary.org/obo/UBERON_0022543) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1068" + +#### Added +- [obsolete regional part of solitary nucleus](http://purl.obolibrary.org/obo/UBERON_0022543) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1068](http://purl.obolibrary.org/obo/BIRNLEX_1068) + + +### obsolete regional part of spinal cord dorsal horn `http://purl.obolibrary.org/obo/UBERON_0023399` +#### Removed +- [obsolete regional part of spinal cord dorsal horn](http://purl.obolibrary.org/obo/UBERON_0023399) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2671" + +#### Added +- [obsolete regional part of spinal cord dorsal horn](http://purl.obolibrary.org/obo/UBERON_0023399) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2671](http://purl.obolibrary.org/obo/BIRNLEX_2671) + + +### obsolete regional part of spinal cord gray commissure `http://purl.obolibrary.org/obo/UBERON_0023401` +#### Removed +- [obsolete regional part of spinal cord gray commissure](http://purl.obolibrary.org/obo/UBERON_0023401) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2675" + +#### Added +- [obsolete regional part of spinal cord gray commissure](http://purl.obolibrary.org/obo/UBERON_0023401) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2675](http://purl.obolibrary.org/obo/BIRNLEX_2675) + + +### obsolete regional part of spinal nerve `http://purl.obolibrary.org/obo/UBERON_0024065` +#### Removed +- [obsolete regional part of spinal nerve](http://purl.obolibrary.org/obo/UBERON_0024065) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:20090206" + +#### Added +- [obsolete regional part of spinal nerve](http://purl.obolibrary.org/obo/UBERON_0024065) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_20090206](http://purl.obolibrary.org/obo/NLXANAT_20090206) + + +### obsolete regional part of spiral organ of Corti `http://purl.obolibrary.org/obo/UBERON_0028192` +#### Removed +- [obsolete regional part of spiral organ of Corti](http://purl.obolibrary.org/obo/UBERON_0028192) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2530" + +#### Added +- [obsolete regional part of spiral organ of Corti](http://purl.obolibrary.org/obo/UBERON_0028192) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2530](http://purl.obolibrary.org/obo/BIRNLEX_2530) + + +### obsolete regional part of stratum lacunosum moleculare `http://purl.obolibrary.org/obo/UBERON_0023560` +#### Removed +- [obsolete regional part of stratum lacunosum moleculare](http://purl.obolibrary.org/obo/UBERON_0023560) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:4122" + +#### Added +- [obsolete regional part of stratum lacunosum moleculare](http://purl.obolibrary.org/obo/UBERON_0023560) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_4122](http://purl.obolibrary.org/obo/BIRNLEX_4122) + + +### obsolete regional part of stratum lucidum `http://purl.obolibrary.org/obo/UBERON_0024081` +#### Removed +- [obsolete regional part of stratum lucidum](http://purl.obolibrary.org/obo/UBERON_0024081) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:20090401" + +#### Added +- [obsolete regional part of stratum lucidum](http://purl.obolibrary.org/obo/UBERON_0024081) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_20090401](http://purl.obolibrary.org/obo/NLXANAT_20090401) + + +### obsolete regional part of stratum oriens `http://purl.obolibrary.org/obo/UBERON_0023552` +#### Removed +- [obsolete regional part of stratum oriens](http://purl.obolibrary.org/obo/UBERON_0023552) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:4114" + +#### Added +- [obsolete regional part of stratum oriens](http://purl.obolibrary.org/obo/UBERON_0023552) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_4114](http://purl.obolibrary.org/obo/BIRNLEX_4114) + + +### obsolete regional part of stratum pyramidale hippocampi `http://purl.obolibrary.org/obo/UBERON_0023547` +#### Removed +- [obsolete regional part of stratum pyramidale hippocampi](http://purl.obolibrary.org/obo/UBERON_0023547) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:4109" + +#### Added +- [obsolete regional part of stratum pyramidale hippocampi](http://purl.obolibrary.org/obo/UBERON_0023547) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_4109](http://purl.obolibrary.org/obo/BIRNLEX_4109) + + +### obsolete regional part of stratum radiatum `http://purl.obolibrary.org/obo/UBERON_0023556` +#### Removed +- [obsolete regional part of stratum radiatum](http://purl.obolibrary.org/obo/UBERON_0023556) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:4118" + +#### Added +- [obsolete regional part of stratum radiatum](http://purl.obolibrary.org/obo/UBERON_0023556) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_4118](http://purl.obolibrary.org/obo/BIRNLEX_4118) + + +### obsolete regional part of substantia nigra `http://purl.obolibrary.org/obo/UBERON_0025284` +#### Removed +- [obsolete regional part of substantia nigra](http://purl.obolibrary.org/obo/UBERON_0025284) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:775" + +#### Added +- [obsolete regional part of substantia nigra](http://purl.obolibrary.org/obo/UBERON_0025284) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_775](http://purl.obolibrary.org/obo/BIRNLEX_775) + + +### obsolete regional part of substantia nigra pars reticulata `http://purl.obolibrary.org/obo/UBERON_0028725` +#### Removed +- [obsolete regional part of substantia nigra pars reticulata](http://purl.obolibrary.org/obo/UBERON_0028725) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:978" + +#### Added +- [obsolete regional part of substantia nigra pars reticulata](http://purl.obolibrary.org/obo/UBERON_0028725) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_978](http://purl.obolibrary.org/obo/BIRNLEX_978) + + +### obsolete regional part of superior colliculus `http://purl.obolibrary.org/obo/UBERON_0002554` +#### Removed +- [obsolete regional part of superior colliculus](http://purl.obolibrary.org/obo/UBERON_0002554) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1014" + +- [obsolete regional part of superior colliculus](http://purl.obolibrary.org/obo/UBERON_0002554) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:85592" + +#### Added +- [obsolete regional part of superior colliculus](http://purl.obolibrary.org/obo/UBERON_0002554) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1014](http://purl.obolibrary.org/obo/BIRNLEX_1014) + +- [obsolete regional part of superior colliculus](http://purl.obolibrary.org/obo/UBERON_0002554) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_85592](http://purl.obolibrary.org/obo/FMA_85592) + + +### obsolete regional part of superior olivary complex `http://purl.obolibrary.org/obo/UBERON_0025828` +#### Removed +- [obsolete regional part of superior olivary complex](http://purl.obolibrary.org/obo/UBERON_0025828) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1078" + +#### Added +- [obsolete regional part of superior olivary complex](http://purl.obolibrary.org/obo/UBERON_0025828) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1078](http://purl.obolibrary.org/obo/BIRNLEX_1078) + + +### obsolete regional part of superior olive `http://purl.obolibrary.org/obo/UBERON_0027760` +#### Removed +- [obsolete regional part of superior olive](http://purl.obolibrary.org/obo/UBERON_0027760) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1382" + +#### Added +- [obsolete regional part of superior olive](http://purl.obolibrary.org/obo/UBERON_0027760) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1382](http://purl.obolibrary.org/obo/BIRNLEX_1382) + + +### obsolete regional part of superior temporal sulcus `http://purl.obolibrary.org/obo/UBERON_0026986` +#### Removed +- [obsolete regional part of superior temporal sulcus](http://purl.obolibrary.org/obo/UBERON_0026986) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:856" + +#### Added +- [obsolete regional part of superior temporal sulcus](http://purl.obolibrary.org/obo/UBERON_0026986) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_856](http://purl.obolibrary.org/obo/BIRNLEX_856) + + +### obsolete regional part of suprachiasmatic nucleus `http://purl.obolibrary.org/obo/UBERON_0026079` +#### Removed +- [obsolete regional part of suprachiasmatic nucleus](http://purl.obolibrary.org/obo/UBERON_0026079) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1333" + +#### Added +- [obsolete regional part of suprachiasmatic nucleus](http://purl.obolibrary.org/obo/UBERON_0026079) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1333](http://purl.obolibrary.org/obo/BIRNLEX_1333) + + +### obsolete regional part of supraoptic nucleus `http://purl.obolibrary.org/obo/UBERON_0027352` +#### Removed +- [obsolete regional part of supraoptic nucleus](http://purl.obolibrary.org/obo/UBERON_0027352) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:20090309" + +#### Added +- [obsolete regional part of supraoptic nucleus](http://purl.obolibrary.org/obo/UBERON_0027352) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_20090309](http://purl.obolibrary.org/obo/NLXANAT_20090309) + + +### obsolete regional part of telencephalon `http://purl.obolibrary.org/obo/UBERON_0002791` +#### Removed +- [obsolete regional part of telencephalon](http://purl.obolibrary.org/obo/UBERON_0002791) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:62374" + +- [obsolete regional part of telencephalon](http://purl.obolibrary.org/obo/UBERON_0002791) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1700" + +#### Added +- [obsolete regional part of telencephalon](http://purl.obolibrary.org/obo/UBERON_0002791) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_62374](http://purl.obolibrary.org/obo/FMA_62374) + +- [obsolete regional part of telencephalon](http://purl.obolibrary.org/obo/UBERON_0002791) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1700](http://purl.obolibrary.org/obo/BIRNLEX_1700) + + +### obsolete regional part of temporal lobe `http://purl.obolibrary.org/obo/UBERON_0023097` +#### Removed +- [obsolete regional part of temporal lobe](http://purl.obolibrary.org/obo/UBERON_0023097) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1625" + +#### Added +- [obsolete regional part of temporal lobe](http://purl.obolibrary.org/obo/UBERON_0023097) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1625](http://purl.obolibrary.org/obo/BIRNLEX_1625) + + +### obsolete regional part of thalamus `http://purl.obolibrary.org/obo/UBERON_0002730` +#### Removed +- [obsolete regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0002730) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1517" + +- [obsolete regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0002730) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "SCTID:119406000" + +- [obsolete regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0002730) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:67705" + +#### Added +- [obsolete regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0002730) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_67705](http://purl.obolibrary.org/obo/FMA_67705) + +- [obsolete regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0002730) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [SCTID_119406000](http://purl.obolibrary.org/obo/SCTID_119406000) + +- [obsolete regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0002730) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1517](http://purl.obolibrary.org/obo/BIRNLEX_1517) + + +### obsolete regional part of thalamus `http://purl.obolibrary.org/obo/UBERON_0022988` +#### Removed +- [obsolete regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0022988) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1517" + +#### Added +- [obsolete regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0022988) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1517](http://purl.obolibrary.org/obo/BIRNLEX_1517) + + +### obsolete regional part of thoracic spinal cord `http://purl.obolibrary.org/obo/UBERON_0023812` +#### Removed +- [obsolete regional part of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0023812) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:972" + +#### Added +- [obsolete regional part of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0023812) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_972](http://purl.obolibrary.org/obo/BIRNLEX_972) + + +### obsolete regional part of thoracic spinal cord dorsal horn `http://purl.obolibrary.org/obo/UBERON_0027796` +#### Removed +- [obsolete regional part of thoracic spinal cord dorsal horn](http://purl.obolibrary.org/obo/UBERON_0027796) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1417" + +#### Added +- [obsolete regional part of thoracic spinal cord dorsal horn](http://purl.obolibrary.org/obo/UBERON_0027796) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1417](http://purl.obolibrary.org/obo/BIRNLEX_1417) + + +### obsolete regional part of thoracic spinal cord gray matter `http://purl.obolibrary.org/obo/UBERON_0025473` +#### Removed +- [obsolete regional part of thoracic spinal cord gray matter](http://purl.obolibrary.org/obo/UBERON_0025473) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:989" + +#### Added +- [obsolete regional part of thoracic spinal cord gray matter](http://purl.obolibrary.org/obo/UBERON_0025473) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_989](http://purl.obolibrary.org/obo/BIRNLEX_989) + + +### obsolete regional part of thoracic spinal cord white matter `http://purl.obolibrary.org/obo/UBERON_0027007` +#### Removed +- [obsolete regional part of thoracic spinal cord white matter](http://purl.obolibrary.org/obo/UBERON_0027007) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:885" + +#### Added +- [obsolete regional part of thoracic spinal cord white matter](http://purl.obolibrary.org/obo/UBERON_0027007) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_885](http://purl.obolibrary.org/obo/BIRNLEX_885) + + +### obsolete regional part of tongue `http://purl.obolibrary.org/obo/UBERON_0023536` +#### Removed +- [obsolete regional part of tongue](http://purl.obolibrary.org/obo/UBERON_0023536) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:4098" + +#### Added +- [obsolete regional part of tongue](http://purl.obolibrary.org/obo/UBERON_0023536) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_4098](http://purl.obolibrary.org/obo/BIRNLEX_4098) + + +### obsolete regional part of transverse frontopolar gyri complex `http://purl.obolibrary.org/obo/UBERON_0024381` +#### Removed +- [obsolete regional part of transverse frontopolar gyri complex](http://purl.obolibrary.org/obo/UBERON_0024381) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1265" + +#### Added +- [obsolete regional part of transverse frontopolar gyri complex](http://purl.obolibrary.org/obo/UBERON_0024381) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1265](http://purl.obolibrary.org/obo/BIRNLEX_1265) + + +### obsolete regional part of transverse temporal cortex `http://purl.obolibrary.org/obo/UBERON_0026324` +#### Removed +- [obsolete regional part of transverse temporal cortex](http://purl.obolibrary.org/obo/UBERON_0026324) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1578" + +#### Added +- [obsolete regional part of transverse temporal cortex](http://purl.obolibrary.org/obo/UBERON_0026324) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1578](http://purl.obolibrary.org/obo/BIRNLEX_1578) + + +### obsolete regional part of trapezoid nuclear complex `http://purl.obolibrary.org/obo/UBERON_0029861` +#### Removed +- [obsolete regional part of trapezoid nuclear complex](http://purl.obolibrary.org/obo/UBERON_0029861) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2574" + +#### Added +- [obsolete regional part of trapezoid nuclear complex](http://purl.obolibrary.org/obo/UBERON_0029861) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2574](http://purl.obolibrary.org/obo/BIRNLEX_2574) + + +### obsolete regional part of tuberomammillary nucleus `http://purl.obolibrary.org/obo/UBERON_0024397` +#### Removed +- [obsolete regional part of tuberomammillary nucleus](http://purl.obolibrary.org/obo/UBERON_0024397) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1281" + +#### Added +- [obsolete regional part of tuberomammillary nucleus](http://purl.obolibrary.org/obo/UBERON_0024397) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1281](http://purl.obolibrary.org/obo/BIRNLEX_1281) + + +### obsolete regional part of ventral cochlear nucleus `http://purl.obolibrary.org/obo/UBERON_0023317` +#### Removed +- [obsolete regional part of ventral cochlear nucleus](http://purl.obolibrary.org/obo/UBERON_0023317) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2570" + +#### Added +- [obsolete regional part of ventral cochlear nucleus](http://purl.obolibrary.org/obo/UBERON_0023317) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2570](http://purl.obolibrary.org/obo/BIRNLEX_2570) + + +### obsolete regional part of vestibular ganglion `http://purl.obolibrary.org/obo/UBERON_0028205` +#### Removed +- [obsolete regional part of vestibular ganglion](http://purl.obolibrary.org/obo/UBERON_0028205) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2550" + +#### Added +- [obsolete regional part of vestibular ganglion](http://purl.obolibrary.org/obo/UBERON_0028205) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2550](http://purl.obolibrary.org/obo/BIRNLEX_2550) + + +### obsolete regional part of vestibular nuclear complex `http://purl.obolibrary.org/obo/UBERON_0002584` +#### Removed +- [obsolete regional part of vestibular nuclear complex](http://purl.obolibrary.org/obo/UBERON_0002584) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:71267" + +- [obsolete regional part of vestibular nuclear complex](http://purl.obolibrary.org/obo/UBERON_0002584) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1080" + +#### Added +- [obsolete regional part of vestibular nuclear complex](http://purl.obolibrary.org/obo/UBERON_0002584) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_71267](http://purl.obolibrary.org/obo/FMA_71267) + +- [obsolete regional part of vestibular nuclear complex](http://purl.obolibrary.org/obo/UBERON_0002584) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1080](http://purl.obolibrary.org/obo/BIRNLEX_1080) + + +### obsolete regional part orbital frontal cortex `http://purl.obolibrary.org/obo/UBERON_0024177` +#### Removed +- [obsolete regional part orbital frontal cortex](http://purl.obolibrary.org/obo/UBERON_0024177) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1058" + +#### Added +- [obsolete regional part orbital frontal cortex](http://purl.obolibrary.org/obo/UBERON_0024177) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1058](http://purl.obolibrary.org/obo/BIRNLEX_1058) + + +### obsolete replacement ossification `http://purl.obolibrary.org/obo/UBERON_4000140` +#### Removed +- [obsolete replacement ossification](http://purl.obolibrary.org/obo/UBERON_4000140) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "GO:0036075" + +#### Added +- [obsolete replacement ossification](http://purl.obolibrary.org/obo/UBERON_4000140) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [GO_0036075](http://purl.obolibrary.org/obo/GO_0036075) + + +### obsolete reproductive gland `http://purl.obolibrary.org/obo/UBERON_0005300` +#### Removed +- [obsolete reproductive gland](http://purl.obolibrary.org/obo/UBERON_0005300) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0003937" + +#### Added +- [obsolete reproductive gland](http://purl.obolibrary.org/obo/UBERON_0005300) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [reproductive gland](http://purl.obolibrary.org/obo/UBERON_0003937) + + +### obsolete retrorubral area `http://purl.obolibrary.org/obo/UBERON_0006122` +#### Removed +- [obsolete retrorubral area](http://purl.obolibrary.org/obo/UBERON_0006122) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:20090301" + +- [obsolete retrorubral area](http://purl.obolibrary.org/obo/UBERON_0006122) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:66581" + +#### Added +- [obsolete retrorubral area](http://purl.obolibrary.org/obo/UBERON_0006122) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_66581](http://purl.obolibrary.org/obo/FMA_66581) + +- [obsolete retrorubral area](http://purl.obolibrary.org/obo/UBERON_0006122) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_20090301](http://purl.obolibrary.org/obo/NLXANAT_20090301) + + +### obsolete rexed lamina xi `http://purl.obolibrary.org/obo/UBERON_0016593` +#### Removed +- [obsolete rexed lamina xi](http://purl.obolibrary.org/obo/UBERON_0016593) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:68872" + +#### Added +- [obsolete rexed lamina xi](http://purl.obolibrary.org/obo/UBERON_0016593) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_68872](http://purl.obolibrary.org/obo/FMA_68872) + + +### obsolete rexed lamina xii `http://purl.obolibrary.org/obo/UBERON_0016594` +#### Removed +- [obsolete rexed lamina xii](http://purl.obolibrary.org/obo/UBERON_0016594) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:68873" + +#### Added +- [obsolete rexed lamina xii](http://purl.obolibrary.org/obo/UBERON_0016594) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_68873](http://purl.obolibrary.org/obo/FMA_68873) + + +### obsolete rhinencephalon `http://purl.obolibrary.org/obo/UBERON_0008981` +#### Removed +- [obsolete rhinencephalon](http://purl.obolibrary.org/obo/UBERON_0008981) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BTO:0002785" + +- [obsolete rhinencephalon](http://purl.obolibrary.org/obo/UBERON_0008981) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "SCTID:361576004" + +#### Added +- [obsolete rhinencephalon](http://purl.obolibrary.org/obo/UBERON_0008981) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [SCTID_361576004](http://purl.obolibrary.org/obo/SCTID_361576004) + +- [obsolete rhinencephalon](http://purl.obolibrary.org/obo/UBERON_0008981) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BTO_0002785](http://purl.obolibrary.org/obo/BTO_0002785) + + +### obsolete right side of organism `http://purl.obolibrary.org/obo/UBERON_0004532` +#### Removed +- [obsolete right side of organism](http://purl.obolibrary.org/obo/UBERON_0004532) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BSPO:0000007" + +#### Added +- [obsolete right side of organism](http://purl.obolibrary.org/obo/UBERON_0004532) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BSPO_0000007](http://purl.obolibrary.org/obo/BSPO_0000007) + + +### obsolete rootlet `http://purl.obolibrary.org/obo/UBERON_0000364` +#### Removed +- [obsolete rootlet](http://purl.obolibrary.org/obo/UBERON_0000364) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:76787" + +#### Added +- [obsolete rootlet](http://purl.obolibrary.org/obo/UBERON_0000364) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_76787](http://purl.obolibrary.org/obo/FMA_76787) + + +### obsolete round ligament `http://purl.obolibrary.org/obo/UBERON_0010504` +#### Removed +- [obsolete round ligament](http://purl.obolibrary.org/obo/UBERON_0010504) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NCIT:C12319" + +- [obsolete round ligament](http://purl.obolibrary.org/obo/UBERON_0010504) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0006588" + +- [obsolete round ligament](http://purl.obolibrary.org/obo/UBERON_0010504) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0006589" + +#### Added +- [obsolete round ligament](http://purl.obolibrary.org/obo/UBERON_0010504) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NCIT_C12319](http://purl.obolibrary.org/obo/NCIT_C12319) + +- [obsolete round ligament](http://purl.obolibrary.org/obo/UBERON_0010504) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [round ligament of liver](http://purl.obolibrary.org/obo/UBERON_0006588) + +- [obsolete round ligament](http://purl.obolibrary.org/obo/UBERON_0010504) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [round ligament of uterus](http://purl.obolibrary.org/obo/UBERON_0006589) + + +### obsolete scapular area `http://purl.obolibrary.org/obo/UBERON_3000935` +#### Removed +- [obsolete scapular area](http://purl.obolibrary.org/obo/UBERON_3000935) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0006849" + +#### Added +- [obsolete scapular area](http://purl.obolibrary.org/obo/UBERON_3000935) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [scapula](http://purl.obolibrary.org/obo/UBERON_0006849) + + +### obsolete sclera `http://purl.obolibrary.org/obo/UBERON_2002289` +#### Removed +- [obsolete sclera](http://purl.obolibrary.org/obo/UBERON_2002289) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0001773" + +#### Added +- [obsolete sclera](http://purl.obolibrary.org/obo/UBERON_2002289) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [sclera](http://purl.obolibrary.org/obo/UBERON_0001773) + + +### obsolete sclerite `http://purl.obolibrary.org/obo/UBERON_0003148` +#### Removed +- [obsolete sclerite](http://purl.obolibrary.org/obo/UBERON_0003148) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000909" + +- [obsolete sclerite](http://purl.obolibrary.org/obo/UBERON_0003148) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004475" + +#### Added +- [obsolete sclerite](http://purl.obolibrary.org/obo/UBERON_0003148) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004475](http://purl.obolibrary.org/obo/FBbt_00004475) + +- [obsolete sclerite](http://purl.obolibrary.org/obo/UBERON_0003148) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000909](http://purl.obolibrary.org/obo/HAO_0000909) + + +### obsolete scutoscutellar suture `http://purl.obolibrary.org/obo/UBERON_0003181` +#### Removed +- [obsolete scutoscutellar suture](http://purl.obolibrary.org/obo/UBERON_0003181) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004601" + +- [obsolete scutoscutellar suture](http://purl.obolibrary.org/obo/UBERON_0003181) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000920" + +#### Added +- [obsolete scutoscutellar suture](http://purl.obolibrary.org/obo/UBERON_0003181) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004601](http://purl.obolibrary.org/obo/FBbt_00004601) + +- [obsolete scutoscutellar suture](http://purl.obolibrary.org/obo/UBERON_0003181) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000920](http://purl.obolibrary.org/obo/HAO_0000920) + + +### obsolete second polar body `http://purl.obolibrary.org/obo/UBERON_0005474` +#### Removed +- [obsolete second polar body](http://purl.obolibrary.org/obo/UBERON_0005474) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EHDAA2:0001820" + +- [obsolete second polar body](http://purl.obolibrary.org/obo/UBERON_0005474) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:18651" + +#### Added +- [obsolete second polar body](http://purl.obolibrary.org/obo/UBERON_0005474) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EHDAA2_0001820](http://purl.obolibrary.org/obo/EHDAA2_0001820) + +- [obsolete second polar body](http://purl.obolibrary.org/obo/UBERON_0005474) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_18651](http://purl.obolibrary.org/obo/FMA_18651) + + +### obsolete secondary oogonium `http://purl.obolibrary.org/obo/UBERON_3010299` +#### Removed +- [obsolete secondary oogonium](http://purl.obolibrary.org/obo/UBERON_3010299) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000655" + +#### Added +- [obsolete secondary oogonium](http://purl.obolibrary.org/obo/UBERON_3010299) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000655](http://purl.obolibrary.org/obo/CL_0000655) + + +### obsolete secondary spermatogonium `http://purl.obolibrary.org/obo/UBERON_3010300` +#### Removed +- [obsolete secondary spermatogonium](http://purl.obolibrary.org/obo/UBERON_3010300) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000657" + +#### Added +- [obsolete secondary spermatogonium](http://purl.obolibrary.org/obo/UBERON_3010300) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000657](http://purl.obolibrary.org/obo/CL_0000657) + + +### obsolete segment of white matter of spinal cord `http://purl.obolibrary.org/obo/UBERON_0006080` +#### Removed +- [obsolete segment of white matter of spinal cord](http://purl.obolibrary.org/obo/UBERON_0006080) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:258174" + +#### Added +- [obsolete segment of white matter of spinal cord](http://purl.obolibrary.org/obo/UBERON_0006080) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_258174](http://purl.obolibrary.org/obo/FMA_258174) + + +### obsolete sensory receptors `http://purl.obolibrary.org/obo/UBERON_3010612` +#### Removed +- [obsolete sensory receptors](http://purl.obolibrary.org/obo/UBERON_3010612) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0012451" + +#### Added +- [obsolete sensory receptors](http://purl.obolibrary.org/obo/UBERON_3010612) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [sensory receptor](http://purl.obolibrary.org/obo/UBERON_0012451) + + +### obsolete sesamoid `http://purl.obolibrary.org/obo/UBERON_3010629` +#### Removed +- [obsolete sesamoid](http://purl.obolibrary.org/obo/UBERON_3010629) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0001479" + +#### Added +- [obsolete sesamoid](http://purl.obolibrary.org/obo/UBERON_3010629) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [sesamoid bone](http://purl.obolibrary.org/obo/UBERON_0001479) + + +### obsolete set of arachnoid trabecula `http://purl.obolibrary.org/obo/UBERON_0000438` +#### Removed +- [obsolete set of arachnoid trabecula](http://purl.obolibrary.org/obo/UBERON_0000438) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:77761" + +#### Added +- [obsolete set of arachnoid trabecula](http://purl.obolibrary.org/obo/UBERON_0000438) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_77761](http://purl.obolibrary.org/obo/FMA_77761) + + +### obsolete set of proper plantar digital arteries `http://purl.obolibrary.org/obo/UBERON_0004551` +#### Removed +- [obsolete set of proper plantar digital arteries](http://purl.obolibrary.org/obo/UBERON_0004551) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:71564" + +#### Added +- [obsolete set of proper plantar digital arteries](http://purl.obolibrary.org/obo/UBERON_0004551) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_71564](http://purl.obolibrary.org/obo/FMA_71564) + + +### obsolete seta `http://purl.obolibrary.org/obo/UBERON_0010888` +#### Removed +- [obsolete seta](http://purl.obolibrary.org/obo/UBERON_0010888) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BTO:0004212" + +- [obsolete seta](http://purl.obolibrary.org/obo/UBERON_0010888) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "INSECT:0000114" + +- [obsolete seta](http://purl.obolibrary.org/obo/UBERON_0010888) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MIAA:0000152" + +#### Added +- [obsolete seta](http://purl.obolibrary.org/obo/UBERON_0010888) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MIAA_0000152](http://purl.obolibrary.org/obo/MIAA_0000152) + +- [obsolete seta](http://purl.obolibrary.org/obo/UBERON_0010888) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [INSECT_0000114](http://purl.obolibrary.org/obo/INSECT_0000114) + +- [obsolete seta](http://purl.obolibrary.org/obo/UBERON_0010888) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BTO_0004212](http://purl.obolibrary.org/obo/BTO_0004212) + + +### obsolete simian fossa (macaque) `http://purl.obolibrary.org/obo/UBERON_0022431` +#### Removed +- [obsolete simian fossa (macaque)](http://purl.obolibrary.org/obo/UBERON_0022431) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1616" + +- [obsolete simian fossa (macaque)](http://purl.obolibrary.org/obo/UBERON_0022431) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UMLS:C0694579" + +- [obsolete simian fossa (macaque)](http://purl.obolibrary.org/obo/UBERON_0022431) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "neuronames:46" + +#### Added +- [obsolete simian fossa (macaque)](http://purl.obolibrary.org/obo/UBERON_0022431) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [UMLS_C0694579](http://purl.obolibrary.org/obo/UMLS_C0694579) + +- [obsolete simian fossa (macaque)](http://purl.obolibrary.org/obo/UBERON_0022431) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1616](http://purl.obolibrary.org/obo/BIRNLEX_1616) + +- [obsolete simian fossa (macaque)](http://purl.obolibrary.org/obo/UBERON_0022431) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [neuronames_46](http://purl.obolibrary.org/obo/neuronames_46) + + +### obsolete skeletal muscle of mesenchyme `http://purl.obolibrary.org/obo/UBERON_0003385` +#### Removed +- [obsolete skeletal muscle of mesenchyme](http://purl.obolibrary.org/obo/UBERON_0003385) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EMAPA:19144" + +- [obsolete skeletal muscle of mesenchyme](http://purl.obolibrary.org/obo/UBERON_0003385) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EMAPA:19107" + +#### Added +- [obsolete skeletal muscle of mesenchyme](http://purl.obolibrary.org/obo/UBERON_0003385) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EMAPA_19107](http://purl.obolibrary.org/obo/EMAPA_19107) + +- [obsolete skeletal muscle of mesenchyme](http://purl.obolibrary.org/obo/UBERON_0003385) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EMAPA_19144](http://purl.obolibrary.org/obo/EMAPA_19144) + + +### obsolete skeletal muscle tissue of tongue `http://purl.obolibrary.org/obo/UBERON_0003273` +#### Removed +- [obsolete skeletal muscle tissue of tongue](http://purl.obolibrary.org/obo/UBERON_0003273) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0000378" + +#### Added +- [obsolete skeletal muscle tissue of tongue](http://purl.obolibrary.org/obo/UBERON_0003273) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [tongue muscle](http://purl.obolibrary.org/obo/UBERON_0000378) + + +### obsolete skeletogenic cell `http://purl.obolibrary.org/obo/UBERON_4000012` +#### Removed +- [obsolete skeletogenic cell](http://purl.obolibrary.org/obo/UBERON_4000012) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0007001" + +#### Added +- [obsolete skeletogenic cell](http://purl.obolibrary.org/obo/UBERON_4000012) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0007001](http://purl.obolibrary.org/obo/CL_0007001) + + +### obsolete skeleton of embryo `http://purl.obolibrary.org/obo/UBERON_0003276` +#### Removed +- [obsolete skeleton of embryo](http://purl.obolibrary.org/obo/UBERON_0003276) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0004288" + +#### Added +- [obsolete skeleton of embryo](http://purl.obolibrary.org/obo/UBERON_0003276) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [skeleton](http://purl.obolibrary.org/obo/UBERON_0004288) + + +### obsolete somite border `http://purl.obolibrary.org/obo/UBERON_2001462` +#### Removed +- [obsolete somite border](http://purl.obolibrary.org/obo/UBERON_2001462) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0015178" + +#### Added +- [obsolete somite border](http://purl.obolibrary.org/obo/UBERON_2001462) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [somite border](http://purl.obolibrary.org/obo/UBERON_0015178) + + +### obsolete somitomere `http://purl.obolibrary.org/obo/UBERON_0005727` +#### Removed +- [obsolete somitomere](http://purl.obolibrary.org/obo/UBERON_0005727) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0009617" + +#### Added +- [obsolete somitomere](http://purl.obolibrary.org/obo/UBERON_0005727) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [head paraxial mesoderm](http://purl.obolibrary.org/obo/UBERON_0009617) + + +### obsolete spermatid `http://purl.obolibrary.org/obo/UBERON_3010301` +#### Removed +- [obsolete spermatid](http://purl.obolibrary.org/obo/UBERON_3010301) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000018" + +#### Added +- [obsolete spermatid](http://purl.obolibrary.org/obo/UBERON_3010301) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000018](http://purl.obolibrary.org/obo/CL_0000018) + + +### obsolete spermatocyte `http://purl.obolibrary.org/obo/UBERON_3010256` +#### Removed +- [obsolete spermatocyte](http://purl.obolibrary.org/obo/UBERON_3010256) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000017" + +#### Added +- [obsolete spermatocyte](http://purl.obolibrary.org/obo/UBERON_3010256) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000017](http://purl.obolibrary.org/obo/CL_0000017) + + +### obsolete spermatogonia `http://purl.obolibrary.org/obo/UBERON_2001337` +#### Removed +- [obsolete spermatogonia](http://purl.obolibrary.org/obo/UBERON_2001337) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000020" + +#### Added +- [obsolete spermatogonia](http://purl.obolibrary.org/obo/UBERON_2001337) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000020](http://purl.obolibrary.org/obo/CL_0000020) + + +### obsolete spermatozoon `http://purl.obolibrary.org/obo/UBERON_3010295` +#### Removed +- [obsolete spermatozoon](http://purl.obolibrary.org/obo/UBERON_3010295) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000019" + +#### Added +- [obsolete spermatozoon](http://purl.obolibrary.org/obo/UBERON_3010295) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000019](http://purl.obolibrary.org/obo/CL_0000019) + + +### obsolete spinal cord neural fold `http://purl.obolibrary.org/obo/UBERON_0005266` +#### Removed +- [obsolete spinal cord neural fold](http://purl.obolibrary.org/obo/UBERON_0005266) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "VHOG:0000628" + +#### Added +- [obsolete spinal cord neural fold](http://purl.obolibrary.org/obo/UBERON_0005266) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [VHOG_0000628](http://purl.obolibrary.org/obo/VHOG_0000628) + + +### obsolete spinal cord reticular formation `http://purl.obolibrary.org/obo/UBERON_0018534` +#### Removed +- [obsolete spinal cord reticular formation](http://purl.obolibrary.org/obo/UBERON_0018534) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:77455" + +- [obsolete spinal cord reticular formation](http://purl.obolibrary.org/obo/UBERON_0018534) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "SCTID:369268003" + +#### Added +- [obsolete spinal cord reticular formation](http://purl.obolibrary.org/obo/UBERON_0018534) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_77455](http://purl.obolibrary.org/obo/FMA_77455) + +- [obsolete spinal cord reticular formation](http://purl.obolibrary.org/obo/UBERON_0018534) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [SCTID_369268003](http://purl.obolibrary.org/obo/SCTID_369268003) + + +### obsolete spiracle `http://purl.obolibrary.org/obo/UBERON_0001006` +#### Removed +- [obsolete spiracle](http://purl.obolibrary.org/obo/UBERON_0001006) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "TGMA:0000578" + +- [obsolete spiracle](http://purl.obolibrary.org/obo/UBERON_0001006) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00005054" + +- [obsolete spiracle](http://purl.obolibrary.org/obo/UBERON_0001006) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000950" + +- [obsolete spiracle](http://purl.obolibrary.org/obo/UBERON_0001006) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0010019" + +#### Added +- [obsolete spiracle](http://purl.obolibrary.org/obo/UBERON_0001006) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000950](http://purl.obolibrary.org/obo/HAO_0000950) + +- [obsolete spiracle](http://purl.obolibrary.org/obo/UBERON_0001006) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00005054](http://purl.obolibrary.org/obo/FBbt_00005054) + +- [obsolete spiracle](http://purl.obolibrary.org/obo/UBERON_0001006) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [TGMA_0000578](http://purl.obolibrary.org/obo/TGMA_0000578) + +- [obsolete spiracle](http://purl.obolibrary.org/obo/UBERON_0001006) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [spiracle (sensu Vertebrata)](http://purl.obolibrary.org/obo/UBERON_0010019) + + +### obsolete splenius musculature `http://purl.obolibrary.org/obo/UBERON_0004484` +#### Removed +- [obsolete splenius musculature](http://purl.obolibrary.org/obo/UBERON_0004484) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:22596" + +#### Added +- [obsolete splenius musculature](http://purl.obolibrary.org/obo/UBERON_0004484) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_22596](http://purl.obolibrary.org/obo/FMA_22596) + + +### obsolete stem cell `http://purl.obolibrary.org/obo/UBERON_3010322` +#### Removed +- [obsolete stem cell](http://purl.obolibrary.org/obo/UBERON_3010322) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000034" + +#### Added +- [obsolete stem cell](http://purl.obolibrary.org/obo/UBERON_3010322) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000034](http://purl.obolibrary.org/obo/CL_0000034) + + +### obsolete sternite `http://purl.obolibrary.org/obo/UBERON_0003150` +#### Removed +- [obsolete sternite](http://purl.obolibrary.org/obo/UBERON_0003150) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000955" + +- [obsolete sternite](http://purl.obolibrary.org/obo/UBERON_0003150) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004477" + +#### Added +- [obsolete sternite](http://purl.obolibrary.org/obo/UBERON_0003150) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000955](http://purl.obolibrary.org/obo/HAO_0000955) + +- [obsolete sternite](http://purl.obolibrary.org/obo/UBERON_0003150) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004477](http://purl.obolibrary.org/obo/FBbt_00004477) + + +### obsolete sternohyoid `http://purl.obolibrary.org/obo/UBERON_2000283` +#### Removed +- [obsolete sternohyoid](http://purl.obolibrary.org/obo/UBERON_2000283) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0001107" + +#### Added +- [obsolete sternohyoid](http://purl.obolibrary.org/obo/UBERON_2000283) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [sternohyoid muscle](http://purl.obolibrary.org/obo/UBERON_0001107) + + +### obsolete striosomal part of tail of caudate nucleus `http://purl.obolibrary.org/obo/UBERON_0027247` +#### Removed +- [obsolete striosomal part of tail of caudate nucleus](http://purl.obolibrary.org/obo/UBERON_0027247) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:1010007" + +#### Added +- [obsolete striosomal part of tail of caudate nucleus](http://purl.obolibrary.org/obo/UBERON_0027247) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_1010007](http://purl.obolibrary.org/obo/NLXANAT_1010007) + + +### obsolete subparabrachial nucleus `http://purl.obolibrary.org/obo/UBERON_0016849` +#### Removed +- [obsolete subparabrachial nucleus](http://purl.obolibrary.org/obo/UBERON_0016849) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0002869" + +#### Added +- [obsolete subparabrachial nucleus](http://purl.obolibrary.org/obo/UBERON_0016849) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [diffuse reticular nucleus](http://purl.obolibrary.org/obo/UBERON_0002869) + + +### obsolete superficial blastomere `http://purl.obolibrary.org/obo/UBERON_2001484` +#### Removed +- [obsolete superficial blastomere](http://purl.obolibrary.org/obo/UBERON_2001484) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "ZFA:0001484" + +#### Added +- [obsolete superficial blastomere](http://purl.obolibrary.org/obo/UBERON_2001484) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [ZFA_0001484](http://purl.obolibrary.org/obo/ZFA_0001484) + + +### obsolete superficial feature part of cerebral cortex `http://purl.obolibrary.org/obo/UBERON_0024182` +#### Removed +- [obsolete superficial feature part of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0024182) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1063" + +#### Added +- [obsolete superficial feature part of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0024182) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1063](http://purl.obolibrary.org/obo/BIRNLEX_1063) + + +### obsolete superficial feature part of cerebral peduncle `http://purl.obolibrary.org/obo/UBERON_0026106` +#### Removed +- [obsolete superficial feature part of cerebral peduncle](http://purl.obolibrary.org/obo/UBERON_0026106) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1360" + +#### Added +- [obsolete superficial feature part of cerebral peduncle](http://purl.obolibrary.org/obo/UBERON_0026106) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1360](http://purl.obolibrary.org/obo/BIRNLEX_1360) + + +### obsolete superficial feature part of diencephalon `http://purl.obolibrary.org/obo/UBERON_0022822` +#### Removed +- [obsolete superficial feature part of diencephalon](http://purl.obolibrary.org/obo/UBERON_0022822) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1351" + +#### Added +- [obsolete superficial feature part of diencephalon](http://purl.obolibrary.org/obo/UBERON_0022822) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1351](http://purl.obolibrary.org/obo/BIRNLEX_1351) + + +### obsolete superficial feature part of frontal lobe `http://purl.obolibrary.org/obo/UBERON_0024439` +#### Removed +- [obsolete superficial feature part of frontal lobe](http://purl.obolibrary.org/obo/UBERON_0024439) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1324" + +#### Added +- [obsolete superficial feature part of frontal lobe](http://purl.obolibrary.org/obo/UBERON_0024439) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1324](http://purl.obolibrary.org/obo/BIRNLEX_1324) + + +### obsolete superficial feature part of hypophysis `http://purl.obolibrary.org/obo/UBERON_0024708` +#### Removed +- [obsolete superficial feature part of hypophysis](http://purl.obolibrary.org/obo/UBERON_0024708) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1593" + +#### Added +- [obsolete superficial feature part of hypophysis](http://purl.obolibrary.org/obo/UBERON_0024708) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1593](http://purl.obolibrary.org/obo/BIRNLEX_1593) + + +### obsolete superficial feature part of intermediate hypothalamic region `http://purl.obolibrary.org/obo/UBERON_0022761` +#### Removed +- [obsolete superficial feature part of intermediate hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0022761) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1289" + +#### Added +- [obsolete superficial feature part of intermediate hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0022761) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1289](http://purl.obolibrary.org/obo/BIRNLEX_1289) + + +### obsolete superficial feature part of medulla oblongata `http://purl.obolibrary.org/obo/UBERON_0022997` +#### Removed +- [obsolete superficial feature part of medulla oblongata](http://purl.obolibrary.org/obo/UBERON_0022997) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1526" + +#### Added +- [obsolete superficial feature part of medulla oblongata](http://purl.obolibrary.org/obo/UBERON_0022997) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1526](http://purl.obolibrary.org/obo/BIRNLEX_1526) + + +### obsolete superficial feature part of midbrain tectum `http://purl.obolibrary.org/obo/UBERON_0022732` +#### Removed +- [obsolete superficial feature part of midbrain tectum](http://purl.obolibrary.org/obo/UBERON_0022732) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1260" + +#### Added +- [obsolete superficial feature part of midbrain tectum](http://purl.obolibrary.org/obo/UBERON_0022732) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1260](http://purl.obolibrary.org/obo/BIRNLEX_1260) + + +### obsolete superficial feature part of parietal cortex `http://purl.obolibrary.org/obo/UBERON_0025116` +#### Removed +- [obsolete superficial feature part of parietal cortex](http://purl.obolibrary.org/obo/UBERON_0025116) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:4034" + +#### Added +- [obsolete superficial feature part of parietal cortex](http://purl.obolibrary.org/obo/UBERON_0025116) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_4034](http://purl.obolibrary.org/obo/BIRNLEX_4034) + + +### obsolete superficial feature part of pons `http://purl.obolibrary.org/obo/UBERON_0022740` +#### Removed +- [obsolete superficial feature part of pons](http://purl.obolibrary.org/obo/UBERON_0022740) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1268" + +#### Added +- [obsolete superficial feature part of pons](http://purl.obolibrary.org/obo/UBERON_0022740) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1268](http://purl.obolibrary.org/obo/BIRNLEX_1268) + + +### obsolete superficial feature part of posterior hypothalamic region `http://purl.obolibrary.org/obo/UBERON_0023013` +#### Removed +- [obsolete superficial feature part of posterior hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0023013) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1542" + +#### Added +- [obsolete superficial feature part of posterior hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0023013) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1542](http://purl.obolibrary.org/obo/BIRNLEX_1542) + + +### obsolete superficial feature part of telencephalon `http://purl.obolibrary.org/obo/UBERON_0023695` +#### Removed +- [obsolete superficial feature part of telencephalon](http://purl.obolibrary.org/obo/UBERON_0023695) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:833" + +#### Added +- [obsolete superficial feature part of telencephalon](http://purl.obolibrary.org/obo/UBERON_0023695) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_833](http://purl.obolibrary.org/obo/BIRNLEX_833) + + +### obsolete superficial feature part of temporal lobe `http://purl.obolibrary.org/obo/UBERON_0024653` +#### Removed +- [obsolete superficial feature part of temporal lobe](http://purl.obolibrary.org/obo/UBERON_0024653) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1538" + +#### Added +- [obsolete superficial feature part of temporal lobe](http://purl.obolibrary.org/obo/UBERON_0024653) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1538](http://purl.obolibrary.org/obo/BIRNLEX_1538) + + +### obsolete supporting cell `http://purl.obolibrary.org/obo/UBERON_3010160` +#### Removed +- [obsolete supporting cell](http://purl.obolibrary.org/obo/UBERON_3010160) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000853" + +#### Added +- [obsolete supporting cell](http://purl.obolibrary.org/obo/UBERON_3010160) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000853](http://purl.obolibrary.org/obo/CL_0000853) + + +### obsolete supporting connective tissue `http://purl.obolibrary.org/obo/UBERON_0006809` +#### Removed +- [obsolete supporting connective tissue](http://purl.obolibrary.org/obo/UBERON_0006809) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "AAO:0000571" + +- [obsolete supporting connective tissue](http://purl.obolibrary.org/obo/UBERON_0006809) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:37374" + +#### Added +- [obsolete supporting connective tissue](http://purl.obolibrary.org/obo/UBERON_0006809) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [AAO_0000571](http://purl.obolibrary.org/obo/AAO_0000571) + +- [obsolete supporting connective tissue](http://purl.obolibrary.org/obo/UBERON_0006809) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_37374](http://purl.obolibrary.org/obo/FMA_37374) + + +### obsolete supra-acetabular expansion `http://purl.obolibrary.org/obo/UBERON_3000868` +#### Removed +- [obsolete supra-acetabular expansion](http://purl.obolibrary.org/obo/UBERON_3000868) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:4200125" + +#### Added +- [obsolete supra-acetabular expansion](http://purl.obolibrary.org/obo/UBERON_3000868) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [supraacetabular crest](http://purl.obolibrary.org/obo/UBERON_4200125) + + +### obsolete supraangular `http://purl.obolibrary.org/obo/UBERON_3000587` +#### Removed +- [obsolete supraangular](http://purl.obolibrary.org/obo/UBERON_3000587) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0011636" + +#### Added +- [obsolete supraangular](http://purl.obolibrary.org/obo/UBERON_3000587) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [surangular bone](http://purl.obolibrary.org/obo/UBERON_0011636) + + +### obsolete supracoracoid nerve foramen `http://purl.obolibrary.org/obo/UBERON_0018363` +#### Removed +- [obsolete supracoracoid nerve foramen](http://purl.obolibrary.org/obo/UBERON_0018363) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:3000778" + +#### Added +- [obsolete supracoracoid nerve foramen](http://purl.obolibrary.org/obo/UBERON_0018363) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [supracoracoid foramen](http://purl.obolibrary.org/obo/UBERON_3000778) + + +### obsolete supraoccipital `http://purl.obolibrary.org/obo/UBERON_3000588` +#### Removed +- [obsolete supraoccipital](http://purl.obolibrary.org/obo/UBERON_3000588) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0004747" + +#### Added +- [obsolete supraoccipital](http://purl.obolibrary.org/obo/UBERON_3000588) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [supraoccipital bone](http://purl.obolibrary.org/obo/UBERON_0004747) + + +### obsolete surface sense organ `http://purl.obolibrary.org/obo/UBERON_0007540` +#### Removed +- [obsolete surface sense organ](http://purl.obolibrary.org/obo/UBERON_0007540) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EHDAA2:0003173" + +- [obsolete surface sense organ](http://purl.obolibrary.org/obo/UBERON_0007540) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "AEO:0000173" + +#### Added +- [obsolete surface sense organ](http://purl.obolibrary.org/obo/UBERON_0007540) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EHDAA2_0003173](http://purl.obolibrary.org/obo/EHDAA2_0003173) + +- [obsolete surface sense organ](http://purl.obolibrary.org/obo/UBERON_0007540) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [AEO_0000173](http://purl.obolibrary.org/obo/AEO_0000173) + + +### obsolete synapse `http://purl.obolibrary.org/obo/UBERON_0035344` +#### Removed +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0035344) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:67408" + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0035344) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UMLS:C0039062" + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0035344) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "SCTID:362298009" + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0035344) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NCIT:C13281" + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0035344) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "GO:0045202" + +#### Added +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0035344) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [SCTID_362298009](http://purl.obolibrary.org/obo/SCTID_362298009) + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0035344) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [GO_0045202](http://purl.obolibrary.org/obo/GO_0045202) + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0035344) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [UMLS_C0039062](http://purl.obolibrary.org/obo/UMLS_C0039062) + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0035344) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NCIT_C13281](http://purl.obolibrary.org/obo/NCIT_C13281) + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0035344) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_67408](http://purl.obolibrary.org/obo/FMA_67408) + + +### obsolete synapse `http://purl.obolibrary.org/obo/UBERON_0001025` +#### Removed +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0001025) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GAID:766" + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0001025) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GO:0045202" + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0001025) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NIF_Subcellular:sao914572699" + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0001025) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "SCTID:362298009" + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0001025) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NCIT:C13281" + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0001025) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:67408" + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0001025) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UMLS:C0039062" + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0001025) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MESH:A08.850" + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0001025) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00005114" + +#### Added +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0001025) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [SCTID_362298009](http://purl.obolibrary.org/obo/SCTID_362298009) + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0001025) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MESH_A08.850](http://purl.obolibrary.org/obo/MESH_A08.850) + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0001025) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00005114](http://purl.obolibrary.org/obo/FBbt_00005114) + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0001025) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [UMLS_C0039062](http://purl.obolibrary.org/obo/UMLS_C0039062) + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0001025) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_67408](http://purl.obolibrary.org/obo/FMA_67408) + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0001025) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NIF_Subcellular_sao914572699](http://purl.obolibrary.org/obo/NIF_Subcellular_sao914572699) + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0001025) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GAID_766](http://purl.obolibrary.org/obo/GAID_766) + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0001025) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GO_0045202](http://purl.obolibrary.org/obo/GO_0045202) + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0001025) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NCIT_C13281](http://purl.obolibrary.org/obo/NCIT_C13281) + + +### obsolete synaptic ribbon `http://purl.obolibrary.org/obo/UBERON_0001030` +#### Removed +- [obsolete synaptic ribbon](http://purl.obolibrary.org/obo/UBERON_0001030) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:67107" + +- [obsolete synaptic ribbon](http://purl.obolibrary.org/obo/UBERON_0001030) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NIF_Subcellular:sao1884931180" + +- [obsolete synaptic ribbon](http://purl.obolibrary.org/obo/UBERON_0001030) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GO:0048788" + +- [obsolete synaptic ribbon](http://purl.obolibrary.org/obo/UBERON_0001030) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00005143" + +#### Added +- [obsolete synaptic ribbon](http://purl.obolibrary.org/obo/UBERON_0001030) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00005143](http://purl.obolibrary.org/obo/FBbt_00005143) + +- [obsolete synaptic ribbon](http://purl.obolibrary.org/obo/UBERON_0001030) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_67107](http://purl.obolibrary.org/obo/FMA_67107) + +- [obsolete synaptic ribbon](http://purl.obolibrary.org/obo/UBERON_0001030) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NIF_Subcellular_sao1884931180](http://purl.obolibrary.org/obo/NIF_Subcellular_sao1884931180) + +- [obsolete synaptic ribbon](http://purl.obolibrary.org/obo/UBERON_0001030) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GO_0048788](http://purl.obolibrary.org/obo/GO_0048788) + + +### obsolete tagma `http://purl.obolibrary.org/obo/UBERON_0003136` +#### Removed +- [obsolete tagma](http://purl.obolibrary.org/obo/UBERON_0003136) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00000002" + +- [obsolete tagma](http://purl.obolibrary.org/obo/UBERON_0003136) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000988" + +#### Added +- [obsolete tagma](http://purl.obolibrary.org/obo/UBERON_0003136) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000988](http://purl.obolibrary.org/obo/HAO_0000988) + +- [obsolete tagma](http://purl.obolibrary.org/obo/UBERON_0003136) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00000002](http://purl.obolibrary.org/obo/FBbt_00000002) + + +### obsolete tailbud stage `http://purl.obolibrary.org/obo/UBERON_0009741` +#### Removed +- [obsolete tailbud stage](http://purl.obolibrary.org/obo/UBERON_0009741) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "XAO:1000007" + +#### Added +- [obsolete tailbud stage](http://purl.obolibrary.org/obo/UBERON_0009741) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [XAO_1000007](http://purl.obolibrary.org/obo/XAO_1000007) + + +### obsolete tegula `http://purl.obolibrary.org/obo/UBERON_0003191` +#### Removed +- [obsolete tegula](http://purl.obolibrary.org/obo/UBERON_0003191) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000993" + +- [obsolete tegula](http://purl.obolibrary.org/obo/UBERON_0003191) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004730" + +#### Added +- [obsolete tegula](http://purl.obolibrary.org/obo/UBERON_0003191) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004730](http://purl.obolibrary.org/obo/FBbt_00004730) + +- [obsolete tegula](http://purl.obolibrary.org/obo/UBERON_0003191) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000993](http://purl.obolibrary.org/obo/HAO_0000993) + + +### obsolete telencephalic tracts `http://purl.obolibrary.org/obo/UBERON_2000597` +#### Removed +- [obsolete telencephalic tracts](http://purl.obolibrary.org/obo/UBERON_2000597) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0011299" + +#### Added +- [obsolete telencephalic tracts](http://purl.obolibrary.org/obo/UBERON_2000597) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [white matter of telencephalon](http://purl.obolibrary.org/obo/UBERON_0011299) + + +### obsolete telencephalon lateral ventricle `http://purl.obolibrary.org/obo/UBERON_0005683` +#### Removed +- [obsolete telencephalon lateral ventricle](http://purl.obolibrary.org/obo/UBERON_0005683) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EHDAA2:0001984" + +#### Added +- [obsolete telencephalon lateral ventricle](http://purl.obolibrary.org/obo/UBERON_0005683) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EHDAA2_0001984](http://purl.obolibrary.org/obo/EHDAA2_0001984) + + +### obsolete telencephalon of primate `http://purl.obolibrary.org/obo/UBERON_0023935` +#### Removed +- [obsolete telencephalon of primate](http://purl.obolibrary.org/obo/UBERON_0023935) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:1005012" + +#### Added +- [obsolete telencephalon of primate](http://purl.obolibrary.org/obo/UBERON_0023935) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_1005012](http://purl.obolibrary.org/obo/NLXANAT_1005012) + + +### obsolete telencephalon of rodent `http://purl.obolibrary.org/obo/UBERON_0023938` +#### Removed +- [obsolete telencephalon of rodent](http://purl.obolibrary.org/obo/UBERON_0023938) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0001893" + +- [obsolete telencephalon of rodent](http://purl.obolibrary.org/obo/UBERON_0023938) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:1005015" + +#### Added +- [obsolete telencephalon of rodent](http://purl.obolibrary.org/obo/UBERON_0023938) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [telencephalon](http://purl.obolibrary.org/obo/UBERON_0001893) + +- [obsolete telencephalon of rodent](http://purl.obolibrary.org/obo/UBERON_0023938) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_1005015](http://purl.obolibrary.org/obo/NLXANAT_1005015) + + +### obsolete tentorial pit `http://purl.obolibrary.org/obo/UBERON_0003158` +#### Removed +- [obsolete tentorial pit](http://purl.obolibrary.org/obo/UBERON_0003158) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004501" + +- [obsolete tentorial pit](http://purl.obolibrary.org/obo/UBERON_0003158) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000999" + +#### Added +- [obsolete tentorial pit](http://purl.obolibrary.org/obo/UBERON_0003158) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000999](http://purl.obolibrary.org/obo/HAO_0000999) + +- [obsolete tentorial pit](http://purl.obolibrary.org/obo/UBERON_0003158) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004501](http://purl.obolibrary.org/obo/FBbt_00004501) + + +### obsolete tergite `http://purl.obolibrary.org/obo/UBERON_0003149` +#### Removed +- [obsolete tergite](http://purl.obolibrary.org/obo/UBERON_0003149) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0001005" + +- [obsolete tergite](http://purl.obolibrary.org/obo/UBERON_0003149) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004476" + +#### Added +- [obsolete tergite](http://purl.obolibrary.org/obo/UBERON_0003149) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0001005](http://purl.obolibrary.org/obo/HAO_0001005) + +- [obsolete tergite](http://purl.obolibrary.org/obo/UBERON_0003149) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004476](http://purl.obolibrary.org/obo/FBbt_00004476) + + +### obsolete tergum `http://purl.obolibrary.org/obo/UBERON_0003170` +#### Removed +- [obsolete tergum](http://purl.obolibrary.org/obo/UBERON_0003170) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0001006" + +- [obsolete tergum](http://purl.obolibrary.org/obo/UBERON_0003170) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004552" + +#### Added +- [obsolete tergum](http://purl.obolibrary.org/obo/UBERON_0003170) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004552](http://purl.obolibrary.org/obo/FBbt_00004552) + +- [obsolete tergum](http://purl.obolibrary.org/obo/UBERON_0003170) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0001006](http://purl.obolibrary.org/obo/HAO_0001006) + + +### obsolete terminally differentiated odontoblast `http://purl.obolibrary.org/obo/UBERON_4000096` +#### Removed +- [obsolete terminally differentiated odontoblast](http://purl.obolibrary.org/obo/UBERON_4000096) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:00007013" + +#### Added +- [obsolete terminally differentiated odontoblast](http://purl.obolibrary.org/obo/UBERON_4000096) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_00007013](http://purl.obolibrary.org/obo/CL_00007013) + + +### obsolete terminally differentiated osteoblast `http://purl.obolibrary.org/obo/UBERON_4000116` +#### Removed +- [obsolete terminally differentiated osteoblast](http://purl.obolibrary.org/obo/UBERON_4000116) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0001039" + +#### Added +- [obsolete terminally differentiated osteoblast](http://purl.obolibrary.org/obo/UBERON_4000116) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0001039](http://purl.obolibrary.org/obo/CL_0001039) + + +### obsolete thoracic segment `http://purl.obolibrary.org/obo/UBERON_0003138` +#### Removed +- [obsolete thoracic segment](http://purl.obolibrary.org/obo/UBERON_0003138) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0001013" + +- [obsolete thoracic segment](http://purl.obolibrary.org/obo/UBERON_0003138) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00000016" + +#### Added +- [obsolete thoracic segment](http://purl.obolibrary.org/obo/UBERON_0003138) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00000016](http://purl.obolibrary.org/obo/FBbt_00000016) + +- [obsolete thoracic segment](http://purl.obolibrary.org/obo/UBERON_0003138) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0001013](http://purl.obolibrary.org/obo/HAO_0001013) + + +### obsolete thymocyte `http://purl.obolibrary.org/obo/UBERON_3010312` +#### Removed +- [obsolete thymocyte](http://purl.obolibrary.org/obo/UBERON_3010312) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000893" + +#### Added +- [obsolete thymocyte](http://purl.obolibrary.org/obo/UBERON_3010312) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000893](http://purl.obolibrary.org/obo/CL_0000893) + + +### obsolete thymus subunit `http://purl.obolibrary.org/obo/UBERON_0035075` +#### Removed +- [obsolete thymus subunit](http://purl.obolibrary.org/obo/UBERON_0035075) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0005483" + +#### Added +- [obsolete thymus subunit](http://purl.obolibrary.org/obo/UBERON_0035075) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [thymus lobe](http://purl.obolibrary.org/obo/UBERON_0005483) + + +### obsolete tip of digit `http://purl.obolibrary.org/obo/UBERON_7500041` +#### Removed +- [obsolete tip of digit](http://purl.obolibrary.org/obo/UBERON_7500041) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0009551" + +#### Added +- [obsolete tip of digit](http://purl.obolibrary.org/obo/UBERON_7500041) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [distal segment of digit](http://purl.obolibrary.org/obo/UBERON_0009551) + + +### obsolete tip of nail `http://purl.obolibrary.org/obo/UBERON_7500040` +#### Removed +- [obsolete tip of nail](http://purl.obolibrary.org/obo/UBERON_7500040) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0001705" + +#### Added +- [obsolete tip of nail](http://purl.obolibrary.org/obo/UBERON_7500040) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [nail](http://purl.obolibrary.org/obo/UBERON_0001705) + + +### obsolete tip of tail `http://purl.obolibrary.org/obo/UBERON_7500035` +#### Removed +- [obsolete tip of tail](http://purl.obolibrary.org/obo/UBERON_7500035) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0010162" + +#### Added +- [obsolete tip of tail](http://purl.obolibrary.org/obo/UBERON_7500035) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [post-anal tail tip](http://purl.obolibrary.org/obo/UBERON_0010162) + + +### obsolete tongue musculature `http://purl.obolibrary.org/obo/UBERON_0004477` +#### Removed +- [obsolete tongue musculature](http://purl.obolibrary.org/obo/UBERON_0004477) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:71289" + +#### Added +- [obsolete tongue musculature](http://purl.obolibrary.org/obo/UBERON_0004477) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_71289](http://purl.obolibrary.org/obo/FMA_71289) + + +### obsolete tonsillar lymph node `http://purl.obolibrary.org/obo/UBERON_0015919` +#### Removed +- [obsolete tonsillar lymph node](http://purl.obolibrary.org/obo/UBERON_0015919) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "SCTID:261419004" + +#### Added +- [obsolete tonsillar lymph node](http://purl.obolibrary.org/obo/UBERON_0015919) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [SCTID_261419004](http://purl.obolibrary.org/obo/SCTID_261419004) + + +### obsolete trabecular plate `http://purl.obolibrary.org/obo/UBERON_3010137` +#### Removed +- [obsolete trabecular plate](http://purl.obolibrary.org/obo/UBERON_3010137) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0011242" + +#### Added +- [obsolete trabecular plate](http://purl.obolibrary.org/obo/UBERON_3010137) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [ethmoid cartilage](http://purl.obolibrary.org/obo/UBERON_0011242) + + +### obsolete transitional epithelium `http://purl.obolibrary.org/obo/UBERON_0005910` +#### Removed +- [obsolete transitional epithelium](http://purl.obolibrary.org/obo/UBERON_0005910) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0000365" + +#### Added +- [obsolete transitional epithelium](http://purl.obolibrary.org/obo/UBERON_0005910) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [urothelium](http://purl.obolibrary.org/obo/UBERON_0000365) + + +### obsolete trochlea of femur `http://purl.obolibrary.org/obo/UBERON_7500077` +#### Removed +- [obsolete trochlea of femur](http://purl.obolibrary.org/obo/UBERON_7500077) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:4200096" + +#### Added +- [obsolete trochlea of femur](http://purl.obolibrary.org/obo/UBERON_7500077) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [intercondylar fossa](http://purl.obolibrary.org/obo/UBERON_4200096) + + +### obsolete tuber `http://purl.obolibrary.org/obo/UBERON_4200132` +#### Removed +- [obsolete tuber](http://purl.obolibrary.org/obo/UBERON_4200132) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0005813" + +#### Added +- [obsolete tuber](http://purl.obolibrary.org/obo/UBERON_4200132) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [tubercle](http://purl.obolibrary.org/obo/UBERON_0005813) + + +### obsolete tuber `http://purl.obolibrary.org/obo/UBERON_0000380` +#### Removed +- [obsolete tuber](http://purl.obolibrary.org/obo/UBERON_0000380) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:75430" + +- [obsolete tuber](http://purl.obolibrary.org/obo/UBERON_0000380) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EFO:0001015" + +#### Added +- [obsolete tuber](http://purl.obolibrary.org/obo/UBERON_0000380) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EFO_0001015](http://purl.obolibrary.org/obo/EFO_0001015) + +- [obsolete tuber](http://purl.obolibrary.org/obo/UBERON_0000380) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_75430](http://purl.obolibrary.org/obo/FMA_75430) + + +### obsolete tunica vasculosa plexus `http://purl.obolibrary.org/obo/UBERON_0012184` +#### Removed +- [obsolete tunica vasculosa plexus](http://purl.obolibrary.org/obo/UBERON_0012184) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NCIT:C33823" + +- [obsolete tunica vasculosa plexus](http://purl.obolibrary.org/obo/UBERON_0012184) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MA:0001284" + +#### Added +- [obsolete tunica vasculosa plexus](http://purl.obolibrary.org/obo/UBERON_0012184) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MA_0001284](http://purl.obolibrary.org/obo/MA_0001284) + +- [obsolete tunica vasculosa plexus](http://purl.obolibrary.org/obo/UBERON_0012184) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NCIT_C33823](http://purl.obolibrary.org/obo/NCIT_C33823) + + +### obsolete tympanum `http://purl.obolibrary.org/obo/UBERON_3011108` +#### Removed +- [obsolete tympanum](http://purl.obolibrary.org/obo/UBERON_3011108) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0002364" + +#### Added +- [obsolete tympanum](http://purl.obolibrary.org/obo/UBERON_3011108) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [tympanic membrane](http://purl.obolibrary.org/obo/UBERON_0002364) + + +### obsolete unfertilized egg `http://purl.obolibrary.org/obo/UBERON_2001570` +#### Removed +- [obsolete unfertilized egg](http://purl.obolibrary.org/obo/UBERON_2001570) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000025" + +#### Added +- [obsolete unfertilized egg](http://purl.obolibrary.org/obo/UBERON_2001570) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000025](http://purl.obolibrary.org/obo/CL_0000025) + + +### obsolete unguitractor plate `http://purl.obolibrary.org/obo/UBERON_0003189` +#### Removed +- [obsolete unguitractor plate](http://purl.obolibrary.org/obo/UBERON_0003189) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004658" + +- [obsolete unguitractor plate](http://purl.obolibrary.org/obo/UBERON_0003189) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0001043" + +#### Added +- [obsolete unguitractor plate](http://purl.obolibrary.org/obo/UBERON_0003189) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004658](http://purl.obolibrary.org/obo/FBbt_00004658) + +- [obsolete unguitractor plate](http://purl.obolibrary.org/obo/UBERON_0003189) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0001043](http://purl.obolibrary.org/obo/HAO_0001043) + + +### obsolete unspecified `http://purl.obolibrary.org/obo/UBERON_0006336` +#### Removed +- [obsolete unspecified](http://purl.obolibrary.org/obo/UBERON_0006336) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "XAO:0003003" + +- [obsolete unspecified](http://purl.obolibrary.org/obo/UBERON_0006336) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "ZFA:0001093" + +#### Added +- [obsolete unspecified](http://purl.obolibrary.org/obo/UBERON_0006336) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [XAO_0003003](http://purl.obolibrary.org/obo/XAO_0003003) + +- [obsolete unspecified](http://purl.obolibrary.org/obo/UBERON_0006336) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ZFA_0001093](http://purl.obolibrary.org/obo/ZFA_0001093) + + +### obsolete ureter `http://purl.obolibrary.org/obo/UBERON_0001055` +#### Removed +- [obsolete ureter](http://purl.obolibrary.org/obo/UBERON_0001055) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0000056" + +- [obsolete ureter](http://purl.obolibrary.org/obo/UBERON_0001055) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0000057" + +#### Added +- [obsolete ureter](http://purl.obolibrary.org/obo/UBERON_0001055) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ureter](http://purl.obolibrary.org/obo/UBERON_0000056) + +- [obsolete ureter](http://purl.obolibrary.org/obo/UBERON_0001055) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [urethra](http://purl.obolibrary.org/obo/UBERON_0000057) + + +### obsolete urethra of urogenital sinus `http://purl.obolibrary.org/obo/UBERON_0003340` +#### Removed +- [obsolete urethra of urogenital sinus](http://purl.obolibrary.org/obo/UBERON_0003340) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EMAPA:30901" + +#### Added +- [obsolete urethra of urogenital sinus](http://purl.obolibrary.org/obo/UBERON_0003340) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EMAPA_30901](http://purl.obolibrary.org/obo/EMAPA_30901) + + +### obsolete vagal ganglion `http://purl.obolibrary.org/obo/UBERON_2007067` +#### Removed +- [obsolete vagal ganglion](http://purl.obolibrary.org/obo/UBERON_2007067) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0005362" + +#### Added +- [obsolete vagal ganglion](http://purl.obolibrary.org/obo/UBERON_2007067) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [vagus X ganglion](http://purl.obolibrary.org/obo/UBERON_0005362) + + +### obsolete vagal root `http://purl.obolibrary.org/obo/UBERON_2007011` +#### Removed +- [obsolete vagal root](http://purl.obolibrary.org/obo/UBERON_2007011) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0011213" + +#### Added +- [obsolete vagal root](http://purl.obolibrary.org/obo/UBERON_2007011) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [root of vagus nerve](http://purl.obolibrary.org/obo/UBERON_0011213) + + +### obsolete vegetal hemisphere `http://purl.obolibrary.org/obo/UBERON_3010331` +#### Removed +- [obsolete vegetal hemisphere](http://purl.obolibrary.org/obo/UBERON_3010331) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0012285" + +#### Added +- [obsolete vegetal hemisphere](http://purl.obolibrary.org/obo/UBERON_3010331) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [vegetal hemisphere](http://purl.obolibrary.org/obo/UBERON_0012285) + + +### obsolete ventral hyoid arch `http://purl.obolibrary.org/obo/UBERON_4000018` +#### Removed +- [obsolete ventral hyoid arch](http://purl.obolibrary.org/obo/UBERON_4000018) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0011153" + +#### Added +- [obsolete ventral hyoid arch](http://purl.obolibrary.org/obo/UBERON_4000018) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [ventral hyoid arch skeleton](http://purl.obolibrary.org/obo/UBERON_0011153) + + +### obsolete ventral labial vein `http://purl.obolibrary.org/obo/UBERON_0006202` +#### Removed +- [obsolete ventral labial vein](http://purl.obolibrary.org/obo/UBERON_0006202) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MA:0002260" + +#### Added +- [obsolete ventral labial vein](http://purl.obolibrary.org/obo/UBERON_0006202) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MA_0002260](http://purl.obolibrary.org/obo/MA_0002260) + + +### obsolete ventral longitudinal muscle `http://purl.obolibrary.org/obo/UBERON_0000932` +#### Removed +- [obsolete ventral longitudinal muscle](http://purl.obolibrary.org/obo/UBERON_0000932) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "WBbt:0005814" + +- [obsolete ventral longitudinal muscle](http://purl.obolibrary.org/obo/UBERON_0000932) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00000482" + +#### Added +- [obsolete ventral longitudinal muscle](http://purl.obolibrary.org/obo/UBERON_0000932) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00000482](http://purl.obolibrary.org/obo/FBbt_00000482) + +- [obsolete ventral longitudinal muscle](http://purl.obolibrary.org/obo/UBERON_0000932) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [WBbt_0005814](http://purl.obolibrary.org/obo/WBbt_0005814) + + +### obsolete ventral nucleus `http://purl.obolibrary.org/obo/UBERON_2000302` +#### Removed +- [obsolete ventral nucleus](http://purl.obolibrary.org/obo/UBERON_2000302) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "ZFA:0000302" + +- [obsolete ventral nucleus](http://purl.obolibrary.org/obo/UBERON_2000302) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0008993" + +#### Added +- [obsolete ventral nucleus](http://purl.obolibrary.org/obo/UBERON_2000302) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ZFA_0000302](http://purl.obolibrary.org/obo/ZFA_0000302) + +- [obsolete ventral nucleus](http://purl.obolibrary.org/obo/UBERON_2000302) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [habenular nucleus](http://purl.obolibrary.org/obo/UBERON_0008993) + + +### obsolete ventral ramus of occulomotor nerve `http://purl.obolibrary.org/obo/UBERON_3010632` +#### Removed +- [obsolete ventral ramus of occulomotor nerve](http://purl.obolibrary.org/obo/UBERON_3010632) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0015161" + +#### Added +- [obsolete ventral ramus of occulomotor nerve](http://purl.obolibrary.org/obo/UBERON_3010632) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [inferior branch of oculomotor nerve](http://purl.obolibrary.org/obo/UBERON_0015161) + + +### obsolete ventricle `http://purl.obolibrary.org/obo/UBERON_0002300` +#### Removed +- [obsolete ventricle](http://purl.obolibrary.org/obo/UBERON_0002300) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:82553" + +#### Added +- [obsolete ventricle](http://purl.obolibrary.org/obo/UBERON_0002300) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_82553](http://purl.obolibrary.org/obo/FMA_82553) + + +### obsolete vertebral `http://purl.obolibrary.org/obo/UBERON_3010224` +#### Removed +- [obsolete vertebral](http://purl.obolibrary.org/obo/UBERON_3010224) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0010913" + +#### Added +- [obsolete vertebral](http://purl.obolibrary.org/obo/UBERON_3010224) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [vertebral element](http://purl.obolibrary.org/obo/UBERON_0010913) + + +### obsolete visceral muscle `http://purl.obolibrary.org/obo/UBERON_6005070` +#### Removed +- [obsolete visceral muscle](http://purl.obolibrary.org/obo/UBERON_6005070) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00005070" + +- [obsolete visceral muscle](http://purl.obolibrary.org/obo/UBERON_6005070) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "CL:0008007" + +#### Added +- [obsolete visceral muscle](http://purl.obolibrary.org/obo/UBERON_6005070) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [CL_0008007](http://purl.obolibrary.org/obo/CL_0008007) + +- [obsolete visceral muscle](http://purl.obolibrary.org/obo/UBERON_6005070) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00005070](http://purl.obolibrary.org/obo/FBbt_00005070) + + +### obsolete visceral musculature `http://purl.obolibrary.org/obo/UBERON_0007094` +#### Removed +- [obsolete visceral musculature](http://purl.obolibrary.org/obo/UBERON_0007094) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BILA:0000132" + +- [obsolete visceral musculature](http://purl.obolibrary.org/obo/UBERON_0007094) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0001135" + +#### Added +- [obsolete visceral musculature](http://purl.obolibrary.org/obo/UBERON_0007094) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [smooth muscle tissue](http://purl.obolibrary.org/obo/UBERON_0001135) + +- [obsolete visceral musculature](http://purl.obolibrary.org/obo/UBERON_0007094) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BILA_0000132](http://purl.obolibrary.org/obo/BILA_0000132) + + +### obsolete viscerocranium `http://purl.obolibrary.org/obo/UBERON_0001704` +#### Removed +- [obsolete viscerocranium](http://purl.obolibrary.org/obo/UBERON_0001704) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0011156" + +- [obsolete viscerocranium](http://purl.obolibrary.org/obo/UBERON_0001704) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0008895" + +#### Added +- [obsolete viscerocranium](http://purl.obolibrary.org/obo/UBERON_0001704) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [splanchnocranium](http://purl.obolibrary.org/obo/UBERON_0008895) + +- [obsolete viscerocranium](http://purl.obolibrary.org/obo/UBERON_0001704) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [facial skeleton](http://purl.obolibrary.org/obo/UBERON_0011156) + + +### obsolete vitelline venous plexus `http://purl.obolibrary.org/obo/UBERON_0006310` +#### Removed +- [obsolete vitelline venous plexus](http://purl.obolibrary.org/obo/UBERON_0006310) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0006309" + +#### Added +- [obsolete vitelline venous plexus](http://purl.obolibrary.org/obo/UBERON_0006310) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [venous vitelline plexus](http://purl.obolibrary.org/obo/UBERON_0006309) + + +### obsolete vitreous `http://purl.obolibrary.org/obo/UBERON_2002290` +#### Removed +- [obsolete vitreous](http://purl.obolibrary.org/obo/UBERON_2002290) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0001797" + +#### Added +- [obsolete vitreous](http://purl.obolibrary.org/obo/UBERON_2002290) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [vitreous humor](http://purl.obolibrary.org/obo/UBERON_0001797) + + +### obsolete wing cell `http://purl.obolibrary.org/obo/UBERON_0003196` +#### Removed +- [obsolete wing cell](http://purl.obolibrary.org/obo/UBERON_0003196) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004769" + +- [obsolete wing cell](http://purl.obolibrary.org/obo/UBERON_0003196) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0001091" + +#### Added +- [obsolete wing cell](http://purl.obolibrary.org/obo/UBERON_0003196) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0001091](http://purl.obolibrary.org/obo/HAO_0001091) + +- [obsolete wing cell](http://purl.obolibrary.org/obo/UBERON_0003196) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004769](http://purl.obolibrary.org/obo/FBbt_00004769) + + +### obsolete xanthophore `http://purl.obolibrary.org/obo/UBERON_3010320` +#### Removed +- [obsolete xanthophore](http://purl.obolibrary.org/obo/UBERON_3010320) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000430" + +#### Added +- [obsolete xanthophore](http://purl.obolibrary.org/obo/UBERON_3010320) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000430](http://purl.obolibrary.org/obo/CL_0000430) + + +### obsolete yolk `http://purl.obolibrary.org/obo/UBERON_0000918` +#### Removed +- [obsolete yolk](http://purl.obolibrary.org/obo/UBERON_0000918) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00000035" + +- [obsolete yolk](http://purl.obolibrary.org/obo/UBERON_0000918) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "XAO:0000281" + +- [obsolete yolk](http://purl.obolibrary.org/obo/UBERON_0000918) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0007378" + +- [obsolete yolk](http://purl.obolibrary.org/obo/UBERON_0000918) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "ZFA:0000084" + +- [obsolete yolk](http://purl.obolibrary.org/obo/UBERON_0000918) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BTO:0000371" + +- [obsolete yolk](http://purl.obolibrary.org/obo/UBERON_0000918) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GO:0060417" + +#### Added +- [obsolete yolk](http://purl.obolibrary.org/obo/UBERON_0000918) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BTO_0000371](http://purl.obolibrary.org/obo/BTO_0000371) + +- [obsolete yolk](http://purl.obolibrary.org/obo/UBERON_0000918) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [XAO_0000281](http://purl.obolibrary.org/obo/XAO_0000281) + +- [obsolete yolk](http://purl.obolibrary.org/obo/UBERON_0000918) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00000035](http://purl.obolibrary.org/obo/FBbt_00000035) + +- [obsolete yolk](http://purl.obolibrary.org/obo/UBERON_0000918) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [egg yolk](http://purl.obolibrary.org/obo/UBERON_0007378) + +- [obsolete yolk](http://purl.obolibrary.org/obo/UBERON_0000918) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GO_0060417](http://purl.obolibrary.org/obo/GO_0060417) + +- [obsolete yolk](http://purl.obolibrary.org/obo/UBERON_0000918) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ZFA_0000084](http://purl.obolibrary.org/obo/ZFA_0000084) + + +### obsolete zygote `http://purl.obolibrary.org/obo/UBERON_3010324` +#### Removed +- [obsolete zygote](http://purl.obolibrary.org/obo/UBERON_3010324) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000365" + +#### Added +- [obsolete zygote](http://purl.obolibrary.org/obo/UBERON_3010324) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000365](http://purl.obolibrary.org/obo/CL_0000365) + + +### obsolete zygote cortex `http://purl.obolibrary.org/obo/UBERON_0005889` +#### Removed +- [obsolete zygote cortex](http://purl.obolibrary.org/obo/UBERON_0005889) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "AAO:0010327" + +#### Added +- [obsolete zygote cortex](http://purl.obolibrary.org/obo/UBERON_0005889) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [AAO_0010327](http://purl.obolibrary.org/obo/AAO_0010327) + + +### occipital fusiform gyrus `http://purl.obolibrary.org/obo/UBERON_0022364` +#### Removed +- [occipital fusiform gyrus](http://purl.obolibrary.org/obo/UBERON_0022364) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [occipital fusiform gyrus](http://purl.obolibrary.org/obo/UBERON_0022364) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [occipital fusiform gyrus](http://purl.obolibrary.org/obo/UBERON_0022364) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [occipital fusiform gyrus](http://purl.obolibrary.org/obo/UBERON_0022364) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [occipital fusiform gyrus](http://purl.obolibrary.org/obo/UBERON_0022364) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [occipital fusiform gyrus](http://purl.obolibrary.org/obo/UBERON_0022364) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [occipital fusiform gyrus](http://purl.obolibrary.org/obo/UBERON_0022364) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [occipital fusiform gyrus](http://purl.obolibrary.org/obo/UBERON_0022364) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### occipital pole `http://purl.obolibrary.org/obo/UBERON_0002902` +#### Removed +- [occipital pole](http://purl.obolibrary.org/obo/UBERON_0002902) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [occipital pole](http://purl.obolibrary.org/obo/UBERON_0002902) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [occipital pole](http://purl.obolibrary.org/obo/UBERON_0002902) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [occipital pole](http://purl.obolibrary.org/obo/UBERON_0002902) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [occipital pole](http://purl.obolibrary.org/obo/UBERON_0002902) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [occipital pole](http://purl.obolibrary.org/obo/UBERON_0002902) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [occipital pole](http://purl.obolibrary.org/obo/UBERON_0002902) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [occipital pole](http://purl.obolibrary.org/obo/UBERON_0002902) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### olfactory bulb `http://purl.obolibrary.org/obo/UBERON_0002264` +#### Removed +- [olfactory bulb](http://purl.obolibrary.org/obo/UBERON_0002264) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [olfactory bulb](http://purl.obolibrary.org/obo/UBERON_0002264) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [olfactory bulb](http://purl.obolibrary.org/obo/UBERON_0002264) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [olfactory bulb](http://purl.obolibrary.org/obo/UBERON_0002264) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [olfactory bulb](http://purl.obolibrary.org/obo/UBERON_0002264) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [olfactory bulb](http://purl.obolibrary.org/obo/UBERON_0002264) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [olfactory bulb](http://purl.obolibrary.org/obo/UBERON_0002264) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.0/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [olfactory bulb](http://purl.obolibrary.org/obo/UBERON_0002264) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [olfactory bulb](http://purl.obolibrary.org/obo/UBERON_0002264) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [olfactory bulb](http://purl.obolibrary.org/obo/UBERON_0002264) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.0/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### opercular part of inferior frontal gyrus `http://purl.obolibrary.org/obo/UBERON_0002980` +#### Removed +- [opercular part of inferior frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0002980) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [opercular part of inferior frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0002980) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [opercular part of inferior frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0002980) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [opercular part of inferior frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0002980) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [opercular part of inferior frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0002980) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [opercular part of inferior frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0002980) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [opercular part of inferior frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0002980) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [opercular part of inferior frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0002980) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### ophthalmic artery `http://purl.obolibrary.org/obo/UBERON_0001619` +#### Removed +- [ophthalmic artery](http://purl.obolibrary.org/obo/UBERON_0001619) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ophthalmic artery](http://purl.obolibrary.org/obo/UBERON_0001619) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [ophthalmic artery](http://purl.obolibrary.org/obo/UBERON_0001619) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ophthalmic artery](http://purl.obolibrary.org/obo/UBERON_0001619) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ophthalmic artery](http://purl.obolibrary.org/obo/UBERON_0001619) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### ophthalmic plexus `http://purl.obolibrary.org/obo/UBERON_0011194` + +#### Added +- [ophthalmic plexus](http://purl.obolibrary.org/obo/UBERON_0011194) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [ophthalmic plexus](http://purl.obolibrary.org/obo/UBERON_0011194) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### ophthalmic vein `http://purl.obolibrary.org/obo/UBERON_0011191` +#### Removed +- [ophthalmic vein](http://purl.obolibrary.org/obo/UBERON_0011191) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ophthalmic vein](http://purl.obolibrary.org/obo/UBERON_0011191) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [ophthalmic vein](http://purl.obolibrary.org/obo/UBERON_0011191) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ophthalmic vein](http://purl.obolibrary.org/obo/UBERON_0011191) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [ophthalmic vein](http://purl.obolibrary.org/obo/UBERON_0011191) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### optic chiasma `http://purl.obolibrary.org/obo/UBERON_0000959` + +#### Added +- [optic chiasma](http://purl.obolibrary.org/obo/UBERON_0000959) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### optic radiation `http://purl.obolibrary.org/obo/UBERON_0022264` +#### Removed +- [optic radiation](http://purl.obolibrary.org/obo/UBERON_0022264) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [optic radiation](http://purl.obolibrary.org/obo/UBERON_0022264) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [optic radiation](http://purl.obolibrary.org/obo/UBERON_0022264) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [optic radiation](http://purl.obolibrary.org/obo/UBERON_0022264) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [optic radiation](http://purl.obolibrary.org/obo/UBERON_0022264) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [optic radiation](http://purl.obolibrary.org/obo/UBERON_0022264) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [optic radiation](http://purl.obolibrary.org/obo/UBERON_0022264) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [optic radiation](http://purl.obolibrary.org/obo/UBERON_0022264) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### optic tract `http://purl.obolibrary.org/obo/UBERON_0001908` +#### Removed +- [optic tract](http://purl.obolibrary.org/obo/UBERON_0001908) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [optic tract](http://purl.obolibrary.org/obo/UBERON_0001908) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [optic tract](http://purl.obolibrary.org/obo/UBERON_0001908) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [optic tract](http://purl.obolibrary.org/obo/UBERON_0001908) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [optic tract](http://purl.obolibrary.org/obo/UBERON_0001908) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [optic tract](http://purl.obolibrary.org/obo/UBERON_0001908) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [optic tract](http://purl.obolibrary.org/obo/UBERON_0001908) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [optic tract](http://purl.obolibrary.org/obo/UBERON_0001908) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### organ_slim `http://purl.obolibrary.org/obo/uberon/core#organ_slim` + +#### Added +- [organ_slim](http://purl.obolibrary.org/obo/uberon/core#organ_slim) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### outer cortex of kidney `http://purl.obolibrary.org/obo/UBERON_0002189` +#### Removed +- [outer cortex of kidney](http://purl.obolibrary.org/obo/UBERON_0002189) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [outer cortex of kidney](http://purl.obolibrary.org/obo/UBERON_0002189) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [outer cortex of kidney](http://purl.obolibrary.org/obo/UBERON_0002189) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [outer cortex of kidney](http://purl.obolibrary.org/obo/UBERON_0002189) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [outer cortex of kidney](http://purl.obolibrary.org/obo/UBERON_0002189) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [outer cortex of kidney](http://purl.obolibrary.org/obo/UBERON_0002189) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [outer cortex of kidney](http://purl.obolibrary.org/obo/UBERON_0002189) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.2/assets/VH_F_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [outer cortex of kidney](http://purl.obolibrary.org/obo/UBERON_0002189) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [outer cortex of kidney](http://purl.obolibrary.org/obo/UBERON_0002189) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [outer cortex of kidney](http://purl.obolibrary.org/obo/UBERON_0002189) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [outer cortex of kidney](http://purl.obolibrary.org/obo/UBERON_0002189) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [outer cortex of kidney](http://purl.obolibrary.org/obo/UBERON_0002189) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [outer cortex of kidney](http://purl.obolibrary.org/obo/UBERON_0002189) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [outer cortex of kidney](http://purl.obolibrary.org/obo/UBERON_0002189) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [outer cortex of kidney](http://purl.obolibrary.org/obo/UBERON_0002189) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.2/assets/VH_F_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [outer cortex of kidney](http://purl.obolibrary.org/obo/UBERON_0002189) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### palatine tonsil `http://purl.obolibrary.org/obo/UBERON_0002373` + +#### Added +- [palatine tonsil](http://purl.obolibrary.org/obo/UBERON_0002373) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [palatine tonsil](http://purl.obolibrary.org/obo/UBERON_0002373) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### palmar branch of median nerve `http://purl.obolibrary.org/obo/UBERON_0016430` + +#### Added +- [palmar branch of median nerve](http://purl.obolibrary.org/obo/UBERON_0016430) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [palmar branch of median nerve](http://purl.obolibrary.org/obo/UBERON_0016430) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### pancreas `http://purl.obolibrary.org/obo/UBERON_0001264` +#### Removed +- [pancreas](http://purl.obolibrary.org/obo/UBERON_0001264) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pancreas](http://purl.obolibrary.org/obo/UBERON_0001264) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [pancreas](http://purl.obolibrary.org/obo/UBERON_0001264) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.1/assets/VH_F_Pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pancreas](http://purl.obolibrary.org/obo/UBERON_0001264) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.2/assets/3d-vh-m-pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pancreas](http://purl.obolibrary.org/obo/UBERON_0001264) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.1/assets/VH_M_Pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pancreas](http://purl.obolibrary.org/obo/UBERON_0001264) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.0/assets/VH_M_Pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pancreas](http://purl.obolibrary.org/obo/UBERON_0001264) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.2/assets/3d-vh-f-pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pancreas](http://purl.obolibrary.org/obo/UBERON_0001264) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.0/assets/VH_F_Pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### papillary muscle of heart `http://purl.obolibrary.org/obo/UBERON_0002494` +#### Removed +- [papillary muscle of heart](http://purl.obolibrary.org/obo/UBERON_0002494) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [papillary muscle of heart](http://purl.obolibrary.org/obo/UBERON_0002494) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [papillary muscle of heart](http://purl.obolibrary.org/obo/UBERON_0002494) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [papillary muscle of heart](http://purl.obolibrary.org/obo/UBERON_0002494) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [papillary muscle of heart](http://purl.obolibrary.org/obo/UBERON_0002494) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [papillary muscle of heart](http://purl.obolibrary.org/obo/UBERON_0002494) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [papillary muscle of heart](http://purl.obolibrary.org/obo/UBERON_0002494) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [papillary muscle of heart](http://purl.obolibrary.org/obo/UBERON_0002494) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### parasympathetic nerve `http://purl.obolibrary.org/obo/UBERON_0004293` + +#### Added +- [parasympathetic nerve](http://purl.obolibrary.org/obo/UBERON_0004293) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [parasympathetic nerve](http://purl.obolibrary.org/obo/UBERON_0004293) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### parietal operculum `http://purl.obolibrary.org/obo/UBERON_0002911` +#### Removed +- [parietal operculum](http://purl.obolibrary.org/obo/UBERON_0002911) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [parietal operculum](http://purl.obolibrary.org/obo/UBERON_0002911) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [parietal operculum](http://purl.obolibrary.org/obo/UBERON_0002911) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [parietal operculum](http://purl.obolibrary.org/obo/UBERON_0002911) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [parietal operculum](http://purl.obolibrary.org/obo/UBERON_0002911) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [parietal operculum](http://purl.obolibrary.org/obo/UBERON_0002911) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [parietal operculum](http://purl.obolibrary.org/obo/UBERON_0002911) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [parietal operculum](http://purl.obolibrary.org/obo/UBERON_0002911) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### pelvic ganglion `http://purl.obolibrary.org/obo/UBERON_0016508` + +#### Added +- [pelvic ganglion](http://purl.obolibrary.org/obo/UBERON_0016508) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [pelvic ganglion](http://purl.obolibrary.org/obo/UBERON_0016508) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### pelvic splanchnic nerve `http://purl.obolibrary.org/obo/UBERON_0018675` + +#### Added +- [pelvic splanchnic nerve](http://purl.obolibrary.org/obo/UBERON_0018675) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [pelvic splanchnic nerve](http://purl.obolibrary.org/obo/UBERON_0018675) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### peripheral zone of prostate `http://purl.obolibrary.org/obo/UBERON_8410026` +#### Removed +- [peripheral zone of prostate](http://purl.obolibrary.org/obo/UBERON_8410026) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [peripheral zone of prostate](http://purl.obolibrary.org/obo/UBERON_8410026) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [peripheral zone of prostate](http://purl.obolibrary.org/obo/UBERON_8410026) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### pheno_slim `http://purl.obolibrary.org/obo/uberon/core#pheno_slim` + +#### Added +- [pheno_slim](http://purl.obolibrary.org/obo/uberon/core#pheno_slim) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### phenotype_rcn `http://purl.obolibrary.org/obo/uberon/core#phenotype_rcn` + +#### Added +- [phenotype_rcn](http://purl.obolibrary.org/obo/uberon/core#phenotype_rcn) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### pineal body `http://purl.obolibrary.org/obo/UBERON_0001905` +#### Removed +- [pineal body](http://purl.obolibrary.org/obo/UBERON_0001905) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pineal body](http://purl.obolibrary.org/obo/UBERON_0001905) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [pineal body](http://purl.obolibrary.org/obo/UBERON_0001905) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pineal body](http://purl.obolibrary.org/obo/UBERON_0001905) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pineal body](http://purl.obolibrary.org/obo/UBERON_0001905) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pineal body](http://purl.obolibrary.org/obo/UBERON_0001905) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pineal body](http://purl.obolibrary.org/obo/UBERON_0001905) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pineal body](http://purl.obolibrary.org/obo/UBERON_0001905) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### piriform cortex `http://purl.obolibrary.org/obo/UBERON_0004725` +#### Removed +- [piriform cortex](http://purl.obolibrary.org/obo/UBERON_0004725) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [piriform cortex](http://purl.obolibrary.org/obo/UBERON_0004725) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [piriform cortex](http://purl.obolibrary.org/obo/UBERON_0004725) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.0/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [piriform cortex](http://purl.obolibrary.org/obo/UBERON_0004725) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [piriform cortex](http://purl.obolibrary.org/obo/UBERON_0004725) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.0/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [piriform cortex](http://purl.obolibrary.org/obo/UBERON_0004725) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [piriform cortex](http://purl.obolibrary.org/obo/UBERON_0004725) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [piriform cortex](http://purl.obolibrary.org/obo/UBERON_0004725) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [piriform cortex](http://purl.obolibrary.org/obo/UBERON_0004725) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [piriform cortex](http://purl.obolibrary.org/obo/UBERON_0004725) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### placenta `http://purl.obolibrary.org/obo/UBERON_0001987` +#### Removed +- [placenta](http://purl.obolibrary.org/obo/UBERON_0001987) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Placenta.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [placenta](http://purl.obolibrary.org/obo/UBERON_0001987) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/placenta-full-term-female/v1.0/assets/VH_F_Placenta.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### placental disc `http://purl.obolibrary.org/obo/UBERON_8600038` + +#### Added +- [placental disc](http://purl.obolibrary.org/obo/UBERON_8600038) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [placental disc](http://purl.obolibrary.org/obo/UBERON_8600038) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### planum polare `http://purl.obolibrary.org/obo/UBERON_0023861` +#### Removed +- [planum polare](http://purl.obolibrary.org/obo/UBERON_0023861) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [planum polare](http://purl.obolibrary.org/obo/UBERON_0023861) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [planum polare](http://purl.obolibrary.org/obo/UBERON_0023861) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [planum polare](http://purl.obolibrary.org/obo/UBERON_0023861) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [planum polare](http://purl.obolibrary.org/obo/UBERON_0023861) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [planum polare](http://purl.obolibrary.org/obo/UBERON_0023861) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [planum polare](http://purl.obolibrary.org/obo/UBERON_0023861) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [planum polare](http://purl.obolibrary.org/obo/UBERON_0023861) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### planum temporale `http://purl.obolibrary.org/obo/UBERON_0022268` +#### Removed +- [planum temporale](http://purl.obolibrary.org/obo/UBERON_0022268) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [planum temporale](http://purl.obolibrary.org/obo/UBERON_0022268) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [planum temporale](http://purl.obolibrary.org/obo/UBERON_0022268) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [planum temporale](http://purl.obolibrary.org/obo/UBERON_0022268) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [planum temporale](http://purl.obolibrary.org/obo/UBERON_0022268) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [planum temporale](http://purl.obolibrary.org/obo/UBERON_0022268) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [planum temporale](http://purl.obolibrary.org/obo/UBERON_0022268) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [planum temporale](http://purl.obolibrary.org/obo/UBERON_0022268) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### pontine nuclear group `http://purl.obolibrary.org/obo/UBERON_0002151` +#### Removed +- [pontine nuclear group](http://purl.obolibrary.org/obo/UBERON_0002151) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pontine nuclear group](http://purl.obolibrary.org/obo/UBERON_0002151) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [pontine nuclear group](http://purl.obolibrary.org/obo/UBERON_0002151) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pontine nuclear group](http://purl.obolibrary.org/obo/UBERON_0002151) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pontine nuclear group](http://purl.obolibrary.org/obo/UBERON_0002151) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pontine nuclear group](http://purl.obolibrary.org/obo/UBERON_0002151) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pontine nuclear group](http://purl.obolibrary.org/obo/UBERON_0002151) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pontine nuclear group](http://purl.obolibrary.org/obo/UBERON_0002151) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### pontine tegmentum `http://purl.obolibrary.org/obo/UBERON_0003023` +#### Removed +- [pontine tegmentum](http://purl.obolibrary.org/obo/UBERON_0003023) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pontine tegmentum](http://purl.obolibrary.org/obo/UBERON_0003023) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [pontine tegmentum](http://purl.obolibrary.org/obo/UBERON_0003023) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pontine tegmentum](http://purl.obolibrary.org/obo/UBERON_0003023) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pontine tegmentum](http://purl.obolibrary.org/obo/UBERON_0003023) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pontine tegmentum](http://purl.obolibrary.org/obo/UBERON_0003023) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pontine tegmentum](http://purl.obolibrary.org/obo/UBERON_0003023) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pontine tegmentum](http://purl.obolibrary.org/obo/UBERON_0003023) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### postcentral gyrus `http://purl.obolibrary.org/obo/UBERON_0002581` +#### Removed +- [postcentral gyrus](http://purl.obolibrary.org/obo/UBERON_0002581) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [postcentral gyrus](http://purl.obolibrary.org/obo/UBERON_0002581) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [postcentral gyrus](http://purl.obolibrary.org/obo/UBERON_0002581) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [postcentral gyrus](http://purl.obolibrary.org/obo/UBERON_0002581) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [postcentral gyrus](http://purl.obolibrary.org/obo/UBERON_0002581) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [postcentral gyrus](http://purl.obolibrary.org/obo/UBERON_0002581) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [postcentral gyrus](http://purl.obolibrary.org/obo/UBERON_0002581) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [postcentral gyrus](http://purl.obolibrary.org/obo/UBERON_0002581) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### posterior cingulate gyrus `http://purl.obolibrary.org/obo/UBERON_0002740` +#### Removed +- [posterior cingulate gyrus](http://purl.obolibrary.org/obo/UBERON_0002740) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [posterior cingulate gyrus](http://purl.obolibrary.org/obo/UBERON_0002740) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [posterior cingulate gyrus](http://purl.obolibrary.org/obo/UBERON_0002740) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [posterior cingulate gyrus](http://purl.obolibrary.org/obo/UBERON_0002740) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [posterior cingulate gyrus](http://purl.obolibrary.org/obo/UBERON_0002740) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [posterior cingulate gyrus](http://purl.obolibrary.org/obo/UBERON_0002740) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [posterior cingulate gyrus](http://purl.obolibrary.org/obo/UBERON_0002740) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [posterior cingulate gyrus](http://purl.obolibrary.org/obo/UBERON_0002740) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### posterior parahippocampal gyrus `http://purl.obolibrary.org/obo/UBERON_0002657` +#### Removed +- [posterior parahippocampal gyrus](http://purl.obolibrary.org/obo/UBERON_0002657) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [posterior parahippocampal gyrus](http://purl.obolibrary.org/obo/UBERON_0002657) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [posterior parahippocampal gyrus](http://purl.obolibrary.org/obo/UBERON_0002657) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [posterior parahippocampal gyrus](http://purl.obolibrary.org/obo/UBERON_0002657) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [posterior parahippocampal gyrus](http://purl.obolibrary.org/obo/UBERON_0002657) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [posterior parahippocampal gyrus](http://purl.obolibrary.org/obo/UBERON_0002657) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [posterior parahippocampal gyrus](http://purl.obolibrary.org/obo/UBERON_0002657) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [posterior parahippocampal gyrus](http://purl.obolibrary.org/obo/UBERON_0002657) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### postganglionic autonomic fiber `http://purl.obolibrary.org/obo/UBERON_0011924` + +#### Added +- [postganglionic autonomic fiber](http://purl.obolibrary.org/obo/UBERON_0011924) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [postganglionic autonomic fiber](http://purl.obolibrary.org/obo/UBERON_0011924) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### postganglionic parasympathetic fiber `http://purl.obolibrary.org/obo/UBERON_0011929` + +#### Added +- [postganglionic parasympathetic fiber](http://purl.obolibrary.org/obo/UBERON_0011929) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [postganglionic parasympathetic fiber](http://purl.obolibrary.org/obo/UBERON_0011929) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### postganglionic sympathetic fiber `http://purl.obolibrary.org/obo/UBERON_0011926` + +#### Added +- [postganglionic sympathetic fiber](http://purl.obolibrary.org/obo/UBERON_0011926) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [postganglionic sympathetic fiber](http://purl.obolibrary.org/obo/UBERON_0011926) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### precentral gyrus `http://purl.obolibrary.org/obo/UBERON_0002703` +#### Removed +- [precentral gyrus](http://purl.obolibrary.org/obo/UBERON_0002703) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [precentral gyrus](http://purl.obolibrary.org/obo/UBERON_0002703) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [precentral gyrus](http://purl.obolibrary.org/obo/UBERON_0002703) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [precentral gyrus](http://purl.obolibrary.org/obo/UBERON_0002703) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [precentral gyrus](http://purl.obolibrary.org/obo/UBERON_0002703) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [precentral gyrus](http://purl.obolibrary.org/obo/UBERON_0002703) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [precentral gyrus](http://purl.obolibrary.org/obo/UBERON_0002703) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [precentral gyrus](http://purl.obolibrary.org/obo/UBERON_0002703) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### precuneus cortex `http://purl.obolibrary.org/obo/UBERON_0006093` +#### Removed +- [precuneus cortex](http://purl.obolibrary.org/obo/UBERON_0006093) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [precuneus cortex](http://purl.obolibrary.org/obo/UBERON_0006093) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [precuneus cortex](http://purl.obolibrary.org/obo/UBERON_0006093) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [precuneus cortex](http://purl.obolibrary.org/obo/UBERON_0006093) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [precuneus cortex](http://purl.obolibrary.org/obo/UBERON_0006093) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [precuneus cortex](http://purl.obolibrary.org/obo/UBERON_0006093) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [precuneus cortex](http://purl.obolibrary.org/obo/UBERON_0006093) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [precuneus cortex](http://purl.obolibrary.org/obo/UBERON_0006093) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### preferred term in the context of comparative anatomy `http://purl.obolibrary.org/obo/uberon/core#COMPARATIVE_PREFERRED` + +#### Added +- [preferred term in the context of comparative anatomy](http://purl.obolibrary.org/obo/uberon/core#COMPARATIVE_PREFERRED) SubPropertyOf: [SynonymTypeProperty](http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty) + + +### preferred term when talking about an instance of this class in Homo sapiens `http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED` + +#### Added +- [preferred term when talking about an instance of this class in Homo sapiens](http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED) SubPropertyOf: [SynonymTypeProperty](http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty) + + +### preganglionic autonomic fiber `http://purl.obolibrary.org/obo/UBERON_0011925` + +#### Added +- [preganglionic autonomic fiber](http://purl.obolibrary.org/obo/UBERON_0011925) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [preganglionic autonomic fiber](http://purl.obolibrary.org/obo/UBERON_0011925) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### prostate duct `http://purl.obolibrary.org/obo/UBERON_0002485` +#### Removed +- [prostate duct](http://purl.obolibrary.org/obo/UBERON_0002485) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [prostate duct](http://purl.obolibrary.org/obo/UBERON_0002485) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [prostate duct](http://purl.obolibrary.org/obo/UBERON_0002485) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### prostate gland `http://purl.obolibrary.org/obo/UBERON_0002367` +#### Removed +- [prostate gland](http://purl.obolibrary.org/obo/UBERON_0002367) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [prostate gland](http://purl.obolibrary.org/obo/UBERON_0002367) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [prostate gland](http://purl.obolibrary.org/obo/UBERON_0002367) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### prostatic urethra `http://purl.obolibrary.org/obo/UBERON_0001335` +#### Removed +- [prostatic urethra](http://purl.obolibrary.org/obo/UBERON_0001335) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Urethra.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [prostatic urethra](http://purl.obolibrary.org/obo/UBERON_0001335) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### prostatic utricle `http://purl.obolibrary.org/obo/UBERON_0011199` +#### Removed +- [prostatic utricle](http://purl.obolibrary.org/obo/UBERON_0011199) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [prostatic utricle](http://purl.obolibrary.org/obo/UBERON_0011199) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [prostatic utricle](http://purl.obolibrary.org/obo/UBERON_0011199) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### pubis `http://purl.obolibrary.org/obo/UBERON_0001275` +#### Removed +- [pubis](http://purl.obolibrary.org/obo/UBERON_0001275) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pubis](http://purl.obolibrary.org/obo/UBERON_0001275) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [pubis](http://purl.obolibrary.org/obo/UBERON_0001275) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.2/assets/VH_M_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pubis](http://purl.obolibrary.org/obo/UBERON_0001275) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.1/assets/VH_F_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pubis](http://purl.obolibrary.org/obo/UBERON_0001275) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.1/assets/VH_M_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pubis](http://purl.obolibrary.org/obo/UBERON_0001275) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.2/assets/VH_F_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pubis](http://purl.obolibrary.org/obo/UBERON_0001275) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.0/assets/VH_M_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pubis](http://purl.obolibrary.org/obo/UBERON_0001275) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.0/assets/VH_F_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### pulmonary artery `http://purl.obolibrary.org/obo/UBERON_0002012` +#### Removed +- [pulmonary artery](http://purl.obolibrary.org/obo/UBERON_0002012) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pulmonary artery](http://purl.obolibrary.org/obo/UBERON_0002012) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [pulmonary artery](http://purl.obolibrary.org/obo/UBERON_0002012) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pulmonary artery](http://purl.obolibrary.org/obo/UBERON_0002012) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pulmonary artery](http://purl.obolibrary.org/obo/UBERON_0002012) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pulmonary artery](http://purl.obolibrary.org/obo/UBERON_0002012) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pulmonary artery](http://purl.obolibrary.org/obo/UBERON_0002012) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pulmonary artery](http://purl.obolibrary.org/obo/UBERON_0002012) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### pulmonary trunk `http://purl.obolibrary.org/obo/UBERON_0002333` +#### Removed +- [pulmonary trunk](http://purl.obolibrary.org/obo/UBERON_0002333) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pulmonary trunk](http://purl.obolibrary.org/obo/UBERON_0002333) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [pulmonary trunk](http://purl.obolibrary.org/obo/UBERON_0002333) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pulmonary trunk](http://purl.obolibrary.org/obo/UBERON_0002333) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pulmonary trunk](http://purl.obolibrary.org/obo/UBERON_0002333) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pulmonary trunk](http://purl.obolibrary.org/obo/UBERON_0002333) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pulmonary trunk](http://purl.obolibrary.org/obo/UBERON_0002333) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pulmonary trunk](http://purl.obolibrary.org/obo/UBERON_0002333) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### pulmonary valve `http://purl.obolibrary.org/obo/UBERON_0002146` +#### Removed +- [pulmonary valve](http://purl.obolibrary.org/obo/UBERON_0002146) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pulmonary valve](http://purl.obolibrary.org/obo/UBERON_0002146) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [pulmonary valve](http://purl.obolibrary.org/obo/UBERON_0002146) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pulmonary valve](http://purl.obolibrary.org/obo/UBERON_0002146) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pulmonary valve](http://purl.obolibrary.org/obo/UBERON_0002146) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pulmonary valve](http://purl.obolibrary.org/obo/UBERON_0002146) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pulmonary valve](http://purl.obolibrary.org/obo/UBERON_0002146) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pulmonary valve](http://purl.obolibrary.org/obo/UBERON_0002146) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### pulmonary vein `http://purl.obolibrary.org/obo/UBERON_0002016` +#### Removed +- [pulmonary vein](http://purl.obolibrary.org/obo/UBERON_0002016) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pulmonary vein](http://purl.obolibrary.org/obo/UBERON_0002016) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [pulmonary vein](http://purl.obolibrary.org/obo/UBERON_0002016) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pulmonary vein](http://purl.obolibrary.org/obo/UBERON_0002016) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pulmonary vein](http://purl.obolibrary.org/obo/UBERON_0002016) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pulmonary vein](http://purl.obolibrary.org/obo/UBERON_0002016) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pulmonary vein](http://purl.obolibrary.org/obo/UBERON_0002016) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [pulmonary vein](http://purl.obolibrary.org/obo/UBERON_0002016) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### quadrate lobe of liver `http://purl.obolibrary.org/obo/UBERON_0001116` +#### Removed +- [quadrate lobe of liver](http://purl.obolibrary.org/obo/UBERON_0001116) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [quadrate lobe of liver](http://purl.obolibrary.org/obo/UBERON_0001116) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [quadrate lobe of liver](http://purl.obolibrary.org/obo/UBERON_0001116) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [quadrate lobe of liver](http://purl.obolibrary.org/obo/UBERON_0001116) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [quadrate lobe of liver](http://purl.obolibrary.org/obo/UBERON_0001116) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [quadrate lobe of liver](http://purl.obolibrary.org/obo/UBERON_0001116) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### rectum `http://purl.obolibrary.org/obo/UBERON_0001052` +#### Removed +- [rectum](http://purl.obolibrary.org/obo/UBERON_0001052) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [rectum](http://purl.obolibrary.org/obo/UBERON_0001052) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [rectum](http://purl.obolibrary.org/obo/UBERON_0001052) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [rectum](http://purl.obolibrary.org/obo/UBERON_0001052) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [rectum](http://purl.obolibrary.org/obo/UBERON_0001052) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [rectum](http://purl.obolibrary.org/obo/UBERON_0001052) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [rectum](http://purl.obolibrary.org/obo/UBERON_0001052) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [rectum](http://purl.obolibrary.org/obo/UBERON_0001052) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### recurrent laryngeal nerve `http://purl.obolibrary.org/obo/UBERON_0003716` + +#### Added +- [recurrent laryngeal nerve](http://purl.obolibrary.org/obo/UBERON_0003716) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [recurrent laryngeal nerve](http://purl.obolibrary.org/obo/UBERON_0003716) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### red nucleus `http://purl.obolibrary.org/obo/UBERON_0001947` +#### Removed +- [red nucleus](http://purl.obolibrary.org/obo/UBERON_0001947) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [red nucleus](http://purl.obolibrary.org/obo/UBERON_0001947) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [red nucleus](http://purl.obolibrary.org/obo/UBERON_0001947) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [red nucleus](http://purl.obolibrary.org/obo/UBERON_0001947) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [red nucleus](http://purl.obolibrary.org/obo/UBERON_0001947) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [red nucleus](http://purl.obolibrary.org/obo/UBERON_0001947) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [red nucleus](http://purl.obolibrary.org/obo/UBERON_0001947) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [red nucleus](http://purl.obolibrary.org/obo/UBERON_0001947) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### renal artery `http://purl.obolibrary.org/obo/UBERON_0001184` +#### Removed +- [renal artery](http://purl.obolibrary.org/obo/UBERON_0001184) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal artery](http://purl.obolibrary.org/obo/UBERON_0001184) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [renal artery](http://purl.obolibrary.org/obo/UBERON_0001184) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal artery](http://purl.obolibrary.org/obo/UBERON_0001184) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal artery](http://purl.obolibrary.org/obo/UBERON_0001184) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal artery](http://purl.obolibrary.org/obo/UBERON_0001184) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal artery](http://purl.obolibrary.org/obo/UBERON_0001184) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### renal column `http://purl.obolibrary.org/obo/UBERON_0001284` +#### Removed +- [renal column](http://purl.obolibrary.org/obo/UBERON_0001284) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal column](http://purl.obolibrary.org/obo/UBERON_0001284) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal column](http://purl.obolibrary.org/obo/UBERON_0001284) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal column](http://purl.obolibrary.org/obo/UBERON_0001284) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [renal column](http://purl.obolibrary.org/obo/UBERON_0001284) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal column](http://purl.obolibrary.org/obo/UBERON_0001284) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal column](http://purl.obolibrary.org/obo/UBERON_0001284) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal column](http://purl.obolibrary.org/obo/UBERON_0001284) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal column](http://purl.obolibrary.org/obo/UBERON_0001284) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.2/assets/VH_F_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal column](http://purl.obolibrary.org/obo/UBERON_0001284) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal column](http://purl.obolibrary.org/obo/UBERON_0001284) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal column](http://purl.obolibrary.org/obo/UBERON_0001284) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal column](http://purl.obolibrary.org/obo/UBERON_0001284) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal column](http://purl.obolibrary.org/obo/UBERON_0001284) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal column](http://purl.obolibrary.org/obo/UBERON_0001284) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal column](http://purl.obolibrary.org/obo/UBERON_0001284) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.2/assets/VH_F_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### renal medulla `http://purl.obolibrary.org/obo/UBERON_0000362` +#### Removed +- [renal medulla](http://purl.obolibrary.org/obo/UBERON_0000362) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal medulla](http://purl.obolibrary.org/obo/UBERON_0000362) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal medulla](http://purl.obolibrary.org/obo/UBERON_0000362) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal medulla](http://purl.obolibrary.org/obo/UBERON_0000362) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [renal medulla](http://purl.obolibrary.org/obo/UBERON_0000362) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal medulla](http://purl.obolibrary.org/obo/UBERON_0000362) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal medulla](http://purl.obolibrary.org/obo/UBERON_0000362) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal medulla](http://purl.obolibrary.org/obo/UBERON_0000362) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal medulla](http://purl.obolibrary.org/obo/UBERON_0000362) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.2/assets/VH_F_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal medulla](http://purl.obolibrary.org/obo/UBERON_0000362) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal medulla](http://purl.obolibrary.org/obo/UBERON_0000362) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal medulla](http://purl.obolibrary.org/obo/UBERON_0000362) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal medulla](http://purl.obolibrary.org/obo/UBERON_0000362) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.2/assets/VH_F_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal medulla](http://purl.obolibrary.org/obo/UBERON_0000362) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal medulla](http://purl.obolibrary.org/obo/UBERON_0000362) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal medulla](http://purl.obolibrary.org/obo/UBERON_0000362) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### renal papilla `http://purl.obolibrary.org/obo/UBERON_0001228` +#### Removed +- [renal papilla](http://purl.obolibrary.org/obo/UBERON_0001228) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Ureter_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal papilla](http://purl.obolibrary.org/obo/UBERON_0001228) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal papilla](http://purl.obolibrary.org/obo/UBERON_0001228) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Ureter_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal papilla](http://purl.obolibrary.org/obo/UBERON_0001228) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [renal papilla](http://purl.obolibrary.org/obo/UBERON_0001228) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal papilla](http://purl.obolibrary.org/obo/UBERON_0001228) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal papilla](http://purl.obolibrary.org/obo/UBERON_0001228) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal papilla](http://purl.obolibrary.org/obo/UBERON_0001228) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal papilla](http://purl.obolibrary.org/obo/UBERON_0001228) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal papilla](http://purl.obolibrary.org/obo/UBERON_0001228) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal papilla](http://purl.obolibrary.org/obo/UBERON_0001228) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal papilla](http://purl.obolibrary.org/obo/UBERON_0001228) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal papilla](http://purl.obolibrary.org/obo/UBERON_0001228) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal papilla](http://purl.obolibrary.org/obo/UBERON_0001228) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### renal pelvis `http://purl.obolibrary.org/obo/UBERON_0001224` + +#### Added +- [renal pelvis](http://purl.obolibrary.org/obo/UBERON_0001224) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal pelvis](http://purl.obolibrary.org/obo/UBERON_0001224) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal pelvis](http://purl.obolibrary.org/obo/UBERON_0001224) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal pelvis](http://purl.obolibrary.org/obo/UBERON_0001224) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal pelvis](http://purl.obolibrary.org/obo/UBERON_0001224) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal pelvis](http://purl.obolibrary.org/obo/UBERON_0001224) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal pelvis](http://purl.obolibrary.org/obo/UBERON_0001224) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal pelvis](http://purl.obolibrary.org/obo/UBERON_0001224) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### renal vein `http://purl.obolibrary.org/obo/UBERON_0001140` +#### Removed +- [renal vein](http://purl.obolibrary.org/obo/UBERON_0001140) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal vein](http://purl.obolibrary.org/obo/UBERON_0001140) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [renal vein](http://purl.obolibrary.org/obo/UBERON_0001140) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal vein](http://purl.obolibrary.org/obo/UBERON_0001140) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal vein](http://purl.obolibrary.org/obo/UBERON_0001140) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal vein](http://purl.obolibrary.org/obo/UBERON_0001140) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [renal vein](http://purl.obolibrary.org/obo/UBERON_0001140) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### respiratory system `http://purl.obolibrary.org/obo/UBERON_0001004` +#### Removed +- [respiratory system](http://purl.obolibrary.org/obo/UBERON_0001004) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [respiratory system](http://purl.obolibrary.org/obo/UBERON_0001004) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [respiratory system](http://purl.obolibrary.org/obo/UBERON_0001004) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [respiratory system](http://purl.obolibrary.org/obo/UBERON_0001004) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [respiratory system](http://purl.obolibrary.org/obo/UBERON_0001004) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [respiratory system](http://purl.obolibrary.org/obo/UBERON_0001004) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [respiratory system](http://purl.obolibrary.org/obo/UBERON_0001004) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [respiratory system](http://purl.obolibrary.org/obo/UBERON_0001004) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [respiratory system](http://purl.obolibrary.org/obo/UBERON_0001004) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [respiratory system](http://purl.obolibrary.org/obo/UBERON_0001004) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.0/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [respiratory system](http://purl.obolibrary.org/obo/UBERON_0001004) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### right cardiac atrium `http://purl.obolibrary.org/obo/UBERON_0002078` +#### Removed +- [right cardiac atrium](http://purl.obolibrary.org/obo/UBERON_0002078) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right cardiac atrium](http://purl.obolibrary.org/obo/UBERON_0002078) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [right cardiac atrium](http://purl.obolibrary.org/obo/UBERON_0002078) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right cardiac atrium](http://purl.obolibrary.org/obo/UBERON_0002078) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right cardiac atrium](http://purl.obolibrary.org/obo/UBERON_0002078) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right cardiac atrium](http://purl.obolibrary.org/obo/UBERON_0002078) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right cardiac atrium](http://purl.obolibrary.org/obo/UBERON_0002078) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right cardiac atrium](http://purl.obolibrary.org/obo/UBERON_0002078) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### right cerebral hemisphere `http://purl.obolibrary.org/obo/UBERON_0002813` +#### Removed +- [right cerebral hemisphere](http://purl.obolibrary.org/obo/UBERON_0002813) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right cerebral hemisphere](http://purl.obolibrary.org/obo/UBERON_0002813) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [right cerebral hemisphere](http://purl.obolibrary.org/obo/UBERON_0002813) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.0/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right cerebral hemisphere](http://purl.obolibrary.org/obo/UBERON_0002813) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right cerebral hemisphere](http://purl.obolibrary.org/obo/UBERON_0002813) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right cerebral hemisphere](http://purl.obolibrary.org/obo/UBERON_0002813) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right cerebral hemisphere](http://purl.obolibrary.org/obo/UBERON_0002813) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right cerebral hemisphere](http://purl.obolibrary.org/obo/UBERON_0002813) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right cerebral hemisphere](http://purl.obolibrary.org/obo/UBERON_0002813) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right cerebral hemisphere](http://purl.obolibrary.org/obo/UBERON_0002813) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.0/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### right coronary artery `http://purl.obolibrary.org/obo/UBERON_0001625` +#### Removed +- [right coronary artery](http://purl.obolibrary.org/obo/UBERON_0001625) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right coronary artery](http://purl.obolibrary.org/obo/UBERON_0001625) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [right coronary artery](http://purl.obolibrary.org/obo/UBERON_0001625) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right coronary artery](http://purl.obolibrary.org/obo/UBERON_0001625) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right coronary artery](http://purl.obolibrary.org/obo/UBERON_0001625) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right coronary artery](http://purl.obolibrary.org/obo/UBERON_0001625) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right coronary artery](http://purl.obolibrary.org/obo/UBERON_0001625) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right coronary artery](http://purl.obolibrary.org/obo/UBERON_0001625) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### right eye `http://purl.obolibrary.org/obo/UBERON_0004549` +#### Removed +- [right eye](http://purl.obolibrary.org/obo/UBERON_0004549) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-r.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right eye](http://purl.obolibrary.org/obo/UBERON_0004549) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-r.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [right eye](http://purl.obolibrary.org/obo/UBERON_0004549) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.1/assets/VH_M_Eye_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right eye](http://purl.obolibrary.org/obo/UBERON_0004549) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.2/assets/3d-vh-f-eye-r.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right eye](http://purl.obolibrary.org/obo/UBERON_0004549) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.2/assets/3d-vh-m-eye-r.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right eye](http://purl.obolibrary.org/obo/UBERON_0004549) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.1/assets/VH_F_Eye_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### right kidney `http://purl.obolibrary.org/obo/UBERON_0004539` +#### Removed +- [right kidney](http://purl.obolibrary.org/obo/UBERON_0004539) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Kidney_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right kidney](http://purl.obolibrary.org/obo/UBERON_0004539) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right kidney](http://purl.obolibrary.org/obo/UBERON_0004539) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [right kidney](http://purl.obolibrary.org/obo/UBERON_0004539) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right kidney](http://purl.obolibrary.org/obo/UBERON_0004539) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.2/assets/VH_F_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right kidney](http://purl.obolibrary.org/obo/UBERON_0004539) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right kidney](http://purl.obolibrary.org/obo/UBERON_0004539) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right kidney](http://purl.obolibrary.org/obo/UBERON_0004539) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right kidney](http://purl.obolibrary.org/obo/UBERON_0004539) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### right lobe of liver `http://purl.obolibrary.org/obo/UBERON_0001114` +#### Removed +- [right lobe of liver](http://purl.obolibrary.org/obo/UBERON_0001114) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right lobe of liver](http://purl.obolibrary.org/obo/UBERON_0001114) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [right lobe of liver](http://purl.obolibrary.org/obo/UBERON_0001114) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right lobe of liver](http://purl.obolibrary.org/obo/UBERON_0001114) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right lobe of liver](http://purl.obolibrary.org/obo/UBERON_0001114) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right lobe of liver](http://purl.obolibrary.org/obo/UBERON_0001114) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### right lung `http://purl.obolibrary.org/obo/UBERON_0002167` +#### Removed +- [right lung](http://purl.obolibrary.org/obo/UBERON_0002167) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right lung](http://purl.obolibrary.org/obo/UBERON_0002167) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [right lung](http://purl.obolibrary.org/obo/UBERON_0002167) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right lung](http://purl.obolibrary.org/obo/UBERON_0002167) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right lung](http://purl.obolibrary.org/obo/UBERON_0002167) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right lung](http://purl.obolibrary.org/obo/UBERON_0002167) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right lung](http://purl.obolibrary.org/obo/UBERON_0002167) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right lung](http://purl.obolibrary.org/obo/UBERON_0002167) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right lung](http://purl.obolibrary.org/obo/UBERON_0002167) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### right lung hilus `http://purl.obolibrary.org/obo/UBERON_0004888` +#### Removed +- [right lung hilus](http://purl.obolibrary.org/obo/UBERON_0004888) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right lung hilus](http://purl.obolibrary.org/obo/UBERON_0004888) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [right lung hilus](http://purl.obolibrary.org/obo/UBERON_0004888) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right lung hilus](http://purl.obolibrary.org/obo/UBERON_0004888) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right lung hilus](http://purl.obolibrary.org/obo/UBERON_0004888) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right lung hilus](http://purl.obolibrary.org/obo/UBERON_0004888) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right lung hilus](http://purl.obolibrary.org/obo/UBERON_0004888) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right lung hilus](http://purl.obolibrary.org/obo/UBERON_0004888) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right lung hilus](http://purl.obolibrary.org/obo/UBERON_0004888) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### right main bronchus `http://purl.obolibrary.org/obo/UBERON_0002177` +#### Removed +- [right main bronchus](http://purl.obolibrary.org/obo/UBERON_0002177) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-main-bronchus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right main bronchus](http://purl.obolibrary.org/obo/UBERON_0002177) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-main-bronchus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [right main bronchus](http://purl.obolibrary.org/obo/UBERON_0002177) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right main bronchus](http://purl.obolibrary.org/obo/UBERON_0002177) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/main-bronchus-male/v1.0/assets/3d-vh-m-main-bronchus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right main bronchus](http://purl.obolibrary.org/obo/UBERON_0002177) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right main bronchus](http://purl.obolibrary.org/obo/UBERON_0002177) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right main bronchus](http://purl.obolibrary.org/obo/UBERON_0002177) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right main bronchus](http://purl.obolibrary.org/obo/UBERON_0002177) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right main bronchus](http://purl.obolibrary.org/obo/UBERON_0002177) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/main-bronchus-female/v1.0/assets/3d-vh-f-main-bronchus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### right nipple `http://purl.obolibrary.org/obo/UBERON_0013773` +#### Removed +- [right nipple](http://purl.obolibrary.org/obo/UBERON_0013773) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-r.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [right nipple](http://purl.obolibrary.org/obo/UBERON_0013773) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-right/v1.0/assets/3d-vh-f-mammary-gland-r.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### right pulmonary artery `http://purl.obolibrary.org/obo/UBERON_0001651` +#### Removed +- [right pulmonary artery](http://purl.obolibrary.org/obo/UBERON_0001651) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right pulmonary artery](http://purl.obolibrary.org/obo/UBERON_0001651) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [right pulmonary artery](http://purl.obolibrary.org/obo/UBERON_0001651) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right pulmonary artery](http://purl.obolibrary.org/obo/UBERON_0001651) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right pulmonary artery](http://purl.obolibrary.org/obo/UBERON_0001651) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right pulmonary artery](http://purl.obolibrary.org/obo/UBERON_0001651) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right pulmonary artery](http://purl.obolibrary.org/obo/UBERON_0001651) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right pulmonary artery](http://purl.obolibrary.org/obo/UBERON_0001651) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### right pupil `http://purl.obolibrary.org/obo/UBERON_0010224` +#### Removed +- [right pupil](http://purl.obolibrary.org/obo/UBERON_0010224) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-r.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right pupil](http://purl.obolibrary.org/obo/UBERON_0010224) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-r.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [right pupil](http://purl.obolibrary.org/obo/UBERON_0010224) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.1/assets/VH_F_Eye_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right pupil](http://purl.obolibrary.org/obo/UBERON_0010224) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.0/assets/VH_M_Eye_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right pupil](http://purl.obolibrary.org/obo/UBERON_0010224) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.2/assets/3d-vh-m-eye-r.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right pupil](http://purl.obolibrary.org/obo/UBERON_0010224) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.0/assets/VH_F_Eye_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right pupil](http://purl.obolibrary.org/obo/UBERON_0010224) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.2/assets/3d-vh-f-eye-r.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right pupil](http://purl.obolibrary.org/obo/UBERON_0010224) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.1/assets/VH_M_Eye_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### right putamen `http://purl.obolibrary.org/obo/UBERON_0008885` +#### Removed +- [right putamen](http://purl.obolibrary.org/obo/UBERON_0008885) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right putamen](http://purl.obolibrary.org/obo/UBERON_0008885) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [right putamen](http://purl.obolibrary.org/obo/UBERON_0008885) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right putamen](http://purl.obolibrary.org/obo/UBERON_0008885) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right putamen](http://purl.obolibrary.org/obo/UBERON_0008885) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right putamen](http://purl.obolibrary.org/obo/UBERON_0008885) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right putamen](http://purl.obolibrary.org/obo/UBERON_0008885) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right putamen](http://purl.obolibrary.org/obo/UBERON_0008885) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### right renal artery `http://purl.obolibrary.org/obo/UBERON_0001185` +#### Removed +- [right renal artery](http://purl.obolibrary.org/obo/UBERON_0001185) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right renal artery](http://purl.obolibrary.org/obo/UBERON_0001185) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -## Right -- Ontology IRI: `http://purl.obolibrary.org/obo/uberon/uberon-base.owl` -- Version IRI: `http://purl.obolibrary.org/obo/uberon/releases/2024-05-13/uberon-base.owl` -- Loaded from: `file:/Users/anitac/Documents/GitHub/uberon/src/ontology/diffs/../../../uberon-base.owl` +#### Added +- [right renal artery](http://purl.obolibrary.org/obo/UBERON_0001185) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### Ontology imports +- [right renal artery](http://purl.obolibrary.org/obo/UBERON_0001185) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [right renal artery](http://purl.obolibrary.org/obo/UBERON_0001185) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [right renal artery](http://purl.obolibrary.org/obo/UBERON_0001185) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### Ontology annotations +- [right renal artery](http://purl.obolibrary.org/obo/UBERON_0001185) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### right renal vein `http://purl.obolibrary.org/obo/UBERON_0001141` #### Removed -- [versionInfo](http://www.w3.org/2002/07/owl#versionInfo) "2024-03-22" +- [right renal vein](http://purl.obolibrary.org/obo/UBERON_0001141) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right renal vein](http://purl.obolibrary.org/obo/UBERON_0001141) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) #### Added -- [versionInfo](http://www.w3.org/2002/07/owl#versionInfo) "2024-05-13" +- [right renal vein](http://purl.obolibrary.org/obo/UBERON_0001141) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [right renal vein](http://purl.obolibrary.org/obo/UBERON_0001141) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### GO_0000003 `http://purl.obolibrary.org/obo/GO_0000003` -#### Removed -- Class: [GO_0000003](http://purl.obolibrary.org/obo/GO_0000003) +- [right renal vein](http://purl.obolibrary.org/obo/UBERON_0001141) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right renal vein](http://purl.obolibrary.org/obo/UBERON_0001141) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [right renal vein](http://purl.obolibrary.org/obo/UBERON_0001141) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### GO_0022414 `http://purl.obolibrary.org/obo/GO_0022414` +### right thymus lobe `http://purl.obolibrary.org/obo/UBERON_0005469` +#### Removed +- [right thymus lobe](http://purl.obolibrary.org/obo/UBERON_0005469) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Thymus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [right thymus lobe](http://purl.obolibrary.org/obo/UBERON_0005469) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Thymus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) #### Added -- Class: [GO_0022414](http://purl.obolibrary.org/obo/GO_0022414) +- [right thymus lobe](http://purl.obolibrary.org/obo/UBERON_0005469) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.2/assets/VH_F_Thymus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [right thymus lobe](http://purl.obolibrary.org/obo/UBERON_0005469) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.2/assets/VH_M_Thymus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### PR_000050567 `http://purl.obolibrary.org/obo/PR_000050567` -#### Removed -- Class: [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [right thymus lobe](http://purl.obolibrary.org/obo/UBERON_0005469) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.0/assets/VH_M_Thymus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [right thymus lobe](http://purl.obolibrary.org/obo/UBERON_0005469) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.0/assets/VH_F_Thymus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [right thymus lobe](http://purl.obolibrary.org/obo/UBERON_0005469) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.1/assets/VH_M_Thymus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### Reissner's fiber `http://purl.obolibrary.org/obo/UBERON_0011357` -#### Removed -- [Reissner's fiber](http://purl.obolibrary.org/obo/UBERON_0011357) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [right thymus lobe](http://purl.obolibrary.org/obo/UBERON_0005469) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.1/assets/VH_F_Thymus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +### right ureter `http://purl.obolibrary.org/obo/UBERON_0001222` +#### Removed +- [right ureter](http://purl.obolibrary.org/obo/UBERON_0001222) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Ureter_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### adenohypophysis `http://purl.obolibrary.org/obo/UBERON_0002196` +- [right ureter](http://purl.obolibrary.org/obo/UBERON_0001222) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Ureter_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) #### Added -- [adenohypophysis](http://purl.obolibrary.org/obo/UBERON_0002196) SubClassOf [reproductive structure](http://purl.obolibrary.org/obo/UBERON_0005156) +- [right ureter](http://purl.obolibrary.org/obo/UBERON_0001222) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-female-right/v1.0/assets/VH_F_Ureter_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [right ureter](http://purl.obolibrary.org/obo/UBERON_0001222) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-male-right/v1.0/assets/VH_M_Ureter_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### adrenal gland capsule `http://purl.obolibrary.org/obo/UBERON_0002052` -#### Removed -- [adrenal gland capsule](http://purl.obolibrary.org/obo/UBERON_0002052) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [right ureter](http://purl.obolibrary.org/obo/UBERON_0001222) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-male-right/v1.1/assets/VH_M_Ureter_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [right ureter](http://purl.obolibrary.org/obo/UBERON_0001222) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [right ureter](http://purl.obolibrary.org/obo/UBERON_0001222) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### amnion `http://purl.obolibrary.org/obo/UBERON_0000305` +- [right ureter](http://purl.obolibrary.org/obo/UBERON_0001222) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-female-right/v1.1/assets/VH_F_Ureter_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### right uterine tube `http://purl.obolibrary.org/obo/UBERON_0001302` #### Removed -- [amnion](http://purl.obolibrary.org/obo/UBERON_0000305) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [right uterine tube](http://purl.obolibrary.org/obo/UBERON_0001302) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Fallopian_Tube_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [right uterine tube](http://purl.obolibrary.org/obo/UBERON_0001302) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/fallopian-tube-female-right/v1.1/assets/VH_F_Fallopian_Tube_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [right uterine tube](http://purl.obolibrary.org/obo/UBERON_0001302) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/fallopian-tube-female-right/v1.0/assets/VH_F_Fallopian_Tube_R.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### annular ligament of stapes `http://purl.obolibrary.org/obo/UBERON_0018161` -#### Removed -- [annular ligament of stapes](http://purl.obolibrary.org/obo/UBERON_0018161) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### root of cranial nerve `http://purl.obolibrary.org/obo/UBERON_0006843` +#### Added +- [root of cranial nerve](http://purl.obolibrary.org/obo/UBERON_0006843) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HBA:9299" -### anterior median eminence `http://purl.obolibrary.org/obo/UBERON_0002648` +### root of vagus nerve `http://purl.obolibrary.org/obo/UBERON_0011213` #### Added -- [anterior median eminence](http://purl.obolibrary.org/obo/UBERON_0002648) SubClassOf [reproductive structure](http://purl.obolibrary.org/obo/UBERON_0005156) +- [root of vagus nerve](http://purl.obolibrary.org/obo/UBERON_0011213) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HBA:9337" -### arachnoid trabecula `http://purl.obolibrary.org/obo/UBERON_0000439` +### round ligament of liver `http://purl.obolibrary.org/obo/UBERON_0006588` #### Removed -- [arachnoid trabecula](http://purl.obolibrary.org/obo/UBERON_0000439) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [round ligament of liver](http://purl.obolibrary.org/obo/UBERON_0006588) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [round ligament of liver](http://purl.obolibrary.org/obo/UBERON_0006588) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +#### Added +- [round ligament of liver](http://purl.obolibrary.org/obo/UBERON_0006588) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### arterial system `http://purl.obolibrary.org/obo/UBERON_0004572` -#### Removed -- [arterial system](http://purl.obolibrary.org/obo/UBERON_0004572) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [round ligament of liver](http://purl.obolibrary.org/obo/UBERON_0006588) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [round ligament of liver](http://purl.obolibrary.org/obo/UBERON_0006588) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [round ligament of liver](http://purl.obolibrary.org/obo/UBERON_0006588) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### arthropod neurohemal organ `http://purl.obolibrary.org/obo/UBERON_0001053` -#### Removed -- [arthropod neurohemal organ](http://purl.obolibrary.org/obo/UBERON_0001053) SubClassOf [endocrine gland](http://purl.obolibrary.org/obo/UBERON_0002368) + +### sacral nerve `http://purl.obolibrary.org/obo/UBERON_0009625` #### Added -- [arthropod neurohemal organ](http://purl.obolibrary.org/obo/UBERON_0001053) SubClassOf [neuroendocrine gland](http://purl.obolibrary.org/obo/UBERON_0010133) +- [sacral nerve](http://purl.obolibrary.org/obo/UBERON_0009625) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [sacral nerve](http://purl.obolibrary.org/obo/UBERON_0009625) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### basement membrane of epithelium `http://purl.obolibrary.org/obo/UBERON_0005769` -#### Removed -- [basement membrane of epithelium](http://purl.obolibrary.org/obo/UBERON_0005769) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### saphenous nerve `http://purl.obolibrary.org/obo/UBERON_0002475` + +#### Added +- [saphenous nerve](http://purl.obolibrary.org/obo/UBERON_0002475) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [saphenous nerve](http://purl.obolibrary.org/obo/UBERON_0002475) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### biliary system `http://purl.obolibrary.org/obo/UBERON_0002294` +### segmental bronchus `http://purl.obolibrary.org/obo/UBERON_0002184` #### Removed -- [biliary system](http://purl.obolibrary.org/obo/UBERON_0002294) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [segmental bronchus](http://purl.obolibrary.org/obo/UBERON_0002184) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [segmental bronchus](http://purl.obolibrary.org/obo/UBERON_0002184) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +#### Added +- [segmental bronchus](http://purl.obolibrary.org/obo/UBERON_0002184) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### biliary tree `http://purl.obolibrary.org/obo/UBERON_0001173` -#### Removed -- [biliary tree](http://purl.obolibrary.org/obo/UBERON_0001173) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [segmental bronchus](http://purl.obolibrary.org/obo/UBERON_0002184) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [segmental bronchus](http://purl.obolibrary.org/obo/UBERON_0002184) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [segmental bronchus](http://purl.obolibrary.org/obo/UBERON_0002184) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### blood `http://purl.obolibrary.org/obo/UBERON_0000178` -#### Removed -- [blood](http://purl.obolibrary.org/obo/UBERON_0000178) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [segmental bronchus](http://purl.obolibrary.org/obo/UBERON_0002184) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [segmental bronchus](http://purl.obolibrary.org/obo/UBERON_0002184) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [segmental bronchus](http://purl.obolibrary.org/obo/UBERON_0002184) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### blood clot `http://purl.obolibrary.org/obo/UBERON_0010210` + +### seminal vesicle `http://purl.obolibrary.org/obo/UBERON_0000998` #### Removed -- [blood clot](http://purl.obolibrary.org/obo/UBERON_0010210) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [seminal vesicle](http://purl.obolibrary.org/obo/UBERON_0000998) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +#### Added +- [seminal vesicle](http://purl.obolibrary.org/obo/UBERON_0000998) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [seminal vesicle](http://purl.obolibrary.org/obo/UBERON_0000998) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### blood plasma `http://purl.obolibrary.org/obo/UBERON_0001969` -#### Removed -- [blood plasma](http://purl.obolibrary.org/obo/UBERON_0001969) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### short ciliary nerve `http://purl.obolibrary.org/obo/UBERON_0022302` +#### Added +- [short ciliary nerve](http://purl.obolibrary.org/obo/UBERON_0022302) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### blood sinus of vibrissa `http://purl.obolibrary.org/obo/UBERON_0034941` -#### Removed -- [blood sinus of vibrissa](http://purl.obolibrary.org/obo/UBERON_0034941) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [short ciliary nerve](http://purl.obolibrary.org/obo/UBERON_0022302) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### short descending thin limb `http://purl.obolibrary.org/obo/UBERON_0005099` -### blood vasculature `http://purl.obolibrary.org/obo/UBERON_0004537` -#### Removed -- [blood vasculature](http://purl.obolibrary.org/obo/UBERON_0004537) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +#### Added +- [short descending thin limb](http://purl.obolibrary.org/obo/UBERON_0005099) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [short descending thin limb](http://purl.obolibrary.org/obo/UBERON_0005099) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### blood vessel `http://purl.obolibrary.org/obo/UBERON_0001981` +### sigmoid artery `http://purl.obolibrary.org/obo/UBERON_0035180` #### Removed -- [blood vessel](http://purl.obolibrary.org/obo/UBERON_0001981) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [sigmoid artery](http://purl.obolibrary.org/obo/UBERON_0035180) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [sigmoid artery](http://purl.obolibrary.org/obo/UBERON_0035180) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +#### Added +- [sigmoid artery](http://purl.obolibrary.org/obo/UBERON_0035180) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### blood vessel layer of choroid `http://purl.obolibrary.org/obo/UBERON_0013399` -#### Removed -- [blood vessel layer of choroid](http://purl.obolibrary.org/obo/UBERON_0013399) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [sigmoid artery](http://purl.obolibrary.org/obo/UBERON_0035180) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [sigmoid artery](http://purl.obolibrary.org/obo/UBERON_0035180) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [sigmoid artery](http://purl.obolibrary.org/obo/UBERON_0035180) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [sigmoid artery](http://purl.obolibrary.org/obo/UBERON_0035180) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### capillary layer of choroid `http://purl.obolibrary.org/obo/UBERON_0005336` +### sigmoid colon `http://purl.obolibrary.org/obo/UBERON_0001159` #### Removed -- [capillary layer of choroid](http://purl.obolibrary.org/obo/UBERON_0005336) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [sigmoid colon](http://purl.obolibrary.org/obo/UBERON_0001159) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [sigmoid colon](http://purl.obolibrary.org/obo/UBERON_0001159) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +#### Added +- [sigmoid colon](http://purl.obolibrary.org/obo/UBERON_0001159) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### capsule of lens `http://purl.obolibrary.org/obo/UBERON_0001804` -#### Removed -- [capsule of lens](http://purl.obolibrary.org/obo/UBERON_0001804) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [sigmoid colon](http://purl.obolibrary.org/obo/UBERON_0001159) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [sigmoid colon](http://purl.obolibrary.org/obo/UBERON_0001159) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [sigmoid colon](http://purl.obolibrary.org/obo/UBERON_0001159) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### capsule of liver `http://purl.obolibrary.org/obo/UBERON_0016479` -#### Removed -- [capsule of liver](http://purl.obolibrary.org/obo/UBERON_0016479) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [sigmoid colon](http://purl.obolibrary.org/obo/UBERON_0001159) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [sigmoid colon](http://purl.obolibrary.org/obo/UBERON_0001159) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### capsule of parathyroid gland `http://purl.obolibrary.org/obo/UBERON_0001748` +### skin of body `http://purl.obolibrary.org/obo/UBERON_0002097` #### Removed -- [capsule of parathyroid gland](http://purl.obolibrary.org/obo/UBERON_0001748) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [skin of body](http://purl.obolibrary.org/obo/UBERON_0002097) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_M_Skin.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [skin of body](http://purl.obolibrary.org/obo/UBERON_0002097) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Skin.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [skin of body](http://purl.obolibrary.org/obo/UBERON_0002097) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Skin.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### cardia of stomach `http://purl.obolibrary.org/obo/UBERON_0001162` -#### Removed -- [cardia of stomach](http://purl.obolibrary.org/obo/UBERON_0001162) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [skin of body](http://purl.obolibrary.org/obo/UBERON_0002097) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-skin.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +#### Added +- [skin of body](http://purl.obolibrary.org/obo/UBERON_0002097) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/skin-female/v1.3/assets/3d-vh-f-skin.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [skin of body](http://purl.obolibrary.org/obo/UBERON_0002097) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/skin-female/v1.2/assets/VH_F_Skin.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### cardiovascular system `http://purl.obolibrary.org/obo/UBERON_0004535` -#### Removed -- [cardiovascular system](http://purl.obolibrary.org/obo/UBERON_0004535) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [skin of body](http://purl.obolibrary.org/obo/UBERON_0002097) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/skin-female/v1.1/assets/VH_F_Skin.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [skin of body](http://purl.obolibrary.org/obo/UBERON_0002097) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/skin-male/v1.2/assets/VH_M_Skin.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [skin of body](http://purl.obolibrary.org/obo/UBERON_0002097) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/skin-female/v1.0/assets/VH_F_Skin.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### cartilage of bronchus `http://purl.obolibrary.org/obo/UBERON_0001956` -#### Removed -- [cartilage of bronchus](http://purl.obolibrary.org/obo/UBERON_0001956) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [skin of body](http://purl.obolibrary.org/obo/UBERON_0002097) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/skin-male/v1.1/assets/VH_M_Skin.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [skin of body](http://purl.obolibrary.org/obo/UBERON_0002097) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/skin-male/v1.0/assets/VH_M_Skin.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### choroid plexus stroma `http://purl.obolibrary.org/obo/UBERON_0005206` +### small cardiac vein `http://purl.obolibrary.org/obo/UBERON_0035374` #### Removed -- [choroid plexus stroma](http://purl.obolibrary.org/obo/UBERON_0005206) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [small cardiac vein](http://purl.obolibrary.org/obo/UBERON_0035374) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [small cardiac vein](http://purl.obolibrary.org/obo/UBERON_0035374) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +#### Added +- [small cardiac vein](http://purl.obolibrary.org/obo/UBERON_0035374) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### collagen and cuticulin-based cuticle `http://purl.obolibrary.org/obo/UBERON_0003049` -#### Removed -- [collagen and cuticulin-based cuticle](http://purl.obolibrary.org/obo/UBERON_0003049) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [small cardiac vein](http://purl.obolibrary.org/obo/UBERON_0035374) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [small cardiac vein](http://purl.obolibrary.org/obo/UBERON_0035374) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [small cardiac vein](http://purl.obolibrary.org/obo/UBERON_0035374) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### collection of collagen fibrils `http://purl.obolibrary.org/obo/UBERON_0011860` -#### Removed -- [collection of collagen fibrils](http://purl.obolibrary.org/obo/UBERON_0011860) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [small cardiac vein](http://purl.obolibrary.org/obo/UBERON_0035374) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [small cardiac vein](http://purl.obolibrary.org/obo/UBERON_0035374) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### colloid of thyroid follicle `http://purl.obolibrary.org/obo/UBERON_0012364` +### small intestine `http://purl.obolibrary.org/obo/UBERON_0002108` #### Removed -- [colloid of thyroid follicle](http://purl.obolibrary.org/obo/UBERON_0012364) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [small intestine](http://purl.obolibrary.org/obo/UBERON_0002108) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Small_Intestine.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [small intestine](http://purl.obolibrary.org/obo/UBERON_0002108) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Small_Intestine.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +#### Added +- [small intestine](http://purl.obolibrary.org/obo/UBERON_0002108) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.0/assets/VH_M_Small_Intestine.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### core of melon organ `http://purl.obolibrary.org/obo/UBERON_0013182` -#### Removed -- [core of melon organ](http://purl.obolibrary.org/obo/UBERON_0013182) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [small intestine](http://purl.obolibrary.org/obo/UBERON_0002108) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.1/assets/VH_M_Small_Intestine.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [small intestine](http://purl.obolibrary.org/obo/UBERON_0002108) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-female/v1.1/assets/VH_F_Small_Intestine.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### cornea `http://purl.obolibrary.org/obo/UBERON_0000964` +### spinal cord `http://purl.obolibrary.org/obo/UBERON_0002240` #### Removed -- [cornea](http://purl.obolibrary.org/obo/UBERON_0000964) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [spinal cord](http://purl.obolibrary.org/obo/UBERON_0002240) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [spinal cord](http://purl.obolibrary.org/obo/UBERON_0002240) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +#### Added +- [spinal cord](http://purl.obolibrary.org/obo/UBERON_0002240) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### corpus luteum `http://purl.obolibrary.org/obo/UBERON_0002512` +- [spinal cord](http://purl.obolibrary.org/obo/UBERON_0002240) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -#### Added -- [corpus luteum](http://purl.obolibrary.org/obo/UBERON_0002512) SubClassOf [female reproductive organ](http://purl.obolibrary.org/obo/UBERON_0003134) +### spinal nerve plexus `http://purl.obolibrary.org/obo/UBERON_0001813` -### cortex of thymus `http://purl.obolibrary.org/obo/UBERON_0002123` -#### Removed -- [cortex of thymus](http://purl.obolibrary.org/obo/UBERON_0002123) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +#### Added +- [spinal nerve plexus](http://purl.obolibrary.org/obo/UBERON_0001813) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [spinal nerve plexus](http://purl.obolibrary.org/obo/UBERON_0001813) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### cricoid cartilage `http://purl.obolibrary.org/obo/UBERON_0002375` -#### Removed -- [cricoid cartilage](http://purl.obolibrary.org/obo/UBERON_0002375) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### spinal nerve root `http://purl.obolibrary.org/obo/UBERON_0009623` +#### Added +- [spinal nerve root](http://purl.obolibrary.org/obo/UBERON_0009623) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [spinal nerve root](http://purl.obolibrary.org/obo/UBERON_0009623) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### dense connective tissue `http://purl.obolibrary.org/obo/UBERON_0011823` -#### Removed -- [dense connective tissue](http://purl.obolibrary.org/obo/UBERON_0011823) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### spinal nerve trunk `http://purl.obolibrary.org/obo/UBERON_0005476` +#### Added +- [spinal nerve trunk](http://purl.obolibrary.org/obo/UBERON_0005476) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### dermatological-muscosal system `http://purl.obolibrary.org/obo/UBERON_0012125` -#### Removed -- [dermatological-muscosal system](http://purl.obolibrary.org/obo/UBERON_0012125) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [spinal nerve trunk](http://purl.obolibrary.org/obo/UBERON_0005476) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +### splanchnic nerve `http://purl.obolibrary.org/obo/UBERON_0003715` -### dermis `http://purl.obolibrary.org/obo/UBERON_0002067` -#### Removed -- [dermis](http://purl.obolibrary.org/obo/UBERON_0002067) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +#### Added +- [splanchnic nerve](http://purl.obolibrary.org/obo/UBERON_0003715) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [splanchnic nerve](http://purl.obolibrary.org/obo/UBERON_0003715) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### duct `http://purl.obolibrary.org/obo/UBERON_0000058` +### spleen `http://purl.obolibrary.org/obo/UBERON_0002106` #### Removed -- [duct](http://purl.obolibrary.org/obo/UBERON_0000058) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [spleen](http://purl.obolibrary.org/obo/UBERON_0002106) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spleen.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [spleen](http://purl.obolibrary.org/obo/UBERON_0002106) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spleen.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [spleen](http://purl.obolibrary.org/obo/UBERON_0002106) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Spleen.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### ductal plate `http://purl.obolibrary.org/obo/UBERON_8410003` -#### Removed -- [ductal plate](http://purl.obolibrary.org/obo/UBERON_8410003) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +#### Added +- [spleen](http://purl.obolibrary.org/obo/UBERON_0002106) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-female/v1.1/assets/VH_F_Spleen.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [spleen](http://purl.obolibrary.org/obo/UBERON_0002106) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-male/v1.2/assets/VH_M_Spleen.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [spleen](http://purl.obolibrary.org/obo/UBERON_0002106) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-female/v1.2/assets/VH_F_Spleen.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### ectocervix `http://purl.obolibrary.org/obo/UBERON_0012249` -#### Removed -- [ectocervix](http://purl.obolibrary.org/obo/UBERON_0012249) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [spleen](http://purl.obolibrary.org/obo/UBERON_0002106) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-male/v1.0/assets/VH_M_Spleen.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [spleen](http://purl.obolibrary.org/obo/UBERON_0002106) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-female/v1.0/assets/VH_F_Spleen.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [spleen](http://purl.obolibrary.org/obo/UBERON_0002106) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-male/v1.1/assets/VH_M_Spleen.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### endocervix `http://purl.obolibrary.org/obo/UBERON_0000458` +### splenic artery `http://purl.obolibrary.org/obo/UBERON_0001194` #### Removed -- [endocervix](http://purl.obolibrary.org/obo/UBERON_0000458) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [splenic artery](http://purl.obolibrary.org/obo/UBERON_0001194) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [splenic artery](http://purl.obolibrary.org/obo/UBERON_0001194) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +#### Added +- [splenic artery](http://purl.obolibrary.org/obo/UBERON_0001194) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### epiglottis `http://purl.obolibrary.org/obo/UBERON_0000388` -#### Removed -- [epiglottis](http://purl.obolibrary.org/obo/UBERON_0000388) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [splenic artery](http://purl.obolibrary.org/obo/UBERON_0001194) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [splenic artery](http://purl.obolibrary.org/obo/UBERON_0001194) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [splenic artery](http://purl.obolibrary.org/obo/UBERON_0001194) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### epithelium `http://purl.obolibrary.org/obo/UBERON_0000483` -#### Removed -- [epithelium](http://purl.obolibrary.org/obo/UBERON_0000483) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [splenic artery](http://purl.obolibrary.org/obo/UBERON_0001194) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [splenic artery](http://purl.obolibrary.org/obo/UBERON_0001194) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### exocrine gland `http://purl.obolibrary.org/obo/UBERON_0002365` +### splenic flexure of colon `http://purl.obolibrary.org/obo/UBERON_0022276` #### Removed -- [exocrine gland](http://purl.obolibrary.org/obo/UBERON_0002365) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [splenic flexure of colon](http://purl.obolibrary.org/obo/UBERON_0022276) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [splenic flexure of colon](http://purl.obolibrary.org/obo/UBERON_0022276) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +#### Added +- [splenic flexure of colon](http://purl.obolibrary.org/obo/UBERON_0022276) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### exocrine system `http://purl.obolibrary.org/obo/UBERON_0002330` -#### Removed -- [exocrine system](http://purl.obolibrary.org/obo/UBERON_0002330) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [splenic flexure of colon](http://purl.obolibrary.org/obo/UBERON_0022276) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [splenic flexure of colon](http://purl.obolibrary.org/obo/UBERON_0022276) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [splenic flexure of colon](http://purl.obolibrary.org/obo/UBERON_0022276) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### external soft tissue zone `http://purl.obolibrary.org/obo/UBERON_0034929` -#### Removed -- [external soft tissue zone](http://purl.obolibrary.org/obo/UBERON_0034929) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [splenic flexure of colon](http://purl.obolibrary.org/obo/UBERON_0022276) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [splenic flexure of colon](http://purl.obolibrary.org/obo/UBERON_0022276) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### feather bud `http://purl.obolibrary.org/obo/UBERON_0011802` +### splenic vein `http://purl.obolibrary.org/obo/UBERON_0003713` #### Removed -- [feather bud](http://purl.obolibrary.org/obo/UBERON_0011802) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [splenic vein](http://purl.obolibrary.org/obo/UBERON_0003713) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [splenic vein](http://purl.obolibrary.org/obo/UBERON_0003713) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +#### Added +- [splenic vein](http://purl.obolibrary.org/obo/UBERON_0003713) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### fibrocartilage `http://purl.obolibrary.org/obo/UBERON_0001995` -#### Removed -- [fibrocartilage](http://purl.obolibrary.org/obo/UBERON_0001995) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [splenic vein](http://purl.obolibrary.org/obo/UBERON_0003713) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [splenic vein](http://purl.obolibrary.org/obo/UBERON_0003713) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [splenic vein](http://purl.obolibrary.org/obo/UBERON_0003713) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### fibrocartilage enthesis `http://purl.obolibrary.org/obo/UBERON_0035847` -#### Removed -- [fibrocartilage enthesis](http://purl.obolibrary.org/obo/UBERON_0035847) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [splenic vein](http://purl.obolibrary.org/obo/UBERON_0003713) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [splenic vein](http://purl.obolibrary.org/obo/UBERON_0003713) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### fibrous enthesis `http://purl.obolibrary.org/obo/UBERON_0035846` +### subcallosal area `http://purl.obolibrary.org/obo/UBERON_0003020` #### Removed -- [fibrous enthesis](http://purl.obolibrary.org/obo/UBERON_0035846) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [subcallosal area](http://purl.obolibrary.org/obo/UBERON_0003020) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [subcallosal area](http://purl.obolibrary.org/obo/UBERON_0003020) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +#### Added +- [subcallosal area](http://purl.obolibrary.org/obo/UBERON_0003020) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [subcallosal area](http://purl.obolibrary.org/obo/UBERON_0003020) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### fibrous membrane of synovial tendon sheath `http://purl.obolibrary.org/obo/UBERON_0011234` -#### Removed -- [fibrous membrane of synovial tendon sheath](http://purl.obolibrary.org/obo/UBERON_0011234) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [subcallosal area](http://purl.obolibrary.org/obo/UBERON_0003020) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [subcallosal area](http://purl.obolibrary.org/obo/UBERON_0003020) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [subcallosal area](http://purl.obolibrary.org/obo/UBERON_0003020) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### fundus of stomach `http://purl.obolibrary.org/obo/UBERON_0001160` -#### Removed -- [fundus of stomach](http://purl.obolibrary.org/obo/UBERON_0001160) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [subcallosal area](http://purl.obolibrary.org/obo/UBERON_0003020) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +### submucous nerve plexus of colon `http://purl.obolibrary.org/obo/UBERON_8410059` -### gizzard `http://purl.obolibrary.org/obo/UBERON_0005052` -#### Removed -- [gizzard](http://purl.obolibrary.org/obo/UBERON_0005052) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +#### Added +- [submucous nerve plexus of colon](http://purl.obolibrary.org/obo/UBERON_8410059) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [submucous nerve plexus of colon](http://purl.obolibrary.org/obo/UBERON_8410059) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### glabella region `http://purl.obolibrary.org/obo/UBERON_0034766` +### substantia nigra `http://purl.obolibrary.org/obo/UBERON_0002038` #### Removed -- [glabella region](http://purl.obolibrary.org/obo/UBERON_0034766) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [substantia nigra](http://purl.obolibrary.org/obo/UBERON_0002038) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [substantia nigra](http://purl.obolibrary.org/obo/UBERON_0002038) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +#### Added +- [substantia nigra](http://purl.obolibrary.org/obo/UBERON_0002038) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### gonad `http://purl.obolibrary.org/obo/UBERON_0000991` -#### Removed -- [gonad](http://purl.obolibrary.org/obo/UBERON_0000991) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBbt:00004858" - - [mapping_justification](https://w3id.org/sssom/mapping_justification) [ManualMappingCuration](https://w3id.org/semapv/vocab/ManualMappingCuration) +- [substantia nigra](http://purl.obolibrary.org/obo/UBERON_0002038) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [substantia nigra](http://purl.obolibrary.org/obo/UBERON_0002038) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [substantia nigra](http://purl.obolibrary.org/obo/UBERON_0002038) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### hepatobiliary system `http://purl.obolibrary.org/obo/UBERON_0002423` -#### Removed -- [hepatobiliary system](http://purl.obolibrary.org/obo/UBERON_0002423) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [substantia nigra](http://purl.obolibrary.org/obo/UBERON_0002038) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [substantia nigra](http://purl.obolibrary.org/obo/UBERON_0002038) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### hump `http://purl.obolibrary.org/obo/UBERON_0013657` +### superior colliculus `http://purl.obolibrary.org/obo/UBERON_0001945` #### Removed -- [hump](http://purl.obolibrary.org/obo/UBERON_0013657) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [superior colliculus](http://purl.obolibrary.org/obo/UBERON_0001945) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [superior colliculus](http://purl.obolibrary.org/obo/UBERON_0001945) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +#### Added +- [superior colliculus](http://purl.obolibrary.org/obo/UBERON_0001945) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### hyaline cartilage tissue `http://purl.obolibrary.org/obo/UBERON_0001994` -#### Removed -- [hyaline cartilage tissue](http://purl.obolibrary.org/obo/UBERON_0001994) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [superior colliculus](http://purl.obolibrary.org/obo/UBERON_0001945) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [superior colliculus](http://purl.obolibrary.org/obo/UBERON_0001945) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [superior colliculus](http://purl.obolibrary.org/obo/UBERON_0001945) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### hypodermis `http://purl.obolibrary.org/obo/UBERON_0002072` -#### Removed -- [hypodermis](http://purl.obolibrary.org/obo/UBERON_0002072) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [superior colliculus](http://purl.obolibrary.org/obo/UBERON_0001945) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [superior colliculus](http://purl.obolibrary.org/obo/UBERON_0001945) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### infundibular organ `http://purl.obolibrary.org/obo/UBERON_0011358` +### superior frontal gyrus `http://purl.obolibrary.org/obo/UBERON_0002661` #### Removed -- [infundibular organ](http://purl.obolibrary.org/obo/UBERON_0011358) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [superior frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0002661) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [superior frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0002661) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +#### Added +- [superior frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0002661) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### inner cambium layer of periosteum `http://purl.obolibrary.org/obo/UBERON_0000312` -#### Removed -- [inner cambium layer of periosteum](http://purl.obolibrary.org/obo/UBERON_0000312) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [superior frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0002661) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [superior frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0002661) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [superior frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0002661) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### integument `http://purl.obolibrary.org/obo/UBERON_0002199` -#### Removed -- [integument](http://purl.obolibrary.org/obo/UBERON_0002199) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [superior frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0002661) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [superior frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0002661) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### integumental system `http://purl.obolibrary.org/obo/UBERON_0002416` -#### Removed -- [integumental system](http://purl.obolibrary.org/obo/UBERON_0002416) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### superior hypogastric nerve plexus `http://purl.obolibrary.org/obo/UBERON_0002013` +#### Added +- [superior hypogastric nerve plexus](http://purl.obolibrary.org/obo/UBERON_0002013) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [superior hypogastric nerve plexus](http://purl.obolibrary.org/obo/UBERON_0002013) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### intermediate part of hypophysis `http://purl.obolibrary.org/obo/UBERON_0023752` +### superior laryngeal nerve `http://purl.obolibrary.org/obo/UBERON_0011326` #### Added -- [intermediate part of hypophysis](http://purl.obolibrary.org/obo/UBERON_0023752) SubClassOf [reproductive structure](http://purl.obolibrary.org/obo/UBERON_0005156) +- [superior laryngeal nerve](http://purl.obolibrary.org/obo/UBERON_0011326) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [superior laryngeal nerve](http://purl.obolibrary.org/obo/UBERON_0011326) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### intervertebral disk `http://purl.obolibrary.org/obo/UBERON_0001066` + +### superior mesenteric artery `http://purl.obolibrary.org/obo/UBERON_0001182` #### Removed -- [intervertebral disk](http://purl.obolibrary.org/obo/UBERON_0001066) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [superior mesenteric artery](http://purl.obolibrary.org/obo/UBERON_0001182) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [superior mesenteric artery](http://purl.obolibrary.org/obo/UBERON_0001182) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +#### Added +- [superior mesenteric artery](http://purl.obolibrary.org/obo/UBERON_0001182) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### intestinal villus `http://purl.obolibrary.org/obo/UBERON_0001213` -#### Removed -- [intestinal villus](http://purl.obolibrary.org/obo/UBERON_0001213) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [superior mesenteric artery](http://purl.obolibrary.org/obo/UBERON_0001182) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [superior mesenteric artery](http://purl.obolibrary.org/obo/UBERON_0001182) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [superior mesenteric artery](http://purl.obolibrary.org/obo/UBERON_0001182) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### juxtaglomerular apparatus `http://purl.obolibrary.org/obo/UBERON_0002303` -#### Removed -- [juxtaglomerular apparatus](http://purl.obolibrary.org/obo/UBERON_0002303) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [superior mesenteric artery](http://purl.obolibrary.org/obo/UBERON_0001182) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +### superior mesenteric plexus `http://purl.obolibrary.org/obo/UBERON_0005488` -### lamina of omasum `http://purl.obolibrary.org/obo/UBERON_0014510` -#### Removed -- [lamina of omasum](http://purl.obolibrary.org/obo/UBERON_0014510) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +#### Added +- [superior mesenteric plexus](http://purl.obolibrary.org/obo/UBERON_0005488) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [superior mesenteric plexus](http://purl.obolibrary.org/obo/UBERON_0005488) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### lateral eminence of hypophysis `http://purl.obolibrary.org/obo/UBERON_0027109` +### superior mesenteric vein `http://purl.obolibrary.org/obo/UBERON_0001138` #### Added -- [lateral eminence of hypophysis](http://purl.obolibrary.org/obo/UBERON_0027109) SubClassOf [reproductive structure](http://purl.obolibrary.org/obo/UBERON_0005156) +- [superior mesenteric vein](http://purl.obolibrary.org/obo/UBERON_0001138) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [superior mesenteric vein](http://purl.obolibrary.org/obo/UBERON_0001138) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### lymph node `http://purl.obolibrary.org/obo/UBERON_0000029` +- [superior mesenteric vein](http://purl.obolibrary.org/obo/UBERON_0001138) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### superior occipital gyrus `http://purl.obolibrary.org/obo/UBERON_0002948` #### Removed -- [lymph node](http://purl.obolibrary.org/obo/UBERON_0000029) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [superior occipital gyrus](http://purl.obolibrary.org/obo/UBERON_0002948) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [superior occipital gyrus](http://purl.obolibrary.org/obo/UBERON_0002948) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +#### Added +- [superior occipital gyrus](http://purl.obolibrary.org/obo/UBERON_0002948) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### lymphocyte domain `http://purl.obolibrary.org/obo/UBERON_0010394` -#### Removed -- [lymphocyte domain](http://purl.obolibrary.org/obo/UBERON_0010394) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [superior occipital gyrus](http://purl.obolibrary.org/obo/UBERON_0002948) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [superior occipital gyrus](http://purl.obolibrary.org/obo/UBERON_0002948) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [superior occipital gyrus](http://purl.obolibrary.org/obo/UBERON_0002948) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### lymphoid tissue `http://purl.obolibrary.org/obo/UBERON_0001744` -#### Removed -- [lymphoid tissue](http://purl.obolibrary.org/obo/UBERON_0001744) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [superior occipital gyrus](http://purl.obolibrary.org/obo/UBERON_0002948) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [superior occipital gyrus](http://purl.obolibrary.org/obo/UBERON_0002948) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### male bulbospongiosus muscle `http://purl.obolibrary.org/obo/UBERON_0011388` +### superior rectal artery `http://purl.obolibrary.org/obo/UBERON_0035040` #### Removed -- [male bulbospongiosus muscle](http://purl.obolibrary.org/obo/UBERON_0011388) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [male reproductive system](http://purl.obolibrary.org/obo/UBERON_0000079) +- [superior rectal artery](http://purl.obolibrary.org/obo/UBERON_0035040) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -- [male bulbospongiosus muscle](http://purl.obolibrary.org/obo/UBERON_0011388) SubClassOf [reproductive structure](http://purl.obolibrary.org/obo/UBERON_0005156) +- [superior rectal artery](http://purl.obolibrary.org/obo/UBERON_0035040) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) #### Added -- [male bulbospongiosus muscle](http://purl.obolibrary.org/obo/UBERON_0011388) SubClassOf [male reproductive organ](http://purl.obolibrary.org/obo/UBERON_0003135) +- [superior rectal artery](http://purl.obolibrary.org/obo/UBERON_0035040) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [superior rectal artery](http://purl.obolibrary.org/obo/UBERON_0035040) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### median eminence of neurohypophysis `http://purl.obolibrary.org/obo/UBERON_0002197` +- [superior rectal artery](http://purl.obolibrary.org/obo/UBERON_0035040) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -#### Added -- [median eminence of neurohypophysis](http://purl.obolibrary.org/obo/UBERON_0002197) SubClassOf [reproductive gland](http://purl.obolibrary.org/obo/UBERON_0003937) +- [superior rectal artery](http://purl.obolibrary.org/obo/UBERON_0035040) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [superior rectal artery](http://purl.obolibrary.org/obo/UBERON_0035040) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### median pars intermedia `http://purl.obolibrary.org/obo/UBERON_3010541` +### superior temporal gyrus `http://purl.obolibrary.org/obo/UBERON_0002769` +#### Removed +- [superior temporal gyrus](http://purl.obolibrary.org/obo/UBERON_0002769) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [superior temporal gyrus](http://purl.obolibrary.org/obo/UBERON_0002769) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) #### Added -- [median pars intermedia](http://purl.obolibrary.org/obo/UBERON_3010541) SubClassOf [reproductive structure](http://purl.obolibrary.org/obo/UBERON_0005156) +- [superior temporal gyrus](http://purl.obolibrary.org/obo/UBERON_0002769) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [superior temporal gyrus](http://purl.obolibrary.org/obo/UBERON_0002769) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### melon organ `http://purl.obolibrary.org/obo/UBERON_0008960` -#### Removed -- [melon organ](http://purl.obolibrary.org/obo/UBERON_0008960) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [superior temporal gyrus](http://purl.obolibrary.org/obo/UBERON_0002769) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [superior temporal gyrus](http://purl.obolibrary.org/obo/UBERON_0002769) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [superior temporal gyrus](http://purl.obolibrary.org/obo/UBERON_0002769) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### membrane organ `http://purl.obolibrary.org/obo/UBERON_0000094` -#### Removed -- [membrane organ](http://purl.obolibrary.org/obo/UBERON_0000094) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [superior temporal gyrus](http://purl.obolibrary.org/obo/UBERON_0002769) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +### superior vagus X ganglion `http://purl.obolibrary.org/obo/UBERON_0005364` -### meningeal cluster `http://purl.obolibrary.org/obo/UBERON_0010743` -#### Removed -- [meningeal cluster](http://purl.obolibrary.org/obo/UBERON_0010743) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +#### Added +- [superior vagus X ganglion](http://purl.obolibrary.org/obo/UBERON_0005364) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [superior vagus X ganglion](http://purl.obolibrary.org/obo/UBERON_0005364) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### meniscus `http://purl.obolibrary.org/obo/UBERON_0000387` -#### Removed -- [meniscus](http://purl.obolibrary.org/obo/UBERON_0000387) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### synonym that is inappropriate for amniotes `http://purl.obolibrary.org/obo/uberon/core#NON_AMNIOTE` +#### Added +- [synonym that is inappropriate for amniotes](http://purl.obolibrary.org/obo/uberon/core#NON_AMNIOTE) SubPropertyOf: [SynonymTypeProperty](http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty) -### milk `http://purl.obolibrary.org/obo/UBERON_0001913` -#### Removed -- [milk](http://purl.obolibrary.org/obo/UBERON_0001913) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### synonym that is inappropriate for mammals `http://purl.obolibrary.org/obo/uberon/core#NON_MAMMAL` +#### Added +- [synonym that is inappropriate for mammals](http://purl.obolibrary.org/obo/uberon/core#NON_MAMMAL) SubPropertyOf: [SynonymTypeProperty](http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty) -### mucosa `http://purl.obolibrary.org/obo/UBERON_0000344` +### tail of pancreas `http://purl.obolibrary.org/obo/UBERON_0001151` #### Removed -- [mucosa](http://purl.obolibrary.org/obo/UBERON_0000344) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [tail of pancreas](http://purl.obolibrary.org/obo/UBERON_0001151) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [tail of pancreas](http://purl.obolibrary.org/obo/UBERON_0001151) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +#### Added +- [tail of pancreas](http://purl.obolibrary.org/obo/UBERON_0001151) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.2/assets/3d-vh-f-pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### navicular fossa of spongiose part of urethra `http://purl.obolibrary.org/obo/UBERON_0012294` -#### Removed -- [navicular fossa of spongiose part of urethra](http://purl.obolibrary.org/obo/UBERON_0012294) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [tail of pancreas](http://purl.obolibrary.org/obo/UBERON_0001151) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.0/assets/VH_M_Pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [tail of pancreas](http://purl.obolibrary.org/obo/UBERON_0001151) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.1/assets/VH_F_Pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [tail of pancreas](http://purl.obolibrary.org/obo/UBERON_0001151) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.0/assets/VH_F_Pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### neural lobe of neurohypophysis `http://purl.obolibrary.org/obo/UBERON_0003217` +- [tail of pancreas](http://purl.obolibrary.org/obo/UBERON_0001151) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.1/assets/VH_M_Pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -#### Added -- [neural lobe of neurohypophysis](http://purl.obolibrary.org/obo/UBERON_0003217) SubClassOf [reproductive structure](http://purl.obolibrary.org/obo/UBERON_0005156) +- [tail of pancreas](http://purl.obolibrary.org/obo/UBERON_0001151) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.2/assets/3d-vh-m-pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### neurohypophysis `http://purl.obolibrary.org/obo/UBERON_0002198` +### taxonomic disambiguation `http://purl.obolibrary.org/obo/uberon/core#SENSU` #### Added -- [neurohypophysis](http://purl.obolibrary.org/obo/UBERON_0002198) SubClassOf [reproductive gland](http://purl.obolibrary.org/obo/UBERON_0003937) +- [taxonomic disambiguation](http://purl.obolibrary.org/obo/uberon/core#SENSU) SubPropertyOf: [SynonymTypeProperty](http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty) -### nucleus pulposus `http://purl.obolibrary.org/obo/UBERON_0002242` +### temporal pole `http://purl.obolibrary.org/obo/UBERON_0002576` #### Removed -- [nucleus pulposus](http://purl.obolibrary.org/obo/UBERON_0002242) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) - +- [temporal pole](http://purl.obolibrary.org/obo/UBERON_0002576) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [temporal pole](http://purl.obolibrary.org/obo/UBERON_0002576) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### open tracheal system trachea `http://purl.obolibrary.org/obo/UBERON_0003127` -#### Removed -- [open tracheal system trachea](http://purl.obolibrary.org/obo/UBERON_0003127) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +#### Added +- [temporal pole](http://purl.obolibrary.org/obo/UBERON_0002576) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [temporal pole](http://purl.obolibrary.org/obo/UBERON_0002576) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [temporal pole](http://purl.obolibrary.org/obo/UBERON_0002576) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### outer fibrous layer of periosteum `http://purl.obolibrary.org/obo/UBERON_0009858` -#### Removed -- [outer fibrous layer of periosteum](http://purl.obolibrary.org/obo/UBERON_0009858) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [temporal pole](http://purl.obolibrary.org/obo/UBERON_0002576) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [temporal pole](http://purl.obolibrary.org/obo/UBERON_0002576) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [temporal pole](http://purl.obolibrary.org/obo/UBERON_0002576) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### pair of dorsal aortae `http://purl.obolibrary.org/obo/UBERON_0010190` -#### Removed -- [pair of dorsal aortae](http://purl.obolibrary.org/obo/UBERON_0010190) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### thoracic nerve `http://purl.obolibrary.org/obo/UBERON_0003726` +#### Added +- [thoracic nerve](http://purl.obolibrary.org/obo/UBERON_0003726) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### paired limb/fin `http://purl.obolibrary.org/obo/UBERON_0004708` -#### Removed -- [paired limb/fin](http://purl.obolibrary.org/obo/UBERON_0004708) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [thoracic nerve](http://purl.obolibrary.org/obo/UBERON_0003726) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +### thoracic splanchnic nerve `http://purl.obolibrary.org/obo/UBERON_0018679` -### pancreatic lobule `http://purl.obolibrary.org/obo/UBERON_0007324` -#### Removed -- [pancreatic lobule](http://purl.obolibrary.org/obo/UBERON_0007324) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +#### Added +- [thoracic splanchnic nerve](http://purl.obolibrary.org/obo/UBERON_0018679) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [thoracic splanchnic nerve](http://purl.obolibrary.org/obo/UBERON_0018679) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### papillary layer of dermis `http://purl.obolibrary.org/obo/UBERON_0001992` +### thymus `http://purl.obolibrary.org/obo/UBERON_0002370` #### Removed -- [papillary layer of dermis](http://purl.obolibrary.org/obo/UBERON_0001992) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [thymus](http://purl.obolibrary.org/obo/UBERON_0002370) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Thymus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [thymus](http://purl.obolibrary.org/obo/UBERON_0002370) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Thymus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [thymus](http://purl.obolibrary.org/obo/UBERON_0002370) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Thymus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### parenchyma of thyroid gland `http://purl.obolibrary.org/obo/UBERON_0001747` -#### Removed -- [parenchyma of thyroid gland](http://purl.obolibrary.org/obo/UBERON_0001747) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +#### Added +- [thymus](http://purl.obolibrary.org/obo/UBERON_0002370) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.2/assets/VH_M_Thymus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [thymus](http://purl.obolibrary.org/obo/UBERON_0002370) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.0/assets/VH_M_Thymus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [thymus](http://purl.obolibrary.org/obo/UBERON_0002370) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.0/assets/VH_F_Thymus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### pars distalis of adenohypophysis `http://purl.obolibrary.org/obo/UBERON_0006964` +- [thymus](http://purl.obolibrary.org/obo/UBERON_0002370) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.2/assets/VH_F_Thymus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -#### Added -- [pars distalis of adenohypophysis](http://purl.obolibrary.org/obo/UBERON_0006964) SubClassOf [reproductive structure](http://purl.obolibrary.org/obo/UBERON_0005156) +- [thymus](http://purl.obolibrary.org/obo/UBERON_0002370) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.1/assets/VH_F_Thymus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [thymus](http://purl.obolibrary.org/obo/UBERON_0002370) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.1/assets/VH_M_Thymus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### pars intermedia of adenohypophysis `http://purl.obolibrary.org/obo/UBERON_0002432` + +### thyroepiglotticus muscle `http://purl.obolibrary.org/obo/UBERON_0010927` #### Added -- [pars intermedia of adenohypophysis](http://purl.obolibrary.org/obo/UBERON_0002432) SubClassOf [reproductive structure](http://purl.obolibrary.org/obo/UBERON_0005156) +- [thyroepiglotticus muscle](http://purl.obolibrary.org/obo/UBERON_0010927) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [thyroepiglotticus muscle](http://purl.obolibrary.org/obo/UBERON_0010927) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### pars tuberalis of adenohypophysis `http://purl.obolibrary.org/obo/UBERON_0002433` +### thyroid cartilage `http://purl.obolibrary.org/obo/UBERON_0001738` +#### Removed +- [thyroid cartilage](http://purl.obolibrary.org/obo/UBERON_0001738) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-larynx.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [thyroid cartilage](http://purl.obolibrary.org/obo/UBERON_0001738) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-larynx.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) #### Added -- [pars tuberalis of adenohypophysis](http://purl.obolibrary.org/obo/UBERON_0002433) SubClassOf [reproductive structure](http://purl.obolibrary.org/obo/UBERON_0005156) +- [thyroid cartilage](http://purl.obolibrary.org/obo/UBERON_0001738) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.0/assets/3d-vh-f-larynx.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [thyroid cartilage](http://purl.obolibrary.org/obo/UBERON_0001738) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.0/assets/3d-vh-m-larynx.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### pericardium `http://purl.obolibrary.org/obo/UBERON_0002407` + +### tonsil `http://purl.obolibrary.org/obo/UBERON_0002372` #### Removed -- [pericardium](http://purl.obolibrary.org/obo/UBERON_0002407) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [tonsil](http://purl.obolibrary.org/obo/UBERON_0002372) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [tonsil](http://purl.obolibrary.org/obo/UBERON_0002372) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### periorbital region `http://purl.obolibrary.org/obo/UBERON_0004090` +### trabecular bone tissue `http://purl.obolibrary.org/obo/UBERON_0002483` #### Removed -- [periorbital region](http://purl.obolibrary.org/obo/UBERON_0004090) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [trabecular bone tissue](http://purl.obolibrary.org/obo/UBERON_0002483) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [trabecular bone tissue](http://purl.obolibrary.org/obo/UBERON_0002483) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +#### Added +- [trabecular bone tissue](http://purl.obolibrary.org/obo/UBERON_0002483) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.2/assets/VH_F_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### periosteum `http://purl.obolibrary.org/obo/UBERON_0002515` -#### Removed -- [periosteum](http://purl.obolibrary.org/obo/UBERON_0002515) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [trabecular bone tissue](http://purl.obolibrary.org/obo/UBERON_0002483) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.0/assets/VH_F_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [trabecular bone tissue](http://purl.obolibrary.org/obo/UBERON_0002483) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.2/assets/VH_M_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [trabecular bone tissue](http://purl.obolibrary.org/obo/UBERON_0002483) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.1/assets/VH_M_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### pharyngotympanic tube `http://purl.obolibrary.org/obo/UBERON_0002393` -#### Removed -- [pharyngotympanic tube](http://purl.obolibrary.org/obo/UBERON_0002393) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [trabecular bone tissue](http://purl.obolibrary.org/obo/UBERON_0002483) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.0/assets/VH_M_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [trabecular bone tissue](http://purl.obolibrary.org/obo/UBERON_0002483) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.1/assets/VH_F_Pelvis.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### pilosebaceous unit `http://purl.obolibrary.org/obo/UBERON_0011932` +### trachea `http://purl.obolibrary.org/obo/UBERON_0003126` #### Removed -- [pilosebaceous unit](http://purl.obolibrary.org/obo/UBERON_0011932) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [trachea](http://purl.obolibrary.org/obo/UBERON_0003126) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-trachea.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [trachea](http://purl.obolibrary.org/obo/UBERON_0003126) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-trachea.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +#### Added +- [trachea](http://purl.obolibrary.org/obo/UBERON_0003126) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/trachea-female/v1.0/assets/3d-vh-f-trachea.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [trachea](http://purl.obolibrary.org/obo/UBERON_0003126) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.0/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### pituitary gland `http://purl.obolibrary.org/obo/UBERON_0000007` +- [trachea](http://purl.obolibrary.org/obo/UBERON_0003126) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -#### Added -- [pituitary gland](http://purl.obolibrary.org/obo/UBERON_0000007) SubClassOf [reproductive gland](http://purl.obolibrary.org/obo/UBERON_0003937) +- [trachea](http://purl.obolibrary.org/obo/UBERON_0003126) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/trachea-male/v1.0/assets/3d-vh-m-trachea.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [trachea](http://purl.obolibrary.org/obo/UBERON_0003126) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [trachea](http://purl.obolibrary.org/obo/UBERON_0003126) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -- [pituitary gland](http://purl.obolibrary.org/obo/UBERON_0000007) SubClassOf [reproductive organ](http://purl.obolibrary.org/obo/UBERON_0003133) +### trachea cartilage `http://purl.obolibrary.org/obo/UBERON_0003604` +#### Removed +- [trachea cartilage](http://purl.obolibrary.org/obo/UBERON_0003604) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-trachea.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### pituitary stalk `http://purl.obolibrary.org/obo/UBERON_0002434` +- [trachea cartilage](http://purl.obolibrary.org/obo/UBERON_0003604) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-trachea.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) #### Added -- [pituitary stalk](http://purl.obolibrary.org/obo/UBERON_0002434) SubClassOf [reproductive structure](http://purl.obolibrary.org/obo/UBERON_0005156) +- [trachea cartilage](http://purl.obolibrary.org/obo/UBERON_0003604) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/trachea-male/v1.0/assets/3d-vh-m-trachea.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [trachea cartilage](http://purl.obolibrary.org/obo/UBERON_0003604) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/trachea-female/v1.0/assets/3d-vh-f-trachea.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### portal triad `http://purl.obolibrary.org/obo/UBERON_0001279` -#### Removed -- [portal triad](http://purl.obolibrary.org/obo/UBERON_0001279) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### tracheobronchial tree `http://purl.obolibrary.org/obo/UBERON_0007196` + +#### Added +- [tracheobronchial tree](http://purl.obolibrary.org/obo/UBERON_0007196) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [tracheobronchial tree](http://purl.obolibrary.org/obo/UBERON_0007196) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### posterior incudal ligament `http://purl.obolibrary.org/obo/UBERON_0018155` +### transition zone of prostate `http://purl.obolibrary.org/obo/UBERON_8410025` #### Removed -- [posterior incudal ligament](http://purl.obolibrary.org/obo/UBERON_0018155) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [transition zone of prostate](http://purl.obolibrary.org/obo/UBERON_8410025) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [transition zone of prostate](http://purl.obolibrary.org/obo/UBERON_8410025) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [transition zone of prostate](http://purl.obolibrary.org/obo/UBERON_8410025) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### posterior median eminence `http://purl.obolibrary.org/obo/UBERON_0002652` +### transitively anteriorly connected to `http://purl.obolibrary.org/obo/uberon/core#transitively_anteriorly_connected_to` #### Added -- [posterior median eminence](http://purl.obolibrary.org/obo/UBERON_0002652) SubClassOf [reproductive structure](http://purl.obolibrary.org/obo/UBERON_0005156) +- Transitive: [transitively anteriorly connected to](http://purl.obolibrary.org/obo/uberon/core#transitively_anteriorly_connected_to) -### pulmonary lymphatic vessel `http://purl.obolibrary.org/obo/UBERON_0018227` -#### Removed -- [pulmonary lymphatic vessel](http://purl.obolibrary.org/obo/UBERON_0018227) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### transitively distally connected to `http://purl.obolibrary.org/obo/uberon/core#transitively_distally_connected_to` +#### Added +- Transitive: [transitively distally connected to](http://purl.obolibrary.org/obo/uberon/core#transitively_distally_connected_to) -### pulmonary part of lymphatic system `http://purl.obolibrary.org/obo/UBERON_0018226` -#### Removed -- [pulmonary part of lymphatic system](http://purl.obolibrary.org/obo/UBERON_0018226) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### transitively proximally connected to `http://purl.obolibrary.org/obo/uberon/core#transitively_proximally_connected_to` +#### Added +- Transitive: [transitively proximally connected to](http://purl.obolibrary.org/obo/uberon/core#transitively_proximally_connected_to) -### pulmonary vascular system `http://purl.obolibrary.org/obo/UBERON_0008886` -#### Removed -- [pulmonary vascular system](http://purl.obolibrary.org/obo/UBERON_0008886) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### transitively_connected to `http://purl.obolibrary.org/obo/uberon/core#transitively_connected_to` +#### Added +- Transitive: [transitively_connected to](http://purl.obolibrary.org/obo/uberon/core#transitively_connected_to) -### pylorus `http://purl.obolibrary.org/obo/UBERON_0001166` +### transverse colon `http://purl.obolibrary.org/obo/UBERON_0001157` #### Removed -- [pylorus](http://purl.obolibrary.org/obo/UBERON_0001166) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [transverse colon](http://purl.obolibrary.org/obo/UBERON_0001157) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [transverse colon](http://purl.obolibrary.org/obo/UBERON_0001157) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +#### Added +- [transverse colon](http://purl.obolibrary.org/obo/UBERON_0001157) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### red pulp of spleen `http://purl.obolibrary.org/obo/UBERON_0001250` -#### Removed -- [red pulp of spleen](http://purl.obolibrary.org/obo/UBERON_0001250) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [transverse colon](http://purl.obolibrary.org/obo/UBERON_0001157) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [transverse colon](http://purl.obolibrary.org/obo/UBERON_0001157) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [transverse colon](http://purl.obolibrary.org/obo/UBERON_0001157) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### regular connective tissue `http://purl.obolibrary.org/obo/UBERON_0007845` -#### Removed -- [regular connective tissue](http://purl.obolibrary.org/obo/UBERON_0007845) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [transverse colon](http://purl.obolibrary.org/obo/UBERON_0001157) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [transverse colon](http://purl.obolibrary.org/obo/UBERON_0001157) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### remnant of Rathke's pouch `http://purl.obolibrary.org/obo/UBERON_0006377` +### triangular ligament of liver `http://purl.obolibrary.org/obo/UBERON_0035444` #### Removed -- [remnant of Rathke's pouch](http://purl.obolibrary.org/obo/UBERON_0006377) SubClassOf [multicellular anatomical structure](http://purl.obolibrary.org/obo/UBERON_0010000) +- [triangular ligament of liver](http://purl.obolibrary.org/obo/UBERON_0035444) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [triangular ligament of liver](http://purl.obolibrary.org/obo/UBERON_0035444) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) #### Added -- [remnant of Rathke's pouch](http://purl.obolibrary.org/obo/UBERON_0006377) SubClassOf [reproductive structure](http://purl.obolibrary.org/obo/UBERON_0005156) +- [triangular ligament of liver](http://purl.obolibrary.org/obo/UBERON_0035444) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [triangular ligament of liver](http://purl.obolibrary.org/obo/UBERON_0035444) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### renal cortex interstitium `http://purl.obolibrary.org/obo/UBERON_0005270` -#### Removed -- [renal cortex interstitium](http://purl.obolibrary.org/obo/UBERON_0005270) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [triangular ligament of liver](http://purl.obolibrary.org/obo/UBERON_0035444) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [triangular ligament of liver](http://purl.obolibrary.org/obo/UBERON_0035444) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### reproductive organ `http://purl.obolibrary.org/obo/UBERON_0003133` +### triangular part of inferior frontal gyrus `http://purl.obolibrary.org/obo/UBERON_0002629` #### Removed -- [reproductive organ](http://purl.obolibrary.org/obo/UBERON_0003133) EquivalentTo [organ](http://purl.obolibrary.org/obo/UBERON_0000062) and ([RO_0002216](http://purl.obolibrary.org/obo/RO_0002216) some [GO_0000003](http://purl.obolibrary.org/obo/GO_0000003)) +- [triangular part of inferior frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0002629) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -- [reproductive organ](http://purl.obolibrary.org/obo/UBERON_0003133) SubClassOf [RO_0002216](http://purl.obolibrary.org/obo/RO_0002216) some [GO_0000003](http://purl.obolibrary.org/obo/GO_0000003) +- [triangular part of inferior frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0002629) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) #### Added -- [reproductive organ](http://purl.obolibrary.org/obo/UBERON_0003133) EquivalentTo [organ](http://purl.obolibrary.org/obo/UBERON_0000062) and ([RO_0002216](http://purl.obolibrary.org/obo/RO_0002216) some [GO_0022414](http://purl.obolibrary.org/obo/GO_0022414)) +- [triangular part of inferior frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0002629) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [triangular part of inferior frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0002629) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -- [reproductive organ](http://purl.obolibrary.org/obo/UBERON_0003133) SubClassOf [RO_0002216](http://purl.obolibrary.org/obo/RO_0002216) some [GO_0022414](http://purl.obolibrary.org/obo/GO_0022414) +- [triangular part of inferior frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0002629) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [triangular part of inferior frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0002629) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### reproductive system `http://purl.obolibrary.org/obo/UBERON_0000990` +- [triangular part of inferior frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0002629) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [triangular part of inferior frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0002629) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### tricuspid valve `http://purl.obolibrary.org/obo/UBERON_0002134` #### Removed -- [reproductive system](http://purl.obolibrary.org/obo/UBERON_0000990) EquivalentTo [anatomical system](http://purl.obolibrary.org/obo/UBERON_0000467) and ([RO_0002216](http://purl.obolibrary.org/obo/RO_0002216) some [GO_0000003](http://purl.obolibrary.org/obo/GO_0000003)) +- [tricuspid valve](http://purl.obolibrary.org/obo/UBERON_0002134) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -- [reproductive system](http://purl.obolibrary.org/obo/UBERON_0000990) SubClassOf [RO_0002216](http://purl.obolibrary.org/obo/RO_0002216) some [GO_0000003](http://purl.obolibrary.org/obo/GO_0000003) +- [tricuspid valve](http://purl.obolibrary.org/obo/UBERON_0002134) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) #### Added -- [reproductive system](http://purl.obolibrary.org/obo/UBERON_0000990) EquivalentTo [anatomical system](http://purl.obolibrary.org/obo/UBERON_0000467) and ([RO_0002216](http://purl.obolibrary.org/obo/RO_0002216) some [GO_0022414](http://purl.obolibrary.org/obo/GO_0022414)) +- [tricuspid valve](http://purl.obolibrary.org/obo/UBERON_0002134) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -- [reproductive system](http://purl.obolibrary.org/obo/UBERON_0000990) SubClassOf [RO_0002216](http://purl.obolibrary.org/obo/RO_0002216) some [GO_0022414](http://purl.obolibrary.org/obo/GO_0022414) +- [tricuspid valve](http://purl.obolibrary.org/obo/UBERON_0002134) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [tricuspid valve](http://purl.obolibrary.org/obo/UBERON_0002134) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### respiratory tube `http://purl.obolibrary.org/obo/UBERON_0000117` -#### Removed -- [respiratory tube](http://purl.obolibrary.org/obo/UBERON_0000117) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [tricuspid valve](http://purl.obolibrary.org/obo/UBERON_0002134) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [tricuspid valve](http://purl.obolibrary.org/obo/UBERON_0002134) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [tricuspid valve](http://purl.obolibrary.org/obo/UBERON_0002134) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### reticular tissue `http://purl.obolibrary.org/obo/UBERON_0006804` + +### trigeminal nerve `http://purl.obolibrary.org/obo/UBERON_0001645` #### Removed -- [reticular tissue](http://purl.obolibrary.org/obo/UBERON_0006804) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [trigeminal nerve](http://purl.obolibrary.org/obo/UBERON_0001645) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HBA:9322" -### scalp `http://purl.obolibrary.org/obo/UBERON_0000403` -#### Removed -- [scalp](http://purl.obolibrary.org/obo/UBERON_0000403) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### trigeminal nerve root `http://purl.obolibrary.org/obo/UBERON_0004673` +#### Added +- [trigeminal nerve root](http://purl.obolibrary.org/obo/UBERON_0004673) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HBA:9322" -### secretion of lacrimal gland `http://purl.obolibrary.org/obo/UBERON_0001827` +### trigone of urinary bladder `http://purl.obolibrary.org/obo/UBERON_0001257` #### Removed -- [secretion of lacrimal gland](http://purl.obolibrary.org/obo/UBERON_0001827) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [trigone of urinary bladder](http://purl.obolibrary.org/obo/UBERON_0001257) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Urinary_Bladder.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [trigone of urinary bladder](http://purl.obolibrary.org/obo/UBERON_0001257) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Urinary_Bladder.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +#### Added +- [trigone of urinary bladder](http://purl.obolibrary.org/obo/UBERON_0001257) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.0/assets/VH_M_Urinary_Bladder.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [trigone of urinary bladder](http://purl.obolibrary.org/obo/UBERON_0001257) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.1/assets/VH_F_Urinary_Bladder.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### septal organ of Masera `http://purl.obolibrary.org/obo/UBERON_0015246` -#### Removed -- [septal organ of Masera](http://purl.obolibrary.org/obo/UBERON_0015246) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [trigone of urinary bladder](http://purl.obolibrary.org/obo/UBERON_0001257) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.1/assets/VH_M_Urinary_Bladder.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [trigone of urinary bladder](http://purl.obolibrary.org/obo/UBERON_0001257) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.0/assets/VH_F_Urinary_Bladder.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### septum of scrotum `http://purl.obolibrary.org/obo/UBERON_0006655` +### tuberal nucleus (sensu Rodentia) `http://purl.obolibrary.org/obo/UBERON_8440041` #### Removed -- [septum of scrotum](http://purl.obolibrary.org/obo/UBERON_0006655) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [tuberal nucleus (sensu Rodentia)](http://purl.obolibrary.org/obo/UBERON_8440041) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "DMBA:16271" -### serous membrane `http://purl.obolibrary.org/obo/UBERON_0000042` -#### Removed -- [serous membrane](http://purl.obolibrary.org/obo/UBERON_0000042) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### tympanic nerve `http://purl.obolibrary.org/obo/UBERON_0036216` + +#### Added +- [tympanic nerve](http://purl.obolibrary.org/obo/UBERON_0036216) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [tympanic nerve](http://purl.obolibrary.org/obo/UBERON_0036216) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### serous sac `http://purl.obolibrary.org/obo/UBERON_0005906` -#### Removed -- [serous sac](http://purl.obolibrary.org/obo/UBERON_0005906) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### uberon_slim `http://purl.obolibrary.org/obo/uberon/core#uberon_slim` +#### Added +- [uberon_slim](http://purl.obolibrary.org/obo/uberon/core#uberon_slim) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) -### skeletal ligament `http://purl.obolibrary.org/obo/UBERON_0008846` +### umbilical artery `http://purl.obolibrary.org/obo/UBERON_0001310` #### Removed -- [skeletal ligament](http://purl.obolibrary.org/obo/UBERON_0008846) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [umbilical artery](http://purl.obolibrary.org/obo/UBERON_0001310) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Placenta.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +#### Added +- [umbilical artery](http://purl.obolibrary.org/obo/UBERON_0001310) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/placenta-full-term-female/v1.0/assets/VH_F_Placenta.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### skin of body `http://purl.obolibrary.org/obo/UBERON_0002097` +### umbilical cord `http://purl.obolibrary.org/obo/UBERON_0002331` #### Removed -- [skin of body](http://purl.obolibrary.org/obo/UBERON_0002097) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [umbilical cord](http://purl.obolibrary.org/obo/UBERON_0002331) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Placenta.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +#### Added +- [umbilical cord](http://purl.obolibrary.org/obo/UBERON_0002331) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/placenta-full-term-female/v1.0/assets/VH_F_Placenta.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### spermatic cord `http://purl.obolibrary.org/obo/UBERON_0005352` +### umbilical vein `http://purl.obolibrary.org/obo/UBERON_0002066` #### Removed -- [spermatic cord](http://purl.obolibrary.org/obo/UBERON_0005352) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [umbilical vein](http://purl.obolibrary.org/obo/UBERON_0002066) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Placenta.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +#### Added +- [umbilical vein](http://purl.obolibrary.org/obo/UBERON_0002066) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/placenta-full-term-female/v1.0/assets/VH_F_Placenta.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### stomach glandular region `http://purl.obolibrary.org/obo/UBERON_0011953` +### uncinate process of pancreas `http://purl.obolibrary.org/obo/UBERON_0010373` #### Removed -- [stomach glandular region](http://purl.obolibrary.org/obo/UBERON_0011953) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [uncinate process of pancreas](http://purl.obolibrary.org/obo/UBERON_0010373) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [uncinate process of pancreas](http://purl.obolibrary.org/obo/UBERON_0010373) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +#### Added +- [uncinate process of pancreas](http://purl.obolibrary.org/obo/UBERON_0010373) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.0/assets/VH_F_Pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [uncinate process of pancreas](http://purl.obolibrary.org/obo/UBERON_0010373) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.1/assets/VH_F_Pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### stomach non-glandular region `http://purl.obolibrary.org/obo/UBERON_0011954` -#### Removed -- [stomach non-glandular region](http://purl.obolibrary.org/obo/UBERON_0011954) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [uncinate process of pancreas](http://purl.obolibrary.org/obo/UBERON_0010373) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.2/assets/3d-vh-m-pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [uncinate process of pancreas](http://purl.obolibrary.org/obo/UBERON_0010373) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.0/assets/VH_M_Pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [uncinate process of pancreas](http://purl.obolibrary.org/obo/UBERON_0010373) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.1/assets/VH_M_Pancreas.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### stratum spinosum of epidermis `http://purl.obolibrary.org/obo/UBERON_0002026` -#### Removed -- [stratum spinosum of epidermis](http://purl.obolibrary.org/obo/UBERON_0002026) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### unverified_taxonomic_grouping `http://purl.obolibrary.org/obo/uberon/core#unverified_taxonomic_grouping` + +#### Added +- [unverified_taxonomic_grouping](http://purl.obolibrary.org/obo/uberon/core#unverified_taxonomic_grouping) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) -### stroma of bone marrow `http://purl.obolibrary.org/obo/UBERON_0007195` +### upper lobe of left lung `http://purl.obolibrary.org/obo/UBERON_0008952` #### Removed -- [stroma of bone marrow](http://purl.obolibrary.org/obo/UBERON_0007195) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [upper lobe of left lung](http://purl.obolibrary.org/obo/UBERON_0008952) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [upper lobe of left lung](http://purl.obolibrary.org/obo/UBERON_0008952) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +#### Added +- [upper lobe of left lung](http://purl.obolibrary.org/obo/UBERON_0008952) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### subcommissural organ `http://purl.obolibrary.org/obo/UBERON_0002139` -#### Removed -- [subcommissural organ](http://purl.obolibrary.org/obo/UBERON_0002139) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [upper lobe of left lung](http://purl.obolibrary.org/obo/UBERON_0008952) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [upper lobe of left lung](http://purl.obolibrary.org/obo/UBERON_0008952) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [upper lobe of left lung](http://purl.obolibrary.org/obo/UBERON_0008952) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### subendocardium layer `http://purl.obolibrary.org/obo/UBERON_0005984` -#### Removed -- [subendocardium layer](http://purl.obolibrary.org/obo/UBERON_0005984) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [upper lobe of left lung](http://purl.obolibrary.org/obo/UBERON_0008952) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [upper lobe of left lung](http://purl.obolibrary.org/obo/UBERON_0008952) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [upper lobe of left lung](http://purl.obolibrary.org/obo/UBERON_0008952) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### synchondrosis `http://purl.obolibrary.org/obo/UBERON_0002215` + +### upper lobe of right lung `http://purl.obolibrary.org/obo/UBERON_0002170` #### Removed -- [synchondrosis](http://purl.obolibrary.org/obo/UBERON_0002215) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [upper lobe of right lung](http://purl.obolibrary.org/obo/UBERON_0002170) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [upper lobe of right lung](http://purl.obolibrary.org/obo/UBERON_0002170) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +#### Added +- [upper lobe of right lung](http://purl.obolibrary.org/obo/UBERON_0002170) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### tear film `http://purl.obolibrary.org/obo/UBERON_0022287` -#### Removed -- [tear film](http://purl.obolibrary.org/obo/UBERON_0022287) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [upper lobe of right lung](http://purl.obolibrary.org/obo/UBERON_0002170) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [upper lobe of right lung](http://purl.obolibrary.org/obo/UBERON_0002170) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [upper lobe of right lung](http://purl.obolibrary.org/obo/UBERON_0002170) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### tendon sheath `http://purl.obolibrary.org/obo/UBERON_0000304` -#### Removed -- [tendon sheath](http://purl.obolibrary.org/obo/UBERON_0000304) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [upper lobe of right lung](http://purl.obolibrary.org/obo/UBERON_0002170) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [upper lobe of right lung](http://purl.obolibrary.org/obo/UBERON_0002170) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [upper lobe of right lung](http://purl.obolibrary.org/obo/UBERON_0002170) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### theca externa `http://purl.obolibrary.org/obo/UBERON_0000156` -#### Removed -- [theca externa](http://purl.obolibrary.org/obo/UBERON_0000156) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### upper_level `http://purl.obolibrary.org/obo/uberon/core#upper_level` + +#### Added +- [upper_level](http://purl.obolibrary.org/obo/uberon/core#upper_level) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) -### thymoid `http://purl.obolibrary.org/obo/UBERON_0009116` +### urinary bladder `http://purl.obolibrary.org/obo/UBERON_0001255` #### Removed -- [thymoid](http://purl.obolibrary.org/obo/UBERON_0009116) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [urinary bladder](http://purl.obolibrary.org/obo/UBERON_0001255) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Urinary_Bladder.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [urinary bladder](http://purl.obolibrary.org/obo/UBERON_0001255) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Urinary_Bladder.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +#### Added +- [urinary bladder](http://purl.obolibrary.org/obo/UBERON_0001255) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.0/assets/VH_F_Urinary_Bladder.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [urinary bladder](http://purl.obolibrary.org/obo/UBERON_0001255) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.0/assets/VH_M_Urinary_Bladder.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### thymus `http://purl.obolibrary.org/obo/UBERON_0002370` +- [urinary bladder](http://purl.obolibrary.org/obo/UBERON_0001255) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.1/assets/VH_F_Urinary_Bladder.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [urinary bladder](http://purl.obolibrary.org/obo/UBERON_0001255) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.1/assets/VH_M_Urinary_Bladder.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### urinary bladder neck smooth muscle `http://purl.obolibrary.org/obo/UBERON_0004230` #### Removed -- [thymus](http://purl.obolibrary.org/obo/UBERON_0002370) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [urinary bladder neck smooth muscle](http://purl.obolibrary.org/obo/UBERON_0004230) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Urinary_Bladder.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [urinary bladder neck smooth muscle](http://purl.obolibrary.org/obo/UBERON_0004230) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Urinary_Bladder.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [urinary bladder neck smooth muscle](http://purl.obolibrary.org/obo/UBERON_0004230) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.0/assets/VH_F_Urinary_Bladder.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [urinary bladder neck smooth muscle](http://purl.obolibrary.org/obo/UBERON_0004230) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.0/assets/VH_M_Urinary_Bladder.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [urinary bladder neck smooth muscle](http://purl.obolibrary.org/obo/UBERON_0004230) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.1/assets/VH_M_Urinary_Bladder.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### thymus corticomedullary boundary `http://purl.obolibrary.org/obo/UBERON_0003988` +- [urinary bladder neck smooth muscle](http://purl.obolibrary.org/obo/UBERON_0004230) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.1/assets/VH_F_Urinary_Bladder.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + + +### uterine cervix `http://purl.obolibrary.org/obo/UBERON_0000002` #### Removed -- [thymus corticomedullary boundary](http://purl.obolibrary.org/obo/UBERON_0003988) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [uterine cervix](http://purl.obolibrary.org/obo/UBERON_0000002) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Uterus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +#### Added +- [uterine cervix](http://purl.obolibrary.org/obo/UBERON_0000002) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.1/assets/VH_F_Uterus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [uterine cervix](http://purl.obolibrary.org/obo/UBERON_0000002) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.0/assets/VH_F_Uterus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### thymus lobule `http://purl.obolibrary.org/obo/UBERON_0002125` +### uterus `http://purl.obolibrary.org/obo/UBERON_0000995` #### Removed -- [thymus lobule](http://purl.obolibrary.org/obo/UBERON_0002125) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [uterus](http://purl.obolibrary.org/obo/UBERON_0000995) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Uterus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +#### Added +- [uterus](http://purl.obolibrary.org/obo/UBERON_0000995) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.1/assets/VH_F_Uterus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [uterus](http://purl.obolibrary.org/obo/UBERON_0000995) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.0/assets/VH_F_Uterus.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### tracheobronchial tree `http://purl.obolibrary.org/obo/UBERON_0007196` + +### vagus nerve `http://purl.obolibrary.org/obo/UBERON_0001759` #### Removed -- [tracheobronchial tree](http://purl.obolibrary.org/obo/UBERON_0007196) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [vagus nerve](http://purl.obolibrary.org/obo/UBERON_0001759) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HBA:9337" + +### valve `http://purl.obolibrary.org/obo/UBERON_0003978` +#### Removed +- [valve](http://purl.obolibrary.org/obo/UBERON_0003978) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### trophoblast island `http://purl.obolibrary.org/obo/UBERON_8600050` +- [valve](http://purl.obolibrary.org/obo/UBERON_0003978) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) #### Added -- [trophoblast island](http://purl.obolibrary.org/obo/UBERON_8600050) [label](http://www.w3.org/2000/01/rdf-schema#label) "trophoblast island" +- [valve](http://purl.obolibrary.org/obo/UBERON_0003978) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [valve](http://purl.obolibrary.org/obo/UBERON_0003978) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -- [trophoblast island](http://purl.obolibrary.org/obo/UBERON_8600050) [comment](http://www.w3.org/2000/01/rdf-schema#comment) "A trophoblast island is directly continuous with villous cytotrophoblast in places where the villous syncytiotrophoblast is interrupted." - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "doi:10.1007/978-3-030-84725-8" +- [valve](http://purl.obolibrary.org/obo/UBERON_0003978) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -- [trophoblast island](http://purl.obolibrary.org/obo/UBERON_8600050) [hasOBONamespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" +- [valve](http://purl.obolibrary.org/obo/UBERON_0003978) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -- [trophoblast island](http://purl.obolibrary.org/obo/UBERON_8600050) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) +- [valve](http://purl.obolibrary.org/obo/UBERON_0003978) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -- [trophoblast island](http://purl.obolibrary.org/obo/UBERON_8600050) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "trophoblastic cell island" - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "doi:10.1007/978-3-030-84725-8" +- [valve](http://purl.obolibrary.org/obo/UBERON_0003978) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -- [trophoblast island](http://purl.obolibrary.org/obo/UBERON_8600050) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8600050" -- [trophoblast island](http://purl.obolibrary.org/obo/UBERON_8600050) [date](http://purl.org/dc/terms/date) "2024-04-15T10:05:35Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) +### vasculature `http://purl.obolibrary.org/obo/UBERON_0002049` -- [trophoblast island](http://purl.obolibrary.org/obo/UBERON_8600050) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "intraplacental trophoblast island" - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:33218578" +#### Added +- [vasculature](http://purl.obolibrary.org/obo/UBERON_0002049) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -- [trophoblast island](http://purl.obolibrary.org/obo/UBERON_8600050) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "An accumulation of extravillous trophoblast cells at the tip of a floating villus or occasionally attached to the chorionic plate embedded in fibrin." - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "doi:10.1007/978-3-030-84725-8" +- [vasculature](http://purl.obolibrary.org/obo/UBERON_0002049) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -- [trophoblast island](http://purl.obolibrary.org/obo/UBERON_8600050) [hasRelatedSynonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "cell island" - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "doi:10.1007/978-3-030-84725-8" +- [vasculature](http://purl.obolibrary.org/obo/UBERON_0002049) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -- Class: [trophoblast island](http://purl.obolibrary.org/obo/UBERON_8600050) +- [vasculature](http://purl.obolibrary.org/obo/UBERON_0002049) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -- [trophoblast island](http://purl.obolibrary.org/obo/UBERON_8600050) SubClassOf [RO_0001025](http://purl.obolibrary.org/obo/RO_0001025) some [intervillous space](http://purl.obolibrary.org/obo/UBERON_8600025) +- [vasculature](http://purl.obolibrary.org/obo/UBERON_0002049) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -- [trophoblast island](http://purl.obolibrary.org/obo/UBERON_8600050) SubClassOf [anatomical structure](http://purl.obolibrary.org/obo/UBERON_0000061) +- [vasculature](http://purl.obolibrary.org/obo/UBERON_0002049) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -- [trophoblast island](http://purl.obolibrary.org/obo/UBERON_8600050) SubClassOf [RO_0002473](http://purl.obolibrary.org/obo/RO_0002473) some [CL_0000351](http://purl.obolibrary.org/obo/CL_0000351) +- [vasculature](http://purl.obolibrary.org/obo/UBERON_0002049) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### tunica adventitia of blood vessel `http://purl.obolibrary.org/obo/UBERON_0005734` +### vasculature of eye `http://purl.obolibrary.org/obo/UBERON_0002203` #### Removed -- [tunica adventitia of blood vessel](http://purl.obolibrary.org/obo/UBERON_0005734) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [vasculature of eye](http://purl.obolibrary.org/obo/UBERON_0002203) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [vasculature of eye](http://purl.obolibrary.org/obo/UBERON_0002203) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +#### Added +- [vasculature of eye](http://purl.obolibrary.org/obo/UBERON_0002203) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### tunica albuginea `http://purl.obolibrary.org/obo/UBERON_0006610` -#### Removed -- [tunica albuginea](http://purl.obolibrary.org/obo/UBERON_0006610) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [vasculature of eye](http://purl.obolibrary.org/obo/UBERON_0002203) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +### vein `http://purl.obolibrary.org/obo/UBERON_0001638` -### tunica fibrosa of eyeball `http://purl.obolibrary.org/obo/UBERON_0012430` -#### Removed -- [tunica fibrosa of eyeball](http://purl.obolibrary.org/obo/UBERON_0012430) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +#### Added +- [vein](http://purl.obolibrary.org/obo/UBERON_0001638) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [vein](http://purl.obolibrary.org/obo/UBERON_0001638) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### tunica intima `http://purl.obolibrary.org/obo/UBERON_0002523` +### vena cava `http://purl.obolibrary.org/obo/UBERON_0004087` #### Removed -- [tunica intima](http://purl.obolibrary.org/obo/UBERON_0002523) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [vena cava](http://purl.obolibrary.org/obo/UBERON_0004087) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [vena cava](http://purl.obolibrary.org/obo/UBERON_0004087) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +#### Added +- [vena cava](http://purl.obolibrary.org/obo/UBERON_0004087) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [vena cava](http://purl.obolibrary.org/obo/UBERON_0004087) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### tunica vaginalis testis `http://purl.obolibrary.org/obo/UBERON_0006650` -#### Removed -- [tunica vaginalis testis](http://purl.obolibrary.org/obo/UBERON_0006650) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [vena cava](http://purl.obolibrary.org/obo/UBERON_0004087) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [vena cava](http://purl.obolibrary.org/obo/UBERON_0004087) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [vena cava](http://purl.obolibrary.org/obo/UBERON_0004087) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### udder `http://purl.obolibrary.org/obo/UBERON_0013216` -#### Removed -- [udder](http://purl.obolibrary.org/obo/UBERON_0013216) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [vena cava](http://purl.obolibrary.org/obo/UBERON_0004087) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +### ventral ramus of spinal nerve `http://purl.obolibrary.org/obo/UBERON_0006838` -### ultimobranchial body `http://purl.obolibrary.org/obo/UBERON_0003092` -#### Removed -- [ultimobranchial body](http://purl.obolibrary.org/obo/UBERON_0003092) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +#### Added +- [ventral ramus of spinal nerve](http://purl.obolibrary.org/obo/UBERON_0006838) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ventral ramus of spinal nerve](http://purl.obolibrary.org/obo/UBERON_0006838) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### upper fourth secondary molar tooth `http://purl.obolibrary.org/obo/UBERON_7500057` +### ventral root of spinal cord `http://purl.obolibrary.org/obo/UBERON_0002260` #### Added -- [upper fourth secondary molar tooth](http://purl.obolibrary.org/obo/UBERON_7500057) EquivalentTo [molar tooth 4](http://purl.obolibrary.org/obo/UBERON_7500055) and ([BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [upper jaw region](http://purl.obolibrary.org/obo/UBERON_0001709)) and ([BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [secondary dentition](http://purl.obolibrary.org/obo/UBERON_0007774)) +- [ventral root of spinal cord](http://purl.obolibrary.org/obo/UBERON_0002260) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -- [upper fourth secondary molar tooth](http://purl.obolibrary.org/obo/UBERON_7500057) SubClassOf [molar tooth 4](http://purl.obolibrary.org/obo/UBERON_7500055) +- [ventral root of spinal cord](http://purl.obolibrary.org/obo/UBERON_0002260) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### vascular cord `http://purl.obolibrary.org/obo/UBERON_0006965` +### vermiform appendix `http://purl.obolibrary.org/obo/UBERON_0001154` #### Removed -- [vascular cord](http://purl.obolibrary.org/obo/UBERON_0006965) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) - +- [vermiform appendix](http://purl.obolibrary.org/obo/UBERON_0001154) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [vermiform appendix](http://purl.obolibrary.org/obo/UBERON_0001154) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### vascular plexus `http://purl.obolibrary.org/obo/UBERON_0005629` -#### Removed -- [vascular plexus](http://purl.obolibrary.org/obo/UBERON_0005629) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +#### Added +- [vermiform appendix](http://purl.obolibrary.org/obo/UBERON_0001154) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [vermiform appendix](http://purl.obolibrary.org/obo/UBERON_0001154) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [vermiform appendix](http://purl.obolibrary.org/obo/UBERON_0001154) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### venous system `http://purl.obolibrary.org/obo/UBERON_0004582` -#### Removed -- [venous system](http://purl.obolibrary.org/obo/UBERON_0004582) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [vermiform appendix](http://purl.obolibrary.org/obo/UBERON_0001154) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [vermiform appendix](http://purl.obolibrary.org/obo/UBERON_0001154) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [vermiform appendix](http://purl.obolibrary.org/obo/UBERON_0001154) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### vibrissal follicle-sinus complex `http://purl.obolibrary.org/obo/UBERON_0034942` -#### Removed -- [vibrissal follicle-sinus complex](http://purl.obolibrary.org/obo/UBERON_0034942) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### vertebrate_core `http://purl.obolibrary.org/obo/uberon/core#vertebrate_core` +#### Added +- [vertebrate_core](http://purl.obolibrary.org/obo/uberon/core#vertebrate_core) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) -### webbed autopod `http://purl.obolibrary.org/obo/UBERON_0008440` -#### Removed -- [webbed autopod](http://purl.obolibrary.org/obo/UBERON_0008440) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### vidian nerve `http://purl.obolibrary.org/obo/UBERON_0018412` +#### Added +- [vidian nerve](http://purl.obolibrary.org/obo/UBERON_0018412) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### white pulp of spleen `http://purl.obolibrary.org/obo/UBERON_0001959` -#### Removed -- [white pulp of spleen](http://purl.obolibrary.org/obo/UBERON_0001959) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [vidian nerve](http://purl.obolibrary.org/obo/UBERON_0018412) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +### vocalis muscle `http://purl.obolibrary.org/obo/UBERON_0008577` -### zone of skin `http://purl.obolibrary.org/obo/UBERON_0000014` -#### Removed -- [zone of skin](http://purl.obolibrary.org/obo/UBERON_0000014) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +#### Added +- [vocalis muscle](http://purl.obolibrary.org/obo/UBERON_0008577) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [vocalis muscle](http://purl.obolibrary.org/obo/UBERON_0008577) [depiction](http://xmlns.com/foaf/0.1/depiction) "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) diff --git a/src/ontology/imports/local-cl.owl b/src/ontology/imports/local-cl.owl index 35d0209291..b7eac8ed35 100644 --- a/src/ontology/imports/local-cl.owl +++ b/src/ontology/imports/local-cl.owl @@ -1,6 +1,8 @@ Prefix(:=) Prefix(cl:=) Prefix(dc:=) +Prefix(go:=) +Prefix(pr:=) Prefix(obo:=) Prefix(owl:=) Prefix(rdf:=) @@ -10,14 +12,17 @@ Prefix(core:=) Prefix(foaf:=) Prefix(pato:=) Prefix(rdfs:=) +Prefix(sssom:=) Prefix(terms:=) Prefix(uberon:=) Prefix(ubprop:=) +Prefix(subsets:=) Prefix(oboInOwl:=) +Prefix(ncbitaxon:=) Ontology( - + Annotation(obo:IAO_0000700 obo:CL_0000000) Annotation(dc:description "An ontology of cell types.") Annotation(dc:title "Cell Ontology") @@ -33,8 +38,9 @@ Annotation(terms:contributor ) Annotation(terms:contributor ) Annotation(terms:license ) Annotation(rdfs:comment "See PMID:15693950, PMID:12799354, PMID:20123131, PMID:21208450; Contact Alexander Diehl, addiehl@buffalo.edu, University at Buffalo.") -Annotation(owl:versionInfo "2024-02-13") +Annotation(owl:versionInfo "2024-05-15") +Declaration(Class(obo:BFO_0000002)) Declaration(Class(obo:CL_0000000)) Declaration(Class(obo:CL_0000001)) Declaration(Class(obo:CL_0000002)) @@ -3020,12 +3026,25 @@ Declaration(Class(obo:CL_4033061)) Declaration(Class(obo:CL_4033062)) Declaration(Class(obo:CL_4033063)) Declaration(Class(obo:CL_4033064)) +Declaration(Class(obo:CL_4033065)) Declaration(Class(obo:CL_4040000)) Declaration(Class(obo:CL_4040001)) Declaration(Class(obo:CL_4040002)) Declaration(Class(obo:CL_4040003)) Declaration(Class(obo:CL_4040004)) Declaration(Class(obo:CL_4040005)) +Declaration(Class(obo:CL_4040006)) +Declaration(Class(obo:CL_4042001)) +Declaration(Class(obo:CL_4042002)) +Declaration(Class(obo:CL_4042003)) +Declaration(Class(obo:CL_4042004)) +Declaration(Class(obo:CL_4042005)) +Declaration(Class(obo:CL_4042006)) +Declaration(Class(obo:CL_4042007)) +Declaration(Class(obo:CL_4042008)) +Declaration(Class(obo:CL_4042009)) +Declaration(Class(obo:CL_4042010)) +Declaration(Class(obo:CL_4042011)) Declaration(Class(obo:GO_0000278)) Declaration(Class(obo:GO_0000791)) Declaration(Class(obo:GO_0000792)) @@ -3077,6 +3096,7 @@ Declaration(Class(obo:GO_0002828)) Declaration(Class(obo:GO_0002830)) Declaration(Class(obo:GO_0002905)) Declaration(Class(obo:GO_0005044)) +Declaration(Class(obo:GO_0005576)) Declaration(Class(obo:GO_0005634)) Declaration(Class(obo:GO_0005730)) Declaration(Class(obo:GO_0005737)) @@ -3148,6 +3168,7 @@ Declaration(Class(obo:GO_0030317)) Declaration(Class(obo:GO_0030424)) Declaration(Class(obo:GO_0030425)) Declaration(Class(obo:GO_0030851)) +Declaration(Class(obo:GO_0031012)) Declaration(Class(obo:GO_0031045)) Declaration(Class(obo:GO_0031268)) Declaration(Class(obo:GO_0031294)) @@ -3172,6 +3193,7 @@ Declaration(Class(obo:GO_0032689)) Declaration(Class(obo:GO_0032782)) Declaration(Class(obo:GO_0032816)) Declaration(Class(obo:GO_0032940)) +Declaration(Class(obo:GO_0032991)) Declaration(Class(obo:GO_0033001)) Declaration(Class(obo:GO_0033152)) Declaration(Class(obo:GO_0033326)) @@ -3214,12 +3236,12 @@ Declaration(Class(obo:GO_0043134)) Declaration(Class(obo:GO_0043195)) Declaration(Class(obo:GO_0043208)) Declaration(Class(obo:GO_0043209)) +Declaration(Class(obo:GO_0043226)) Declaration(Class(obo:GO_0043277)) Declaration(Class(obo:GO_0043368)) Declaration(Class(obo:GO_0043370)) Declaration(Class(obo:GO_0043379)) Declaration(Class(obo:GO_0043384)) -Declaration(Class(obo:GO_0044237)) Declaration(Class(obo:GO_0044316)) Declaration(Class(obo:GO_0045058)) Declaration(Class(obo:GO_0045087)) @@ -3654,6 +3676,7 @@ Declaration(Class(obo:UBERON_0000102)) Declaration(Class(obo:UBERON_0000114)) Declaration(Class(obo:UBERON_0000115)) Declaration(Class(obo:UBERON_0000121)) +Declaration(Class(obo:UBERON_0000122)) Declaration(Class(obo:UBERON_0000159)) Declaration(Class(obo:UBERON_0000160)) Declaration(Class(obo:UBERON_0000173)) @@ -3918,6 +3941,7 @@ Declaration(Class(obo:UBERON_0002081)) Declaration(Class(obo:UBERON_0002082)) Declaration(Class(obo:UBERON_0002084)) Declaration(Class(obo:UBERON_0002085)) +Declaration(Class(obo:UBERON_0002092)) Declaration(Class(obo:UBERON_0002094)) Declaration(Class(obo:UBERON_0002095)) Declaration(Class(obo:UBERON_0002097)) @@ -3967,6 +3991,7 @@ Declaration(Class(obo:UBERON_0002298)) Declaration(Class(obo:UBERON_0002299)) Declaration(Class(obo:UBERON_0002303)) Declaration(Class(obo:UBERON_0002313)) +Declaration(Class(obo:UBERON_0002316)) Declaration(Class(obo:UBERON_0002320)) Declaration(Class(obo:UBERON_0002321)) Declaration(Class(obo:UBERON_0002328)) @@ -3981,6 +4006,7 @@ Declaration(Class(obo:UBERON_0002352)) Declaration(Class(obo:UBERON_0002353)) Declaration(Class(obo:UBERON_0002358)) Declaration(Class(obo:UBERON_0002360)) +Declaration(Class(obo:UBERON_0002361)) Declaration(Class(obo:UBERON_0002363)) Declaration(Class(obo:UBERON_0002364)) Declaration(Class(obo:UBERON_0002365)) @@ -4043,9 +4069,9 @@ Declaration(Class(obo:UBERON_0003688)) Declaration(Class(obo:UBERON_0003718)) Declaration(Class(obo:UBERON_0003729)) Declaration(Class(obo:UBERON_0003846)) -Declaration(Class(obo:UBERON_0003889)) Declaration(Class(obo:UBERON_0003902)) Declaration(Class(obo:UBERON_0003909)) +Declaration(Class(obo:UBERON_0003911)) Declaration(Class(obo:UBERON_0003929)) Declaration(Class(obo:UBERON_0003942)) Declaration(Class(obo:UBERON_0003988)) @@ -4056,6 +4082,7 @@ Declaration(Class(obo:UBERON_0004026)) Declaration(Class(obo:UBERON_0004044)) Declaration(Class(obo:UBERON_0004059)) Declaration(Class(obo:UBERON_0004088)) +Declaration(Class(obo:UBERON_0004121)) Declaration(Class(obo:UBERON_0004129)) Declaration(Class(obo:UBERON_0004134)) Declaration(Class(obo:UBERON_0004135)) @@ -4125,6 +4152,7 @@ Declaration(Class(obo:UBERON_0005169)) Declaration(Class(obo:UBERON_0005176)) Declaration(Class(obo:UBERON_0005185)) Declaration(Class(obo:UBERON_0005203)) +Declaration(Class(obo:UBERON_0005206)) Declaration(Class(obo:UBERON_0005211)) Declaration(Class(obo:UBERON_0005212)) Declaration(Class(obo:UBERON_0005213)) @@ -4333,6 +4361,7 @@ Declaration(ObjectProperty(obo:RO_0002130)) Declaration(ObjectProperty(obo:RO_0002134)) Declaration(ObjectProperty(obo:RO_0002160)) Declaration(ObjectProperty(obo:RO_0002162)) +Declaration(ObjectProperty(obo:RO_0002170)) Declaration(ObjectProperty(obo:RO_0002202)) Declaration(ObjectProperty(obo:RO_0002203)) Declaration(ObjectProperty(obo:RO_0002207)) @@ -4389,6 +4418,7 @@ Declaration(AnnotationProperty(oboInOwl:is_inferred)) Declaration(AnnotationProperty(oboInOwl:note)) Declaration(AnnotationProperty(oboInOwl:source)) Declaration(AnnotationProperty(foaf:depiction)) +Declaration(AnnotationProperty(sssom:mapping_justification)) ############################ # Object Properties @@ -4418,7 +4448,7 @@ AnnotationAssertion(rdfs:label obo:CL_4030046 "lacks_plasma_membrane_part") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CARO:mah") obo:IAO_0000115 obo:CL_0000000 "A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000000 "CALOHA:TS-2035") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000000 "FBbt:00007002") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000000 "FBbt:00007002") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000000 "FMA:68646") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000000 "GO:0005623") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000000 "KUPO:0000002") @@ -4426,12 +4456,16 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000000 "MESH:D002477") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000000 "VHOG:0001533") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000000 "WBbt:0004017") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000000 "XAO:0003012") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000000 "ZFA:0009000") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000000 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000000 ubprop:_upper_level) AnnotationAssertion(rdfs:comment obo:CL_0000000 "The definition of cell is intended to represent all cells, and thus a cell is defined as a material entity and not an anatomical structure, which implies that it is part of an organism (or the entirety of one).") AnnotationAssertion(rdfs:label obo:CL_0000000 "cell") SubClassOf(obo:CL_0000000 obo:UBERON_0000061) SubClassOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_131567)) +DisjointClasses(obo:CL_0000000 obo:GO_0031012) +DisjointClasses(obo:CL_0000000 obo:GO_0032991) +DisjointClasses(obo:CL_0000000 obo:GO_0043226) # Class: obo:CL_0000001 (primary cultured cell) @@ -4479,31 +4513,37 @@ AnnotationAssertion(rdfs:comment obo:CL_0000004 "This term was made obsolete bec AnnotationAssertion(rdfs:label obo:CL_0000004 "obsolete cell by organism") AnnotationAssertion(owl:deprecated obo:CL_0000004 "true"^^xsd:boolean) -# Class: obo:CL_0000005 (fibroblast neural crest derived) +# Class: obo:CL_0000005 (neural crest derived fibroblast) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "https://orcid.org/0000-0001-5208-3432") obo:IAO_0000115 obo:CL_0000005 "Any fibroblast that is deriived from the neural crest.") -AnnotationAssertion(rdfs:label obo:CL_0000005 "fibroblast neural crest derived") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "https://orcid.org/0000-0001-5208-3432") obo:IAO_0000115 obo:CL_0000005 "Any fibroblast that is derived from the neural crest.") +AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000005 "fibroblast neural crest derived") +AnnotationAssertion(rdfs:label obo:CL_0000005 "neural crest derived fibroblast") EquivalentClasses(obo:CL_0000005 ObjectIntersectionOf(obo:CL_0000057 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000333))) SubClassOf(obo:CL_0000005 obo:CL_0000057) SubClassOf(obo:CL_0000005 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000008)) # Class: obo:CL_0000006 (neuronal receptor cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0000006 "Any sensory receptor cell that is a(n) neuron and is capable of some detection of stimulus involved in sensory perception.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000006 "ZFA:0009001") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000006 "neuronal receptor cell (sensu Animalia)") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000006 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000006 "neuronal receptor cell") EquivalentClasses(obo:CL_0000006 ObjectIntersectionOf(obo:CL_0000197 obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050906))) +SubClassOf(obo:CL_0000006 obo:CL_0000101) SubClassOf(obo:CL_0000006 obo:CL_0000197) # Class: obo:CL_0000007 (early embryonic cell (metazoa)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0000007 "A cell found in the embryo before the formation of all the gem layers is complete.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000007 "ZFA:0009002") AnnotationAssertion(rdfs:label obo:CL_0000007 "early embryonic cell (metazoa)") SubClassOf(obo:CL_0000007 obo:CL_0002321) # Class: obo:CL_0000008 (migratory cranial neural crest cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ZFA:0007091") Annotation(oboInOwl:hasDbXref "https://orcid.org/0000-0001-5208-3432") obo:IAO_0000115 obo:CL_0000008 "Cell that is part of the migratory cranial neural crest population. Migratory cranial neural crest cells develop from premigratory cranial neural crest cells and have undergone epithelial to mesenchymal transition and delamination.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000008 "ZFA:0007091") AnnotationAssertion(rdfs:label obo:CL_0000008 "migratory cranial neural crest cell") SubClassOf(obo:CL_0000008 obo:CL_0000333) @@ -4527,6 +4567,7 @@ SubClassOf(obo:CL_0000010 obo:CL_0000578) # Class: obo:CL_0000011 (migratory trunk neural crest cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ZFA:0007095") Annotation(oboInOwl:hasDbXref "https://orcid.org/0000-0001-5208-3432") obo:IAO_0000115 obo:CL_0000011 "Cell that is part of the migratory trunk neural crest population. Migratory trunk neural crest cells develop from premigratory trunk neural crest cells and have undergone epithelial to mesenchymal transition and delamination.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000011 "ZFA:0007095") AnnotationAssertion(rdfs:label obo:CL_0000011 "migratory trunk neural crest cell") SubClassOf(obo:CL_0000011 obo:CL_0000333) @@ -4548,11 +4589,13 @@ AnnotationAssertion(owl:deprecated obo:CL_0000013 "true"^^xsd:boolean) # Class: obo:CL_0000014 (germ line stem cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1016/j.stem.2012.05.016") obo:IAO_0000115 obo:CL_0000014 "A stem cell that is the precursor of gametes.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000014 "FBbt:00004861") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000014 "FBbt:00004861") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000014 "ZFA:0005956") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000014 "germline stem cell") AnnotationAssertion(rdfs:label obo:CL_0000014 "germ line stem cell") EquivalentClasses(obo:CL_0000014 ObjectIntersectionOf(obo:CL_0000039 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0017145))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000014 obo:CL_0000034) +SubClassOf(obo:CL_0000014 obo:CL_0000039) # Class: obo:CL_0000015 (male germ cell) @@ -4570,7 +4613,7 @@ SubClassOf(obo:CL_0000015 ObjectSomeValuesFrom(obo:RO_0002216 obo:GO_0007283)) # Class: obo:CL_0000016 (male germ line stem cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1016/j.stem.2012.05.016") obo:IAO_0000115 obo:CL_0000016 "A stem cell that is the precursor of male gametes.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000016 "FBbt:00004929") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000016 "FBbt:00004929") AnnotationAssertion(rdfs:label obo:CL_0000016 "male germ line stem cell") SubClassOf(obo:CL_0000016 obo:CL_0000014) SubClassOf(obo:CL_0000016 obo:CL_0000015) @@ -4581,12 +4624,16 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000017 "BTO:0001275") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000017 "CALOHA:TS-0951") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000017 "EMAPA:31484") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000017 "FBbt:00004936") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000017 "FBbt:00004936") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000017 "FMA:84049") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000017 "WBbt:0006799") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000017 "ZFA:0009005") AnnotationAssertion(rdfs:label obo:CL_0000017 "spermatocyte") EquivalentClasses(obo:CL_0000017 ObjectIntersectionOf(obo:CL_0000015 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0048137))) +SubClassOf(obo:CL_0000017 obo:BFO_0000002) +SubClassOf(obo:CL_0000017 obo:CL_0000015) SubClassOf(obo:CL_0000017 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000020)) +SubClassOf(obo:CL_0000017 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0048137)) # Class: obo:CL_0000018 (spermatid) @@ -4594,13 +4641,20 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D013087") obo:IAO_000011 AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000018 "BTO:0001274") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000018 "CALOHA:TS-0950") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000018 "EMAPA:31486") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000018 "FBbt:00004942") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000018 "FBbt:00004942") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000018 "FMA:72294") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000018 "WBbt:0006800") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000018 "ZFA:0005769") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000018 "nematoblast") AnnotationAssertion(rdfs:label obo:CL_0000018 "spermatid") EquivalentClasses(obo:CL_0000018 ObjectIntersectionOf(obo:CL_0000015 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001375) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001675) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0007288) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0007289))) +SubClassOf(obo:CL_0000018 obo:BFO_0000002) +SubClassOf(obo:CL_0000018 obo:CL_0000015) +SubClassOf(obo:CL_0000018 obo:CL_0000413) SubClassOf(obo:CL_0000018 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000657)) +SubClassOf(obo:CL_0000018 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001675)) +SubClassOf(obo:CL_0000018 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0007288)) +SubClassOf(obo:CL_0000018 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0007289)) # Class: obo:CL_0000019 (sperm) @@ -4608,14 +4662,16 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000019 "BTO:0001277") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000019 "BTO:0002046") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000019 "CALOHA:TS-0949") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000019 "FBbt:00004954") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000019 "FBbt:00004954") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000019 "FMA:67338") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000019 "WBbt:0006798") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000019 "ZFA:0009006") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000019 "sperm cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000019 "spermatozoid") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000019 "spermatozoon") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000019 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000019 "sperm") +SubClassOf(obo:CL_0000019 obo:BFO_0000002) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000019 obo:CL_0000408) SubClassOf(obo:CL_0000019 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000018)) @@ -4625,12 +4681,16 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D013093") obo:IAO_000011 AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000020 "BTO:0000958") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000020 "CALOHA:TS-2193") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000020 "EMAPA:31482") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000020 "FBbt:00004934") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000020 "FBbt:00004935") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000020 "FBbt:00004934") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000020 "FBbt:00004935") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000020 "FMA:72291") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000020 "ZFA:0009007") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000020 "spermatogonial cell") AnnotationAssertion(rdfs:label obo:CL_0000020 "spermatogonium") EquivalentClasses(obo:CL_0000020 ObjectIntersectionOf(obo:CL_0000015 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001394) ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001501))) +SubClassOf(obo:CL_0000020 obo:CL_0000015) +SubClassOf(obo:CL_0000020 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001394)) +SubClassOf(obo:CL_0000020 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001501)) # Class: obo:CL_0000021 (female germ cell) @@ -4642,11 +4702,12 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000021 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000021 "female germ cell") EquivalentClasses(obo:CL_0000021 ObjectIntersectionOf(obo:CL_0000586 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0048477))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000021 obo:CL_0000586) +SubClassOf(obo:CL_0000021 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0048477)) # Class: obo:CL_0000022 (female germ line stem cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1016/j.stem.2012.05.016") obo:IAO_0000115 obo:CL_0000022 "A stem cell that is the precursor of female gametes.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000022 "FBbt:00004873") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000022 "FBbt:00004873") AnnotationAssertion(rdfs:label obo:CL_0000022 "female germ line stem cell") EquivalentClasses(obo:CL_0000022 ObjectIntersectionOf(obo:CL_0000021 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0017145))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000022 obo:CL_0000014) @@ -4657,14 +4718,17 @@ SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000022 obo:CL_0000021 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0721662544") obo:IAO_0000115 obo:CL_0000023 "A female germ cell that has entered meiosis.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000023 "BTO:0000964") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000023 "CALOHA:TS-0711") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000023 "FBbt:00004886") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000023 "FBbt:00004886") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000023 "FMA:18644") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000023 "MESH:D009865") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000023 "WBbt:0006797") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000023 "ZFA:0001109") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000023 "oogonium") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000023 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000023 "oocyte") +SubClassOf(obo:CL_0000023 obo:BFO_0000002) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000023 obo:CL_0000021) +SubClassOf(obo:CL_0000023 obo:CL_0000255) SubClassOf(obo:CL_0000023 ObjectSomeValuesFrom(obo:RO_0000056 obo:GO_0007143)) SubClassOf(obo:CL_0000023 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_33208)) @@ -4672,11 +4736,14 @@ SubClassOf(obo:CL_0000023 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_3320 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0721662544") obo:IAO_0000115 obo:CL_0000024 "An undifferentiated germ cell that proliferates rapidly and gives rise to oocytes.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000024 "FMA:83673") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000024 "ZFA:0005878") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000024 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000024 "oogonial cell") EquivalentClasses(obo:CL_0000024 ObjectIntersectionOf(obo:CL_0000021 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0000278))) +SubClassOf(obo:CL_0000024 obo:BFO_0000002) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000024 obo:CL_0000021) SubClassOf(obo:CL_0000024 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000670)) +SubClassOf(obo:CL_0000024 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0000278)) # Class: obo:CL_0000025 (egg cell) @@ -4684,13 +4751,15 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000025 "BTO:0000369") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000025 "BTO:0003801") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000025 "CALOHA:TS-2191") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000025 "FBbt:00057012") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000025 "FBbt:00057012") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000025 "FMA:67343") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000025 "MESH:D010063") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000025 "ZFA:0001570") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000025 "mature oocyte") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000025 "ovum") AnnotationAssertion(rdfs:label obo:CL_0000025 "egg cell") AnnotationAssertion(foaf:depiction obo:CL_0000025 "https://www.swissbiopics.org/api/image/Egg_cell.svg"^^xsd:anyURI) +SubClassOf(obo:CL_0000025 obo:BFO_0000002) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000025 obo:CL_0000675) SubClassOf(obo:CL_0000025 ObjectSomeValuesFrom(obo:RO_0000056 obo:GO_0007143)) SubClassOf(obo:CL_0000025 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000023)) @@ -4699,9 +4768,10 @@ SubClassOf(obo:CL_0000025 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000023)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:15848391") obo:IAO_0000115 obo:CL_0000026 "A germline cell that contributes to the development of the oocyte by transferring cytoplasm directly to oocyte.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000026 "BTO:0000953") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000026 "FBbt:00004878") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000026 "FBbt:00004878") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000026 "nurse cell") AnnotationAssertion(rdfs:label obo:CL_0000026 "invertebrate nurse cell") +SubClassOf(obo:CL_0000026 obo:BFO_0000002) SubClassOf(obo:CL_0000026 obo:CL_0000412) SubClassOf(obo:CL_0000026 obo:CL_4029002) SubClassOf(obo:CL_0000026 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000722)) @@ -4717,22 +4787,28 @@ SubClassOf(obo:CL_0000027 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000008)) # Class: obo:CL_0000028 (CNS neuron (sensu Nematoda and Protostomia)) AnnotationAssertion(rdfs:label obo:CL_0000028 "CNS neuron (sensu Nematoda and Protostomia)") +SubClassOf(obo:CL_0000028 obo:BFO_0000002) SubClassOf(obo:CL_0000028 obo:CL_0000540) SubClassOf(obo:CL_0000028 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001017)) SubClassOf(obo:CL_0000028 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000338)) # Class: obo:CL_0000029 (neural crest derived neuron) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0000029 "Any neuron that develops from some migratory neural crest cell.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000029 "ZFA:0009009") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000029 "neuron neural crest derived") AnnotationAssertion(rdfs:label obo:CL_0000029 "neural crest derived neuron") EquivalentClasses(obo:CL_0000029 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000333))) +SubClassOf(obo:CL_0000029 obo:BFO_0000002) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000029 obo:CL_0000540) SubClassOf(obo:CL_0000029 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002676)) # Class: obo:CL_0000030 (glioblast) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000030 "ZFA:0009010") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000030 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000030 "glioblast") +SubClassOf(obo:CL_0000030 obo:BFO_0000002) SubClassOf(obo:CL_0000030 obo:CL_0000055) SubClassOf(obo:CL_0000030 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000133)) @@ -4741,17 +4817,21 @@ SubClassOf(obo:CL_0000030 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000133)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:NV") Annotation(oboInOwl:hasDbXref "http://en.wikipedia.org/wiki/Neuroblast") obo:IAO_0000115 obo:CL_0000031 "A cell that will develop into a neuron often after a migration phase.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000031 "BTO:0000930") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000031 "FMA:70563") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000031 "ZFA:0009011") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000031 "neuroblast") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000031 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000031 "neuroblast (sensu Vertebrata)") SubClassOf(obo:CL_0000031 obo:CL_0000055) +SubClassOf(obo:CL_0000031 obo:CL_0000255) SubClassOf(obo:CL_0000031 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_7742)) # Class: obo:CL_0000032 (neuroplacodal cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0618947256") obo:IAO_0000115 obo:CL_0000032 "A cell of a platelike structure, especially a thickened plate of ectoderm in the early embryo, from which a sense organ develops.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000032 "ZFA:0009012") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000032 "neural placode cell") AnnotationAssertion(rdfs:label obo:CL_0000032 "neuroplacodal cell") +SubClassOf(obo:CL_0000032 obo:BFO_0000002) SubClassOf(obo:CL_0000032 obo:CL_0002321) SubClassOf(obo:CL_0000032 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000114)) @@ -4769,6 +4849,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl AnnotationAssertion(obo:RO_0002175 obo:CL_0000034 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000034 "CALOHA:TS-2086") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000034 "FMA:63368") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000034 "ZFA:0005957") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000034 "animal stem cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000034 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000034 cl:general_cell_types_upper_slim) @@ -4776,18 +4857,21 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000034 core:human_reference_atlas) AnnotationAssertion(rdfs:comment obo:CL_0000034 "This term applies to metazoan. For plant stem cells, consider using PO:0004011 ‘initial cell’ or its parent PO:0004010 ‘meristematic cell’.") AnnotationAssertion(rdfs:label obo:CL_0000034 "stem cell") EquivalentClasses(obo:CL_0000034 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0017145))) +SubClassOf(obo:CL_0000034 obo:CL_0011115) SubClassOf(obo:CL_0000034 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_33208)) -SubClassOf(obo:CL_0000034 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030154)) +SubClassOf(obo:CL_0000034 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0017145)) # Class: obo:CL_0000035 (single fate stem cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0000035 "A stem cell that self-renews as well as give rise to a single mature cell type.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000035 "FMA:70569") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000035 "ZFA:0009013") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000035 "unipotent stem cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000035 "unipotential stem cell") AnnotationAssertion(rdfs:label obo:CL_0000035 "single fate stem cell") EquivalentClasses(obo:CL_0000035 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001400) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0017145))) SubClassOf(obo:CL_0000035 obo:CL_0000723) +SubClassOf(obo:CL_0000035 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001400)) # Class: obo:CL_0000036 (epithelial fate stem cell) @@ -4807,6 +4891,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000037 "CALOHA:TS-0448") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000037 "FMA:86475") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000037 "MESH:D006412") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000037 "VHOG:0001485") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000037 "ZFA:0009014") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000037 "blood forming stem cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000037 "hemopoietic stem cell") AnnotationAssertion(Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_0000037 "HSC") @@ -4817,14 +4902,29 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000037 core:human_reference_atlas) AnnotationAssertion(rdfs:comment obo:CL_0000037 "Markers differ between species, and two sets of markers have been described for mice. HSCs are reportedly CD34-positive, CD45-positive, CD48-negative, CD150-positive, CD133-positive, and CD244-negative.") AnnotationAssertion(rdfs:label obo:CL_0000037 "hematopoietic stem cell") EquivalentClasses(obo:CL_0000037 ObjectIntersectionOf(obo:CL_0000988 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001024) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001083) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001839) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001889) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002978) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002981) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002244) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0048103))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000037 obo:CL_0000988) +SubClassOf(obo:CL_0000037 obo:CL_0000723) SubClassOf(obo:CL_0000037 obo:CL_0008001) +SubClassOf(obo:CL_0000037 obo:CL_0011026) +SubClassOf(obo:CL_0000037 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002)) +SubClassOf(obo:CL_0000037 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004)) +SubClassOf(obo:CL_0000037 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012)) +SubClassOf(obo:CL_0000037 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020)) +SubClassOf(obo:CL_0000037 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001024)) +SubClassOf(obo:CL_0000037 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001083)) +SubClassOf(obo:CL_0000037 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084)) +SubClassOf(obo:CL_0000037 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289)) +SubClassOf(obo:CL_0000037 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001839)) +SubClassOf(obo:CL_0000037 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001889)) +SubClassOf(obo:CL_0000037 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002978)) +SubClassOf(obo:CL_0000037 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002981)) SubClassOf(obo:CL_0000037 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000566)) +SubClassOf(obo:CL_0000037 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002244)) # Class: obo:CL_0000038 (erythroid progenitor cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "ISBN:0721601464") obo:IAO_0000115 obo:CL_0000038 "A progenitor cell committed to the erythroid lineage.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000038 "BTO:0004911") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000038 "ZFA:0009015") AnnotationAssertion(Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_0000038 "BFU-E") AnnotationAssertion(Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_0000038 "CFU-E") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000038 "blast forming unit erythroid") @@ -4841,6 +4941,7 @@ SubClassOf(obo:CL_0000038 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000050)) # Class: obo:CL_0000039 (germ line cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0721662544") obo:IAO_0000115 obo:CL_0000039 "A cell that is within the developmental lineage of gametes and is able to pass along its genetic material to offspring.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000039 "ZFA:0009016") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000039 cl:general_cell_types_upper_slim) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000039 ubprop:_upper_level) AnnotationAssertion(rdfs:comment obo:CL_0000039 "Originally this term had some plant germ line cell children.") @@ -4853,6 +4954,7 @@ SubClassOf(obo:CL_0000039 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0022414)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "PMID:1104740") Annotation(oboInOwl:hasDbXref "http://en.wikipedia.org/wiki/Monoblast") Annotation(oboInOwl:hasDbXref "http://www.copewithcytokines.de") obo:IAO_0000115 obo:CL_0000040 "A myeloid progenitor cell committed to the monocyte lineage. This cell is CD11b-positive, has basophilic cytoplasm, euchromatin, and the presence of a nucleolus.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000040 "CALOHA:TS-1195") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000040 "FMA:83553") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000040 "ZFA:0009017") AnnotationAssertion(Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_0000040 "CFU-M") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000040 "colony forming unit macrophage") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000040 "colony forming unit monocyte") @@ -4860,7 +4962,12 @@ AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000040 "monocyte stem cel AnnotationAssertion(rdfs:comment obo:CL_0000040 "Morphology: mononuclear cell, diameter 12-20 _M, non-granular, N/C ratio 3/1 - 4/1; markers: CD11b (shared with many other myeloid cells); location: Adult: bone marrow; fetal: liver, Yolk Sac; role or process: hematopoiesis, monocyte development; lineage: hematopoietic, myeloid.") AnnotationAssertion(rdfs:label obo:CL_0000040 "monoblast") EquivalentClasses(obo:CL_0000040 ObjectIntersectionOf(obo:CL_0002194 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017503) ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0000791) ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0005730) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001012) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030224))) +SubClassOf(obo:CL_0000040 obo:CL_0000763) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000040 obo:CL_0002194) +SubClassOf(obo:CL_0000040 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017503)) +SubClassOf(obo:CL_0000040 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0000791)) +SubClassOf(obo:CL_0000040 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0005730)) +SubClassOf(obo:CL_0000040 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001012)) SubClassOf(obo:CL_0000040 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002009)) # Class: obo:CL_0000041 (mature eosinophil) @@ -4877,17 +4984,36 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000041 core:human_reference_atlas) AnnotationAssertion(rdfs:comment obo:CL_0000041 "Eosinophils are CD125-positive (IL-5R), GM-CSFR-positive, IL-3R-positive, VLA4-positive. They can also express MHC Class I & II, CD4, CD9, CD11a, CD11b, CD11c, CD13, CD15, CD16, CD17, CD18, CD24, CD25,CD28, CD29, CD32, CD33, CD35, CD37, CD39, CD43, CD44, CD45, CD45RB, CD45RO, CD46, CD47, CD48, CD49d, CD49f, CD50, CD52, CD53, CD54, CD55, CD58, CD59, CD62L, CD63, CD65, CD66, CD69, CD71, CD76, CD80, CD81, CD82, CD86, CD87, CD88, CD89, CD92, CD95, CD97, CD98, CD99, CD100, CD101, CD116, CD117, CD119, CD120, CD123, CD124, CD125, CD131, CD137, CD139, CD148, CD149, CD151, CD153, CD156, CD162, CD161, CD162, CD165, CD174, CD182, CD183, CD191, CD192, CD193, CD196, CD213, IL9R, ad integrin, beta-7 integrin, FceRI, IL13Ra1, TGFbR, PAFR, LTB4R, C3aR, CystLT1R, CystLT2R, fMLPR, CRTH2 (PGD2 receptor), histamine 4R, IDO, KYN, PAR-2, Siglec-8, Siglec-10, LIR1, LIR2, LIR3, LIR7, TLR7, TLR8, and VLA-4. Eosinophils can also secrete CXCL1, eotaxin-1, GM-CSF, IL-2, IL-3, IL-4, IL-5, IL-6, IL-8, IL-10, IL-12, IL-13, IL-16, IL-18, IFN-gamma, LTC4, MIP-1alpha, NGF, PAF, RANTES, substance P, TGF-alpha, TGF-beta, TNF-alpha, and VIP.") AnnotationAssertion(rdfs:label obo:CL_0000041 "mature eosinophil") EquivalentClasses(obo:CL_0000041 ObjectIntersectionOf(obo:CL_0000771 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000007152) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000007857) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000007858) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000014046) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000014047) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000022006) ObjectSomeValuesFrom(obo:BFO_0000051 ObjectIntersectionOf(obo:GO_0005634 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001979))) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000009129) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002495) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002540) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045730))) +SubClassOf(obo:CL_0000041 obo:CL_0000145) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000041 obo:CL_0000771) +SubClassOf(obo:CL_0000041 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000007152)) +SubClassOf(obo:CL_0000041 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000007857)) +SubClassOf(obo:CL_0000041 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000007858)) +SubClassOf(obo:CL_0000041 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000014046)) +SubClassOf(obo:CL_0000041 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000014047)) +SubClassOf(obo:CL_0000041 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000022006)) +SubClassOf(obo:CL_0000041 ObjectSomeValuesFrom(obo:BFO_0000051 ObjectIntersectionOf(obo:GO_0005634 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001979)))) +SubClassOf(obo:CL_0000041 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000009129)) SubClassOf(obo:CL_0000041 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000774)) +SubClassOf(obo:CL_0000041 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002495)) +SubClassOf(obo:CL_0000041 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002540)) +SubClassOf(obo:CL_0000041 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045730)) # Class: obo:CL_0000042 (neutrophilic myeloblast) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "ISBN:0721601464") Annotation(oboInOwl:hasDbXref "PMID:12560239") Annotation(oboInOwl:hasDbXref "PMID:15514007") obo:IAO_0000115 obo:CL_0000042 "A myeloblast committed to the neutrophil lineage. This cell type is GATA-1 positive, C/EBPa-positive, AML-1-positive, c-myb-positive and has low expression of PU.1 transcription factor.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000042 "ZFA:0009018") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000042 "neutrophilic granuloblast") AnnotationAssertion(rdfs:comment obo:CL_0000042 "These cells are CD11b-negative, CD15-negative, CD16-negative, CD35-negative, CD49d-positive, CD68-positive, lactotransferrin-negative, and fMLP receptor-negative. They are found in the Band 3 fraction.") AnnotationAssertion(rdfs:label obo:CL_0000042 "neutrophilic myeloblast") EquivalentClasses(obo:CL_0000042 ObjectIntersectionOf(obo:CL_0000835 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001944) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000005307) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000007857) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000010799) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000014362) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030223))) +SubClassOf(obo:CL_0000042 obo:CL_0000834) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000042 obo:CL_0000835) +SubClassOf(obo:CL_0000042 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001944)) +SubClassOf(obo:CL_0000042 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000005307)) +SubClassOf(obo:CL_0000042 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000007857)) +SubClassOf(obo:CL_0000042 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000010799)) +SubClassOf(obo:CL_0000042 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000014362)) SubClassOf(obo:CL_0000042 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000834)) # Class: obo:CL_0000043 (mature basophil) @@ -4904,7 +5030,14 @@ AnnotationAssertion(rdfs:label obo:CL_0000043 "mature basophil") EquivalentClasses(obo:CL_0000043 ObjectIntersectionOf(obo:CL_0000767 ObjectSomeValuesFrom(obo:BFO_0000051 ObjectIntersectionOf(obo:GO_0005634 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001979))) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002349) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002351) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002830) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0008015) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032616) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032633) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0048295))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000043 obo:CL_0000767) SubClassOf(obo:CL_0000043 obo:CL_0002274) +SubClassOf(obo:CL_0000043 ObjectSomeValuesFrom(obo:BFO_0000051 ObjectIntersectionOf(obo:GO_0005634 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001979)))) SubClassOf(obo:CL_0000043 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000770)) +SubClassOf(obo:CL_0000043 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002349)) +SubClassOf(obo:CL_0000043 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002351)) +SubClassOf(obo:CL_0000043 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002830)) +SubClassOf(obo:CL_0000043 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032616)) +SubClassOf(obo:CL_0000043 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032633)) +SubClassOf(obo:CL_0000043 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0048295)) # Class: obo:CL_0000044 (obo:CL_0000044) @@ -4932,10 +5065,12 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:30639325") obo:IAO_00001 AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000047 "BTO:0002881") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000047 "CALOHA:TS-2360") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000047 "FMA:86684") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000047 "ZFA:0009019") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000047 "NSC") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:16305818") oboInOwl:hasExactSynonym obo:CL_0000047 "neuronal stem cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000047 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000047 "neural stem cell") +SubClassOf(obo:CL_0000047 obo:BFO_0000002) SubClassOf(obo:CL_0000047 obo:CL_0002319) SubClassOf(obo:CL_0000047 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000133)) @@ -4943,18 +5078,22 @@ SubClassOf(obo:CL_0000047 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000133)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") obo:IAO_0000115 obo:CL_0000048 "A stem cell that can give rise to multiple lineages of cells.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000048 "FMA:84789") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000048 "ZFA:0009020") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000048 "multi-fate stem cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000048 "multifate stem cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000048 "multipotent cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000048 "multipotent stem cell") AnnotationAssertion(rdfs:label obo:CL_0000048 "multi fate stem cell") EquivalentClasses(obo:CL_0000048 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001402) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0017145))) +SubClassOf(obo:CL_0000048 obo:CL_0000034) +SubClassOf(obo:CL_0000048 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001402)) # Class: obo:CL_0000049 (common myeloid progenitor) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "ISBN:0878932437") Annotation(oboInOwl:hasDbXref "MESH:D023461") obo:IAO_0000115 obo:CL_0000049 "A progenitor cell committed to myeloid lineage, including the megakaryocyte and erythroid lineages.") AnnotationAssertion(obo:RO_0002175 obo:CL_0000049 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000049 "BTO:0004730") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000049 "ZFA:0009021") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000049 "common myeloid precursor") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ISBN:0878932437") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_0000049 "CFU-GEMM") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ISBN:0878932437") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_0000049 "CFU-S") @@ -4976,6 +5115,7 @@ DisjointClasses(obo:CL_0000049 obo:CL_0000557) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "GOC:dsd") Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "MESH:D055015") Annotation(oboInOwl:hasDbXref "PMID:16647566") Annotation(oboInOwl:hasDbXref "http://en.wikipedia.org/wiki/Megakaryocyte-erythroid_progenitor_cell") obo:IAO_0000115 obo:CL_0000050 "A progenitor cell committed to the megakaryocyte and erythroid lineages.") AnnotationAssertion(obo:RO_0002175 obo:CL_0000050 obo:NCBITaxon_9606) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000050 "ZFA:0009022") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000050 "CFU-EM") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000050 "CFU-MegE") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000050 "MEP") @@ -4988,8 +5128,11 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000050 core:human_reference_atlas) AnnotationAssertion(rdfs:comment obo:CL_0000050 "MEPs are reportedly CD19-negative, CD34-negative, CD45RA-negative, CD110-positive, CD117-positive, and SCA1-negative and reportedly express the transcription factors GATA-1 and NF-E2.") AnnotationAssertion(rdfs:label obo:CL_0000050 "megakaryocyte-erythroid progenitor cell") EquivalentClasses(obo:CL_0000050 ObjectIntersectionOf(obo:CL_0002032 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030218) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030219))) +SubClassOf(obo:CL_0000050 obo:CL_0000763) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000050 obo:CL_0002032) -SubClassOf(obo:CL_0000050 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000049)) +SubClassOf(obo:CL_0000050 obo:CL_0011026) +SubClassOf(obo:CL_0000050 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030218)) +SubClassOf(obo:CL_0000050 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030219)) DisjointClasses(obo:CL_0000050 obo:CL_0000557) DisjointClasses(obo:CL_0000050 obo:CL_0002009) @@ -4997,6 +5140,7 @@ DisjointClasses(obo:CL_0000050 obo:CL_0002009) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "GOC:dsd") Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:10407577") Annotation(oboInOwl:hasDbXref "PMID:16551251") obo:IAO_0000115 obo:CL_0000051 "A oligopotent progenitor cell committed to the lymphoid lineage.") AnnotationAssertion(obo:RO_0002175 obo:CL_0000051 obo:NCBITaxon_9606) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000051 "ZFA:0009023") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000051 "common lymphocyte precursor") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000051 "common lymphocyte progenitor") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000051 "common lymphoid precursor") @@ -5012,12 +5156,15 @@ AnnotationAssertion(rdfs:comment obo:CL_0000051 "CLP are CD7-positive, CD10-posi AnnotationAssertion(rdfs:label obo:CL_0000051 "common lymphoid progenitor") EquivalentClasses(obo:CL_0000051 ObjectIntersectionOf(obo:CL_0002032 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030098))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000051 obo:CL_0002032) +SubClassOf(obo:CL_0000051 obo:CL_0011026) +SubClassOf(obo:CL_0000051 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030098)) # Class: obo:CL_0000052 (totipotent stem cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0000052 "A stem cell from which all cells of the body can form.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000052 "FMA:84790") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000052 "MESH:D039901") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000052 "ZFA:0009024") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000052 "totipotential stem cell") AnnotationAssertion(rdfs:label obo:CL_0000052 "totipotent stem cell") SubClassOf(obo:CL_0000052 obo:CL_0000723) @@ -5042,17 +5189,17 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000055 "blast cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000055 cl:cellxgene_subset) AnnotationAssertion(rdfs:comment obo:CL_0000055 "define using PATO mulit-potent or oligopotent?") AnnotationAssertion(rdfs:label obo:CL_0000055 "non-terminally differentiated cell") -SubClassOf(obo:CL_0000055 obo:CL_0000000) -SubClassOf(obo:CL_0000055 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030154)) +SubClassOf(obo:CL_0000055 obo:CL_0011115) # Class: obo:CL_0000056 (myoblast) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "MESH:D032446") Annotation(oboInOwl:hasDbXref "PMID:21849021") obo:IAO_0000115 obo:CL_0000056 "A cell that is commited to differentiating into a muscle cell. Embryonic myoblasts develop from the mesoderm. They undergo proliferation, migrate to their various sites, and then differentiate into the appropriate form of myocytes. Myoblasts also occur as transient populations of cells in muscles undergoing repair.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000056 "BTO:0000222") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000056 "CALOHA:TS-0650") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000056 "FBbt:00005083") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000056 "FBbt:00005083") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000056 "FMA:70335") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000056 "VHOG:0001529") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000056 "ZFA:0009025") AnnotationAssertion(rdfs:label obo:CL_0000056 "myoblast") SubClassOf(obo:CL_0000056 obo:CL_0000680) @@ -5065,11 +5212,13 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000057 "CALOHA:TS-0362") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000057 "FMA:63877") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000057 "NCIT:C12482") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000057 "VHOG:0001482") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000057 "ZFA:0009026") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000057 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000057 cl:general_cell_types_upper_slim) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000057 core:human_reference_atlas) AnnotationAssertion(rdfs:comment obo:CL_0000057 "These cells may be vimentin-positive, fibronectin-positive, fsp1-positive, MMP-1-positive, collagen I-positive, collagen III-positive, and alpha-SMA-negative.") AnnotationAssertion(rdfs:label obo:CL_0000057 "fibroblast") +SubClassOf(obo:CL_0000057 obo:BFO_0000002) SubClassOf(obo:CL_0000057 obo:CL_0002320) SubClassOf(obo:CL_0000057 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000134)) @@ -5078,8 +5227,10 @@ SubClassOf(obo:CL_0000057 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000134)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "GO_REF:0000034") Annotation(oboInOwl:hasDbXref "ISBN:0618947256") obo:IAO_0000115 obo:CL_0000058 "Skeletogenic cell that is typically non-terminally differentiated, secretes an avascular, GAG rich matrix; is not buried in cartilage tissue matrix, retains the ability to divide, located adjacent to cartilage tissue (including within the perichondrium), and develops from prechondroblast (and thus prechondrogenic) cell.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000058 "BTO:0003607") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000058 "FMA:66783") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000058 "ZFA:0009027") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000058 "chrondoplast") AnnotationAssertion(rdfs:label obo:CL_0000058 "chondroblast") +SubClassOf(obo:CL_0000058 obo:BFO_0000002) SubClassOf(obo:CL_0000058 obo:CL_0000055) SubClassOf(obo:CL_0000058 obo:CL_0002320) SubClassOf(obo:CL_0000058 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0007009)) @@ -5096,6 +5247,7 @@ AnnotationAssertion(rdfs:comment obo:CL_0000059 "non-encoded relationship from V AnnotationAssertion(rdfs:label obo:CL_0000059 "ameloblast") SubClassOf(obo:CL_0000059 obo:CL_0000146) SubClassOf(obo:CL_0000059 obo:CL_0000151) +SubClassOf(obo:CL_0000059 obo:CL_0002077) SubClassOf(obo:CL_0000059 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005176)) SubClassOf(obo:CL_0000059 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0007000)) SubClassOf(obo:CL_0000059 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0097186)) @@ -5109,11 +5261,13 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000060 "BTO:0001769") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000060 "CALOHA:TS-0696") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000060 "FMA:62999") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000060 "MESH:D009804") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000060 "ZFA:0009029") AnnotationAssertion(rdfs:comment obo:CL_0000060 "legacy def: One of the cells forming the outer surface of dental pulp that produces tooth dentin.") AnnotationAssertion(rdfs:label obo:CL_0000060 "odontoblast") SubClassOf(obo:CL_0000060 obo:CL_0000055) +SubClassOf(obo:CL_0000060 obo:CL_0000710) SubClassOf(obo:CL_0000060 obo:CL_0002148) -SubClassOf(obo:CL_0000060 obo:CL_0002159) +SubClassOf(obo:CL_0000060 obo:CL_0011026) SubClassOf(obo:CL_0000060 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005176)) SubClassOf(obo:CL_0000060 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0007003)) SubClassOf(obo:CL_0000060 ObjectSomeValuesFrom(obo:RO_0003000 obo:UBERON_0001751)) @@ -5123,6 +5277,7 @@ SubClassOf(obo:CL_0000060 ObjectSomeValuesFrom(obo:RO_0003000 obo:UBERON_0001751 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GO_REF:0000034") Annotation(oboInOwl:hasDbXref "ISBN:0781733901") obo:IAO_0000115 obo:CL_0000061 "Skeletogenic cell that produces cementum (a bony substance that covers the root of a tooth), is part of the odontogenic papilla, and develops from a precementoblast cell.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000061 "CALOHA:TS-1164") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000061 "FMA:63002") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000061 "ZFA:0009030") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000061 "cementum secreting cell") AnnotationAssertion(rdfs:comment obo:CL_0000061 "Legacy def: A cell of ectomesenchymal origin that aids in the formation the cementum layer on the roots of teeth.") AnnotationAssertion(rdfs:label obo:CL_0000061 "cementoblast") @@ -5138,11 +5293,13 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GO_REF:0000034") Annotation(o AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000062 "BTO:0001593") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000062 "CALOHA:TS-0720") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000062 "FMA:66780") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000062 "ZFA:0009031") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000062 cl:cellxgene_subset) AnnotationAssertion(rdfs:comment obo:CL_0000062 "non-encoded relationships from VSAO - capable_of_producing VSAO:0000020") AnnotationAssertion(rdfs:label obo:CL_0000062 "osteoblast") SubClassOf(obo:CL_0000062 obo:CL_0000055) SubClassOf(obo:CL_0000062 obo:CL_0002320) +SubClassOf(obo:CL_0000062 obo:CL_0011026) SubClassOf(obo:CL_0000062 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0007010)) SubClassOf(obo:CL_0000062 ObjectSomeValuesFrom(obo:RO_0003000 obo:UBERON_0008883)) @@ -5161,9 +5318,12 @@ AnnotationAssertion(owl:deprecated obo:CL_0000063 "true"^^xsd:boolean) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0000064 "A cell that has a filiform extrusion of the cell surface.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000064 "VHOG:0001532") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000064 "XAO:0000031") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000064 "ZFA:0009032") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000064 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000064 "ciliated cell") EquivalentClasses(obo:CL_0000064 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0005929))) +SubClassOf(obo:CL_0000064 obo:CL_0000000) +SubClassOf(obo:CL_0000064 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0005929)) # Class: obo:CL_0000065 (ependymal cell) @@ -5171,12 +5331,13 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl AnnotationAssertion(obo:RO_0002175 obo:CL_0000065 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000065 "BTO:0001724") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000065 "FMA:70550") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000065 "ZFA:0009033") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000065 "ependymocyte") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000065 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000065 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000065 "ependymal cell") +SubClassOf(obo:CL_0000065 obo:CL_0000067) SubClassOf(obo:CL_0000065 obo:CL_0000710) -SubClassOf(obo:CL_0000065 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0005929)) # Class: obo:CL_0000066 (epithelial cell) @@ -5185,9 +5346,10 @@ AnnotationAssertion(obo:RO_0002175 obo:CL_0000066 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000066 "BTO:0000414") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000066 "CALOHA:TS-2026") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000066 "CARO:0000077") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000066 "FBbt:00000124") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000066 "FBbt:00000124") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000066 "FMA:66768") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000066 "WBbt:0003672") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000066 "ZFA:0009034") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000066 "epitheliocyte") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000066 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000066 cl:general_cell_types_upper_slim) @@ -5202,17 +5364,22 @@ DisjointClasses(obo:CL_0000066 obo:CL_0000738) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0000067 "An epithelial cell that has a cilia.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000067 "FMA:70605") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000067 "ZFA:0009035") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000067 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000067 "ciliated epithelial cell") EquivalentClasses(obo:CL_0000067 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0005929))) +SubClassOf(obo:CL_0000067 obo:CL_0000064) +SubClassOf(obo:CL_0000067 obo:CL_0000066) # Class: obo:CL_0000068 (duct epithelial cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "https://orcid.org/0000-0001-5208-3432") obo:IAO_0000115 obo:CL_0000068 "An epithelial cell that is part of a duct.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000068 "ZFA:0009372") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000068 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000068 "duct epithelial cell") EquivalentClasses(obo:CL_0000068 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000058))) SubClassOf(obo:CL_0000068 obo:CL_0000066) +SubClassOf(obo:CL_0000068 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000058)) # Class: obo:CL_0000069 (branched duct epithelial cell) @@ -5228,6 +5395,7 @@ AnnotationAssertion(owl:deprecated obo:CL_0000070 "true"^^xsd:boolean) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0000071 "An endothelial cell that lines the vasculature.") AnnotationAssertion(obo:RO_0002175 obo:CL_0000071 obo:NCBITaxon_9606) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000071 "ZFA:0009036") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000071 "cuboidal endothelial cell of vascular tree") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000071 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000071 core:human_reference_atlas) @@ -5235,13 +5403,14 @@ AnnotationAssertion(rdfs:label obo:CL_0000071 "blood vessel endothelial cell") EquivalentClasses(obo:CL_0000071 ObjectIntersectionOf(obo:CL_0000076 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004638))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000071 obo:CL_0000076) SubClassOf(obo:CL_0000071 obo:CL_0002139) +SubClassOf(obo:CL_0000071 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004638)) SubClassOf(obo:CL_0000071 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002546)) # Class: obo:CL_0000072 (non-branched duct epithelial cell) AnnotationAssertion(rdfs:label obo:CL_0000072 "non-branched duct epithelial cell") SubClassOf(obo:CL_0000072 obo:CL_0000068) -SubClassOf(obo:CL_0000072 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000222)) +SubClassOf(obo:CL_0000072 obo:CL_0002078) # Class: obo:CL_0000073 (obsolete barrier epithelial cell) @@ -5261,6 +5430,7 @@ AnnotationAssertion(owl:deprecated obo:CL_0000074 "true"^^xsd:boolean) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GO:0002065") Annotation(oboInOwl:hasDbXref "https://orcid.org/0000-0001-5208-3432") obo:IAO_0000115 obo:CL_0000075 "A columnar/cuboidal epithelial cell is a cell usually found in a two dimensional sheet with a free surface. Columnar/cuboidal epithelial cells take on the shape of a column or cube.") AnnotationAssertion(obo:RO_0002175 obo:CL_0000075 obo:NCBITaxon_9606) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000075 "ZFA:0009038") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000075 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000075 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000075 "columnar/cuboidal epithelial cell") @@ -5269,6 +5439,7 @@ SubClassOf(obo:CL_0000075 obo:CL_0000066) # Class: obo:CL_0000076 (squamous epithelial cell) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000076 "CALOHA:TS-1249") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000076 "ZFA:0009039") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000076 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000076 "squamous epithelial cell") SubClassOf(obo:CL_0000076 obo:CL_0000066) @@ -5278,42 +5449,51 @@ SubClassOf(obo:CL_0000076 obo:CL_0000066) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0721662544") obo:IAO_0000115 obo:CL_0000077 "A flattened epithelial cell of mesenchymal origin that lines the serous cavity.") AnnotationAssertion(obo:RO_0002175 obo:CL_0000077 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000077 "FMA:66773") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000077 "ZFA:0009040") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000077 "mesotheliocyte") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000077 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000077 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000077 "mesothelial cell") SubClassOf(obo:CL_0000077 obo:CL_0000076) SubClassOf(obo:CL_0000077 obo:CL_0000213) -SubClassOf(obo:CL_0000077 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000222)) +SubClassOf(obo:CL_0000077 obo:CL_0002078) # Class: obo:CL_0000078 (peridermal cell) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000078 "ZFA:0009041") AnnotationAssertion(rdfs:label obo:CL_0000078 "peridermal cell") SubClassOf(obo:CL_0000078 obo:CL_0000076) # Class: obo:CL_0000079 (stratified epithelial cell) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000079 "ZFA:0009042") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000079 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000079 "stratified epithelial cell") +SubClassOf(obo:CL_0000079 obo:BFO_0000002) SubClassOf(obo:CL_0000079 obo:CL_0000066) SubClassOf(obo:CL_0000079 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000357)) # Class: obo:CL_0000080 (circulating cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") obo:IAO_0000115 obo:CL_0000080 "A cell which moves among different tissues of the body, via blood, lymph, or other medium.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000080 "ZFA:0009043") AnnotationAssertion(rdfs:label obo:CL_0000080 "circulating cell") EquivalentClasses(obo:CL_0000080 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000179))) +SubClassOf(obo:CL_0000080 obo:CL_0000000) +SubClassOf(obo:CL_0000080 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000179)) # Class: obo:CL_0000081 (blood cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0000081 "A cell found predominately in the blood.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000081 "FMA:62844") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000081 "MESH:D001773") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000081 "ZFA:0009044") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000081 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000081 cl:general_cell_types_upper_slim) AnnotationAssertion(rdfs:label obo:CL_0000081 "blood cell") EquivalentClasses(obo:CL_0000081 ObjectIntersectionOf(obo:CL_0000988 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0008015))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000081 obo:CL_0000988) +SubClassOf(obo:CL_0000081 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0008015)) # Class: obo:CL_0000082 (epithelial cell of lung) @@ -5323,16 +5503,21 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000082 "lung epithelial cel AnnotationAssertion(oboInOwl:inSubset obo:CL_0000082 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000082 "epithelial cell of lung") EquivalentClasses(obo:CL_0000082 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002048))) +SubClassOf(obo:CL_0000082 obo:CL_0000066) SubClassOf(obo:CL_0000082 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000115)) # Class: obo:CL_0000083 (epithelial cell of pancreas) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0000083 "An epithelial cell of the pancreas.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000083 "BTO:0000028") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000083 "ZFA:0009045") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000083 "pancreas epithelial cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000083 "pancreatic epithelial cell") AnnotationAssertion(rdfs:label obo:CL_0000083 "epithelial cell of pancreas") EquivalentClasses(obo:CL_0000083 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001264))) +SubClassOf(obo:CL_0000083 obo:BFO_0000002) +SubClassOf(obo:CL_0000083 obo:CL_0000066) +SubClassOf(obo:CL_0000083 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001264)) SubClassOf(obo:CL_0000083 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000223)) # Class: obo:CL_0000084 (T cell) @@ -5344,6 +5529,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000084 "CALOHA:TS-1001") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000084 "FMA:62870") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000084 "MESH:D013601") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000084 "VHOG:0001479") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000084 "ZFA:0009046") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000084 "T lymphocyte") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000084 "T-cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000084 "T-lymphocyte") @@ -5356,6 +5542,7 @@ AnnotationAssertion(rdfs:label obo:CL_0000084 "T cell") EquivalentClasses(obo:CL_0000084 ObjectIntersectionOf(obo:CL_0000542 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002456))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000084 obo:CL_0000542) SubClassOf(obo:CL_0000084 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000827)) +SubClassOf(obo:CL_0000084 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002456)) DisjointClasses(obo:CL_0000084 obo:CL_0000945) # Class: obo:CL_0000085 (obsolete germ line stem cell (sensu Vertebrata)) @@ -5424,6 +5611,12 @@ AnnotationAssertion(rdfs:comment obo:CL_0000091 "Markers: Mouse: F4/80+, CD11b-l AnnotationAssertion(rdfs:label obo:CL_0000091 "Kupffer cell") EquivalentClasses(obo:CL_0000091 ObjectIntersectionOf(obo:CL_0000864 ObjectSomeValuesFrom(obo:RO_0001025 obo:UBERON_0001281) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001813) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001925) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002064) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0034102) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001012))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000091 obo:CL_0000864) +SubClassOf(obo:CL_0000091 ObjectSomeValuesFrom(obo:RO_0001025 obo:UBERON_0001281)) +SubClassOf(obo:CL_0000091 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001813)) +SubClassOf(obo:CL_0000091 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001925)) +SubClassOf(obo:CL_0000091 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002064)) +SubClassOf(obo:CL_0000091 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0034102)) +SubClassOf(obo:CL_0000091 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001012)) # Class: obo:CL_0000092 (osteoclast) @@ -5432,6 +5625,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000092 "BTO:0000968") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000092 "CALOHA:TS-0721") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000092 "FMA:66781") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000092 "MESH:D010010") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000092 "ZFA:0009047") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000092 "chondroclast") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000092 cl:cellxgene_subset) AnnotationAssertion(rdfs:comment obo:CL_0000092 "Morphology: Highly vesicular; markers: Surface: RANK, cFMS (MCSF receptor); Secreted: cathepsin K and TRAP (tartate resistant acid phosphatase); transcription factors: PU.1, cFOS, MITF, NFkB (p52); role or process: tissue remodelling: bone resorption; lineage: hematopoietic, myeloid.") @@ -5440,7 +5634,15 @@ EquivalentClasses(obo:CL_0000092 ObjectIntersectionOf(obo:CL_0000766 ObjectSomeV SubClassOf(obo:CL_0000092 obo:CL_0000518) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000092 obo:CL_0000766) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000092 obo:CL_0001035) +SubClassOf(obo:CL_0000092 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001850)) +SubClassOf(obo:CL_0000092 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001937)) +SubClassOf(obo:CL_0000092 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001944)) +SubClassOf(obo:CL_0000092 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000007597)) +SubClassOf(obo:CL_0000092 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000011178)) +SubClassOf(obo:CL_0000092 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001954)) +SubClassOf(obo:CL_0000092 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002062)) SubClassOf(obo:CL_0000092 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000576)) +SubClassOf(obo:CL_0000092 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045453)) # Class: obo:CL_0000093 (obsolete osteochondroclast) @@ -5457,6 +5659,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000094 "BTO:0000539") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000094 "BTO:0001026") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000094 "CALOHA:TS-0422") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000094 "FMA:62854") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000094 "ZFA:0009048") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000094 "granular leucocyte") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000094 "granular leukocyte") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000094 "polymorphonuclear leukocyte") @@ -5464,12 +5667,22 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000094 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000094 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000094 "granulocyte") EquivalentClasses(obo:CL_0000094 ObjectIntersectionOf(obo:CL_0000766 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0030141) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001024) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001012) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001332) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001969) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0008015))) +SubClassOf(obo:CL_0000094 obo:CL_0000081) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000094 obo:CL_0000766) +SubClassOf(obo:CL_0000094 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0030141)) +SubClassOf(obo:CL_0000094 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002)) +SubClassOf(obo:CL_0000094 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020)) +SubClassOf(obo:CL_0000094 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001024)) +SubClassOf(obo:CL_0000094 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084)) +SubClassOf(obo:CL_0000094 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001012)) +SubClassOf(obo:CL_0000094 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001332)) +SubClassOf(obo:CL_0000094 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001969)) # Class: obo:CL_0000095 (neuron associated cell) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000095 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000095 "neuron associated cell") +SubClassOf(obo:CL_0000095 obo:BFO_0000002) SubClassOf(obo:CL_0000095 obo:CL_0002319) SubClassOf(obo:CL_0000095 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000133)) @@ -5481,6 +5694,7 @@ AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000096 "poly") AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000096 "polymorphonuclear leucocyte") AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000096 "polymorphonuclear leukocyte") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000096 "BTO:0003473") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000096 "ZFA:0009049") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000096 "PMN") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000096 "mature neutrocyte") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000096 "mature neutrophil leucocyte") @@ -5494,7 +5708,23 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000096 core:human_reference_atlas) AnnotationAssertion(rdfs:comment obo:CL_0000096 "Neutrophils are also capable of secreting GRO-alpha, IL-1beta, IL-1ra, IL-3, IL-12, IP-10, MIG, MIP-1alpha, MIP-1beta, TGF-beta, TNF-alpha, VEGF, and anti-microbial peptides. They can positively influence the chemotaxis of basophils, T-cells, monocytes, macrophages, dendritic cells, and other neutrophils. Neutrophils are also CD35-positive, CD64-positive, CD89-positive, CD184-positive, and fMLP receptor-positive Ly-6G-positive (mouse), TLR2-low, TLR4-low, and lineage-negative (CD2, CD3, CD5, CD9, CD19, CD36, CD49d, CD56, CD61, CD235a (glycophorin-A)).") AnnotationAssertion(rdfs:label obo:CL_0000096 "mature neutrophil") EquivalentClasses(obo:CL_0000096 ObjectIntersectionOf(obo:CL_0000775 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017500) ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0070820) ObjectSomeValuesFrom(obo:BFO_0000051 ObjectIntersectionOf(obo:GO_0005634 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001979))) ObjectSomeValuesFrom(obo:CL_4030045 obo:PR_000009978) ObjectSomeValuesFrom(obo:CL_4030045 obo:PR_000010543) ObjectSomeValuesFrom(obo:CL_4030045 obo:PR_000010799) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001256) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001257) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001456) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001483) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001879) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001944) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000007597) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002536) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002690) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0006909) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032637))) +SubClassOf(obo:CL_0000096 obo:CL_0000234) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000096 obo:CL_0000775) +SubClassOf(obo:CL_0000096 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017500)) +SubClassOf(obo:CL_0000096 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0070820)) +SubClassOf(obo:CL_0000096 ObjectSomeValuesFrom(obo:BFO_0000051 ObjectIntersectionOf(obo:GO_0005634 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001979)))) +SubClassOf(obo:CL_0000096 ObjectSomeValuesFrom(obo:CL_4030045 obo:PR_000009978)) +SubClassOf(obo:CL_0000096 ObjectSomeValuesFrom(obo:CL_4030045 obo:PR_000010543)) +SubClassOf(obo:CL_0000096 ObjectSomeValuesFrom(obo:CL_4030045 obo:PR_000010799)) +SubClassOf(obo:CL_0000096 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001256)) +SubClassOf(obo:CL_0000096 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001257)) +SubClassOf(obo:CL_0000096 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001456)) +SubClassOf(obo:CL_0000096 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001483)) +SubClassOf(obo:CL_0000096 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001944)) +SubClassOf(obo:CL_0000096 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000007597)) +SubClassOf(obo:CL_0000096 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002536)) +SubClassOf(obo:CL_0000096 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002690)) +SubClassOf(obo:CL_0000096 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032637)) # Class: obo:CL_0000097 (mast cell) @@ -5515,16 +5745,30 @@ AnnotationAssertion(rdfs:label obo:CL_0000097 "mast cell") EquivalentClasses(obo:CL_0000097 ObjectIntersectionOf(obo:CL_0000766 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0030141) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001865) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001255) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000006169) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002349) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002539) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002660) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002690) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002830) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030210) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000002065) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000007431))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000097 obo:CL_0000766) SubClassOf(obo:CL_0000097 obo:CL_0002274) +SubClassOf(obo:CL_0000097 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0030141)) +SubClassOf(obo:CL_0000097 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001865)) +SubClassOf(obo:CL_0000097 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001255)) +SubClassOf(obo:CL_0000097 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000006169)) SubClassOf(obo:CL_0000097 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000831)) +SubClassOf(obo:CL_0000097 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002349)) +SubClassOf(obo:CL_0000097 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002539)) +SubClassOf(obo:CL_0000097 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002660)) +SubClassOf(obo:CL_0000097 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002690)) +SubClassOf(obo:CL_0000097 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002830)) +SubClassOf(obo:CL_0000097 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030210)) +SubClassOf(obo:CL_0000097 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000002065)) +SubClassOf(obo:CL_0000097 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000007431)) # Class: obo:CL_0000098 (sensory epithelial cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0517223651") Annotation(oboInOwl:hasDbXref "ISBN:0721662544") obo:IAO_0000115 obo:CL_0000098 "A specialized epithelial cell involved in sensory perception. Restricted to special sense organs of the olfactory, gustatory, and vestibulocochlear receptor systems; contain sensory cells surrounded by supportive, non-receptive cells.") AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000098 "neuroepithelial cell") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000098 "BTO:0004301") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000098 "ZFA:0009050") AnnotationAssertion(rdfs:comment obo:CL_0000098 "The term \"neuroepithelial cell\" is used to describe both this cell type and neurecto-epithelial cell (CL:0000710).") AnnotationAssertion(rdfs:label obo:CL_0000098 "sensory epithelial cell") EquivalentClasses(obo:CL_0000098 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050906))) +SubClassOf(obo:CL_0000098 obo:CL_0000066) SubClassOf(obo:CL_0000098 obo:CL_0000197) # Class: obo:CL_0000099 (interneuron) @@ -5532,9 +5776,10 @@ SubClassOf(obo:CL_0000098 obo:CL_0000197) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "MESH:D007395") obo:IAO_0000115 obo:CL_0000099 "Most generally any neuron which is not motor or sensory. Interneurons may also refer to neurons whose axons remain within a particular brain region as contrasted with projection neurons which have axons projecting to other brain regions.") AnnotationAssertion(obo:RO_0002175 obo:CL_0000099 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000099 "BTO:0003811") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000099 "FBbt:00005125") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000099 "FBbt:00005125") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000099 "FMA:67313") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000099 "WBbt:0005113") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000099 "ZFA:0009051") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000099 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000099 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000099 "interneuron") @@ -5545,9 +5790,10 @@ SubClassOf(obo:CL_0000099 obo:CL_0000540) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D009046") Annotation(oboInOwl:hasDbXref "PMID:16875686") obo:IAO_0000115 obo:CL_0000100 "An efferent neuron that passes from the central nervous system or a ganglion toward or to a muscle and conducts an impulse that causes or inhibits movement.") AnnotationAssertion(obo:RO_0002175 obo:CL_0000100 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000100 "BTO:0000312") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000100 "FBbt:00005123") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000100 "FBbt:00005123") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000100 "FMA:83617") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000100 "WBbt:0005409") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000100 "ZFA:0009052") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000100 "motoneuron") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000100 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000100 core:human_reference_atlas) @@ -5557,17 +5803,22 @@ SubClassOf(obo:CL_0000100 obo:CL_0000527) # Class: obo:CL_0000101 (sensory neuron) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ISBN:0721662544") obo:IAO_0000115 obo:CL_0000101 "Any neuron having a sensory function; an afferent neuron conveying sensory impulses.") +AnnotationAssertion(obo:RO_0002175 obo:CL_0000101 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000101 "BTO:0001037") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000101 "FBbt:00005124") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000101 "FBbt:00005124") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000101 "FMA:84649") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000101 "MESH:D011984") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000101 "WBbt:0005759") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000101 "ZFA:0009053") +AnnotationAssertion(oboInOwl:inSubset obo:CL_0000101 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000101 "sensory neuron") EquivalentClasses(obo:CL_0000101 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050906))) SubClassOf(obo:CL_0000101 obo:CL_0000526) +SubClassOf(obo:CL_0000101 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050906)) # Class: obo:CL_0000102 (polymodal neuron) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000102 "ZFA:0009054") AnnotationAssertion(rdfs:label obo:CL_0000102 "polymodal neuron") SubClassOf(obo:CL_0000102 obo:CL_0000540) @@ -5575,23 +5826,30 @@ SubClassOf(obo:CL_0000102 obo:CL_0000540) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0444009442") obo:IAO_0000115 obo:CL_0000103 "A type of interneuron that has two neurites, usually an axon and a dendrite, extending from opposite poles of an ovoid cell body.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000103 "FMA:67282") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000103 "ZFA:0009055") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000103 cl:BDS_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000103 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000103 "bipolar neuron") EquivalentClasses(obo:CL_0000103 ObjectIntersectionOf(obo:CL_0000099 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070006))) +SubClassOf(obo:CL_0000103 obo:CL_0000099) +SubClassOf(obo:CL_0000103 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070006)) # Class: obo:CL_0000104 (multipolar neuron) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:67287") Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0000104 "A neuron with three or more neurites, usually an axon and multiple dendrites.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000104 "FMA:67287") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000104 "ZFA:0009056") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000104 cl:BDS_subset) AnnotationAssertion(rdfs:label obo:CL_0000104 "multipolar neuron") EquivalentClasses(obo:CL_0000104 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070026))) +SubClassOf(obo:CL_0000104 obo:CL_0000540) +SubClassOf(obo:CL_0000104 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070026)) # Class: obo:CL_0000105 (pseudounipolar neuron) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:67305") Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0000105 "Neuron with two neurites that are fused grossly when they protrude from the soma and bifurcate a short distance from the soma.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000105 "FMA:67305") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000105 "ZFA:0009057") AnnotationAssertion(rdfs:label obo:CL_0000105 "pseudounipolar neuron") SubClassOf(obo:CL_0000105 obo:CL_0000540) @@ -5599,6 +5857,7 @@ SubClassOf(obo:CL_0000105 obo:CL_0000540) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:67278") Annotation(oboInOwl:hasDbXref "GOC:nv") obo:IAO_0000115 obo:CL_0000106 "Neuron with one neurite that extends from the cell body.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000106 "FMA:67278") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000106 "ZFA:0009058") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000106 cl:BDS_subset) AnnotationAssertion(rdfs:label obo:CL_0000106 "unipolar neuron") SubClassOf(obo:CL_0000106 obo:CL_0000540) @@ -5607,32 +5866,39 @@ SubClassOf(obo:CL_0000106 obo:CL_0000540) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0000107 "A neuron whose cell body is within an autonomic ganglion.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000107 "FMA:80121") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000107 "ZFA:0009059") AnnotationAssertion(rdfs:label obo:CL_0000107 "autonomic neuron") EquivalentClasses(obo:CL_0000107 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002410))) -SubClassOf(obo:CL_0000107 obo:CL_0000540) +SubClassOf(obo:CL_0000107 obo:CL_2000032) +SubClassOf(obo:CL_0000107 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002410)) # Class: obo:CL_0000108 (cholinergic neuron) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0000108 "A neuron that uses acetylcholine as a vesicular neurotransmitter.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000108 "BTO:0004902") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000108 "FBbt:00007173") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000108 "FBbt:00007173") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000108 "FMA:84796") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000108 "MESH:D059329") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000108 "WBbt:0006840") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000108 "ZFA:0009060") AnnotationAssertion(rdfs:label obo:CL_0000108 "cholinergic neuron") EquivalentClasses(obo:CL_0000108 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0014055))) +SubClassOf(obo:CL_0000108 obo:CL_0000151) +SubClassOf(obo:CL_0000108 obo:CL_0000540) +SubClassOf(obo:CL_0000108 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0014055)) # Class: obo:CL_0000109 (adrenergic neuron) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000109 "MESH:D059331") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000109 "ZFA:0009061") AnnotationAssertion(rdfs:label obo:CL_0000109 "adrenergic neuron") -SubClassOf(obo:CL_0000109 obo:CL_0000540) SubClassOf(obo:CL_0000109 obo:CL_4033050) # Class: obo:CL_0000110 (peptidergic neuron) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:23040809") Annotation(oboInOwl:hasDbXref "doi:10.1016/B978-012589762-4/50021-9") obo:IAO_0000115 obo:CL_0000110 "A neuron that uses neuropeptides as transmitters.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000110 "FBbt:00004101") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000110 "FBbt:00004101") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000110 "ZFA:0009062") AnnotationAssertion(rdfs:label obo:CL_0000110 "peptidergic neuron") SubClassOf(obo:CL_0000110 obo:CL_0000540) SubClassOf(obo:CL_0000110 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002790)) @@ -5659,6 +5925,7 @@ SubClassOf(obo:CL_0000112 obo:CL_0000540) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0781735149") obo:IAO_0000115 obo:CL_0000113 "A vertebrate phagocyte with a single nucleus.") AnnotationAssertion(obo:RO_0002175 obo:CL_0000113 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000113 "BTO:0001433") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000113 "ZFA:0009064") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000113 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000113 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000113 "mononuclear phagocyte") @@ -5682,6 +5949,7 @@ AnnotationAssertion(obo:RO_0002175 obo:CL_0000115 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000115 "BTO:0001176") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000115 "CALOHA:TS-0278") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000115 "FMA:66772") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000115 "ZFA:0009065") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000115 "endotheliocyte") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000115 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000115 core:human_reference_atlas) @@ -5693,13 +5961,16 @@ SubClassOf(obo:CL_0000115 obo:CL_0002078) # Class: obo:CL_0000116 (pioneer neuron) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:cvs") Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0000116 "Pioneer neurons establish a pathway in the developing central nervous system and then undergo programmed cell death once the adult axons, which follow them, have made connections with the target site. Thus, they are a transient cell type involved in axon guidance.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000116 "FBbt:00005128") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000116 "FBbt:00005128") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000116 "ZFA:0009066") AnnotationAssertion(rdfs:label obo:CL_0000116 "pioneer neuron") SubClassOf(obo:CL_0000116 obo:CL_0000540) # Class: obo:CL_0000117 (CNS neuron (sensu Vertebrata)) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000117 "ZFA:0009067") AnnotationAssertion(rdfs:label obo:CL_0000117 "CNS neuron (sensu Vertebrata)") +SubClassOf(obo:CL_0000117 obo:BFO_0000002) SubClassOf(obo:CL_0000117 obo:CL_0000540) SubClassOf(obo:CL_0000117 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001017)) SubClassOf(obo:CL_0000117 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000031)) @@ -5708,27 +5979,32 @@ SubClassOf(obo:CL_0000117 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000031)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "WikipediaVersioned:Basket_cell&oldid=951703880") obo:IAO_0000115 obo:CL_0000118 "Basket cells are inhibitory GABAergic interneurons of the brain. In general, dendrites of basket cells are free branching and contain smooth spines. Axons are highly branched. The branched axonal arborizations give rise to basket-like structures that surround the soma of the target cell. Basket cells form axo-somatic synapses, meaning their synapses target somas of other cells.") AnnotationAssertion(terms:contributor obo:CL_0000118 ) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000118 "ZFA:0009068") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000118 cl:BDS_subset) AnnotationAssertion(rdfs:label obo:CL_0000118 "basket cell") EquivalentClasses(obo:CL_0000118 ObjectIntersectionOf(obo:CL_0000099 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070002) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061534))) +SubClassOf(obo:CL_0000118 obo:CL_0000104) +SubClassOf(obo:CL_0000118 obo:CL_0011005) +SubClassOf(obo:CL_0000118 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070002)) # Class: obo:CL_0000119 (cerebellar Golgi cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "NIFSTD:sao1415726815") obo:IAO_0000115 obo:CL_0000119 "Large intrinsic neuron located in the granule layer of the cerebellar cortex that extends its dendrites into the molecular layer where they receive contact from parallel fibers. The axon of the Golgi cell ramifies densely in the granule layer and enters into a complex arrangement with mossy fiber terminals and granule cell dendrites to form the cerebellar glomerulus. Llinas, Walton and Lang. In The Synaptic Organization of the Brain. 5th ed. 2004.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000119 "MESH:D000080906") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000119 "ZFA:0009069") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000119 "Golgi cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000119 "Golgi neuron") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000119 "cerebellar Golgi neuron") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000119 "cerebellum Golgi cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000119 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000119 "cerebellar Golgi cell") -SubClassOf(obo:CL_0000119 obo:CL_0011005) -SubClassOf(obo:CL_0000119 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002129)) +SubClassOf(obo:CL_0000119 obo:CL_4023057) # Class: obo:CL_0000120 (granule cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref ) obo:IAO_0000115 obo:CL_0000120 "A neuron of the vertebrate central nervous system that is small in size. This general class includes small neurons in the granular layer of the cerebellar cortex, cerebral cortex neurons that are not pyramidal cells and small neurons without axons found in the olfactory bulb.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000120 "BTO:0003393") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000120 "ZFA:0009070") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000120 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000120 "granule cell") SubClassOf(obo:CL_0000120 obo:CL_0000117) @@ -5739,6 +6015,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D011689") obo:IAO_000011 AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000121 "BTO:0001011") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000121 "CALOHA:TS-0845") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000121 "FMA:67969") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000121 "ZFA:0009071") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000121 "Purkinje neuron") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000121 "Purkinje's cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000121 "cerebellar Purkinje cell") @@ -5747,22 +6024,28 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000121 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000121 "Purkinje cell") SubClassOf(obo:CL_0000121 obo:CL_0000117) SubClassOf(obo:CL_0000121 obo:CL_0000527) +SubClassOf(obo:CL_0000121 obo:CL_1001611) SubClassOf(obo:CL_0000121 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002129)) # Class: obo:CL_0000122 (stellate neuron) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ISBN:9780123973481") obo:IAO_0000115 obo:CL_0000122 "A neuron that has dendritic processes radiating from the cell body forming a star-like shape.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000122 "BTO:0002316") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000122 "ZFA:0009072") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000122 cl:BDS_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000122 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000122 "stellate neuron") EquivalentClasses(obo:CL_0000122 ObjectIntersectionOf(obo:CL_0000117 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070010))) +SubClassOf(obo:CL_0000122 obo:CL_0000104) +SubClassOf(obo:CL_0000122 obo:CL_0000117) +SubClassOf(obo:CL_0000122 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070010)) # Class: obo:CL_0000123 (neuron associated cell (sensu Vertebrata)) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000123 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000123 "neuron associated cell (sensu Vertebrata)") SubClassOf(obo:CL_0000123 obo:CL_0000095) +SubClassOf(obo:CL_0000123 obo:CL_0000255) SubClassOf(obo:CL_0000123 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_7742)) SubClassOf(obo:CL_0000123 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000333)) @@ -5776,14 +6059,17 @@ AnnotationAssertion(owl:deprecated obo:CL_0000124 "true"^^xsd:boolean) # Class: obo:CL_0000125 (glial cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D009457") obo:IAO_0000115 obo:CL_0000125 "A non-neuronal cell of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Guide neuronal migration during development, and exchange metabolites with neurons.") +AnnotationAssertion(obo:RO_0002175 obo:CL_0000125 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000125 "BTO:0002606") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000125 "CALOHA:TS-0415") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000125 "FBbt:00005144") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000125 "FBbt:00005144") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000125 "FMA:54536") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000125 "ZFA:0009073") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000125 "neuroglial cell") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000125 "neuroglia") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000125 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000125 cl:general_cell_types_upper_slim) +AnnotationAssertion(oboInOwl:inSubset obo:CL_0000125 core:human_reference_atlas) AnnotationAssertion(rdfs:comment obo:CL_0000125 "Not all glial cells develop from glioblasts, with microglia developing from the mesoderm instead. See https://github.com/obophenotype/cell-ontology/issues/1571") AnnotationAssertion(rdfs:label obo:CL_0000125 "glial cell") SubClassOf(obo:CL_0000125 obo:CL_0000095) @@ -5794,6 +6080,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000126 "BTO:0000771") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000126 "CALOHA:TS-2027") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000126 "FMA:54538") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000126 "ZFA:0009074") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000126 "macrogliocyte") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1152/physrev.2001.81.2.871") Annotation(oboInOwl:hasSynonymType obo:OMO_0003004) oboInOwl:hasRelatedSynonym obo:CL_0000126 "macroglia") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000126 cl:cellxgene_subset) @@ -5808,6 +6095,7 @@ AnnotationAssertion(obo:RO_0002175 obo:CL_0000127 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000127 "BTO:0000099") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000127 "CALOHA:TS-0060") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000127 "FMA:54537") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000127 "ZFA:0009075") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000127 "astrocytic glia") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000127 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000127 core:human_reference_atlas) @@ -5822,6 +6110,7 @@ AnnotationAssertion(obo:RO_0002175 obo:CL_0000128 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000128 "BTO:0000962") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000128 "CALOHA:TS-0709") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000128 "FMA:54540") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000128 "ZFA:0009076") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:8734446") oboInOwl:hasExactSynonym obo:CL_0000128 "OLs") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000128 "oligodendroglia") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000128 cl:cellxgene_subset) @@ -5829,8 +6118,8 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000128 core:human_reference_atlas) AnnotationAssertion(rdfs:comment obo:CL_0000128 "Oligodendrocytes are reportedly MDP-positive and CD4-negative.") AnnotationAssertion(rdfs:label obo:CL_0000128 "oligodendrocyte") SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000128 obo:CL_0000126) +SubClassOf(obo:CL_0000128 obo:CL_4023154) SubClassOf(obo:CL_0000128 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001017)) -SubClassOf(obo:CL_0000128 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0043209)) SubClassOf(obo:CL_0000128 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002453)) # Class: obo:CL_0000129 (microglial cell) @@ -5841,6 +6130,7 @@ AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000129 "brain macrophage") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000129 "BTO:0000078") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000129 "BTO:0000962") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000129 "FMA:54539") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000129 "ZFA:0009077") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000129 "brain-resident macrophage") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "http://www.copewithcytokines.de/") oboInOwl:hasExactSynonym obo:CL_0000129 "hortega cells") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "http://www.copewithcytokines.de/") oboInOwl:hasExactSynonym obo:CL_0000129 "microgliocyte") @@ -5851,18 +6141,25 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000129 core:human_reference_atlas) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:23616747") rdfs:comment obo:CL_0000129 "Unlike macroglial cells, microglial cells arise from hematopoietic stem cells in the yolk sac during early embryogenesis that populate the central nervous system. They derive from embryonic mesoderm and are not from neuroectoderm where glioblast develops from. Markers: Mouse: CD11b+, F4/80+, CD68+. They represent ~12% of the cells in the CNS, but they are not uniformly distributed within the CNS. A normal adult mouse brain has approximately 3.5x10e6 microglia. Microglia are also reportedly CD3-negative, CD4-positive, CD8-negative, CD11b-positive, CD11c-high, CD14-negative, CD19-negative, CD45-low, CD56-negative, CD163-negative, CD200R-positive, CD281-positive, CD282-positive, CD283-positive, CD284-positive, CD285-positive, CD286-positive, CD287-positive, CD288-positive, CD289-positive, Gr1-negative, nestin-positive, and PU.1-positive.") AnnotationAssertion(rdfs:label obo:CL_0000129 "microglial cell") EquivalentClasses(obo:CL_0000129 ObjectIntersectionOf(obo:CL_0000125 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001017) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001012) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001813) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002064) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045087))) +SubClassOf(obo:CL_0000129 obo:CL_0000125) SubClassOf(obo:CL_0000129 obo:CL_0000878) +SubClassOf(obo:CL_0000129 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001012)) +SubClassOf(obo:CL_0000129 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001813)) +SubClassOf(obo:CL_0000129 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002064)) SubClassOf(obo:CL_0000129 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000222)) SubClassOf(obo:CL_0000129 ObjectSomeValuesFrom(obo:RO_0002202 ObjectIntersectionOf(obo:CL_0000034 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001040)))) +SubClassOf(obo:CL_0000129 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045087)) # Class: obo:CL_0000130 (neuron associated cell (sensu Nematoda and Protostomia)) AnnotationAssertion(rdfs:label obo:CL_0000130 "neuron associated cell (sensu Nematoda and Protostomia)") SubClassOf(obo:CL_0000130 obo:CL_0000095) +SubClassOf(obo:CL_0000130 obo:CL_0000255) SubClassOf(obo:CL_0000130 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_33317)) # Class: obo:CL_0000131 (gut endothelial cell) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000131 "ZFA:0009078") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000131 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000131 "gut endothelial cell") SubClassOf(obo:CL_0000131 obo:CL_0000115) @@ -5874,17 +6171,20 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl AnnotationAssertion(obo:RO_0002175 obo:CL_0000132 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000132 "CALOHA:TS-0172") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000132 "FMA:70614") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000132 "ZFA:0009079") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000132 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000132 cl:eye_upper_slim) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000132 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000132 "corneal endothelial cell") SubClassOf(obo:CL_0000132 obo:CL_0000115) +SubClassOf(obo:CL_0000132 obo:CL_0000710) SubClassOf(obo:CL_0000132 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001985)) SubClassOf(obo:CL_0000132 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000008)) # Class: obo:CL_0000133 (neurectodermal cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:068340007X") obo:IAO_0000115 obo:CL_0000133 "Ectoderm destined to be nervous tissue.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000133 "ZFA:0009080") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000133 "neurectoderm cell") AnnotationAssertion(rdfs:label obo:CL_0000133 "neurectodermal cell") SubClassOf(obo:CL_0000133 obo:CL_0000221) @@ -5895,6 +6195,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FB:ma") Annotation(oboInOwl:h AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000134 "BTO:0002625") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000134 "BTO:0003298") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000134 "FMA:70546") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000134 "ZFA:0009081") AnnotationAssertion(oboInOwl:hasNarrowSynonym obo:CL_0000134 "bone marrow stromal cells") AnnotationAssertion(oboInOwl:hasNarrowSynonym obo:CL_0000134 "colony-forming unit-fibroblast") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:11378515") oboInOwl:hasNarrowSynonym obo:CL_0000134 "marrow stromal cells") @@ -5924,6 +6225,8 @@ AnnotationAssertion(rdfs:label obo:CL_0000135 "fibrocyte") EquivalentClasses(obo:CL_0000135 ObjectIntersectionOf(obo:CL_0000499 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002495) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045766))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000135 obo:CL_0000499) SubClassOf(obo:CL_0000135 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000057)) +SubClassOf(obo:CL_0000135 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002495)) +SubClassOf(obo:CL_0000135 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045766)) # Class: obo:CL_0000136 (adipocyte) @@ -5932,12 +6235,14 @@ AnnotationAssertion(obo:RO_0002175 obo:CL_0000136 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000136 "BTO:0000443") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000136 "CALOHA:TS-0012") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000136 "FMA:63880") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000136 "ZFA:0009082") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000136 "adipose cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000136 "fat cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000136 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000136 cl:general_cell_types_upper_slim) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000136 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000136 "adipocyte") +SubClassOf(obo:CL_0000136 obo:BFO_0000002) SubClassOf(obo:CL_0000136 obo:CL_0000325) SubClassOf(obo:CL_0000136 obo:CL_0002320) SubClassOf(obo:CL_0000136 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000134)) @@ -5950,9 +6255,12 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000137 "BTO:0002038") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000137 "CALOHA:TS-1167") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000137 "FMA:66779") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000137 "VSAO:0000124") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000137 "ZFA:0009083") AnnotationAssertion(rdfs:comment obo:CL_0000137 "VSAO relationship simplified OBO_REL:integral_part_of VSAO:0000118") AnnotationAssertion(rdfs:label obo:CL_0000137 "osteocyte") +SubClassOf(obo:CL_0000137 obo:BFO_0000002) SubClassOf(obo:CL_0000137 obo:CL_0001035) +SubClassOf(obo:CL_0000137 obo:CL_0002320) SubClassOf(obo:CL_0000137 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002481)) SubClassOf(obo:CL_0000137 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0001040)) @@ -5962,12 +6270,12 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GO_REF:0000034") Annotation(o AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000138 "BTO:0000249") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000138 "CALOHA:TS-0138") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000138 "FMA:66782") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000138 "ZFA:0009084") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000138 "cartilage cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000138 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000138 "chondrocyte") SubClassOf(obo:CL_0000138 obo:CL_0000153) SubClassOf(obo:CL_0000138 obo:CL_0000667) -SubClassOf(obo:CL_0000138 obo:CL_0002320) SubClassOf(obo:CL_0000138 ObjectSomeValuesFrom(obo:RO_0001025 obo:UBERON_0002418)) SubClassOf(obo:CL_0000138 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000058)) @@ -5980,7 +6288,9 @@ AnnotationAssertion(owl:deprecated obo:CL_0000139 "true"^^xsd:boolean) # Class: obo:CL_0000140 (odontocyte) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GO_REF:0000034") obo:IAO_0000115 obo:CL_0000140 "Skeletogenic cell that secretes dentine matrix, is derived from odontogenic papilla. Embedded in dentine tissue, and is the transformation of a non-terminally differentiated odontoblast cell.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000140 "ZFA:0009086") AnnotationAssertion(rdfs:label obo:CL_0000140 "odontocyte") +SubClassOf(obo:CL_0000140 obo:BFO_0000002) SubClassOf(obo:CL_0000140 obo:CL_0002320) SubClassOf(obo:CL_0000140 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000060)) SubClassOf(obo:CL_0000140 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000134)) @@ -5990,6 +6300,7 @@ SubClassOf(obo:CL_0000140 ObjectSomeValuesFrom(obo:RO_0003000 obo:UBERON_0001751 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ISBN:0781733901") obo:IAO_0000115 obo:CL_0000141 "An osteocytelike cell with numerous processes, trapped in a lacuna in the cement of the tooth.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000141 "FMA:63003") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000141 "ZFA:0009087") AnnotationAssertion(rdfs:comment obo:CL_0000141 "CHECK: wikipedia says that cementocytes no longer produce cementum, but the phenoscape def is: Skeletogenic cell that produces cementum, is part of the odontogenic papilla, and is a transformation of a cementoblast cell (no change to existing def).") AnnotationAssertion(rdfs:label obo:CL_0000141 "cementocyte") SubClassOf(obo:CL_0000141 obo:CL_0000137) @@ -6023,6 +6334,7 @@ AnnotationAssertion(owl:deprecated obo:CL_0000144 "true"^^xsd:boolean) # Class: obo:CL_0000145 (professional antigen presenting cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "ISBN:0781735149") obo:IAO_0000115 obo:CL_0000145 "A cell capable of processing and presenting lipid and protein antigens to T cells in order to initiate an immune response.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000145 "ZFA:0009088") AnnotationAssertion(Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_0000145 "APC") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000145 cl:blood_and_immune_upper_slim) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000145 cl:cellxgene_subset) @@ -6030,10 +6342,12 @@ AnnotationAssertion(rdfs:comment obo:CL_0000145 "Note change of name; nearly all AnnotationAssertion(rdfs:label obo:CL_0000145 "professional antigen presenting cell") EquivalentClasses(obo:CL_0000145 ObjectIntersectionOf(obo:CL_0000738 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002504))) SubClassOf(obo:CL_0000145 obo:CL_0000738) +SubClassOf(obo:CL_0000145 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002504)) # Class: obo:CL_0000146 (simple columnar epithelial cell) AnnotationAssertion(obo:RO_0002175 obo:CL_0000146 obo:NCBITaxon_9606) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000146 "ZFA:0009089") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000146 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000146 "simple columnar epithelial cell") SubClassOf(obo:CL_0000146 obo:CL_0000075) @@ -6042,6 +6356,7 @@ SubClassOf(obo:CL_0000146 obo:CL_0000075) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0000147 "A pigment cell is a cell that contains pigment granules.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000147 "VHOG:0001678") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000147 "ZFA:0009090") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000147 "chromatocyte") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000147 "chromatophore") AnnotationAssertion(rdfs:label obo:CL_0000147 "pigment cell") @@ -6056,12 +6371,17 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000148 "CALOHA:TS-0613") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000148 "FMA:70545") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000148 "MESH:D008544") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000148 "VHOG:0001679") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000148 "ZFA:0009091") AnnotationAssertion(oboInOwl:hasNarrowSynonym obo:CL_0000148 "melanophore") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000148 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000148 cl:general_cell_types_upper_slim) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000148 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000148 "melanocyte") EquivalentClasses(obo:CL_0000148 ObjectIntersectionOf(obo:CL_0000147 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0042470) ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000541))) +SubClassOf(obo:CL_0000148 obo:BFO_0000002) +SubClassOf(obo:CL_0000148 obo:CL_0000147) +SubClassOf(obo:CL_0000148 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0042470)) +SubClassOf(obo:CL_0000148 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000541)) # Class: obo:CL_0000149 (visual pigment cell) @@ -6088,19 +6408,24 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000151 "FMA:86916") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000151 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000151 "secretory cell") EquivalentClasses(obo:CL_0000151 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032940))) +SubClassOf(obo:CL_0000151 obo:CL_0000000) +SubClassOf(obo:CL_0000151 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032940)) # Class: obo:CL_0000152 (exocrine cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ISBN:0198547684") obo:IAO_0000115 obo:CL_0000152 "A cell of an exocrine gland; i.e. a gland that discharges its secretion via a duct.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000152 "FMA:16014") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000152 "ZFA:0009092") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000152 cl:general_cell_types_upper_slim) AnnotationAssertion(rdfs:label obo:CL_0000152 "exocrine cell") EquivalentClasses(obo:CL_0000152 ObjectIntersectionOf(obo:CL_0000151 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002365))) SubClassOf(obo:CL_0000152 obo:CL_0000151) +SubClassOf(obo:CL_0000152 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002365)) # Class: obo:CL_0000153 (glycosaminoglycan secreting cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0000153 "A cell that secretes glycosaminoglycans.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000153 "ZFA:0009093") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000153 "GAG secreting cell") AnnotationAssertion(oboInOwl:hasNarrowSynonym obo:CL_0000153 "hyaluronic acid secreting cell") AnnotationAssertion(rdfs:label obo:CL_0000153 "glycosaminoglycan secreting cell") @@ -6109,8 +6434,11 @@ SubClassOf(obo:CL_0000153 obo:CL_0000447) # Class: obo:CL_0000154 (protein secreting cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0000154 "Any secretory cell that is capable of some protein secretion.") AnnotationAssertion(rdfs:label obo:CL_0000154 "protein secreting cell") EquivalentClasses(obo:CL_0000154 ObjectIntersectionOf(obo:CL_0000151 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0009306))) +SubClassOf(obo:CL_0000154 obo:CL_0000151) +SubClassOf(obo:CL_0000154 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0009306)) # Class: obo:CL_0000155 (peptic cell) @@ -6123,7 +6451,6 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000155 "zymogenic cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000155 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000155 "peptic cell") SubClassOf(obo:CL_0000155 obo:CL_0000154) -SubClassOf(obo:CL_0000155 obo:CL_0002178) SubClassOf(obo:CL_0000155 obo:CL_0002659) # Class: obo:CL_0000156 (obsolete antibody secreting cell) @@ -6139,6 +6466,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl AnnotationAssertion(rdfs:label obo:CL_0000157 "surfactant secreting cell") EquivalentClasses(obo:CL_0000157 ObjectIntersectionOf(obo:CL_0000151 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0043129))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000157 obo:CL_0000151) +SubClassOf(obo:CL_0000157 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0043129)) # Class: obo:CL_0000158 (club cell) @@ -6150,11 +6478,10 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000158 "Clara cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000158 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000158 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000158 "club cell") +SubClassOf(obo:CL_0000158 obo:CL_0000157) SubClassOf(obo:CL_0000158 obo:CL_0002202) SubClassOf(obo:CL_0000158 obo:CL_0011026) SubClassOf(obo:CL_0000158 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0005902)) -SubClassOf(obo:CL_0000158 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032940)) -SubClassOf(obo:CL_0000158 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0043129)) # Class: obo:CL_0000159 (seromucus secreting cell) @@ -6166,12 +6493,13 @@ SubClassOf(obo:CL_0000159 obo:CL_0000151) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D020397") obo:IAO_0000115 obo:CL_0000160 "A cell of the epithelial lining that produce and secrete mucins.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000160 "BTO:0001540") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000160 "FMA:13148") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000160 "ZFA:0009094") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000160 "http://en.wikipedia.org/wiki/Goblet_cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000160 "chalice cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000160 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000160 "goblet cell") SubClassOf(obo:CL_0000160 obo:CL_0000150) -SubClassOf(obo:CL_0000160 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0070254)) +SubClassOf(obo:CL_0000160 obo:CL_0000319) # Class: obo:CL_0000161 (obsolete acid secreting cell) @@ -6188,9 +6516,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000162 "FMA:62901") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000162 "oxyntic cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000162 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000162 "parietal cell") -SubClassOf(obo:CL_0000162 obo:CL_0000150) -SubClassOf(obo:CL_0000162 obo:CL_0000151) -SubClassOf(obo:CL_0000162 obo:CL_0002178) +SubClassOf(obo:CL_0000162 obo:CL_0002659) SubClassOf(obo:CL_0000162 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0046717)) # Class: obo:CL_0000163 (endocrine cell) @@ -6198,13 +6524,16 @@ SubClassOf(obo:CL_0000162 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0046717)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D055098") obo:IAO_0000115 obo:CL_0000163 "A cell of an endocrine gland, ductless glands that secrete substances which are released directly into the circulation and which influence metabolism and other body functions.") AnnotationAssertion(obo:RO_0002175 obo:CL_0000163 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000163 "FMA:83809") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000163 "ZFA:0009096") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000163 "endocrinocyte") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000163 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000163 cl:general_cell_types_upper_slim) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000163 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000163 "endocrine cell") EquivalentClasses(obo:CL_0000163 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:RO_0002215 ObjectIntersectionOf(obo:GO_0046879 ObjectSomeValuesFrom(obo:RO_0002339 obo:UBERON_0001009))))) +SubClassOf(obo:CL_0000163 obo:CL_0000151) SubClassOf(obo:CL_0000163 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000949)) +SubClassOf(obo:CL_0000163 ObjectSomeValuesFrom(obo:RO_0002215 ObjectIntersectionOf(obo:GO_0046879 ObjectSomeValuesFrom(obo:RO_0002339 obo:UBERON_0001009)))) # Class: obo:CL_0000164 (enteroendocrine cell) @@ -6212,6 +6541,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000164 "BTO:0003865") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000164 "FMA:62930") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000164 "MESH:D019858") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000164 "ZFA:0009097") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000164 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000164 "enteroendocrine cell") SubClassOf(obo:CL_0000164 obo:CL_0000150) @@ -6222,8 +6552,9 @@ SubClassOf(obo:CL_0000164 obo:CL_0000163) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D055099") obo:IAO_0000115 obo:CL_0000165 "A neuron that is capable of some hormone secretion in response to neuronal signals.") AnnotationAssertion(obo:RO_0002175 obo:CL_0000165 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000165 "BTO:0002691") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000165 "FBbt:00005130") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000165 "FBbt:00005130") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000165 "FMA:83810") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000165 "ZFA:0009098") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000165 "neurosecretory cell") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000165 "neurosecretory neuron") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000165 cl:cellxgene_subset) @@ -6234,7 +6565,6 @@ The modern definition of neurosecretion has evolved to include the release of an AnnotationAssertion(rdfs:label obo:CL_0000165 "neuroendocrine cell") EquivalentClasses(obo:CL_0000165 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0046879))) SubClassOf(obo:CL_0000165 obo:CL_0000163) -SubClassOf(obo:CL_0000165 obo:CL_0000393) SubClassOf(obo:CL_0000165 obo:CL_0000527) SubClassOf(obo:CL_0000165 obo:CL_0000710) @@ -6243,22 +6573,32 @@ SubClassOf(obo:CL_0000165 obo:CL_0000710) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D019439") obo:IAO_0000115 obo:CL_0000166 "A cell that stores epinephrine secretory vesicles. During times of stress, the nervous system signals the vesicles to secrete their hormonal content. Their name derives from their ability to stain a brownish color with chromic salts. Characteristically, they are located in the adrenal medulla and paraganglia of the sympathetic nervous system.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000166 "BTO:0000259") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000166 "FMA:69263") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000166 "ZFA:0009099") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000166 "phaeochromocyte") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000166 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000166 "chromaffin cell") +SubClassOf(obo:CL_0000166 obo:CL_0000029) SubClassOf(obo:CL_0000166 obo:CL_0000568) -SubClassOf(obo:CL_0000166 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000333)) # Class: obo:CL_0000167 (peptide hormone secreting cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0000167 "Any secretory cell that is capable of some peptide hormone secretion.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000167 "ZFA:0009100") AnnotationAssertion(rdfs:label obo:CL_0000167 "peptide hormone secreting cell") EquivalentClasses(obo:CL_0000167 ObjectIntersectionOf(obo:CL_0000151 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030072))) +SubClassOf(obo:CL_0000167 obo:CL_0000151) +SubClassOf(obo:CL_0000167 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030072)) # Class: obo:CL_0000168 (insulin secreting cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0000168 "Any secretory cell that is capable of some insulin secretion.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000168 "BTO:0000783") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000168 "ZFA:0009101") AnnotationAssertion(rdfs:label obo:CL_0000168 "insulin secreting cell") EquivalentClasses(obo:CL_0000168 ObjectIntersectionOf(obo:CL_0000151 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030073))) +SubClassOf(obo:CL_0000168 obo:CL_0000154) +SubClassOf(obo:CL_0000168 obo:CL_0000167) +SubClassOf(obo:CL_0000168 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030073)) # Class: obo:CL_0000169 (type B pancreatic cell) @@ -6269,6 +6609,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000169 "BTO:0000783") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000169 "EV:0200009") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000169 "FMA:70586") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000169 "MA:0002419") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000169 "ZFA:0009102") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000169 "ncithesaurus:Beta_Cell") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:70586") oboInOwl:hasExactSynonym obo:CL_0000169 "B-cell of pancreatic islet") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:70586") oboInOwl:hasExactSynonym obo:CL_0000169 "beta cell of pancreatic islet") @@ -6284,17 +6625,21 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000169 core:human_reference_atlas) AnnotationAssertion(rdfs:comment obo:CL_0000169 "Pancreatic beta cells are also reportedly CD284-positive. Upon activation, they upregulate their CD14 expression.") AnnotationAssertion(rdfs:label obo:CL_0000169 "type B pancreatic cell") EquivalentClasses(obo:CL_0000169 ObjectIntersectionOf(obo:CL_0000164 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000006) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030073))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000169 obo:CL_0000164) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000169 obo:CL_0000168) +SubClassOf(obo:CL_0000169 obo:CL_0008024) +SubClassOf(obo:CL_0000169 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000006)) SubClassOf(obo:CL_0000169 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002351)) # Class: obo:CL_0000170 (glucagon secreting cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0000170 "A cell that secretes glucagon.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000170 "FMA:84045") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000170 "ZFA:0009103") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000170 "glucagon-secreting cell") AnnotationAssertion(rdfs:label obo:CL_0000170 "glucagon secreting cell") EquivalentClasses(obo:CL_0000170 ObjectIntersectionOf(obo:CL_0000151 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0070091))) +SubClassOf(obo:CL_0000170 obo:CL_0000167) +SubClassOf(obo:CL_0000170 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0070091)) # Class: obo:CL_0000171 (pancreatic A cell) @@ -6303,6 +6648,7 @@ AnnotationAssertion(obo:RO_0002175 obo:CL_0000171 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000171 "BTO:0000990") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000171 "FMA:70585") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000171 "MESH:D050416") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000171 "ZFA:0009104") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000171 "alpha cell of islet of Langerhans") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000171 "pancreatic alpha cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000171 cl:cellxgene_subset) @@ -6310,14 +6656,18 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000171 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000171 "pancreatic A cell") EquivalentClasses(obo:CL_0000171 ObjectIntersectionOf(obo:CL_0002067 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001264))) SubClassOf(obo:CL_0000171 obo:CL_0002067) +SubClassOf(obo:CL_0000171 obo:CL_0008024) SubClassOf(obo:CL_0000171 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000006)) SubClassOf(obo:CL_0000171 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002351)) -SubClassOf(obo:CL_0000171 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0070091)) # Class: obo:CL_0000172 (somatostatin secreting cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0000172 "Any secretory cell that is capable of some somatostatin secretion.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000172 "ZFA:0009105") AnnotationAssertion(rdfs:label obo:CL_0000172 "somatostatin secreting cell") EquivalentClasses(obo:CL_0000172 ObjectIntersectionOf(obo:CL_0000151 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0070253))) +SubClassOf(obo:CL_0000172 obo:CL_0000167) +SubClassOf(obo:CL_0000172 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0070253)) # Class: obo:CL_0000173 (pancreatic D cell) @@ -6325,6 +6675,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:0517223651") Annotation(o AnnotationAssertion(obo:RO_0002175 obo:CL_0000173 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000173 "BTO:0000803") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000173 "FMA:70587") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000173 "ZFA:0005743") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000173 "D-cell of pancreatic islet") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000173 "delta cell of islet") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000173 "delta cell of pancreatic islet") @@ -6336,13 +6687,18 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000173 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000173 "pancreatic D cell") EquivalentClasses(obo:CL_0000173 ObjectIntersectionOf(obo:CL_0000502 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001264))) SubClassOf(obo:CL_0000173 obo:CL_0000502) +SubClassOf(obo:CL_0000173 obo:CL_0008024) SubClassOf(obo:CL_0000173 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000006)) SubClassOf(obo:CL_0000173 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002351)) # Class: obo:CL_0000174 (steroid hormone secreting cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0000174 "Any secretory cell that is capable of some steroid hormone secretion.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000174 "ZFA:0009106") AnnotationAssertion(rdfs:label obo:CL_0000174 "steroid hormone secreting cell") EquivalentClasses(obo:CL_0000174 ObjectIntersectionOf(obo:CL_0000151 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0035929))) +SubClassOf(obo:CL_0000174 obo:CL_0000151) +SubClassOf(obo:CL_0000174 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0035929)) # Class: obo:CL_0000175 (luteal cell) @@ -6354,20 +6710,26 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:16790079") oboInOwl:hasE AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000175 "lutein cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000175 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000175 "luteal cell") -SubClassOf(obo:CL_0000175 obo:CL_0000174) +SubClassOf(obo:CL_0000175 obo:CL_0000179) SubClassOf(obo:CL_0000175 obo:CL_0002132) SubClassOf(obo:CL_0000175 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002512)) -SubClassOf(obo:CL_0000175 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0042701)) # Class: obo:CL_0000176 (ecdysteroid secreting cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0000176 "Any secretory cell that is capable of some ecdysteroid secretion.") AnnotationAssertion(rdfs:label obo:CL_0000176 "ecdysteroid secreting cell") EquivalentClasses(obo:CL_0000176 ObjectIntersectionOf(obo:CL_0000151 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045457))) +SubClassOf(obo:CL_0000176 obo:CL_0000174) +SubClassOf(obo:CL_0000176 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045457)) # Class: obo:CL_0000177 (testosterone secreting cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0000177 "Any secretory cell that is capable of some testosterone secretion.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000177 "ZFA:0009107") AnnotationAssertion(rdfs:label obo:CL_0000177 "testosterone secreting cell") EquivalentClasses(obo:CL_0000177 ObjectIntersectionOf(obo:CL_0000151 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0035936))) +SubClassOf(obo:CL_0000177 obo:CL_0000151) +SubClassOf(obo:CL_0000177 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0035936)) # Class: obo:CL_0000178 (Leydig cell) @@ -6378,24 +6740,34 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000178 "CALOHA:TS-1150") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000178 "EMAPA:29655") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000178 "FMA:72297") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000178 "MESH:D007985") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000178 "ZFA:0009108") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000178 "interstitial cell of Leydig") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000178 cl:cellxgene_subset) AnnotationAssertion(rdfs:comment obo:CL_0000178 "Note that the Amphibian Anatomy Ontology (AA) has a class 'leydig cells' but this is unrelated") AnnotationAssertion(rdfs:label obo:CL_0000178 "Leydig cell") +SubClassOf(obo:CL_0000178 obo:BFO_0000002) SubClassOf(obo:CL_0000178 obo:CL_0000177) +SubClassOf(obo:CL_0000178 obo:CL_4030031) SubClassOf(obo:CL_0000178 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005212)) SubClassOf(obo:CL_0000178 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0009091)) # Class: obo:CL_0000179 (progesterone secreting cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0000179 "Any secretory cell that is capable of some progesterone secretion.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000179 "ZFA:0009109") AnnotationAssertion(rdfs:label obo:CL_0000179 "progesterone secreting cell") EquivalentClasses(obo:CL_0000179 ObjectIntersectionOf(obo:CL_0000151 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0042701))) +SubClassOf(obo:CL_0000179 obo:CL_0000174) +SubClassOf(obo:CL_0000179 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0042701)) # Class: obo:CL_0000180 (estradiol secreting cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "https://orcid.org/0000-0001-5208-3432") obo:IAO_0000115 obo:CL_0000180 "A steroid hormone secreting cell that secretes estradiol.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000180 "ZFA:0009110") AnnotationAssertion(rdfs:label obo:CL_0000180 "estradiol secreting cell") EquivalentClasses(obo:CL_0000180 ObjectIntersectionOf(obo:CL_0000151 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0035938))) +SubClassOf(obo:CL_0000180 obo:CL_0000174) +SubClassOf(obo:CL_0000180 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0035938)) # Class: obo:CL_0000181 (obsolete metabolising cell) @@ -6412,16 +6784,17 @@ AnnotationAssertion(obo:RO_0002175 obo:CL_0000182 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000182 "BTO:0000575") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000182 "CALOHA:TS-0454") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000182 "FMA:14515") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000182 "ZFA:0009111") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000182 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000182 core:human_reference_atlas) AnnotationAssertion(rdfs:comment obo:CL_0000182 "Hepatocytes are reportedly MHC Class I-positive and MHC Class II-positive.") AnnotationAssertion(rdfs:label obo:CL_0000182 "hepatocyte") +SubClassOf(obo:CL_0000182 obo:BFO_0000002) SubClassOf(obo:CL_0000182 obo:CL_0000066) SubClassOf(obo:CL_0000182 obo:CL_0000417) SubClassOf(obo:CL_0000182 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002107)) SubClassOf(obo:CL_0000182 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0005026)) SubClassOf(obo:CL_0000182 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0006699)) -SubClassOf(obo:CL_0000182 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0044237)) SubClassOf(obo:CL_0000182 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0098754)) # Class: obo:CL_0000183 (contractile cell) @@ -6443,13 +6816,13 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000185 "BTO:0002309") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000185 "CALOHA:TS-2379") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000185 "FMA:67799") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000185 "ZFA:0009113") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000185 "basket epithelial cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000185 "myoepitheliocyte") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000185 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000185 "myoepithelial cell") SubClassOf(obo:CL_0000185 obo:CL_0000075) SubClassOf(obo:CL_0000185 obo:CL_0000183) -SubClassOf(obo:CL_0000185 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000222)) # Class: obo:CL_0000186 (myofibroblast cell) @@ -6461,7 +6834,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000186 core:human_reference_atlas) AnnotationAssertion(rdfs:comment obo:CL_0000186 "Myofibroblasts are alpha-SMA-positive, CD34-negative, CD45-negative. They are reportedly capable of secreting IL-1beta, IL-6, and TNF-alpha.") AnnotationAssertion(rdfs:label obo:CL_0000186 "myofibroblast cell") SubClassOf(obo:CL_0000186 obo:CL_0000183) -SubClassOf(obo:CL_0000186 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002384)) +SubClassOf(obo:CL_0000186 obo:CL_0002320) # Class: obo:CL_0000187 (muscle cell) @@ -6469,14 +6842,16 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D032342") obo:IAO_000011 AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000187 "BTO:0000888") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000187 "BTO:0000902") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000187 "CALOHA:TS-2032") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000187 "FBbt:00005074") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000187 "FBbt:00005074") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000187 "FMA:67328") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000187 "WBbt:0003675") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000187 "ZFA:0009114") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000187 "muscle fiber") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000187 "myocyte") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000187 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000187 "muscle cell") AnnotationAssertion(foaf:depiction obo:CL_0000187 "https://www.swissbiopics.org/api/image/Muscle_cells.svg"^^xsd:anyURI) +SubClassOf(obo:CL_0000187 obo:BFO_0000002) SubClassOf(obo:CL_0000187 obo:CL_0000183) SubClassOf(obo:CL_0000187 obo:CL_0000393) SubClassOf(obo:CL_0000187 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000056)) @@ -6488,16 +6863,20 @@ AnnotationAssertion(obo:RO_0002175 obo:CL_0000188 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000188 "BTO:0004392") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000188 "CALOHA:TS-2158") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000188 "FMA:9727") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000188 "ZFA:0009115") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000188 "skeletal muscle cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000188 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000188 cl:general_cell_types_upper_slim) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000188 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000188 "cell of skeletal muscle") EquivalentClasses(obo:CL_0000188 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001134))) +SubClassOf(obo:CL_0000188 obo:CL_0000000) +SubClassOf(obo:CL_0000188 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001134)) # Class: obo:CL_0000189 (slow muscle cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0323052908") obo:IAO_0000115 obo:CL_0000189 "A muscle cell that develops tension more slowly than a fast-twitch fiber.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000189 "ZFA:0009116") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ISBN:0815316208") oboInOwl:hasRelatedSynonym obo:CL_0000189 "slow muscle fiber") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000189 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000189 "slow muscle cell") @@ -6507,6 +6886,7 @@ SubClassOf(obo:CL_0000189 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000857)) # Class: obo:CL_0000190 (fast muscle cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0323052908") obo:IAO_0000115 obo:CL_0000190 "A muscle cell that can develop high tension rapidly. It is usually innervated by a single alpha neuron.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000190 "ZFA:0009117") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000190 "glycolytic muscle fiber") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000190 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000190 "fast muscle cell") @@ -6527,6 +6907,7 @@ AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000192 "non-striated muscle AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000192 "BTO:0004576") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000192 "CALOHA:TS-2159") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000192 "FMA:14072") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000192 "ZFA:0009118") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:9315361") oboInOwl:hasExactSynonym obo:CL_0000192 "SMCs") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D032389") oboInOwl:hasExactSynonym obo:CL_0000192 "myocytes, smooth muscle") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000192 "smooth muscle fiber") @@ -6543,6 +6924,8 @@ SubClassOf(obo:CL_0000192 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000514)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D032383") obo:IAO_0000115 obo:CL_0000193 "A striated muscle cell of an arthropod heart that participates in heart contraction.") AnnotationAssertion(rdfs:label obo:CL_0000193 "cardiac muscle cell (sensu Arthopoda)") EquivalentClasses(obo:CL_0000193 ObjectIntersectionOf(obo:CL_0000746 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000465))) +SubClassOf(obo:CL_0000193 obo:CL_0000746) +SubClassOf(obo:CL_0000193 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000465)) # Class: obo:CL_0000194 (obsolete nodal cardiac cell) @@ -6558,12 +6941,9 @@ AnnotationAssertion(owl:deprecated obo:CL_0000195 "true"^^xsd:boolean) # Class: obo:CL_0000196 (insect flight muscle cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.2142/biophysics.7.21") obo:IAO_0000115 obo:CL_0000196 "A muscle cell that is involved in the mechanism of insect flight. This encompasses both, cells that power flight and cells that control flight.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000196 "FBbt:00003360") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000196 "FBbt:00003360") AnnotationAssertion(rdfs:label obo:CL_0000196 "insect flight muscle cell") -SubClassOf(obo:CL_0000196 obo:CL_0008004) -SubClassOf(obo:CL_0000196 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0030017)) -SubClassOf(obo:CL_0000196 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001908)) -SubClassOf(obo:CL_0000196 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0002478)) +SubClassOf(obo:CL_0000196 obo:CL_0008003) # Class: obo:CL_0000197 (sensory receptor cell) @@ -6572,10 +6952,14 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000197 "MESH:D011984") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000197 "receptor cell") AnnotationAssertion(rdfs:label obo:CL_0000197 "sensory receptor cell") EquivalentClasses(obo:CL_0000197 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001032) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050906))) +SubClassOf(obo:CL_0000197 obo:CL_0000000) +SubClassOf(obo:CL_0000197 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001032)) +SubClassOf(obo:CL_0000197 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050906)) # Class: obo:CL_0000198 (pain receptor cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D009619") obo:IAO_0000115 obo:CL_0000198 "The peripheral receptor for pain. Includes receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli. All mammalian nociceptors are free nerve endings.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000198 "ZFA:0009119") AnnotationAssertion(Annotation(rdfs:seeAlso "https://meshb.nlm.nih.gov/record/ui?ui=D009619"^^xsd:anyURI) oboInOwl:hasExactSynonym obo:CL_0000198 "nociceptor") AnnotationAssertion(Annotation(rdfs:seeAlso "https://www.thefreedictionary.com/nocireceptor"^^xsd:anyURI) oboInOwl:hasExactSynonym obo:CL_0000198 "nocireceptor") AnnotationAssertion(rdfs:comment obo:CL_0000198 "Editor note: request detection of stimulus involved in sensory perception of pain; add develops_from relationship") @@ -6585,14 +6969,20 @@ SubClassOf(obo:CL_0000198 obo:CL_0000006) # Class: obo:CL_0000199 (mechanoreceptor cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D008465") obo:IAO_0000115 obo:CL_0000199 "A cell specialized to transduce mechanical stimuli and relay that information centrally in the nervous system.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000199 "ZFA:0009120") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MP:0000972") oboInOwl:hasRelatedSynonym obo:CL_0000199 "mechanoreceptor") AnnotationAssertion(rdfs:label obo:CL_0000199 "mechanoreceptor cell") EquivalentClasses(obo:CL_0000199 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050974))) +SubClassOf(obo:CL_0000199 obo:CL_0000101) +SubClassOf(obo:CL_0000199 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050974)) # Class: obo:CL_0000200 (touch receptor cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0000200 "Any neuron that is capable of some detection of mechanical stimulus involved in sensory perception of touch.") AnnotationAssertion(rdfs:label obo:CL_0000200 "touch receptor cell") EquivalentClasses(obo:CL_0000200 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050976))) +SubClassOf(obo:CL_0000200 obo:CL_0000199) +SubClassOf(obo:CL_0000200 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050976)) # Class: obo:CL_0000201 (obo:CL_0000201) @@ -6603,6 +6993,7 @@ AnnotationAssertion(owl:deprecated obo:CL_0000201 "true"^^xsd:boolean) # Class: obo:CL_0000202 (auditory hair cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D006198") Annotation(oboInOwl:hasDbXref "WikipediaVersioned:Hair_cell&oldid=1045345915") obo:IAO_0000115 obo:CL_0000202 "A mechanoreceptor cell of the auditory or vestibular system that is sensitive to auditory stimuli. The accessory sensory structures are arranged so that appropriate stimuli cause movement of the hair-like projections (stereocilia and kinocilia) which relay the information centrally in the nervous system.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000202 "ZFA:0009121") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000202 "auditory receptor cell") AnnotationAssertion(rdfs:comment obo:CL_0000202 "In mammals these cells are located in the organ of Corti.") AnnotationAssertion(rdfs:label obo:CL_0000202 "auditory hair cell") @@ -6611,8 +7002,12 @@ SubClassOf(obo:CL_0000202 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050910)) # Class: obo:CL_0000203 (gravity sensitive cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0000203 "Any neuronal receptor cell that is capable of some detection of mechanical stimulus involved in sensory perception of gravity.") AnnotationAssertion(rdfs:label obo:CL_0000203 "gravity sensitive cell") EquivalentClasses(obo:CL_0000203 ObjectIntersectionOf(obo:CL_0000006 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0070999))) +SubClassOf(obo:CL_0000203 obo:CL_0000006) +SubClassOf(obo:CL_0000203 obo:CL_0000199) +SubClassOf(obo:CL_0000203 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0070999)) # Class: obo:CL_0000204 (acceleration receptive cell) @@ -6622,28 +7017,39 @@ SubClassOf(obo:CL_0000204 obo:CL_0000006) # Class: obo:CL_0000205 (thermoreceptor cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "MESH:D013823") Annotation(oboInOwl:hasDbXref "MP:0000971") obo:IAO_0000115 obo:CL_0000205 "A cellular receptor which mediates the sense of temperature. Thermoreceptor cells in vertebrates are mostly located under the skin. In mammals there are separate types of thermoreceptors for cold and for warmth and pain receptor cells which detect cold or heat extreme enough to cause pain.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000205 "ZFA:0009123") AnnotationAssertion(rdfs:label obo:CL_0000205 "thermoreceptor cell") EquivalentClasses(obo:CL_0000205 ObjectIntersectionOf(obo:CL_0000006 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050960))) +SubClassOf(obo:CL_0000205 obo:CL_0000006) +SubClassOf(obo:CL_0000205 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050960)) # Class: obo:CL_0000206 (chemoreceptor cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D002628") obo:IAO_0000115 obo:CL_0000206 "A cell specialized to detect chemical substances and relay that information centrally in the nervous system. Chemoreceptors may monitor external stimuli, as in taste and olfaction, or internal stimuli, such as the concentrations of oxygen and carbon dioxide in the blood.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000206 "ZFA:0009124") AnnotationAssertion(rdfs:label obo:CL_0000206 "chemoreceptor cell") EquivalentClasses(obo:CL_0000206 ObjectIntersectionOf(obo:CL_0000197 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050907))) +SubClassOf(obo:CL_0000206 obo:CL_0000197) +SubClassOf(obo:CL_0000206 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050907)) # Class: obo:CL_0000207 (olfactory receptor cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0000207 "Any neuron that is capable of some detection of chemical stimulus involved in sensory perception of smell.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000207 "BTO:0004185") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000207 "FMA:67860") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000207 "MESH:D018034") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000207 "Wikipedia:Olfactory_receptor_neuron") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000207 "ZFA:0009125") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000207 "Schultze's cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000207 "odorant receptor cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000207 "olfactory receptor neuron") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000207 "olfactory sensory neuron") AnnotationAssertion(rdfs:label obo:CL_0000207 "olfactory receptor cell") EquivalentClasses(obo:CL_0000207 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050911))) +SubClassOf(obo:CL_0000207 obo:CL_0000006) +SubClassOf(obo:CL_0000207 obo:CL_0000206) SubClassOf(obo:CL_0000207 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005725)) +SubClassOf(obo:CL_0000207 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050911)) # Class: obo:CL_0000208 (pH receptor cell) @@ -6654,28 +7060,35 @@ SubClassOf(obo:CL_0000208 obo:CL_0000206) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0618947256") obo:IAO_0000115 obo:CL_0000209 "A specialized cell involved in gustatory sensory perception.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000209 "FMA:67910") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000209 "ZFA:0009126") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000209 "taste bud cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000209 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000209 "taste receptor cell") EquivalentClasses(obo:CL_0000209 ObjectIntersectionOf(obo:CL_0000206 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050912))) SubClassOf(obo:CL_0000209 obo:CL_0000098) +SubClassOf(obo:CL_0000209 obo:CL_0000206) SubClassOf(obo:CL_0000209 obo:CL_0002076) +SubClassOf(obo:CL_0000209 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050912)) # Class: obo:CL_0000210 (photoreceptor cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D010786") obo:IAO_0000115 obo:CL_0000210 "A cell specialized to detect and transduce light.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000210 "BTO:0001060") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000210 "CALOHA:TS-0868") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000210 "FBbt:00004211") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000210 "FMA:86740") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000210 "ZFA:0009127") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000210 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000210 "photoreceptor cell") AnnotationAssertion(foaf:depiction obo:CL_0000210 "https://www.swissbiopics.org/api/image/Photoreceptor_cell.svg"^^xsd:anyURI) EquivalentClasses(obo:CL_0000210 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050962))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000210 obo:CL_0000006) +SubClassOf(obo:CL_0000210 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050962)) # Class: obo:CL_0000211 (electrically active cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FB:ma") obo:IAO_0000115 obo:CL_0000211 "A cell whose function is determined by the generation or the reception of an electric signal.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000211 "ZFA:0009128") AnnotationAssertion(rdfs:label obo:CL_0000211 "electrically active cell") SubClassOf(obo:CL_0000211 obo:CL_0000000) @@ -6683,6 +7096,7 @@ SubClassOf(obo:CL_0000211 obo:CL_0000000) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CL:CVS") obo:IAO_0000115 obo:CL_0000212 "A cell that takes up and metabolizes substances.") AnnotationAssertion(obo:RO_0002175 obo:CL_0000212 obo:NCBITaxon_9606) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000212 "ZFA:0009129") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000212 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000212 "absorptive cell") SubClassOf(obo:CL_0000212 obo:CL_0000000) @@ -6690,6 +7104,7 @@ SubClassOf(obo:CL_0000212 obo:CL_0000000) # Class: obo:CL_0000213 (lining cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "JB:jb") obo:IAO_0000115 obo:CL_0000213 "A cell within an epithelial cell sheet whose main function is to act as an internal or external covering for a tissue or an organism.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000213 "ZFA:0009130") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000213 "boundary cell") AnnotationAssertion(rdfs:label obo:CL_0000213 "lining cell") SubClassOf(obo:CL_0000213 obo:CL_0000215) @@ -6698,6 +7113,7 @@ SubClassOf(obo:CL_0000213 obo:CL_0000215) AnnotationAssertion(obo:IAO_0000115 obo:CL_0000214 "A cell located in the synovial joint.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000214 "CALOHA:TS-0995") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000214 "ZFA:0009131") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000214 "synoviocyte") AnnotationAssertion(rdfs:label obo:CL_0000214 "synovial cell") SubClassOf(obo:CL_0000214 obo:CL_0000213) @@ -6707,6 +7123,7 @@ SubClassOf(obo:CL_0000214 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000221 # Class: obo:CL_0000215 (barrier cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "JB:jb") obo:IAO_0000115 obo:CL_0000215 "A cell whose primary function is to prevent the transport of stuff across compartments.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000215 "ZFA:0009132") AnnotationAssertion(rdfs:label obo:CL_0000215 "barrier cell") SubClassOf(obo:CL_0000215 obo:CL_0000000) @@ -6717,16 +7134,17 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000216 "BTO:0001238") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000216 "CALOHA:TS-0922") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000216 "FMA:72298") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000216 "VHOG:0001348") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000216 "ZFA:0009133") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000216 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000216 "Sertoli cell") EquivalentClasses(obo:CL_0000216 ObjectIntersectionOf(obo:CL_0000630 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001343))) -SubClassOf(obo:CL_0000216 obo:CL_0000215) SubClassOf(obo:CL_0000216 obo:CL_0000511) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000216 obo:CL_0000630) SubClassOf(obo:CL_0000216 obo:CL_0002625) # Class: obo:CL_0000217 (insulating cell) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000217 "ZFA:0009134") AnnotationAssertion(rdfs:label obo:CL_0000217 "insulating cell") SubClassOf(obo:CL_0000217 obo:CL_0000215) @@ -6737,18 +7155,22 @@ AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000218 "Schwann cell") AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000218 "peripheral neuroglial cell") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000218 "CALOHA:TS-0898") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000218 "FMA:62121") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000218 "ZFA:0009135") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000218 "neurilemmal cell") AnnotationAssertion(rdfs:label obo:CL_0000218 "myelinating Schwann cell") SubClassOf(obo:CL_0000218 obo:CL_0000217) SubClassOf(obo:CL_0000218 obo:CL_0002573) -SubClassOf(obo:CL_0000218 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0043209)) +SubClassOf(obo:CL_0000218 obo:CL_4023154) SubClassOf(obo:CL_0000218 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002377)) # Class: obo:CL_0000219 (motile cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FB:ma") obo:IAO_0000115 obo:CL_0000219 "A cell that moves by its own activities.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000219 "ZFA:0009136") AnnotationAssertion(rdfs:label obo:CL_0000219 "motile cell") EquivalentClasses(obo:CL_0000219 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0048870))) +SubClassOf(obo:CL_0000219 obo:CL_0000000) +SubClassOf(obo:CL_0000219 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0048870)) # Class: obo:CL_0000220 (obsolete cell by lineage) @@ -6763,6 +7185,7 @@ AnnotationAssertion(owl:deprecated obo:CL_0000220 "true"^^xsd:boolean) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D004475") obo:IAO_0000115 obo:CL_0000221 "A cell of the outer of the three germ layers of the embryo.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000221 "FMA:72549") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000221 "ZFA:0009137") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000221 "ectoderm cell") AnnotationAssertion(rdfs:label obo:CL_0000221 "ectodermal cell") SubClassOf(obo:CL_0000221 obo:CL_0002321) @@ -6772,6 +7195,7 @@ SubClassOf(obo:CL_0000221 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000092 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D008648") obo:IAO_0000115 obo:CL_0000222 "A cell of the middle germ layer of the embryo.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000222 "FMA:72554") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000222 "ZFA:0009138") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000222 "mesoblast") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000222 "mesoderm cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000222 cl:cellxgene_subset) @@ -6783,6 +7207,7 @@ SubClassOf(obo:CL_0000222 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000092 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D004707") obo:IAO_0000115 obo:CL_0000223 "A cell of the inner of the three germ layers of the embryo.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000223 "FMA:72555") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000223 "ZFA:0009139") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000223 "endoderm cell") AnnotationAssertion(rdfs:label obo:CL_0000223 "endodermal cell") SubClassOf(obo:CL_0000223 obo:CL_0002321) @@ -6805,6 +7230,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000225 "FMA:68647") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000225 "non-nucleated cell") AnnotationAssertion(rdfs:label obo:CL_0000225 "anucleate cell") EquivalentClasses(obo:CL_0000225 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001405))) +SubClassOf(obo:CL_0000225 obo:CL_0000000) +SubClassOf(obo:CL_0000225 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001405)) DisjointClasses(obo:CL_0000225 obo:CL_0002242) # Class: obo:CL_0000226 (single nucleate cell) @@ -6812,11 +7239,16 @@ DisjointClasses(obo:CL_0000225 obo:CL_0002242) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FB:ma") Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0000226 "A cell with a single nucleus.") AnnotationAssertion(rdfs:label obo:CL_0000226 "single nucleate cell") EquivalentClasses(obo:CL_0000226 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001407))) +SubClassOf(obo:CL_0000226 obo:CL_0002242) +SubClassOf(obo:CL_0000226 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001407)) # Class: obo:CL_0000227 (binucleate cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0000227 "Any cell that has characteristic some binucleate.") AnnotationAssertion(rdfs:label obo:CL_0000227 "binucleate cell") EquivalentClasses(obo:CL_0000227 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001406))) +SubClassOf(obo:CL_0000227 obo:CL_0000228) +SubClassOf(obo:CL_0000227 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001406)) # Class: obo:CL_0000228 (multinucleate cell) @@ -6828,6 +7260,8 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000228 "syncytial cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000228 "syncytium") AnnotationAssertion(rdfs:label obo:CL_0000228 "multinucleate cell") EquivalentClasses(obo:CL_0000228 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001908))) +SubClassOf(obo:CL_0000228 obo:CL_0002242) +SubClassOf(obo:CL_0000228 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001908)) # Class: obo:CL_0000229 (obsolete lymphoblast) @@ -6864,7 +7298,12 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000232 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000232 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000232 "erythrocyte") EquivalentClasses(obo:CL_0000232 ObjectIntersectionOf(obo:CL_0000764 ObjectSomeValuesFrom(obo:CL_4030045 obo:GO_0005840) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001945) ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0002039) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0008015) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0015671))) +SubClassOf(obo:CL_0000232 obo:CL_0000081) +SubClassOf(obo:CL_0000232 obo:CL_0000329) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000232 obo:CL_0000764) +SubClassOf(obo:CL_0000232 ObjectSomeValuesFrom(obo:CL_4030045 obo:GO_0005840)) +SubClassOf(obo:CL_0000232 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001945)) +SubClassOf(obo:CL_0000232 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0002039)) SubClassOf(obo:CL_0000232 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000558)) # Class: obo:CL_0000233 (platelet) @@ -6883,11 +7322,11 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000233 core:human_reference_atlas) AnnotationAssertion(rdfs:comment obo:CL_0000233 "Platelets are reportedly CCR1-positive, CCR2-negative, CCR3-positive, CCR4-positive, CCR5-negative, CCR6-negative, CCR7-negative, CCR8-negative, CCR9-negative, CCR10-negative, CD16-positive, CD23-positive, CD32-positive, CD40-positive, CD41-positive CD42-positive, CD61-positive, CD62P-positive, CD64-positive, CD89-positive, CD102-positive, CD147-positive (activated platelets), CD154-positive (activated platelets), CD162-positive, CD209, CD282-positive, CD284-positive, CD289-positive, CD181-negative, CD182-negative, CD183-negative, CD184-positive, CLEC2-positive, GPVI-positive, JAMC-positive, PAR1-positive, PAR2-negative, PAR3-positive, PAR4-positive, TSP1-positive, and TXA2R-positive. Platelets can reportedly produce CCL2, CCL3, CCL5, CCL7, CCL17, CD40L, CXCL1, CXCL4, CXCL4L1, CXCL5, CXCL7, CXCL8, CXCL12, EGF, factor V, factor VII, factor XI, factor XIII, bFGF, histamine, IGF-1, IL-1beta, PAI-1, PDGF, plasminogen, protein S, serotonin, TGF-beta, TFPI, VEGF, and vWF.") AnnotationAssertion(rdfs:label obo:CL_0000233 "platelet") SubClassOf(obo:CL_0000233 obo:CL_0000081) +SubClassOf(obo:CL_0000233 obo:CL_0000225) +SubClassOf(obo:CL_0000233 obo:CL_0000458) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000233 obo:CL_0000763) -SubClassOf(obo:CL_0000233 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001405)) SubClassOf(obo:CL_0000233 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001874)) SubClassOf(obo:CL_0000233 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000556)) -SubClassOf(obo:CL_0000233 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001820)) SubClassOf(obo:CL_0000233 ObjectSomeValuesFrom(obo:RO_0002216 obo:GO_0007596)) # Class: obo:CL_0000234 (phagocyte) @@ -6896,12 +7335,14 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000234 "BTO:0001044") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000234 "FMA:83806") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000234 "MESH:D010586") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000234 "ZFA:0009140") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000234 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000234 "phagocyte") EquivalentClasses(obo:CL_0000234 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0006909))) SubClassOf(obo:CL_0000234 obo:CL_0000219) SubClassOf(obo:CL_0000234 obo:CL_0000325) SubClassOf(obo:CL_0000234 obo:CL_0000473) +SubClassOf(obo:CL_0000234 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0006909)) # Class: obo:CL_0000235 (macrophage) @@ -6912,6 +7353,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000235 "CALOHA:TS-0587") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000235 "FMA:63261") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000235 "FMA:83585") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000235 "MESH:D008264") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000235 "ZFA:0009141") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000235 "histiocyte") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000235 cl:blood_and_immune_upper_slim) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000235 cl:cellxgene_subset) @@ -6921,8 +7363,10 @@ AnnotationAssertion(rdfs:comment obo:CL_0000235 "Morphology: Diameter 30_M-80 _M AnnotationAssertion(rdfs:label obo:CL_0000235 "macrophage") EquivalentClasses(obo:CL_0000235 ObjectIntersectionOf(obo:CL_0000766 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002504) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0006909) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0031268))) SubClassOf(obo:CL_0000235 obo:CL_0000113) +SubClassOf(obo:CL_0000235 obo:CL_0000145) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000235 obo:CL_0000766) SubClassOf(obo:CL_0000235 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000576)) +SubClassOf(obo:CL_0000235 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0031268)) # Class: obo:CL_0000236 (B cell) @@ -6933,6 +7377,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000236 "CALOHA:TS-0068") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000236 "FMA:62869") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000236 "MESH:D001402") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000236 "VHOG:0001480") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000236 "ZFA:0009142") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000236 "B lymphocyte") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000236 "B-cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000236 "B-lymphocyte") @@ -6943,13 +7388,14 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000236 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000236 "B cell") EquivalentClasses(obo:CL_0000236 ObjectIntersectionOf(obo:CL_0000945 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0019724))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000236 obo:CL_0000945) -SubClassOf(obo:CL_0000236 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000826)) +SubClassOf(obo:CL_0000236 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0019724)) # Class: obo:CL_0000237 (keratinizing barrier epithelial cell) AnnotationAssertion(rdfs:label obo:CL_0000237 "keratinizing barrier epithelial cell") SubClassOf(obo:CL_0000237 obo:CL_0000240) SubClassOf(obo:CL_0000237 obo:CL_0000311) +SubClassOf(obo:CL_0000237 obo:CL_0002077) SubClassOf(obo:CL_0000237 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000114)) # Class: obo:CL_0000238 (non keratinizing barrier epithelial cell) @@ -6959,13 +7405,15 @@ SubClassOf(obo:CL_0000238 obo:CL_0000240) # Class: obo:CL_0000239 (brush border epithelial cell) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000239 "ZFA:0009143") AnnotationAssertion(rdfs:label obo:CL_0000239 "brush border epithelial cell") +SubClassOf(obo:CL_0000239 obo:CL_0000067) SubClassOf(obo:CL_0000239 obo:CL_0000075) -SubClassOf(obo:CL_0000239 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0005929)) # Class: obo:CL_0000240 (stratified squamous epithelial cell) AnnotationAssertion(obo:RO_0002175 obo:CL_0000240 obo:NCBITaxon_9606) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000240 "ZFA:0009144") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000240 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000240 "stratified squamous epithelial cell") SubClassOf(obo:CL_0000240 obo:CL_0000076) @@ -6974,6 +7422,7 @@ SubClassOf(obo:CL_0000240 obo:CL_0000079) # Class: obo:CL_0000241 (stratified cuboidal epithelial cell) AnnotationAssertion(obo:RO_0002175 obo:CL_0000241 obo:NCBITaxon_9606) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000241 "ZFA:0009145") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000241 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000241 "stratified cuboidal epithelial cell") SubClassOf(obo:CL_0000241 obo:CL_0000075) @@ -6984,12 +7433,14 @@ SubClassOf(obo:CL_0000241 obo:CL_0000079) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D018862") obo:IAO_0000115 obo:CL_0000242 "A modified epidermal cell located in the stratum basale. They are found mostly in areas where sensory perception is acute. Merkel cells are closely associated with an expanded terminal bulb of an afferent myelinated nerve fiber.") AnnotationAssertion(obo:RO_0002175 obo:CL_0000242 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000242 "FMA:70548") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000242 "ZFA:0009146") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000242 "Merkel's cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000242 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000242 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000242 "Merkel cell") SubClassOf(obo:CL_0000242 obo:CL_0000123) SubClassOf(Annotation(oboInOwl:hasDbXref "PMID:19782676") obo:CL_0000242 obo:CL_0000312) +SubClassOf(obo:CL_0000242 obo:CL_0000710) SubClassOf(obo:CL_0000242 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002025)) # Class: obo:CL_0000243 (obsolete glial cell (sensu Vertebrata)) @@ -7005,6 +7456,7 @@ AnnotationAssertion(owl:deprecated obo:CL_0000243 "true"^^xsd:boolean) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0721662544") obo:IAO_0000115 obo:CL_0000244 "A cell characteristically found lining hollow organs that are subject to great mechanical change due to contraction and distention; originally thought to represent a transition between stratified squamous and columnar epithelium.") AnnotationAssertion(obo:RO_0002175 obo:CL_0000244 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000244 "FMA:66778") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000244 "ZFA:0009148") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000244 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000244 "transitional epithelial cell") SubClassOf(obo:CL_0000244 obo:CL_0000066) @@ -7018,6 +7470,7 @@ AnnotationAssertion(owl:deprecated obo:CL_0000245 "true"^^xsd:boolean) # Class: obo:CL_0000246 (Mauthner neuron) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000246 "ZFA:0009149") AnnotationAssertion(rdfs:label obo:CL_0000246 "Mauthner neuron") SubClassOf(obo:CL_0000246 obo:CL_0000099) @@ -7027,11 +7480,12 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "VHOG:0001484") obo:IAO_000011 AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000247 "AAO:0010316") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000247 "EFO:0003711") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000247 "VHOG:0001484") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000247 "ZFA:0009150") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000247 "ZFA:0009150") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "VHOG:0001484") oboInOwl:hasExactSynonym obo:CL_0000247 "Rohon Beard cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000247 "Rohon-Beard cell") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "VHOG:0001484") oboInOwl:hasRelatedSynonym obo:CL_0000247 "RB neuron") AnnotationAssertion(rdfs:label obo:CL_0000247 "Rohon-Beard neuron") +SubClassOf(obo:CL_0000247 obo:CL_0000006) SubClassOf(obo:CL_0000247 obo:CL_0000531) SubClassOf(obo:CL_0000247 obo:CL_4023168) @@ -7046,6 +7500,7 @@ AnnotationAssertion(owl:deprecated obo:CL_0000248 "true"^^xsd:boolean) # Class: obo:CL_0000249 (hatching gland cell) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000249 "ZFA:0009151") AnnotationAssertion(rdfs:label obo:CL_0000249 "hatching gland cell") SubClassOf(obo:CL_0000249 obo:CL_0000151) @@ -7058,6 +7513,7 @@ AnnotationAssertion(owl:deprecated obo:CL_0000250 "true"^^xsd:boolean) # Class: obo:CL_0000251 (extramedullary cell) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000251 "ZFA:0009152") AnnotationAssertion(rdfs:label obo:CL_0000251 "extramedullary cell") SubClassOf(obo:CL_0000251 obo:CL_0000101) @@ -7070,6 +7526,7 @@ AnnotationAssertion(owl:deprecated obo:CL_0000252 "true"^^xsd:boolean) # Class: obo:CL_0000253 (eurydendroid cell) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000253 "ZFA:0009153") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000253 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000253 "eurydendroid cell") SubClassOf(obo:CL_0000253 obo:CL_0000527) @@ -7084,10 +7541,13 @@ AnnotationAssertion(owl:deprecated obo:CL_0000254 "true"^^xsd:boolean) # Class: obo:CL_0000255 (eukaryotic cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0000255 "Any cell that only exists in Eukaryota.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000255 "MESH:D005057") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000255 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000255 "eukaryotic cell") EquivalentClasses(obo:CL_0000255 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_2759))) +SubClassOf(obo:CL_0000255 obo:CL_0000000) +SubClassOf(obo:CL_0000255 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_2759)) DisjointClasses(obo:CL_0000255 obo:CL_0000520) # Class: obo:CL_0000256 (uric acid accumulating cell) @@ -7097,9 +7557,11 @@ SubClassOf(obo:CL_0000256 obo:CL_0000325) # Class: obo:CL_0000257 (Eumycetozoan cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0000257 "Any cell that only exists in Eumycetozoa.") AnnotationAssertion(rdfs:label obo:CL_0000257 "Eumycetozoan cell") EquivalentClasses(obo:CL_0000257 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_142796))) SubClassOf(obo:CL_0000257 obo:CL_0000255) +SubClassOf(obo:CL_0000257 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_142796)) # Class: obo:CL_0000258 (obsolete fiber tracheid) @@ -7294,13 +7756,16 @@ SubClassOf(obo:CL_0000286 obo:CL_0000521) # Class: obo:CL_0000287 (eye photoreceptor cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0000287 "Any photoreceptor cell that is part of some eye.") AnnotationAssertion(obo:RO_0002175 obo:CL_0000287 obo:NCBITaxon_9606) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000287 "ZFA:0009154") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000287 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000287 cl:eye_upper_slim) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000287 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000287 "eye photoreceptor cell") EquivalentClasses(obo:CL_0000287 ObjectIntersectionOf(obo:CL_0000210 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000970))) SubClassOf(obo:CL_0000287 obo:CL_0000210) +SubClassOf(obo:CL_0000287 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000970)) # Class: obo:CL_0000288 (obsolete synergid) @@ -7339,6 +7804,7 @@ AnnotationAssertion(owl:deprecated obo:CL_0000292 "true"^^xsd:boolean) # Class: obo:CL_0000293 (structural cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "TAIR:sr") obo:IAO_0000115 obo:CL_0000293 "A cell whose primary function is to provide structural support, to provide strength and physical integrity to the organism.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000293 "ZFA:0005745") AnnotationAssertion(rdfs:label obo:CL_0000293 "structural cell") SubClassOf(obo:CL_0000293 obo:CL_0000000) @@ -7351,10 +7817,13 @@ AnnotationAssertion(owl:deprecated obo:CL_0000294 "true"^^xsd:boolean) # Class: obo:CL_0000295 (somatotropin secreting cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "SANBI:mhl") obo:IAO_0000115 obo:CL_0000295 "A peptide hormone secreting cell that produces growth hormone, somatotropin.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000295 "ZFA:0009155") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000295 "growth hormone secreting cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000295 "somatotrophin secreting cell") AnnotationAssertion(rdfs:label obo:CL_0000295 "somatotropin secreting cell") EquivalentClasses(obo:CL_0000295 ObjectIntersectionOf(obo:CL_0000151 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030252))) +SubClassOf(obo:CL_0000295 obo:CL_0000167) +SubClassOf(obo:CL_0000295 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030252)) # Class: obo:CL_0000296 (obsolete vegetative cell) @@ -7388,18 +7857,21 @@ AnnotationAssertion(owl:deprecated obo:CL_0000299 "true"^^xsd:boolean) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0721662544") obo:IAO_0000115 obo:CL_0000300 "A mature sexual reproductive cell having a single set of unpaired chromosomes.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000300 "CALOHA:TS-0395") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000300 "FBbt:00005412") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000300 "FBbt:00005412") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000300 "FMA:18649") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000300 "ZFA:0009156") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000300 "haploid nucleated cell") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000300 "haploid germ cell") AnnotationAssertion(rdfs:label obo:CL_0000300 "gamete") EquivalentClasses(obo:CL_0000300 ObjectIntersectionOf(obo:CL_0000586 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001375) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0009566))) +SubClassOf(obo:CL_0000300 obo:CL_0000413) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000300 obo:CL_0000586) +SubClassOf(obo:CL_0000300 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0009566)) # Class: obo:CL_0000301 (pole cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1017/CBO9780511818202.015") obo:IAO_0000115 obo:CL_0000301 "A primordial germ cell of insects. Such cells form at the posterior pole of the early embryo.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000301 "FBbt:00000092") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000301 "FBbt:00000092") AnnotationAssertion(rdfs:label obo:CL_0000301 "pole cell") SubClassOf(obo:CL_0000301 obo:CL_0000670) @@ -7447,6 +7919,7 @@ AnnotationAssertion(rdfs:comment obo:CL_0000307 "This class is for the vertebrat AnnotationAssertion(rdfs:label obo:CL_0000307 "tracheal epithelial cell") EquivalentClasses(obo:CL_0000307 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003126))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000307 obo:CL_0002202) +SubClassOf(obo:CL_0000307 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003126)) SubClassOf(obo:CL_0000307 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000377)) # Class: obo:CL_0000308 (metal ion accumulating cell) @@ -7467,6 +7940,7 @@ SubClassOf(obo:CL_0000310 obo:CL_0000308) # Class: obo:CL_0000311 (keratin accumulating cell) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000311 "ZFA:0009157") AnnotationAssertion(rdfs:label obo:CL_0000311 "keratin accumulating cell") SubClassOf(obo:CL_0000311 obo:CL_0000325) @@ -7477,6 +7951,7 @@ AnnotationAssertion(obo:RO_0002175 obo:CL_0000312 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000312 "BTO:0000667") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000312 "CALOHA:TS-0500") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000312 "FMA:62879") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000312 "ZFA:0009158") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000312 "keratinized cell of epidermis") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000312 "malpighian cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000312 cl:cellxgene_subset) @@ -7486,6 +7961,7 @@ AnnotationAssertion(rdfs:label obo:CL_0000312 "keratinocyte") EquivalentClasses(obo:CL_0000312 ObjectIntersectionOf(obo:CL_0000237 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001003))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000312 obo:CL_0000237) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000312 obo:CL_0000362) +SubClassOf(obo:CL_0000312 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001003)) SubClassOf(obo:CL_0000312 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002775)) SubClassOf(obo:CL_0000312 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002776)) SubClassOf(obo:CL_0000312 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0090023)) @@ -7510,7 +7986,7 @@ SubClassOf(obo:CL_0000314 obo:CL_0000151) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D013666") obo:IAO_0000115 obo:CL_0000315 "A cell secreting tears, the fluid secreted by the lacrimal glands. This fluid moistens the conjunctiva and cornea.") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000315 "tears secreting cell") AnnotationAssertion(rdfs:label obo:CL_0000315 "tear secreting cell") -SubClassOf(obo:CL_0000315 obo:CL_0000151) +SubClassOf(obo:CL_0000315 obo:CL_0000152) SubClassOf(obo:CL_0000315 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001817)) # Class: obo:CL_0000316 (obsolete ray initial) @@ -7528,18 +8004,20 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000317 "sebocyte") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000317 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000317 "sebum secreting cell") EquivalentClasses(obo:CL_0000317 ObjectIntersectionOf(obo:CL_0000151 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001821))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000317 obo:CL_0000151) +SubClassOf(obo:CL_0000317 obo:CL_0000152) +SubClassOf(obo:CL_0000317 obo:CL_2000021) # Class: obo:CL_0000318 (sweat secreting cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D013542") obo:IAO_0000115 obo:CL_0000318 "A cell secreting sweat, the fluid excreted by the sweat glands of mammals. It consists of water containing sodium chloride, phosphate, urea, ammonia, and other waste products.") AnnotationAssertion(rdfs:label obo:CL_0000318 "sweat secreting cell") SubClassOf(obo:CL_0000318 obo:CL_0000150) -SubClassOf(obo:CL_0000318 obo:CL_0000151) # Class: obo:CL_0000319 (mucus secreting cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0000319 "Any secretory cell that is capable of some mucus secretion.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000319 "BTO:0003689") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000319 "ZFA:0009159") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000319 "mucous cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000319 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000319 "mucus secreting cell") @@ -7574,7 +8052,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000322 "alveolar epithelial AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000322 "pneumonocyte") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000322 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000322 "pneumocyte") -SubClassOf(obo:CL_0000322 obo:CL_0000066) +SubClassOf(obo:CL_0000322 obo:CL_0010003) SubClassOf(obo:CL_0000322 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004821)) # Class: obo:CL_0000323 (lysozyme secreting cell) @@ -7585,6 +8063,7 @@ SubClassOf(obo:CL_0000323 obo:CL_0000154) # Class: obo:CL_0000324 (metanephric mesenchyme stem cell) AnnotationAssertion(rdfs:label obo:CL_0000324 "metanephric mesenchyme stem cell") +SubClassOf(obo:CL_0000324 obo:BFO_0000002) SubClassOf(obo:CL_0000324 obo:CL_0000134) SubClassOf(obo:CL_0000324 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000222)) @@ -7602,6 +8081,7 @@ SubClassOf(obo:CL_0000326 obo:CL_0000325) # Class: obo:CL_0000327 (extracellular matrix secreting cell) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000327 "ZFA:0009162") AnnotationAssertion(rdfs:label obo:CL_0000327 "extracellular matrix secreting cell") SubClassOf(obo:CL_0000327 obo:CL_0000499) @@ -7615,8 +8095,12 @@ AnnotationAssertion(owl:deprecated obo:CL_0000328 "true"^^xsd:boolean) # Class: obo:CL_0000329 (oxygen accumulating cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0000329 "Any cell that is capable of some oxygen transport.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000329 "ZFA:0009164") AnnotationAssertion(rdfs:label obo:CL_0000329 "oxygen accumulating cell") EquivalentClasses(obo:CL_0000329 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0015671))) +SubClassOf(obo:CL_0000329 obo:CL_0000000) +SubClassOf(obo:CL_0000329 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0015671)) # Class: obo:CL_0000330 (obsolete collenchymal cell) @@ -7644,10 +8128,11 @@ AnnotationAssertion(owl:deprecated obo:CL_0000332 "true"^^xsd:boolean) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1016/j.stem.2015.02.017") obo:IAO_0000115 obo:CL_0000333 "A cell derived from the specialized ectoderm flanking each side of the embryonic neural plate, which after the closure of the neural tube, forms masses of cells that migrate out from the dorsal aspect of the neural tube to spread throughout the body.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000333 "FMA:86667") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000333 "ZFA:0007086") AnnotationAssertion(rdfs:label obo:CL_0000333 "migratory neural crest cell") -SubClassOf(obo:CL_0000333 obo:CL_0000000) SubClassOf(obo:CL_0000333 obo:CL_0000219) SubClassOf(obo:CL_0000333 obo:CL_0011012) +SubClassOf(obo:CL_0000333 obo:CL_0011026) SubClassOf(obo:CL_0000333 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0007004)) # Class: obo:CL_0000334 (vegetative cell (sensu Fungi)) @@ -7661,6 +8146,7 @@ SubClassOf(obo:CL_0000334 obo:CL_0000521) # Class: obo:CL_0000335 (mesenchyme condensation cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:5025404") obo:IAO_0000115 obo:CL_0000335 "A mesenchymal cell in embryonic development found in a contracting mass and that gives rise to osteoprogenitors.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000335 "ZFA:0009166") AnnotationAssertion(rdfs:label obo:CL_0000335 "mesenchyme condensation cell") SubClassOf(obo:CL_0000335 obo:CL_0008019) @@ -7668,12 +8154,13 @@ SubClassOf(obo:CL_0000335 obo:CL_0008019) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "http://www.britannica.com/EBchecked/topic/6405/adrenal-gland") obo:IAO_0000115 obo:CL_0000336 "A cell found within the adrenal medulla that secrete biogenic amine hormones upon stimulation.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000336 "FMA:69262") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000336 "ZFA:0009167") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:69262") oboInOwl:hasExactSynonym obo:CL_0000336 "medullary chromaffin cell of adrenal gland") AnnotationAssertion(rdfs:label obo:CL_0000336 "adrenal medulla chromaffin cell") EquivalentClasses(obo:CL_0000336 ObjectIntersectionOf(obo:CL_0000166 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001236))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000336 obo:CL_0000150) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000336 obo:CL_0000166) SubClassOf(obo:CL_0000336 obo:CL_0000457) +SubClassOf(obo:CL_0000336 obo:CL_1000426) +SubClassOf(obo:CL_0000336 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001236)) SubClassOf(obo:CL_0000336 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000011)) # Class: obo:CL_0000337 (obo:CL_0000337) @@ -7686,25 +8173,27 @@ AnnotationAssertion(owl:deprecated obo:CL_0000337 "true"^^xsd:boolean) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:1295739") obo:IAO_0000115 obo:CL_0000338 "A neural precursor of the central nervous system.") AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000338 "neuroblast") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000338 "FBbt:00005146") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000338 "FBbt:00005146") AnnotationAssertion(rdfs:label obo:CL_0000338 "neuroblast (sensu Nematoda and Protostomia)") SubClassOf(obo:CL_0000338 obo:CL_0000047) +SubClassOf(obo:CL_0000338 obo:CL_0000255) SubClassOf(obo:CL_0000338 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_33317)) # Class: obo:CL_0000339 (glioblast (sensu Vertebrata)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0618947256") obo:IAO_0000115 obo:CL_0000339 "An early neural cell developing from the early ependymal cell of the neural tube.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000339 "FMA:70564") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000339 "ZFA:0009169") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000339 "spongioblast") AnnotationAssertion(rdfs:label obo:CL_0000339 "glioblast (sensu Vertebrata)") SubClassOf(obo:CL_0000339 obo:CL_0000030) SubClassOf(obo:CL_0000339 obo:CL_0000123) -SubClassOf(obo:CL_0000339 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_7742)) +SubClassOf(obo:CL_0000339 obo:CL_0011026) # Class: obo:CL_0000340 (glioblast (sensu Nematoda and Protostomia)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1002/glia.21162") obo:IAO_0000115 obo:CL_0000340 "A precursor of the central nervous system that gives rise to glial cells only.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000340 "FBbt:00005145") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000340 "FBbt:00005145") AnnotationAssertion(rdfs:label obo:CL_0000340 "glioblast (sensu Nematoda and Protostomia)") SubClassOf(obo:CL_0000340 obo:CL_0000030) SubClassOf(obo:CL_0000340 obo:CL_0000130) @@ -7718,18 +8207,22 @@ SubClassOf(obo:CL_0000341 obo:CL_0000147) # Class: obo:CL_0000342 (pigment cell (sensu Vertebrata)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0721662544") obo:IAO_0000115 obo:CL_0000342 "Any animal cell containing pigment granules.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000342 "ZFA:0009170") AnnotationAssertion(rdfs:label obo:CL_0000342 "pigment cell (sensu Vertebrata)") SubClassOf(obo:CL_0000342 obo:CL_0000147) +SubClassOf(obo:CL_0000342 obo:CL_0000255) SubClassOf(obo:CL_0000342 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_7742)) # Class: obo:CL_0000343 (visual pigment cell (sensu Vertebrata)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0000343 "A pigment cell that is capable of detecting light stimulus that is involved in visual perception.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000343 "FMA:63846") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000343 "ZFA:0009171") AnnotationAssertion(rdfs:label obo:CL_0000343 "visual pigment cell (sensu Vertebrata)") EquivalentClasses(obo:CL_0000343 ObjectIntersectionOf(obo:CL_0000342 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050908))) SubClassOf(obo:CL_0000343 obo:CL_0000149) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000343 obo:CL_0000342) +SubClassOf(obo:CL_0000343 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050908)) # Class: obo:CL_0000344 (obsolete non-visual cell (sensu Vertebrata)) @@ -7739,8 +8232,10 @@ AnnotationAssertion(owl:deprecated obo:CL_0000344 "true"^^xsd:boolean) # Class: obo:CL_0000345 (dental papilla cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0721662544") obo:IAO_0000115 obo:CL_0000345 "A mesenchymal cell that is part of a small mass of condensed mesenchyme in the enamel organ; it differentiates into the dentin and dental pulp.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000345 "ZFA:0009173") AnnotationAssertion(rdfs:comment obo:CL_0000345 "Merge with odontoblast?") AnnotationAssertion(rdfs:label obo:CL_0000345 "dental papilla cell") +SubClassOf(obo:CL_0000345 obo:BFO_0000002) SubClassOf(obo:CL_0000345 obo:CL_0008019) SubClassOf(obo:CL_0000345 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001763)) SubClassOf(obo:CL_0000345 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000008)) @@ -7752,34 +8247,51 @@ AnnotationAssertion(rdfs:comment obo:CL_0000346 "Are these really all stem cells AnnotationAssertion(rdfs:label obo:CL_0000346 "hair follicle dermal papilla cell") EquivalentClasses(obo:CL_0000346 ObjectIntersectionOf(obo:CL_0000134 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000412))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000346 obo:CL_0000134) +SubClassOf(obo:CL_0000346 obo:CL_0011026) +SubClassOf(obo:CL_0000346 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000412)) SubClassOf(obo:CL_0000346 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000333)) # Class: obo:CL_0000347 (scleral cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") obo:IAO_0000115 obo:CL_0000347 "A cell of the sclera of the eye.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000347 "ZFA:0009174") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000347 cl:eye_upper_slim) AnnotationAssertion(rdfs:label obo:CL_0000347 "scleral cell") EquivalentClasses(obo:CL_0000347 ObjectIntersectionOf(obo:CL_0000293 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001773))) +SubClassOf(obo:CL_0000347 obo:BFO_0000002) +SubClassOf(obo:CL_0000347 obo:CL_0000293) +SubClassOf(obo:CL_0000347 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001773)) SubClassOf(obo:CL_0000347 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000008)) # Class: obo:CL_0000348 (choroidal cell of the eye) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") obo:IAO_0000115 obo:CL_0000348 "A structural cell that is part of optic choroid.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000348 "ZFA:0009175") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000348 cl:eye_upper_slim) AnnotationAssertion(rdfs:label obo:CL_0000348 "choroidal cell of the eye") EquivalentClasses(obo:CL_0000348 ObjectIntersectionOf(obo:CL_0000293 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001776))) +SubClassOf(obo:CL_0000348 obo:BFO_0000002) +SubClassOf(obo:CL_0000348 obo:CL_0000293) +SubClassOf(obo:CL_0000348 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001776)) SubClassOf(obo:CL_0000348 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000008)) # Class: obo:CL_0000349 (extraembryonic cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0000349 "Any cell that is part of some extraembryonic structure.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000349 "ZFA:0009176") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000349 cl:general_cell_types_upper_slim) AnnotationAssertion(rdfs:label obo:CL_0000349 "extraembryonic cell") EquivalentClasses(obo:CL_0000349 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000478))) +SubClassOf(obo:CL_0000349 obo:CL_0000000) +SubClassOf(obo:CL_0000349 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000478)) # Class: obo:CL_0000350 (amnioserosal cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0000350 "Any extraembryonic cell that is part of some amnioserosa.") AnnotationAssertion(rdfs:label obo:CL_0000350 "amnioserosal cell") EquivalentClasses(obo:CL_0000350 ObjectIntersectionOf(obo:CL_0000349 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0010302))) +SubClassOf(obo:CL_0000350 obo:CL_0000349) +SubClassOf(obo:CL_0000350 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0010302)) # Class: obo:CL_0000351 (trophoblast cell) @@ -7801,12 +8313,14 @@ SubClassOf(obo:CL_0000352 obo:CL_0000052) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D001756") obo:IAO_0000115 obo:CL_0000353 "An undifferentiated cell produced by early cleavages of the fertilized egg (zygote).") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000353 "BTO:0001473") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000353 "FMA:72551") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000353 "ZFA:0009177") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000353 "blastomere") AnnotationAssertion(rdfs:label obo:CL_0000353 "blastoderm cell") SubClassOf(obo:CL_0000353 obo:CL_0000007) # Class: obo:CL_0000354 (blastemal cell) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000354 "ZFA:0009178") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000354 "ncithesaurus:Blastemal_Cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000354 "blastema cell") AnnotationAssertion(rdfs:label obo:CL_0000354 "blastemal cell") @@ -7816,10 +8330,12 @@ SubClassOf(obo:CL_0000354 obo:CL_0000048) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:18282570") obo:IAO_0000115 obo:CL_0000355 "A multifate stem cell found in skeletal muscle than can differentiate into many different cell types, including muscle. Distinct cell type from satellite cell.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000355 "FMA:86767") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000355 "ZFA:0009179") AnnotationAssertion(rdfs:comment obo:CL_0000355 "Multi-potency demonstrated ex vivo. At the time of writing, it is unclear whether the endogenous population differentiates into multiple cell types in vivo.") AnnotationAssertion(rdfs:label obo:CL_0000355 "multi-potent skeletal muscle stem cell") EquivalentClasses(obo:CL_0000355 ObjectIntersectionOf(obo:CL_0000048 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001134))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000355 obo:CL_0000048) +SubClassOf(obo:CL_0000355 obo:CL_0000188) # Class: obo:CL_0000356 (hair matrix stem cell) @@ -7828,6 +8344,7 @@ SubClassOf(obo:CL_0000356 obo:CL_0000035) # Class: obo:CL_0000357 (stratified epithelial stem cell) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000357 "ZFA:0009180") AnnotationAssertion(rdfs:label obo:CL_0000357 "stratified epithelial stem cell") SubClassOf(obo:CL_0000357 obo:CL_0000036) @@ -7837,11 +8354,13 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:cjm") obo:IAO_0000115 obo AnnotationAssertion(rdfs:label obo:CL_0000358 "sphincter associated smooth muscle cell") EquivalentClasses(obo:CL_0000358 ObjectIntersectionOf(obo:CL_0000192 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004590))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000358 obo:CL_0000192) +SubClassOf(obo:CL_0000358 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004590)) # Class: obo:CL_0000359 (vascular associated smooth muscle cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:dsd") Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0000359 "A smooth muscle cell associated with the vasculature.") AnnotationAssertion(obo:RO_0002175 obo:CL_0000359 obo:NCBITaxon_9606) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000359 "ZFA:0009181") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000359 "VSMC") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000359 "vascular smooth muscle cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000359 cl:cellxgene_subset) @@ -7850,6 +8369,7 @@ AnnotationAssertion(rdfs:label obo:CL_0000359 "vascular associated smooth muscle EquivalentClasses(obo:CL_0000359 ObjectIntersectionOf(obo:CL_0000192 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002049))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000359 obo:CL_0000192) SubClassOf(obo:CL_0000359 obo:CL_4033054) +SubClassOf(obo:CL_0000359 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002049)) # Class: obo:CL_0000360 (morula cell) @@ -7861,6 +8381,7 @@ SubClassOf(obo:CL_0000360 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000008 # Class: obo:CL_0000361 (gastrula cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D005775") obo:IAO_0000115 obo:CL_0000361 "A cell of the embryo in the early stage following the blastula, characterized by morphogenetic cell movements, cell differentiation, and the formation of the three germ layers.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000361 "ZFA:0009182") AnnotationAssertion(rdfs:label obo:CL_0000361 "gastrula cell") SubClassOf(obo:CL_0000361 obo:CL_0000007) SubClassOf(obo:CL_0000361 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004734)) @@ -7872,12 +8393,14 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000362 "BTO:0001470") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000362 "CALOHA:TS-0283") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000362 "FMA:62411") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000362 "MESH:D000078404") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000362 "ZFA:0009183") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:62411") oboInOwl:hasExactSynonym obo:CL_0000362 "cell of epidermis") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:62411") oboInOwl:hasNarrowSynonym obo:CL_0000362 "epithelial cell of skin") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000362 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000362 "epidermal cell") EquivalentClasses(obo:CL_0000362 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0007376))) SubClassOf(obo:CL_0000362 obo:CL_0002159) +SubClassOf(obo:CL_0000362 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0007376)) # Class: obo:CL_0000363 (obsolete axial cell) @@ -7902,7 +8425,9 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000365 "FMA:72395") AnnotationAssertion(rdfs:label obo:CL_0000365 "animal zygote") EquivalentClasses(obo:CL_0000365 ObjectIntersectionOf(obo:CL_0010017 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_33208))) SubClassOf(obo:CL_0000365 obo:CL_0000007) +SubClassOf(obo:CL_0000365 obo:CL_0000255) SubClassOf(obo:CL_0000365 obo:CL_0010017) +SubClassOf(obo:CL_0000365 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_33208)) # Class: obo:CL_0000366 (obsolete sperm cell (sensu Viridiplantae)) @@ -7953,15 +8478,16 @@ SubClassOf(obo:CL_0000371 obo:CL_0000578) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ISBN:978-0801481253") obo:IAO_0000115 obo:CL_0000372 "An epidermal cell that is part of a cell cluster organ of the insect integument (such as a sensillum) and that secretes a cuticular specialization that forms a socket around the base of a cuticular specialization produced by a trichogen cell.") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ISBN:978-0801481253") oboInOwl:hasBroadSynonym obo:CL_0000372 "socket cell") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000372 "FBbt:00005171") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000372 "FBbt:00005171") AnnotationAssertion(rdfs:label obo:CL_0000372 "tormogen cell") SubClassOf(obo:CL_0000372 obo:CL_0000463) # Class: obo:CL_0000373 (histoblast) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1016/j.cub.2022.01.045") obo:IAO_0000115 obo:CL_0000373 "A progenitor cell found in the larval epidermis of insects and that gives rise to the adult abdominal epidermis.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000373 "FBbt:00001789") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000373 "FBbt:00001789") AnnotationAssertion(rdfs:label obo:CL_0000373 "histoblast") +SubClassOf(obo:CL_0000373 obo:CL_0000255) SubClassOf(obo:CL_0000373 obo:CL_0011026) SubClassOf(obo:CL_0000373 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_50557)) @@ -7970,7 +8496,7 @@ SubClassOf(obo:CL_0000373 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_5055 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ISBN:978-0801481253") obo:IAO_0000115 obo:CL_0000374 "An epidermal cell that is part of a cell cluster organ of the insect integument (such as a sensillum) and that secretes a cuticular specialization, often in the form of a hair, bristle, peg or scale. The base of this specialization is often surrounded by a socket produced by a closely associated tormogen cell.") AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000374 "hair cell") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000374 "BTO:0004744") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000374 "FBbt:00005169") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000374 "FBbt:00005169") AnnotationAssertion(rdfs:label obo:CL_0000374 "trichogen cell") SubClassOf(obo:CL_0000374 obo:CL_0000463) @@ -7999,13 +8525,14 @@ SubClassOf(obo:CL_0000378 obo:CL_0000630) # Class: obo:CL_0000379 (sensory processing neuron) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000379 "ZFA:0009185") AnnotationAssertion(rdfs:label obo:CL_0000379 "sensory processing neuron") SubClassOf(obo:CL_0000379 obo:CL_0000540) # Class: obo:CL_0000380 (thecogen cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "Fbbt:00005173") obo:IAO_0000115 obo:CL_0000380 "The support cell that makes the thecogen dendritic cap - a cuticle-like matrix around the tip of the eo-dendrite and which encloses the soma of the eo-neuron.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000380 "FBbt:00005173") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000380 "FBbt:00005173") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000380 "fly sheath cell") AnnotationAssertion(rdfs:label obo:CL_0000380 "thecogen cell") SubClassOf(obo:CL_0000380 obo:CL_0000378) @@ -8021,7 +8548,7 @@ AnnotationAssertion(owl:deprecated obo:CL_0000381 "true"^^xsd:boolean) # Class: obo:CL_0000382 (scolopale cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1016/B978-012369493-5.50012-2") Annotation(oboInOwl:hasDbXref "doi:10.1017/CBO9780511818202.024") obo:IAO_0000115 obo:CL_0000382 "A cell that is part of a scolopidium and surrounds the dendrite of a scolopidial neuron.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000382 "FBbt:00005219") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000382 "FBbt:00005219") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ISBN:978-087969828-7") oboInOwl:hasExactSynonym obo:CL_0000382 "scolopidial sheath cell") AnnotationAssertion(rdfs:label obo:CL_0000382 "scolopale cell") SubClassOf(obo:CL_0000382 obo:CL_0000378) @@ -8029,12 +8556,15 @@ SubClassOf(obo:CL_0000382 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000103 # Class: obo:CL_0000383 (nephrogenic mesenchyme stem cell) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000383 "ZFA:0009187") AnnotationAssertion(rdfs:label obo:CL_0000383 "nephrogenic mesenchyme stem cell") SubClassOf(obo:CL_0000383 obo:CL_0000134) +SubClassOf(obo:CL_0000383 obo:CL_0011026) SubClassOf(obo:CL_0000383 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000134)) # Class: obo:CL_0000384 (ligament cell) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000384 "ZFA:0009188") AnnotationAssertion(rdfs:label obo:CL_0000384 "ligament cell") SubClassOf(obo:CL_0000384 obo:CL_0000630) @@ -8042,7 +8572,7 @@ SubClassOf(obo:CL_0000384 obo:CL_0000630) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1016/B978-012369493-5.50008-0") obo:IAO_0000115 obo:CL_0000385 "A precursor of mature hemocytes.") AnnotationAssertion(obo:RO_0002161 obo:CL_0000385 obo:NCBITaxon_33511) -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000385 "FBbt:00005062") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000385 "FBbt:00005062") AnnotationAssertion(rdfs:label obo:CL_0000385 "prohemocyte (sensu Nematoda and Protostomia)") SubClassOf(obo:CL_0000385 obo:CL_0008001) @@ -8054,8 +8584,10 @@ SubClassOf(obo:CL_0000386 obo:CL_0000630) # Class: obo:CL_0000387 (hemocyte (sensu Arthropoda)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1016/B978-012369493-5.50008-0") obo:IAO_0000115 obo:CL_0000387 "A blood cell of the circulatory system of arthropods.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000387 "FBbt:00005063") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000387 "FBbt:00005063") AnnotationAssertion(rdfs:label obo:CL_0000387 "hemocyte (sensu Arthropoda)") +SubClassOf(obo:CL_0000387 obo:BFO_0000002) +SubClassOf(obo:CL_0000387 obo:CL_0000255) SubClassOf(obo:CL_0000387 obo:CL_0000390) SubClassOf(obo:CL_0000387 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_6656)) SubClassOf(obo:CL_0000387 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000385)) @@ -8063,6 +8595,7 @@ SubClassOf(obo:CL_0000387 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000385)) # Class: obo:CL_0000388 (tendon cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:NV") Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:957445") obo:IAO_0000115 obo:CL_0000388 "An elongated fibrocyte that is part of a tendon. The cytoplasm is stretched between the collagen fibres of the tendon. They have a central cell nucleus with a prominent nucleolus. Tendon cells have a well-developed rough endoplasmic reticulum and they are responsible for synthesis and turnover of tendon fibres and ground substance.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000388 "ZFA:0009189") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000388 "muscle attachment cell") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000388 "tenocyte") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000388 cl:cellxgene_subset) @@ -8070,6 +8603,7 @@ AnnotationAssertion(rdfs:label obo:CL_0000388 "tendon cell") EquivalentClasses(obo:CL_0000388 ObjectIntersectionOf(obo:CL_0000135 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000043))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000388 obo:CL_0000135) SubClassOf(obo:CL_0000388 obo:CL_0000386) +SubClassOf(obo:CL_0000388 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000043)) # Class: obo:CL_0000389 (socket cell (sensu Nematoda)) @@ -8101,13 +8635,14 @@ SubClassOf(obo:CL_0000392 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000395)) # Class: obo:CL_0000393 (electrically responsive cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FB:ma") obo:IAO_0000115 obo:CL_0000393 "A cell whose function is determined by its response to an electric signal.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000393 "ZFA:0009190") AnnotationAssertion(rdfs:label obo:CL_0000393 "electrically responsive cell") SubClassOf(obo:CL_0000393 obo:CL_0000211) # Class: obo:CL_0000394 (plasmatocyte) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "https://doi.org/10.1016/B978-012369493-5.50008-0") obo:IAO_0000115 obo:CL_0000394 "A phagocytic hemocyte, responsible for the engulfment of small particles, microbes, and apoptotic tissue debris. It may also secretes antimicrobial peptides and contribute to the production and secretion of proteins of the hemolymph.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000394 "FBbt:00001685") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000394 "FBbt:00001685") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000394 "macrophage") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000394 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000394 "plasmatocyte") @@ -8117,29 +8652,30 @@ SubClassOf(obo:CL_0000394 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0035010)) # Class: obo:CL_0000395 (procrystal cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1016/B978-012369493-5.50008-0") obo:IAO_0000115 obo:CL_0000395 "A precursor of mature crystal cells.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000395 "FBbt:00001689") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000395 "FBbt:00001689") AnnotationAssertion(rdfs:label obo:CL_0000395 "procrystal cell") SubClassOf(obo:CL_0000395 obo:CL_0000385) # Class: obo:CL_0000396 (lamellocyte) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1016/B978-012369493-5.50008-0") obo:IAO_0000115 obo:CL_0000396 "A hemocyte found in immuno-stimulated larvae.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000396 "FBbt:00001687") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000396 "FBbt:00001687") AnnotationAssertion(rdfs:label obo:CL_0000396 "lamellocyte") SubClassOf(obo:CL_0000396 obo:CL_0000387) # Class: obo:CL_0000397 (ganglion interneuron) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0000397 "Any interneuron that has its soma located in some ganglion.") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000397 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000397 "ganglion interneuron") EquivalentClasses(obo:CL_0000397 ObjectIntersectionOf(obo:CL_0000099 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000045))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000397 obo:CL_0000099) +SubClassOf(obo:CL_0000397 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000045)) # Class: obo:CL_0000398 (obsolete polygonal cell) AnnotationAssertion(obo:IAO_0000233 obo:CL_0000398 ) AnnotationAssertion(obo:IAO_0100001 obo:CL_0000398 obo:CL_0000385) -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000398 "FBbt:00001691") AnnotationAssertion(rdfs:comment obo:CL_0000398 "Obsoleted as this is actually the same thing as prohemocytes.") AnnotationAssertion(rdfs:label obo:CL_0000398 "obsolete polygonal cell") AnnotationAssertion(owl:deprecated obo:CL_0000398 "true"^^xsd:boolean) @@ -8169,10 +8705,13 @@ AnnotationAssertion(owl:deprecated obo:CL_0000401 "true"^^xsd:boolean) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1016/B978-0-12-817424-1.00001-X") obo:IAO_0000115 obo:CL_0000402 "An interneuron that has its cell body in a central nervous system.") AnnotationAssertion(obo:RO_0002175 obo:CL_0000402 obo:NCBITaxon_9606) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000402 "ZFA:0009191") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000402 core:human_reference_atlas) AnnotationAssertion(rdfs:comment obo:CL_0000402 "Interneurons are commonly described as being only found in the central nervous system. However, in CL we define 'interneuron' more broadly as any neuron that is neither a motor neuron nor a sensory neuron, regardless of its location, so we need this term to refer strictly to interneurons of the central nervous system.") AnnotationAssertion(rdfs:label obo:CL_0000402 "CNS interneuron") EquivalentClasses(obo:CL_0000402 ObjectIntersectionOf(obo:CL_0000099 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001017))) +SubClassOf(obo:CL_0000402 obo:CL_0000099) +SubClassOf(obo:CL_0000402 obo:CL_2000029) # Class: obo:CL_0000403 (obo:CL_0000403) @@ -8183,6 +8722,7 @@ AnnotationAssertion(owl:deprecated obo:CL_0000403 "true"^^xsd:boolean) # Class: obo:CL_0000404 (electrically signaling cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FB:ma") obo:IAO_0000115 obo:CL_0000404 "A cell that initiates an electrical signal and passes that signal to another cell.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000404 "ZFA:0009193") AnnotationAssertion(rdfs:label obo:CL_0000404 "electrically signaling cell") SubClassOf(obo:CL_0000404 obo:CL_0000211) @@ -8195,19 +8735,21 @@ AnnotationAssertion(owl:deprecated obo:CL_0000405 "true"^^xsd:boolean) # Class: obo:CL_0000406 (CNS short range interneuron) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000406 "ZFA:0009194") AnnotationAssertion(rdfs:label obo:CL_0000406 "CNS short range interneuron") SubClassOf(obo:CL_0000406 obo:CL_0000402) # Class: obo:CL_0000407 (scolopidial ligament cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1016/B978-0-12-408088-1.00002-6") Annotation(oboInOwl:hasDbXref "doi:10.1023/a:1018564904170") obo:IAO_0000115 obo:CL_0000407 "A cell that anchors the cell body of a scolopidial neuron to the integument.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000407 "FBbt:00005221") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000407 "FBbt:00005221") AnnotationAssertion(rdfs:label obo:CL_0000407 "scolopidial ligament cell") SubClassOf(obo:CL_0000407 obo:CL_0000378) SubClassOf(obo:CL_0000407 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001038)) # Class: obo:CL_0000408 (male gamete) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0000408 "Any male germ cell that has characteristic some haploid and is capable of some fertilization.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000408 "BTO:0001277") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000408 "CALOHA:TS-0949") AnnotationAssertion(rdfs:label obo:CL_0000408 "male gamete") @@ -8224,6 +8766,7 @@ AnnotationAssertion(owl:deprecated obo:CL_0000409 "true"^^xsd:boolean) # Class: obo:CL_0000410 (CNS long range interneuron) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000410 "ZFA:0009195") AnnotationAssertion(rdfs:label obo:CL_0000410 "CNS long range interneuron") SubClassOf(obo:CL_0000410 obo:CL_0000402) @@ -8232,6 +8775,7 @@ SubClassOf(obo:CL_0000410 obo:CL_0000402) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "http://www.wormatlas.org/hermaphrodite/hypodermis/mainframe.htm") obo:IAO_0000115 obo:CL_0000411 "An epithelial cell of the hypodermis of Caenorhabditis.") AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000411 "roundworm hypodermal cell") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000411 "WBbt:0007846") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000411 "ZFA:0009196") AnnotationAssertion(rdfs:comment obo:CL_0000411 "This term was originally added to CL for parity with the Worm anatomy ontology, which is dedicated to C elegans. It is not clear if it makes sense to try and generalize the concept and include in CL, and this term may be obsoleted in future. Note there is no similarity to the hypodermis in vertebrates.") AnnotationAssertion(rdfs:label obo:CL_0000411 "Caenorhabditis hypodermal cell") SubClassOf(obo:CL_0000411 obo:CL_0000076) @@ -8243,12 +8787,16 @@ SubClassOf(obo:CL_0000411 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6237 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FB:ma") Annotation(oboInOwl:hasDbXref "PMID:32646579") Annotation(oboInOwl:hasDbXref "https://bio.libretexts.org/Bookshelves/Introductory_and_General_Biology/Biology_(Kimball)/07%3A_Cell_Division/7.04%3A_Polyploidy"^^xsd:anyURI) obo:IAO_0000115 obo:CL_0000412 "A cell that contains more than two haploid sets of chromosomes.") AnnotationAssertion(rdfs:label obo:CL_0000412 "polyploid cell") EquivalentClasses(obo:CL_0000412 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001377))) +SubClassOf(obo:CL_0000412 obo:CL_0000000) +SubClassOf(obo:CL_0000412 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001377)) # Class: obo:CL_0000413 (haploid cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FB:ma") Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0000413 "A cell whose nucleus contains a single haploid genome.") AnnotationAssertion(rdfs:label obo:CL_0000413 "haploid cell") EquivalentClasses(obo:CL_0000413 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001375))) +SubClassOf(obo:CL_0000413 obo:CL_0000000) +SubClassOf(obo:CL_0000413 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001375)) # Class: obo:CL_0000414 (obsolete cell by ploidy) @@ -8347,6 +8895,7 @@ SubClassOf(obo:CL_0000427 obo:CL_0002320) # Class: obo:CL_0000428 (yolk cell) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000428 "ZFA:0000084") AnnotationAssertion(rdfs:label obo:CL_0000428 "yolk cell") SubClassOf(obo:CL_0000428 obo:CL_0000325) SubClassOf(obo:CL_0000428 obo:CL_0000349) @@ -8354,26 +8903,31 @@ SubClassOf(obo:CL_0000428 obo:CL_0000349) # Class: obo:CL_0000429 (imaginal disc cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1007/s00412-016-0595-4") obo:IAO_0000115 obo:CL_0000429 "A columnar epithelial cell that is part of an insect imaginal disc.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000429 "FBbt:00007108") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000429 "FBbt:00007108") AnnotationAssertion(rdfs:comment obo:CL_0000429 "This term does not encompass all the cell types that may be found in an epithelial disc (such as the peripodial or adepithelial cells), only the cells that form the disc epithelium proper.") AnnotationAssertion(rdfs:label obo:CL_0000429 "imaginal disc cell") SubClassOf(obo:CL_0000429 obo:CL_0000146) +SubClassOf(obo:CL_0000429 obo:CL_0000255) SubClassOf(obo:CL_0000429 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000939)) SubClassOf(obo:CL_0000429 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_50557)) # Class: obo:CL_0000430 (xanthophore cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "SANBI:mhl") obo:IAO_0000115 obo:CL_0000430 "A pigment cell derived from the neural crest. Contains cartenoid pigments in structures called pterinosomes or xanthosomes. This gives an appearance ranging from a golden yellow to orange and red.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000430 "ZFA:0009198") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000430 "xanthophore") AnnotationAssertion(rdfs:label obo:CL_0000430 "xanthophore cell") +SubClassOf(obo:CL_0000430 obo:BFO_0000002) SubClassOf(obo:CL_0000430 obo:CL_0000147) SubClassOf(obo:CL_0000430 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0005002)) # Class: obo:CL_0000431 (iridophore) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "SANBI:mhl") obo:IAO_0000115 obo:CL_0000431 "A pigment cell derived from the neural crest. The cell contains flat light-reflecting platelets, probably of guanine, in stacks called reflecting platelets or iridisomes. The color-generating components produce a silver, gold, or iridescent color.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000431 "ZFA:0009199") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000431 "guanophore") AnnotationAssertion(rdfs:label obo:CL_0000431 "iridophore") +SubClassOf(obo:CL_0000431 obo:BFO_0000002) SubClassOf(obo:CL_0000431 obo:CL_0000147) SubClassOf(obo:CL_0000431 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0005001)) @@ -8382,6 +8936,7 @@ SubClassOf(obo:CL_0000431 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0005001)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0517223651") Annotation(oboInOwl:hasDbXref "http://en.wikipedia.org/wiki/Reticular_cell") obo:IAO_0000115 obo:CL_0000432 "A fibroblast that synthesizes collagen and uses it to produce reticular fibers, thus providing structural support. Reticular cells are found in many organs, including the spleen, lymph nodes and kidneys. Subtypes of reticular cells include epithelial, mesenchymal, and fibroblastic reticular cells. Fibroblastic reticular cells are involved in directing B cells and T cells to specific regions within a tissue, whereas epithelial and mesenchymal reticular cells are associated with certain areas of the brain.") AnnotationAssertion(obo:RO_0002175 obo:CL_0000432 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000432 "FMA:62877") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000432 "ZFA:0009200") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000432 "reticulum cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000432 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000432 core:human_reference_atlas) @@ -8406,6 +8961,7 @@ SubClassOf(obo:CL_0000434 obo:CL_0000150) # Class: obo:CL_0000435 (alkali secreting cell) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000435 "ZFA:0009201") AnnotationAssertion(rdfs:label obo:CL_0000435 "alkali secreting cell") SubClassOf(obo:CL_0000435 obo:CL_0000151) @@ -8420,6 +8976,7 @@ SubClassOf(obo:CL_0000436 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000099 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0517223651") Annotation(oboInOwl:hasDbXref "http://en.wikipedia.org/wiki/Gonadotroph") obo:IAO_0000115 obo:CL_0000437 "A rounded cell that is usually situated next to sinusoids; secretes follicular stimulating hormone (FSH) and luteinizing hormone (LH).") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000437 "BTO:0002482") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000437 "FMA:83100") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000437 "ZFA:0009202") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000437 "delta basophil") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000437 "follicle stimulating hormone secreting cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000437 "gonadotrope") @@ -8434,31 +8991,42 @@ SubClassOf(obo:CL_0000437 obo:CL_0000639) # Class: obo:CL_0000438 (luteinizing hormone secreting cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0000438 "A peptide hormone secreting cell pituitary that produces luteinizing hormone.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000438 "ZFA:0009203") AnnotationAssertion(rdfs:label obo:CL_0000438 "luteinizing hormone secreting cell") EquivalentClasses(obo:CL_0000438 ObjectIntersectionOf(obo:CL_0000151 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032275))) +SubClassOf(obo:CL_0000438 obo:CL_0000151) +SubClassOf(obo:CL_0000438 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032275)) # Class: obo:CL_0000439 (prolactin secreting cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "SANBI:mhl") obo:IAO_0000115 obo:CL_0000439 "A peptide hormone cell that secretes prolactin.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000439 "ZFA:0009204") AnnotationAssertion(rdfs:label obo:CL_0000439 "prolactin secreting cell") EquivalentClasses(obo:CL_0000439 ObjectIntersectionOf(obo:CL_0000151 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0070459))) +SubClassOf(obo:CL_0000439 obo:CL_0000154) +SubClassOf(obo:CL_0000439 obo:CL_0000167) +SubClassOf(obo:CL_0000439 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0070459)) # Class: obo:CL_0000440 (melanocyte stimulating hormone secreting cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "SANBI:mhl") obo:IAO_0000115 obo:CL_0000440 "A cell of the intermediate pituitary that produces melanocyte stimulating hormone.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000440 "BTO:0002277") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000440 "ZFA:0009205") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000440 "melanotrope") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000440 "melanotroph") AnnotationAssertion(rdfs:label obo:CL_0000440 "melanocyte stimulating hormone secreting cell") EquivalentClasses(obo:CL_0000440 ObjectIntersectionOf(obo:CL_0000151 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0036160))) +SubClassOf(obo:CL_0000440 obo:CL_0000167) +SubClassOf(obo:CL_0000440 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0036160)) # Class: obo:CL_0000441 (follicle stem cell (sensu Arthropoda)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1016/B978-012369493-5.50005-5") Annotation(oboInOwl:hasDbXref "doi:10.1038/s41467-020-19361-0") Annotation(oboInOwl:hasDbXref "doi:10.1242/dev.121.11.3797") obo:IAO_0000115 obo:CL_0000441 "A stem cell that gives rise to the follicle cells that surround the oocyte in female arthropods.") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1016/j.devcel.2005.08.012") oboInOwl:hasBroadSynonym obo:CL_0000441 "somatic stem cell") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000441 "FBbt:00004903") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000441 "FBbt:00004903") AnnotationAssertion(rdfs:label obo:CL_0000441 "follicle stem cell (sensu Arthropoda)") SubClassOf(obo:CL_0000441 obo:CL_0000036) +SubClassOf(obo:CL_0000441 obo:CL_0000255) SubClassOf(Annotation(obo:IAO_0000233 "https://github.com/obophenotype/cell-ontology/issues/1943") obo:CL_0000441 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_6656)) # Class: obo:CL_0000442 (follicular dendritic cell) @@ -8476,8 +9044,12 @@ SubClassOf(obo:CL_0000442 obo:CL_0000473) # Class: obo:CL_0000443 (calcitonin secreting cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0000443 "Any secretory cell that is capable of some calcitonin secretion.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000443 "ZFA:0009206") AnnotationAssertion(rdfs:label obo:CL_0000443 "calcitonin secreting cell") EquivalentClasses(obo:CL_0000443 ObjectIntersectionOf(obo:CL_0000151 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0036161))) +SubClassOf(obo:CL_0000443 obo:CL_0000167) +SubClassOf(obo:CL_0000443 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0036161)) # Class: obo:CL_0000444 (obliquely striated muscle cell) @@ -8485,6 +9057,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:DOS") Annotation(oboInOwl AnnotationAssertion(rdfs:comment obo:CL_0000444 "Examples include the somatic muscles of nemotodes and cephalopods.") AnnotationAssertion(rdfs:label obo:CL_0000444 "obliquely striated muscle cell") EquivalentClasses(obo:CL_0000444 ObjectIntersectionOf(obo:CL_0000187 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0030017) ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0002479))) +SubClassOf(obo:CL_0000444 obo:CL_0000737) +SubClassOf(obo:CL_0000444 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0002479)) # Class: obo:CL_0000445 (apoptosis fated cell) @@ -8548,6 +9122,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000451 "BTO:0002042") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000451 "CALOHA:TS-0194") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000451 "FMA:83036") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000451 "MESH:D003713") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000451 "ZFA:0009209") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000451 "interdigitating cell") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000451 "veiled cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000451 cl:cellxgene_subset) @@ -8556,11 +9131,20 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000451 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000451 "dendritic cell") EquivalentClasses(obo:CL_0000451 ObjectIntersectionOf(obo:CL_0000738 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0042613) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001003) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001024) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289) ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001407) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001816) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002504) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0019882) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045580))) SubClassOf(obo:CL_0000451 obo:CL_0000113) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000451 obo:CL_0000738) +SubClassOf(obo:CL_0000451 obo:CL_0000145) +SubClassOf(obo:CL_0000451 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0042613)) +SubClassOf(obo:CL_0000451 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002)) +SubClassOf(obo:CL_0000451 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001003)) +SubClassOf(obo:CL_0000451 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020)) +SubClassOf(obo:CL_0000451 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001024)) +SubClassOf(obo:CL_0000451 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289)) +SubClassOf(obo:CL_0000451 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001816)) +SubClassOf(obo:CL_0000451 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045580)) DisjointClasses(obo:CL_0000451 obo:CL_0000542) # Class: obo:CL_0000452 (thyroid hormone secreting cell) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000452 "ZFA:0009210") AnnotationAssertion(rdfs:label obo:CL_0000452 "thyroid hormone secreting cell") SubClassOf(obo:CL_0000452 obo:CL_0000163) @@ -8578,17 +9162,22 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000453 core:human_reference_atlas) AnnotationAssertion(rdfs:comment obo:CL_0000453 "Originally described in the dendritic cell ontology (DC_CL:0000021 )(PMID:19243617). These cells are also CD1a-high, CD14-negative, CD207-positive (langerin), CD324-positive (E-cadherin), and DCIR-positive. They reside in the epidermis.") AnnotationAssertion(rdfs:label obo:CL_0000453 "Langerhans cell") EquivalentClasses(obo:CL_0000453 ObjectIntersectionOf(obo:CL_0000990 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001293) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002828))) +SubClassOf(obo:CL_0000453 obo:CL_0000766) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000453 obo:CL_0000990) +SubClassOf(obo:CL_0000453 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001293)) SubClassOf(obo:CL_0000453 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000763)) +SubClassOf(obo:CL_0000453 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002828)) # Class: obo:CL_0000454 (epinephrine secreting cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:12438093") obo:IAO_0000115 obo:CL_0000454 "A cell capable of producing epinephrine. Epiniphrine is synthesized from norepiniphrine by the actions of the phenylethanolamine N-methyltransferase enzyme, which is expressed in the adrenal glands, androgenic neurons, and in other cell types.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000454 "ZFA:0009211") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GO:0048242") oboInOwl:hasExactSynonym obo:CL_0000454 "adrenaline secreting cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000454 "epinephrin secreting cell") AnnotationAssertion(rdfs:label obo:CL_0000454 "epinephrine secreting cell") EquivalentClasses(obo:CL_0000454 ObjectIntersectionOf(obo:CL_0000151 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0048242))) SubClassOf(obo:CL_0000454 obo:CL_0000457) +SubClassOf(obo:CL_0000454 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0048242)) # Class: obo:CL_0000455 (obsolete starch sheath cell) @@ -8599,37 +9188,49 @@ AnnotationAssertion(owl:deprecated obo:CL_0000455 "true"^^xsd:boolean) # Class: obo:CL_0000456 (mineralocorticoid secreting cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0000456 "Any secretory cell that is capable of some mineralocorticoid secretion.") AnnotationAssertion(rdfs:label obo:CL_0000456 "mineralocorticoid secreting cell") EquivalentClasses(obo:CL_0000456 ObjectIntersectionOf(obo:CL_0000151 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0035931))) +SubClassOf(obo:CL_0000456 obo:CL_0000174) +SubClassOf(obo:CL_0000456 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0035931)) # Class: obo:CL_0000457 (biogenic amine secreting cell) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000457 "ZFA:0009212") AnnotationAssertion(rdfs:label obo:CL_0000457 "biogenic amine secreting cell") SubClassOf(obo:CL_0000457 obo:CL_0000151) # Class: obo:CL_0000458 (serotonin secreting cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:19630576") obo:IAO_0000115 obo:CL_0000458 "A cell type that secretes 5-Hydroxytryptamine (serotonin).") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000458 "ZFA:0009213") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000458 "5-HT secreting cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000458 "5-Hydroxytryptamine secreting cell") AnnotationAssertion(rdfs:label obo:CL_0000458 "serotonin secreting cell") EquivalentClasses(obo:CL_0000458 ObjectIntersectionOf(obo:CL_0000151 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001820))) SubClassOf(obo:CL_0000458 obo:CL_0000457) +SubClassOf(obo:CL_0000458 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001820)) # Class: obo:CL_0000459 (noradrenergic cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:068340007X") obo:IAO_0000115 obo:CL_0000459 "A cell capable of producting norepiniphrine. Norepiniphrine is a catecholamine with multiple roles including as a hormone and a neurotransmitter. In addition, epiniphrine is synthesized from norepiniphrine by the actions of the phenylethanolamine N-methyltransferase enzyme.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000459 "ZFA:0009214") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000459 "noradrenaline secreting cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000459 "norepinephrin secreting cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000459 "norepinephrine secreting cell") AnnotationAssertion(rdfs:label obo:CL_0000459 "noradrenergic cell") EquivalentClasses(obo:CL_0000459 ObjectIntersectionOf(obo:CL_0000151 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0048243))) SubClassOf(obo:CL_0000459 obo:CL_0000457) +SubClassOf(obo:CL_0000459 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0048243)) # Class: obo:CL_0000460 (glucocorticoid secreting cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0000460 "Any secretory cell that is capable of some glucocorticoid secretion.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000460 "ZFA:0009215") AnnotationAssertion(rdfs:label obo:CL_0000460 "glucocorticoid secreting cell") EquivalentClasses(obo:CL_0000460 ObjectIntersectionOf(obo:CL_0000151 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0035933))) +SubClassOf(obo:CL_0000460 obo:CL_0000174) +SubClassOf(obo:CL_0000460 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0035933)) # Class: obo:CL_0000461 (obo:CL_0000461) @@ -8640,25 +9241,28 @@ AnnotationAssertion(owl:deprecated obo:CL_0000461 "true"^^xsd:boolean) # Class: obo:CL_0000462 (adepithelial cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1016/S0925-4773(97)00654-0") obo:IAO_0000115 obo:CL_0000462 "A cell of mesodermal origin that is closely associated with the epithelium of an imaginal disc. It is a precursor of some of the insect's adult muscles.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000462 "FBbt:00003219") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000462 "FBbt:00003219") AnnotationAssertion(rdfs:label obo:CL_0000462 "adepithelial cell") +SubClassOf(obo:CL_0000462 obo:CL_0000255) SubClassOf(obo:CL_0000462 obo:CL_0000680) SubClassOf(obo:CL_0000462 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_50557)) # Class: obo:CL_0000463 (epidermal cell (sensu Arthropoda)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FlyBase:ds") Annotation(oboInOwl:hasDbXref "ISBN:ISBN:978-0801481253") obo:IAO_0000115 obo:CL_0000463 "An epidermal cell that secretes chitinous cuticle from its apical side.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000463 "FBbt:00007325") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000463 "FBbt:00007325") AnnotationAssertion(rdfs:comment obo:CL_0000463 "While insect epidermis is generally columnar/cuboidal, there are certainly well studied cases where it is not (e.g.- Rhodnius prolixus when starved). So it would be safer to add this as a differentium for particular species where this is known. -DSJ.") AnnotationAssertion(rdfs:label obo:CL_0000463 "epidermal cell (sensu Arthropoda)") +SubClassOf(obo:CL_0000463 obo:CL_0000255) SubClassOf(obo:CL_0000463 obo:CL_0000362) +SubClassOf(obo:CL_0000463 obo:CL_0000710) SubClassOf(obo:CL_0000463 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_6656)) SubClassOf(obo:CL_0000463 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000464)) # Class: obo:CL_0000464 (epidermoblast) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:7576311") obo:IAO_0000115 obo:CL_0000464 "An epidermal progenitor cell that arises from neuroectoderm and in turn gives rise to the epidermal sheath of ventral and cephalic regions.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000464 "FBbt:00004994") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000464 "FBbt:00004994") AnnotationAssertion(rdfs:label obo:CL_0000464 "epidermoblast") SubClassOf(obo:CL_0000464 obo:CL_0000055) SubClassOf(obo:CL_0000464 obo:CL_0000710) @@ -8667,8 +9271,9 @@ SubClassOf(obo:CL_0000464 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000114)) # Class: obo:CL_0000465 (cardioblast (sensu Arthropoda)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1007/BF00360522") obo:IAO_0000115 obo:CL_0000465 "A precursor of the cells that form the dorsal vessel of arthropods.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000465 "FBbt:00001666") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000465 "FBbt:00001666") AnnotationAssertion(rdfs:label obo:CL_0000465 "cardioblast (sensu Arthropoda)") +SubClassOf(obo:CL_0000465 obo:CL_0000255) SubClassOf(obo:CL_0000465 obo:CL_0010021) SubClassOf(obo:CL_0000465 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_6656)) @@ -8681,6 +9286,7 @@ AnnotationAssertion(owl:deprecated obo:CL_0000466 "true"^^xsd:boolean) # Class: obo:CL_0000467 (adrenocorticotropic hormone secreting cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "SANBI:mhl") obo:IAO_0000115 obo:CL_0000467 "A peptide hormone secreting cell that produces adrenocorticotropin, or corticotropin.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000467 "ZFA:0009216") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GO:0051458") oboInOwl:hasExactSynonym obo:CL_0000467 "ACTH secreting cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000467 "adrenocorticotrophic hormone secreting cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000467 "corticotrophin hormone secreting cell") @@ -8688,27 +9294,32 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000467 "corticotropin hormo AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GO:0051458") oboInOwl:hasExactSynonym obo:CL_0000467 "corticotropin secreting cell") AnnotationAssertion(rdfs:label obo:CL_0000467 "adrenocorticotropic hormone secreting cell") EquivalentClasses(obo:CL_0000467 ObjectIntersectionOf(obo:CL_0000151 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0051458))) +SubClassOf(obo:CL_0000467 obo:CL_0000167) +SubClassOf(obo:CL_0000467 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0051458)) # Class: obo:CL_0000468 (neuroglioblast (sensu Nematoda and Protostomia)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1002/glia.21162") obo:IAO_0000115 obo:CL_0000468 "A precursor of the central nervous system that gives rise to both neurons and glial cells.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000468 "FBbt:00005147") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000468 "FBbt:00005147") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000468 "neuro-glioblast") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000468 "neuroglioblast") AnnotationAssertion(rdfs:label obo:CL_0000468 "neuroglioblast (sensu Nematoda and Protostomia)") SubClassOf(obo:CL_0000468 obo:CL_0000047) +SubClassOf(obo:CL_0000468 obo:CL_0000255) SubClassOf(obo:CL_0000468 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_33317)) # Class: obo:CL_0000469 (ganglion mother cell) AnnotationAssertion(obo:IAO_0000115 obo:CL_0000469 "A neural progenitor cell that is the daughter of a neuroblast (sensu arthopoda). The progeny of ganglion mother cells develop into neurons, glia and (occasionally) epithelial cells.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000469 "FBbt:00005149") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000469 "FBbt:00005149") AnnotationAssertion(rdfs:label obo:CL_0000469 "ganglion mother cell") +SubClassOf(obo:CL_0000469 obo:BFO_0000002) SubClassOf(obo:CL_0000469 obo:CL_0011020) SubClassOf(obo:CL_0000469 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000338)) # Class: obo:CL_0000470 (digestive enzyme secreting cell) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000470 "ZFA:0009217") AnnotationAssertion(rdfs:label obo:CL_0000470 "digestive enzyme secreting cell") SubClassOf(obo:CL_0000470 obo:CL_0000154) @@ -8734,7 +9345,7 @@ SubClassOf(obo:CL_0000473 obo:CL_0000000) # Class: obo:CL_0000474 (pericardial nephrocyte) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBbt:00003184") Annotation(oboInOwl:hasDbXref "GO:0061320") Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:19783135") obo:IAO_0000115 obo:CL_0000474 "An insect renal cell that filters hemolymph and is found with other pericardial nephrocytes in two rows flanking the dorsal vessel.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000474 "FBbt:00005058") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000474 "FBbt:00005058") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBbt:00005058") Annotation(oboInOwl:hasDbXref "GO:0061320") oboInOwl:hasNarrowSynonym obo:CL_0000474 "pericardial cell") AnnotationAssertion(rdfs:label obo:CL_0000474 "pericardial nephrocyte") SubClassOf(obo:CL_0000474 obo:CL_0000519) @@ -8752,6 +9363,7 @@ AnnotationAssertion(owl:deprecated obo:CL_0000475 "true"^^xsd:boolean) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ISBN:0517223651") Annotation(oboInOwl:hasDbXref "SANBI:mhl") obo:IAO_0000115 obo:CL_0000476 "A basophil cell of the anterior pituitary that produces thyroid stimulating hormone, thyrotrophin. This cell type is elongated, polygonal and lie in clusters towards the adenohypophyseal center.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000476 "FMA:83099") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000476 "MESH:D052684") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000476 "ZFA:0009218") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000476 "beta-basophil") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000476 "thyroid stimulating hormone secreting cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000476 "thyrotrope") @@ -8764,10 +9376,12 @@ SubClassOf(obo:CL_0000476 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0070460)) AnnotationAssertion(obo:IAO_0000115 obo:CL_0000477 "A somatic epithelial cell of the insect egg chamber.") AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000477 "follicle cell") AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000477 "ovarian follicle cell") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000477 "FBbt:00004904") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000477 "FBbt:00004904") AnnotationAssertion(rdfs:label obo:CL_0000477 "follicle cell of egg chamber") +SubClassOf(obo:CL_0000477 obo:BFO_0000002) +SubClassOf(obo:CL_0000477 obo:CL_0000255) SubClassOf(obo:CL_0000477 obo:CL_0000500) -SubClassOf(obo:CL_0000477 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000992)) +SubClassOf(obo:CL_0000477 obo:CL_2000064) SubClassOf(Annotation(oboInOwl:source ) obo:CL_0000477 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_50557)) SubClassOf(obo:CL_0000477 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000441)) @@ -8798,9 +9412,11 @@ SubClassOf(obo:CL_0000481 obo:CL_0000167) # Class: obo:CL_0000482 (juvenile hormone secreting cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GO:tfm") obo:IAO_0000115 obo:CL_0000482 "An endocrine cell that secretes juvenile hormone.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000482 "FBbt:00058020") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000482 "FBbt:00058020") AnnotationAssertion(rdfs:label obo:CL_0000482 "juvenile hormone secreting cell") EquivalentClasses(obo:CL_0000482 ObjectIntersectionOf(obo:CL_0000151 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045443))) +SubClassOf(obo:CL_0000482 obo:CL_0000151) +SubClassOf(obo:CL_0000482 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045443)) # Class: obo:CL_0000483 (bombesin stimulating hormone secreting cell) @@ -8820,6 +9436,7 @@ AnnotationAssertion(rdfs:comment obo:CL_0000484 "They are CD88-positive. The cyt AnnotationAssertion(rdfs:label obo:CL_0000484 "connective tissue type mast cell") EquivalentClasses(obo:CL_0000484 ObjectIntersectionOf(obo:CL_0000097 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002384))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000484 obo:CL_0000097) +SubClassOf(obo:CL_0000484 obo:CL_0002320) # Class: obo:CL_0000485 (mucosal type mast cell) @@ -8833,13 +9450,15 @@ AnnotationAssertion(rdfs:comment obo:CL_0000485 "They are CD88-negative. The cyt AnnotationAssertion(rdfs:label obo:CL_0000485 "mucosal type mast cell") EquivalentClasses(obo:CL_0000485 ObjectIntersectionOf(obo:CL_0000097 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001961) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002540))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000485 obo:CL_0000097) +SubClassOf(obo:CL_0000485 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001961)) +SubClassOf(obo:CL_0000485 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002540)) # Class: obo:CL_0000486 (garland cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:19783135") Annotation(oboInOwl:hasDbXref "fbbt:00005059") obo:IAO_0000115 obo:CL_0000486 "A large binucleate cell that forms a 'garland' around the anterior end of the proventriculus (cardia) at its junction with the esophagus in both adults and larvae flies. Each cell is surrounded by a basement membrane and there are numerous micro-invaginations (lacunae) extending from the surface into the cytoplasm. At the mouth of each lacuna is a doubled filament forming a specialised filtration system (diaphragm). The filtrate is endocytosed from the lacunae.") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GO:0061321") oboInOwl:hasBroadSynonym obo:CL_0000486 "garland nephrocyte") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000486 "BTO:0004596") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000486 "FBbt:00005059") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000486 "FBbt:00005059") AnnotationAssertion(rdfs:label obo:CL_0000486 "garland cell") SubClassOf(obo:CL_0000486 obo:CL_0000227) SubClassOf(obo:CL_0000486 obo:CL_0000519) @@ -8848,18 +9467,21 @@ SubClassOf(obo:CL_0000486 obo:CL_0002520) # Class: obo:CL_0000487 (oenocyte) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:bf") Annotation(oboInOwl:hasDbXref "PMID:11171397") Annotation(oboInOwl:hasDbXref "PMID:24397521") Annotation(oboInOwl:hasDbXref "PMID:34208190") Annotation(oboInOwl:hasDbXref "https://www.merriam-webster.com/dictionary/oenocyte") obo:IAO_0000115 obo:CL_0000487 "A secretory cell of ectodermal origin. This cell may have important functions in fatty acid and hydrocarbon metabolism and is metabolically linked to the fat body and tracheae. This cell is exclusive of arthropods.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000487 "FBbt:00004995") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000487 "FBbt:00004995") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:24397521") Annotation(oboInOwl:hasDbXref "PMID:34208190") rdfs:comment obo:CL_0000487 "Oenocytes are highly variable in size, shape, cluster formation and anatomical location. In adults, oenocytes tend to be smaller but more numerous than in larvae. While oenocytes have been found in arachnids and crustaceans, they have been most abundantly described in insects.") AnnotationAssertion(rdfs:label obo:CL_0000487 "oenocyte") SubClassOf(obo:CL_0000487 obo:CL_0000151) +SubClassOf(obo:CL_0000487 obo:CL_0000255) SubClassOf(obo:CL_0000487 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_6656)) # Class: obo:CL_0000488 (visible light photoreceptor cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0000488 "A photoreceptor cell that detects visible light.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000488 "ZFA:0009219") AnnotationAssertion(rdfs:label obo:CL_0000488 "visible light photoreceptor cell") EquivalentClasses(obo:CL_0000488 ObjectIntersectionOf(obo:CL_0000210 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0009584))) SubClassOf(obo:CL_0000488 obo:CL_0000210) +SubClassOf(obo:CL_0000488 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0009584)) # Class: obo:CL_0000489 (scotopic photoreceptor cell) @@ -8868,6 +9490,7 @@ SubClassOf(obo:CL_0000489 obo:CL_0000210) # Class: obo:CL_0000490 (photopic photoreceptor cell) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000490 "ZFA:0009220") AnnotationAssertion(rdfs:label obo:CL_0000490 "photopic photoreceptor cell") SubClassOf(obo:CL_0000490 obo:CL_0000488) @@ -8894,6 +9517,7 @@ AnnotationAssertion(rdfs:label obo:CL_0000492 "CD4-positive helper T cell") EquivalentClasses(obo:CL_0000492 ObjectIntersectionOf(obo:CL_0000624 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001816))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000492 obo:CL_0000624) SubClassOf(obo:CL_0000492 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000896)) +SubClassOf(obo:CL_0000492 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001816)) SubClassOf(obo:CL_0000492 ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0030217)) # Class: obo:CL_0000493 (obsolete regulatory T cell) @@ -8906,25 +9530,30 @@ AnnotationAssertion(owl:deprecated obo:CL_0000493 "true"^^xsd:boolean) # Class: obo:CL_0000494 (UV sensitive photoreceptor cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0000494 "A photoreceptor cell that detects ultraviolet light.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000494 "ZFA:0009221") AnnotationAssertion(rdfs:label obo:CL_0000494 "UV sensitive photoreceptor cell") EquivalentClasses(obo:CL_0000494 ObjectIntersectionOf(obo:CL_0000210 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0009589))) SubClassOf(obo:CL_0000494 obo:CL_0000210) +SubClassOf(obo:CL_0000494 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0009589)) # Class: obo:CL_0000495 (blue sensitive photoreceptor cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GO:tfm") obo:IAO_0000115 obo:CL_0000495 "A photoreceptor cell that is sensitive to blue light.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000495 "ZFA:0009222") AnnotationAssertion(rdfs:label obo:CL_0000495 "blue sensitive photoreceptor cell") SubClassOf(obo:CL_0000495 obo:CL_0000490) # Class: obo:CL_0000496 (green sensitive photoreceptor cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GO:tfm") obo:IAO_0000115 obo:CL_0000496 "A photoreceptor cell that is sensitive to green light.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000496 "ZFA:0009223") AnnotationAssertion(rdfs:label obo:CL_0000496 "green sensitive photoreceptor cell") SubClassOf(obo:CL_0000496 obo:CL_0000490) # Class: obo:CL_0000497 (red sensitive photoreceptor cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GO:tfm") obo:IAO_0000115 obo:CL_0000497 "A photoreceptor cell that is sensitive to red light.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000497 "ZFA:0009224") AnnotationAssertion(rdfs:label obo:CL_0000497 "red sensitive photoreceptor cell") SubClassOf(obo:CL_0000497 obo:CL_0000490) @@ -8932,6 +9561,7 @@ SubClassOf(obo:CL_0000497 obo:CL_0000490) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "http://en.wikipedia.org/wiki/Interneuron") obo:IAO_0000115 obo:CL_0000498 "An interneuron (also called relay neuron, association neuron or local circuit neuron) is a multipolar neuron which connects afferent neurons and efferent neurons in neural pathways. Like motor neurons, interneuron cell bodies are always located in the central nervous system (CNS).") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000498 "FMA:84776") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000498 "ZFA:0009225") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000498 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000498 "inhibitory interneuron") SubClassOf(obo:CL_0000498 obo:CL_0000099) @@ -8942,10 +9572,12 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl AnnotationAssertion(obo:RO_0002175 obo:CL_0000499 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000499 "BTO:0002064") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000499 "FMA:83624") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000499 "ZFA:0009226") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000499 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000499 cl:general_cell_types_upper_slim) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000499 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000499 "stromal cell") +SubClassOf(obo:CL_0000499 obo:BFO_0000002) SubClassOf(obo:CL_0000499 obo:CL_0002320) SubClassOf(obo:CL_0000499 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000134)) @@ -8961,6 +9593,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D006107") obo:IAO_000011 AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000501 "BTO:0000542") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000501 "CALOHA:TS-0729") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000501 "FMA:18718") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000501 "ZFA:0009227") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000501 "granulosa cell of ovary") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000501 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000501 "granulosa cell") @@ -8971,22 +9604,24 @@ SubClassOf(obo:CL_0000501 obo:CL_0002174) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D019864") obo:IAO_0000115 obo:CL_0000502 "A cell found throughout the gastrointestinal tract and in the pancreas. They secrete somatostatin in both an endocrine and paracrine manner. Somatostatin inhibits gastrin, cholecystokinin, insulin, glucagon, pancreatic enzymes, and gastric hydrochloric acid. A variety of substances which inhibit gastric acid secretion (vasoactive intestinal peptide, calcitonin gene-related peptide, cholecystokinin, beta-adrenergic agonists, and gastric inhibitory peptide) are thought to act by releasing somatostatin.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000502 "FMA:62935") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000502 "ZFA:0009228") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000502 "D cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000502 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000502 "type D enteroendocrine cell") SubClassOf(obo:CL_0000502 obo:CL_0000164) -SubClassOf(obo:CL_0000502 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0070253)) +SubClassOf(obo:CL_0000502 obo:CL_0000172) # Class: obo:CL_0000503 (theca cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D013799") obo:IAO_0000115 obo:CL_0000503 "A flattened stroma cell forming a sheath or theca outside the basal lamina lining the mature ovarian follicle. Thecal interstitial or stromal cells are steroidogenic, and produce primarily androgens which serve as precusors of estrogens in the granulosa cells.") AnnotationAssertion(obo:RO_0002175 obo:CL_0000503 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000503 "BTO:0002850") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000503 "ZFA:0009229") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000503 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000503 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000503 "theca cell") -SubClassOf(obo:CL_0000503 obo:CL_0000499) SubClassOf(obo:CL_0000503 obo:CL_0000593) +SubClassOf(obo:CL_0000503 obo:CL_0002132) SubClassOf(obo:CL_0000503 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001305)) # Class: obo:CL_0000504 (enterochromaffin-like cell) @@ -9002,18 +9637,21 @@ SubClassOf(obo:CL_0000504 obo:CL_0002274) # Class: obo:CL_0000505 (substance P secreting cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GO:tfm") obo:IAO_0000115 obo:CL_0000505 "A peptide hormone secreting cell that secretes substance P.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000505 "ZFA:0009230") AnnotationAssertion(rdfs:label obo:CL_0000505 "substance P secreting cell") SubClassOf(obo:CL_0000505 obo:CL_0000167) # Class: obo:CL_0000506 (enkephalin secreting cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GO:tfm") obo:IAO_0000115 obo:CL_0000506 "An endorphine cell that secretes enkephalin.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000506 "ZFA:0009231") AnnotationAssertion(rdfs:label obo:CL_0000506 "enkephalin secreting cell") SubClassOf(obo:CL_0000506 obo:CL_0000507) # Class: obo:CL_0000507 (endorphin secreting cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GO:tfm") obo:IAO_0000115 obo:CL_0000507 "A peptide hormone secreting cell that secretes endorphin.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000507 "ZFA:0009232") AnnotationAssertion(rdfs:label obo:CL_0000507 "endorphin secreting cell") SubClassOf(obo:CL_0000507 obo:CL_0000167) @@ -9028,6 +9666,7 @@ AnnotationAssertion(rdfs:label obo:CL_0000508 "type G enteroendocrine cell") SubClassOf(obo:CL_0000508 obo:CL_0000164) SubClassOf(obo:CL_0000508 obo:CL_0000506) SubClassOf(obo:CL_0000508 obo:CL_0000509) +SubClassOf(obo:CL_0000508 obo:CL_0002180) SubClassOf(obo:CL_0000508 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004997)) # Class: obo:CL_0000509 (gastrin secreting cell) @@ -9047,7 +9686,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000510 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000510 "paneth cell") SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000510 obo:CL_0000150) SubClassOf(obo:CL_0000510 obo:CL_0000323) -SubClassOf(obo:CL_0000510 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001277)) +SubClassOf(obo:CL_0000510 obo:CL_0002563) SubClassOf(obo:CL_0000510 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001983)) # Class: obo:CL_0000511 (androgen binding protein secreting cell) @@ -9059,6 +9698,7 @@ SubClassOf(obo:CL_0000511 obo:CL_0000154) # Class: obo:CL_0000512 (paracrine cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0198529171") obo:IAO_0000115 obo:CL_0000512 "A paracrine cell is a secretory cell that secretes an agonist into intercellular spaces in which it diffuses to a target cell other than that which produced it.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000512 "ZFA:0009233") AnnotationAssertion(rdfs:label obo:CL_0000512 "paracrine cell") SubClassOf(obo:CL_0000512 obo:CL_0000151) @@ -9066,39 +9706,52 @@ SubClassOf(obo:CL_0000512 obo:CL_0000151) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "MESH:D032386") obo:IAO_0000115 obo:CL_0000513 "A precursor cell destined to differentiate into cardiac muscle cell.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000513 "FMA:84797") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000513 "ZFA:0009234") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000513 "cardiac muscle progenitor cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000513 "cardiomyocyte progenitor cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000513 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000513 "cardiac muscle myoblast") EquivalentClasses(obo:CL_0000513 ObjectIntersectionOf(obo:CL_0000056 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001133) ObjectSomeValuesFrom(obo:RO_0002203 obo:CL_0000746))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000513 obo:CL_0000056) +SubClassOf(obo:CL_0000513 obo:CL_0002494) +SubClassOf(obo:CL_0000513 obo:CL_0010021) +SubClassOf(obo:CL_0000513 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001133)) # Class: obo:CL_0000514 (smooth muscle myoblast) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "MESH:D032390") obo:IAO_0000115 obo:CL_0000514 "A precursor cell destined to differentiate into smooth muscle myocytes.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000514 "FMA:84798") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000514 "ZFA:0009235") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D032390") oboInOwl:hasExactSynonym obo:CL_0000514 "myoblast, smooth muscle") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000514 "satellite cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000514 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000514 "smooth muscle myoblast") EquivalentClasses(obo:CL_0000514 ObjectIntersectionOf(obo:CL_0000056 ObjectSomeValuesFrom(obo:RO_0002203 obo:CL_0000192))) +SubClassOf(obo:CL_0000514 obo:CL_0000056) +SubClassOf(obo:CL_0000514 ObjectSomeValuesFrom(obo:RO_0002203 obo:CL_0000192)) # Class: obo:CL_0000515 (skeletal muscle myoblast) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "SANBI:mhl") obo:IAO_0000115 obo:CL_0000515 "A myoblast that differentiates into skeletal muscle fibers.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000515 "FMA:84799") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000515 "ZFA:0009236") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000515 "skeletal myoblast") AnnotationAssertion(rdfs:label obo:CL_0000515 "skeletal muscle myoblast") EquivalentClasses(obo:CL_0000515 ObjectIntersectionOf(obo:CL_0000056 ObjectSomeValuesFrom(obo:RO_0002203 obo:CL_0008002))) +SubClassOf(obo:CL_0000515 obo:CL_0000056) +SubClassOf(obo:CL_0000515 obo:CL_0011026) SubClassOf(obo:CL_0000515 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000355)) +SubClassOf(obo:CL_0000515 ObjectSomeValuesFrom(obo:RO_0002203 obo:CL_0008002)) # Class: obo:CL_0000516 (perineuronal satellite cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "MESH:D027161") obo:IAO_0000115 obo:CL_0000516 "A non-neuronal cell that surrounds the neuronal cell bodies of the ganglia.") +AnnotationAssertion(obo:RO_0002175 obo:CL_0000516 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000516 "FMA:54550") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000516 "ZFA:0009237") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000516 "perineural satellite cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000516 "perineuronal satellite oligodendroglial cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000516 "satellite oligodendrocyte") +AnnotationAssertion(oboInOwl:inSubset obo:CL_0000516 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000516 "perineuronal satellite cell") SubClassOf(obo:CL_0000516 obo:CL_0000123) SubClassOf(obo:CL_0000516 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000339)) @@ -9108,6 +9761,7 @@ SubClassOf(obo:CL_0000516 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000339)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "PMID:20213546") obo:IAO_0000115 obo:CL_0000517 "A type of foam cell derived from a macrophage containing lipids in small vacuoles and typically seen in atherolosclerotic lesions, as well as other conditions.") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000517 "lipophage") AnnotationAssertion(rdfs:label obo:CL_0000517 "macrophage derived foam cell") +SubClassOf(obo:CL_0000517 obo:BFO_0000002) SubClassOf(obo:CL_0000517 obo:CL_0000891) SubClassOf(obo:CL_0000517 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000235)) @@ -9116,6 +9770,7 @@ SubClassOf(obo:CL_0000517 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000235)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0000518 "A phagocyte in vertebrates that is able to phagocytosis.") AnnotationAssertion(rdfs:label obo:CL_0000518 "phagocyte (sensu Vertebrata)") SubClassOf(obo:CL_0000518 obo:CL_0000234) +SubClassOf(obo:CL_0000518 obo:CL_0000255) SubClassOf(obo:CL_0000518 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_7742)) # Class: obo:CL_0000519 (phagocyte (sensu Nematoda and Protostomia)) @@ -9134,9 +9789,11 @@ SubClassOf(obo:CL_0000520 obo:CL_0000000) # Class: obo:CL_0000521 (fungal cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0000521 "Any cell that only exists in Fungi.") AnnotationAssertion(rdfs:label obo:CL_0000521 "fungal cell") EquivalentClasses(obo:CL_0000521 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_4751))) SubClassOf(obo:CL_0000521 obo:CL_0000255) +SubClassOf(obo:CL_0000521 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_4751)) # Class: obo:CL_0000522 (obsolete spore) @@ -9174,6 +9831,8 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000525 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000525 "syncytiotrophoblast cell") AnnotationAssertion(rdfs:seeAlso obo:CL_0000525 "https://github.com/obophenotype/cell-ontology/issues/2100") EquivalentClasses(obo:CL_0000525 ObjectIntersectionOf(obo:CL_0000351 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001908))) +SubClassOf(obo:CL_0000525 obo:CL_0000228) +SubClassOf(obo:CL_0000525 obo:CL_0000351) SubClassOf(obo:CL_0000525 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000371)) # Class: obo:CL_0000526 (afferent neuron) @@ -9181,6 +9840,7 @@ SubClassOf(obo:CL_0000525 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000037 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "MESH:D009475") obo:IAO_0000115 obo:CL_0000526 "A neuron which conveys sensory information centrally from the periphery.") AnnotationAssertion(obo:RO_0002175 obo:CL_0000526 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000526 "FMA:87653") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000526 "ZFA:0009238") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000526 "input neuron") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000526 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000526 "afferent neuron") @@ -9189,6 +9849,7 @@ SubClassOf(obo:CL_0000526 obo:CL_0000540) # Class: obo:CL_0000527 (efferent neuron) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D009476") obo:IAO_0000115 obo:CL_0000527 "A neuron which sends impulses peripherally to activate muscles or secretory cells.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000527 "ZFA:0009239") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000527 "output neuron") AnnotationAssertion(rdfs:label obo:CL_0000527 "efferent neuron") SubClassOf(obo:CL_0000527 obo:CL_0000540) @@ -9197,11 +9858,13 @@ SubClassOf(obo:CL_0000527 obo:CL_0000540) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D026602") obo:IAO_0000115 obo:CL_0000528 "A nerve cell where transmission is mediated by nitric oxide.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000528 "FMA:84792") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000528 "ZFA:0009240") AnnotationAssertion(rdfs:label obo:CL_0000528 "nitrergic neuron") SubClassOf(obo:CL_0000528 obo:CL_0000540) # Class: obo:CL_0000529 (pigmented epithelial cell) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000529 "ZFA:0009241") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000529 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000529 "pigmented epithelial cell") SubClassOf(obo:CL_0000529 obo:CL_0000710) @@ -9209,7 +9872,10 @@ SubClassOf(obo:CL_0000529 obo:CL_0000710) # Class: obo:CL_0000530 (primary neuron (sensu Teleostei)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:1842357") Annotation(oboInOwl:hasDbXref "doi:10.1242/dev.108.1.121") obo:IAO_0000115 obo:CL_0000530 "A neuron that develops during the early segmentation stages in teleosts, before the neural tube is formed.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000530 "ZFA:0009242") AnnotationAssertion(rdfs:label obo:CL_0000530 "primary neuron (sensu Teleostei)") +SubClassOf(obo:CL_0000530 obo:BFO_0000002) +SubClassOf(obo:CL_0000530 obo:CL_0000255) SubClassOf(obo:CL_0000530 obo:CL_0000540) SubClassOf(Annotation(obo:IAO_0000233 "https://github.com/obophenotype/cell-ontology/pull/1950") obo:CL_0000530 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_32443)) @@ -9219,15 +9885,19 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:1842357") obo:IAO_000011 AnnotationAssertion(oboInOwl:inSubset obo:CL_0000531 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000531 "primary sensory neuron (sensu Teleostei)") EquivalentClasses(obo:CL_0000531 ObjectIntersectionOf(obo:CL_0000101 obo:CL_0000530)) +SubClassOf(obo:CL_0000531 obo:CL_0000101) +SubClassOf(obo:CL_0000531 obo:CL_0000530) # Class: obo:CL_0000532 (CAP motoneuron) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000532 "ZFA:0009243") AnnotationAssertion(rdfs:label obo:CL_0000532 "CAP motoneuron") SubClassOf(obo:CL_0000532 obo:CL_0000533) # Class: obo:CL_0000533 (primary motor neuron (sensu Teleostei)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:1842357") obo:IAO_0000115 obo:CL_0000533 "A primary neuron (sensu Teleostei) that has a motor function.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000533 "ZFA:0009244") AnnotationAssertion(rdfs:label obo:CL_0000533 "primary motor neuron (sensu Teleostei)") SubClassOf(obo:CL_0000533 obo:CL_0000100) SubClassOf(obo:CL_0000533 obo:CL_0000530) @@ -9235,6 +9905,7 @@ SubClassOf(obo:CL_0000533 obo:CL_0000530) # Class: obo:CL_0000534 (primary interneuron (sensu Teleostei)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:1842357") obo:IAO_0000115 obo:CL_0000534 "A primary neuron (sensu Teleostei) that is neither a sensory neuron or a motor neuron.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000534 "ZFA:0009245") AnnotationAssertion(rdfs:label obo:CL_0000534 "primary interneuron (sensu Teleostei)") SubClassOf(obo:CL_0000534 obo:CL_0000099) SubClassOf(obo:CL_0000534 obo:CL_0000530) @@ -9242,15 +9913,21 @@ SubClassOf(obo:CL_0000534 obo:CL_0000530) # Class: obo:CL_0000535 (secondary neuron (sensu Teleostei)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:1842357") Annotation(oboInOwl:hasDbXref "doi:10.1242/dev.108.1.121") obo:IAO_0000115 obo:CL_0000535 "A neuron of teleosts that develops later than a primary neuron, typically during the larval stages.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000535 "ZFA:0009246") AnnotationAssertion(rdfs:label obo:CL_0000535 "secondary neuron (sensu Teleostei)") +SubClassOf(obo:CL_0000535 obo:BFO_0000002) +SubClassOf(obo:CL_0000535 obo:CL_0000255) SubClassOf(obo:CL_0000535 obo:CL_0000540) SubClassOf(Annotation(obo:IAO_0000233 "https://github.com/obophenotype/cell-ontology/pull/1950") obo:CL_0000535 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_32443)) # Class: obo:CL_0000536 (secondary motor neuron (sensu Teleostei)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:1842357") obo:IAO_0000115 obo:CL_0000536 "A secondary neuron (sensu Teleostei) that has a motor function.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000536 "ZFA:0009247") AnnotationAssertion(rdfs:label obo:CL_0000536 "secondary motor neuron (sensu Teleostei)") EquivalentClasses(obo:CL_0000536 ObjectIntersectionOf(obo:CL_0000100 obo:CL_0000535)) +SubClassOf(obo:CL_0000536 obo:CL_0000100) +SubClassOf(obo:CL_0000536 obo:CL_0000535) # Class: obo:CL_0000537 (obsolete antipodal cell) @@ -9278,10 +9955,11 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D009474") Annotation(obo AnnotationAssertion(obo:RO_0002175 obo:CL_0000540 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000540 "BTO:0000938") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000540 "CALOHA:TS-0683") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000540 "FBbt:00005106") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000540 "FBbt:00005106") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000540 "FMA:54527") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000540 "VHOG:0001483") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000540 "WBbt:0003679") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000540 "ZFA:0009248") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000540 "nerve cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000540 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000540 cl:general_cell_types_upper_slim) @@ -9299,9 +9977,11 @@ SubClassOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0019226)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "SANBI:mhl") obo:IAO_0000115 obo:CL_0000541 "A cell that originates from the neural crest and differentiates into a pigment cell.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000541 "BTO:0003217") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000541 "FMA:83377") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000541 "ZFA:0009249") AnnotationAssertion(rdfs:comment obo:CL_0000541 "Derived from UBERON:0002342 neural crest.") AnnotationAssertion(rdfs:label obo:CL_0000541 "melanoblast") SubClassOf(obo:CL_0000541 obo:CL_0000055) +SubClassOf(obo:CL_0000541 obo:CL_0011026) SubClassOf(obo:CL_0000541 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000333)) # Class: obo:CL_0000542 (lymphocyte) @@ -9313,12 +9993,16 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000542 "CALOHA:TS-0583") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000542 "FMA:62863") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000542 "MESH:D008214") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000542 "VHOG:0001535") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000542 "ZFA:0009250") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000542 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000542 core:human_reference_atlas) AnnotationAssertion(rdfs:comment obo:CL_0000542 "Editors note: consider adding taxon constraint to vertebrata (PMID:18025161)") AnnotationAssertion(rdfs:label obo:CL_0000542 "lymphocyte") EquivalentClasses(obo:CL_0000542 ObjectIntersectionOf(obo:CL_0000738 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017500) ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0000792) ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001407) ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0040072))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000542 obo:CL_0000738) +SubClassOf(obo:CL_0000542 obo:CL_0000842) +SubClassOf(obo:CL_0000542 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017500)) +SubClassOf(obo:CL_0000542 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0000792)) +SubClassOf(obo:CL_0000542 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0040072)) SubClassOf(obo:CL_0000542 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000051)) DisjointClasses(obo:CL_0000542 obo:CL_0000766) @@ -9356,7 +10040,10 @@ AnnotationAssertion(rdfs:comment obo:CL_0000545 "This cell type is compatible wi AnnotationAssertion(rdfs:label obo:CL_0000545 "T-helper 1 cell") EquivalentClasses(obo:CL_0000545 ObjectIntersectionOf(obo:CL_0000492 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001835) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001202) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001207) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032609))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000545 obo:CL_0000492) -SubClassOf(obo:CL_0000545 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000896)) +SubClassOf(obo:CL_0000545 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001835)) +SubClassOf(obo:CL_0000545 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001202)) +SubClassOf(obo:CL_0000545 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001207)) +SubClassOf(obo:CL_0000545 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032609)) # Class: obo:CL_0000546 (T-helper 2 cell) @@ -9379,7 +10066,9 @@ AnnotationAssertion(rdfs:comment obo:CL_0000546 "This cell type is compatible wi AnnotationAssertion(rdfs:label obo:CL_0000546 "T-helper 2 cell") EquivalentClasses(obo:CL_0000546 ObjectIntersectionOf(obo:CL_0000492 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001941) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001202) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001207) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032633))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000546 obo:CL_0000492) -SubClassOf(obo:CL_0000546 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000896)) +SubClassOf(obo:CL_0000546 obo:CL_0001051) +SubClassOf(obo:CL_0000546 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001941)) +SubClassOf(obo:CL_0000546 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032633)) # Class: obo:CL_0000547 (proerythroblast) @@ -9392,6 +10081,22 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000547 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000547 "proerythroblast") EquivalentClasses(obo:CL_0000547 ObjectIntersectionOf(obo:CL_0000764 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017503) ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0005730) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001024) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001083) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001839) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001889) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002978) ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0002505) ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0040072) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001945))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000547 obo:CL_0000764) +SubClassOf(obo:CL_0000547 obo:CL_0002242) +SubClassOf(obo:CL_0000547 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017503)) +SubClassOf(obo:CL_0000547 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0005730)) +SubClassOf(obo:CL_0000547 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002)) +SubClassOf(obo:CL_0000547 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004)) +SubClassOf(obo:CL_0000547 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012)) +SubClassOf(obo:CL_0000547 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020)) +SubClassOf(obo:CL_0000547 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001024)) +SubClassOf(obo:CL_0000547 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001083)) +SubClassOf(obo:CL_0000547 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084)) +SubClassOf(obo:CL_0000547 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289)) +SubClassOf(obo:CL_0000547 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001839)) +SubClassOf(obo:CL_0000547 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001889)) +SubClassOf(obo:CL_0000547 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002978)) +SubClassOf(obo:CL_0000547 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0040072)) +SubClassOf(obo:CL_0000547 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001945)) SubClassOf(obo:CL_0000547 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000038)) # Class: obo:CL_0000548 (obsolete animal cell) @@ -9410,6 +10115,7 @@ AnnotationAssertion(foaf:depiction obo:CL_0000548 "https://www.swissbiopics.org/ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0721601464") obo:IAO_0000115 obo:CL_0000549 "A nucleated immature erythrocyte, having cytoplasm generally similar to that of the earlier proerythroblast but sometimes even more basophilic, and usually regular in outline. The nucleus is still relatively large, but the chromatin strands are thicker and more deeply staining, giving a coarser appearance; the nucleoli have disappeared. This cell is CD71-positive and lacks hematopoeitic lineage markers.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000549 "FMA:83505") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000549 "ZFA:0005236") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ISBN:0721601464") oboInOwl:hasExactSynonym obo:CL_0000549 "basophilic normoblast") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ISBN:0721601464") oboInOwl:hasExactSynonym obo:CL_0000549 "early erythroblast") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ISBN:0721601464") oboInOwl:hasExactSynonym obo:CL_0000549 "early normoblast") @@ -9417,12 +10123,15 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ISBN:0721601464") oboInOwl:ha AnnotationAssertion(rdfs:label obo:CL_0000549 "basophilic erythroblast") EquivalentClasses(obo:CL_0000549 ObjectIntersectionOf(obo:CL_0000765 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017503) ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0000792) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001945))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000549 obo:CL_0000765) -SubClassOf(obo:CL_0000549 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000547)) +SubClassOf(obo:CL_0000549 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017503)) +SubClassOf(obo:CL_0000549 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0000792)) +SubClassOf(obo:CL_0000549 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001945)) # Class: obo:CL_0000550 (polychromatophilic erythroblast) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ISBN:0721601464") obo:IAO_0000115 obo:CL_0000550 "A nucleated, immature erythrocyte in which the nucleus occupies a relatively smaller part of the cell than in its precursor, the basophilic erythroblast. The cytoplasm is beginning to acquire hemoglobin and thus is no longer a purely basophilic, but takes on acidophilic aspects, which becomes progressively more marked as the cell matures. The chromatin of the nucleus is arranged in coarse, deeply staining clumps. This cell is CD71-positive and lacks hematopoeitic lineage markers.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000550 "FMA:83506") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000550 "ZFA:0005241") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ISBN:0721601464") oboInOwl:hasExactSynonym obo:CL_0000550 "intermediate erythroblast") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ISBN:0721601464") oboInOwl:hasExactSynonym obo:CL_0000550 "intermediate normoblast") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ISBN:0721601464") oboInOwl:hasExactSynonym obo:CL_0000550 "polychromatic erythroblast") @@ -9432,6 +10141,9 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ISBN:0721601464") oboInOwl:ha AnnotationAssertion(rdfs:label obo:CL_0000550 "polychromatophilic erythroblast") EquivalentClasses(obo:CL_0000550 ObjectIntersectionOf(obo:CL_0000765 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017504) ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0000792) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001945))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000550 obo:CL_0000765) +SubClassOf(obo:CL_0000550 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017504)) +SubClassOf(obo:CL_0000550 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0000792)) +SubClassOf(obo:CL_0000550 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001945)) SubClassOf(obo:CL_0000550 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000549)) # Class: obo:CL_0000551 (unimodal nocireceptor) @@ -9451,6 +10163,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ISBN:0721601464") oboInOwl:ha AnnotationAssertion(rdfs:label obo:CL_0000552 "orthochromatic erythroblast") EquivalentClasses(obo:CL_0000552 ObjectIntersectionOf(obo:CL_0000765 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017502) ObjectSomeValuesFrom(obo:RO_0000056 obo:GO_0030263))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000552 obo:CL_0000765) +SubClassOf(obo:CL_0000552 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017502)) +SubClassOf(obo:CL_0000552 ObjectSomeValuesFrom(obo:RO_0000056 obo:GO_0030263)) SubClassOf(obo:CL_0000552 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000550)) # Class: obo:CL_0000553 (megakaryocyte progenitor cell) @@ -9476,8 +10190,23 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000553 core:human_reference_atlas) AnnotationAssertion(rdfs:comment obo:CL_0000553 "Lineage negative is described here as CD2-negative, CD3-negative, CD4-negative, CD5-negative, CD8a-negative, CD14-negative, CD19-negative, CD20-negative, CD56-negative, Ly6g-negative, and Ter119-negative.") AnnotationAssertion(rdfs:label obo:CL_0000553 "megakaryocyte progenitor cell") EquivalentClasses(obo:CL_0000553 ObjectIntersectionOf(obo:CL_0000839 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001024) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001083) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001839) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001889) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002978) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002981) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0007113) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030219))) +SubClassOf(obo:CL_0000553 obo:CL_0000763) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000553 obo:CL_0000839) +SubClassOf(obo:CL_0000553 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002)) +SubClassOf(obo:CL_0000553 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004)) +SubClassOf(obo:CL_0000553 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012)) +SubClassOf(obo:CL_0000553 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020)) +SubClassOf(obo:CL_0000553 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001024)) +SubClassOf(obo:CL_0000553 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001083)) +SubClassOf(obo:CL_0000553 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084)) +SubClassOf(obo:CL_0000553 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289)) +SubClassOf(obo:CL_0000553 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001839)) +SubClassOf(obo:CL_0000553 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001889)) +SubClassOf(obo:CL_0000553 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002978)) +SubClassOf(obo:CL_0000553 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002981)) SubClassOf(obo:CL_0000553 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000050)) +SubClassOf(obo:CL_0000553 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0007113)) +SubClassOf(obo:CL_0000553 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030219)) # Class: obo:CL_0000554 (gastrin stimulating hormone secreting cell) @@ -9516,6 +10245,7 @@ DisjointClasses(obo:CL_0000556 obo:CL_0000764) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:amm") Annotation(oboInOwl:hasDbXref "GOC:dsd") Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "GO_REF:0000031") Annotation(oboInOwl:hasDbXref "ISBN:0721601464") Annotation(oboInOwl:hasDbXref "MESH:D055014") Annotation(oboInOwl:hasDbXref "PMCID:PMC2213186") Annotation(oboInOwl:hasDbXref "PMCID:PMC548021") Annotation(oboInOwl:hasDbXref "PMID:16551251") Annotation(oboInOwl:hasDbXref "PMID:16647566") Annotation(oboInOwl:hasDbXref "http://en.wikipedia.org/wiki/CFU-GM") Annotation(oboInOwl:hasDbXref "http://www.copewithcytokines.de") obo:IAO_0000115 obo:CL_0000557 "A hematopoietic progenitor cell that is committed to the granulocyte and monocyte lineages. These cells are CD123-positive, and do not express Gata1 or Gata2 but do express C/EBPa, and Pu.1.") AnnotationAssertion(obo:RO_0002175 obo:CL_0000557 obo:NCBITaxon_9606) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "http://www.copewithcytokines.de") oboInOwl:hasBroadSynonym obo:CL_0000557 "CFU-C , Colony forming unit in culture") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000557 "ZFA:0009251") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ISBN:0721601464") Annotation(oboInOwl:hasDbXref "PMCID:PMC2213186") Annotation(oboInOwl:hasDbXref "PMCID:PMC548021") oboInOwl:hasExactSynonym obo:CL_0000557 "colony forming unit granulocyte macrophage") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ISBN:0721601464") Annotation(oboInOwl:hasDbXref "PMCID:PMC2213186") Annotation(oboInOwl:hasDbXref "PMCID:PMC548021") oboInOwl:hasExactSynonym obo:CL_0000557 "granulocyte-macrophage progenitor") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000557 "granulocyte/monocyte precursor") @@ -9527,8 +10257,17 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000557 core:human_reference_atlas) AnnotationAssertion(rdfs:comment obo:CL_0000557 "Originally described in the dendritic cell ontology (DC_CL:0000042)(PMID:19243617). GMPs are reportedly CD16-positive, CD32-positive, CD34-positive, CD38-positive, CD45RA-positive, CD110-negative, CD117-positive, CD123-positive, and SCA1-negative.") AnnotationAssertion(rdfs:label obo:CL_0000557 "granulocyte monocyte progenitor cell") EquivalentClasses(obo:CL_0000557 ObjectIntersectionOf(obo:CL_0002032 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002371) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001944) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000005307) ObjectSomeValuesFrom(obo:CL_4030045 obo:PR_000007857) ObjectSomeValuesFrom(obo:CL_4030045 obo:PR_000007858) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001865) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030225) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030851))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000557 obo:CL_0002032) -SubClassOf(obo:CL_0000557 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000049)) +SubClassOf(obo:CL_0000557 obo:CL_0000763) +SubClassOf(obo:CL_0000557 obo:CL_0001012) +SubClassOf(obo:CL_0000557 obo:CL_0011026) +SubClassOf(obo:CL_0000557 obo:CL_1001610) +SubClassOf(obo:CL_0000557 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001944)) +SubClassOf(obo:CL_0000557 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000005307)) +SubClassOf(obo:CL_0000557 ObjectSomeValuesFrom(obo:CL_4030045 obo:PR_000007857)) +SubClassOf(obo:CL_0000557 ObjectSomeValuesFrom(obo:CL_4030045 obo:PR_000007858)) +SubClassOf(obo:CL_0000557 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001865)) +SubClassOf(obo:CL_0000557 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030225)) +SubClassOf(obo:CL_0000557 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030851)) # Class: obo:CL_0000558 (reticulocyte) @@ -9536,12 +10275,26 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000558 "BTO:0001173") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000558 "CALOHA:TS-0864") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000558 "MESH:D012156") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000558 "ZFA:0009252") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000558 cl:blood_and_immune_upper_slim) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000558 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000558 "reticulocyte") EquivalentClasses(obo:CL_0000558 ObjectIntersectionOf(obo:CL_0000764 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001024) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001083) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001839) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001889) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002978) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001945) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0071971))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000558 obo:CL_0000764) +SubClassOf(obo:CL_0000558 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002)) +SubClassOf(obo:CL_0000558 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004)) +SubClassOf(obo:CL_0000558 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012)) +SubClassOf(obo:CL_0000558 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020)) +SubClassOf(obo:CL_0000558 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001024)) +SubClassOf(obo:CL_0000558 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001083)) +SubClassOf(obo:CL_0000558 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084)) +SubClassOf(obo:CL_0000558 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289)) +SubClassOf(obo:CL_0000558 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001839)) +SubClassOf(obo:CL_0000558 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001889)) +SubClassOf(obo:CL_0000558 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002978)) +SubClassOf(obo:CL_0000558 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001945)) SubClassOf(obo:CL_0000558 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000552)) +SubClassOf(obo:CL_0000558 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0071971)) # Class: obo:CL_0000559 (promonocyte) @@ -9549,12 +10302,16 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl AnnotationAssertion(obo:RO_0002175 obo:CL_0000559 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000559 "BTO:0004657") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000559 "FMA:83551") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000559 "ZFA:0009253") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000559 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000559 core:human_reference_atlas) AnnotationAssertion(rdfs:comment obo:CL_0000559 "Morphology: Mononuclear cell, diameter 14-18 _M, fine azurophilic granules; markers: CD11b (shared with many other myeloid cells); location: Adult: bone marrow; Fetal: Liver, Yolk Sac; role or process: hematopoiesis, monocyte development; lineage: hematopoietic, myeloid.") AnnotationAssertion(rdfs:label obo:CL_0000559 "promonocyte") EquivalentClasses(obo:CL_0000559 ObjectIntersectionOf(obo:CL_0002194 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0042582) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001012) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030224))) +SubClassOf(obo:CL_0000559 obo:CL_0000763) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000559 obo:CL_0002194) +SubClassOf(obo:CL_0000559 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0042582)) +SubClassOf(obo:CL_0000559 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001012)) SubClassOf(obo:CL_0000559 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000040)) # Class: obo:CL_0000560 (band form neutrophil) @@ -9564,11 +10321,20 @@ AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000560 "band") AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000560 "band cell") AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000560 "band form") AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000560 "stab cell") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000560 "ZFA:0009254") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000560 "rod neutrophil") AnnotationAssertion(rdfs:comment obo:CL_0000560 "Found in the Band 1 fraction.") AnnotationAssertion(rdfs:label obo:CL_0000560 "band form neutrophil") EquivalentClasses(obo:CL_0000560 ObjectIntersectionOf(obo:CL_0000096 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017506) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001944) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000005307) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000007597) ObjectSomeValuesFrom(obo:CL_4030045 obo:PR_000009978) ObjectSomeValuesFrom(obo:CL_4030045 obo:PR_000010799) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000009129) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000010543) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001012) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001337) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001580))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000560 obo:CL_0000096) +SubClassOf(obo:CL_0000560 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017506)) +SubClassOf(obo:CL_0000560 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001944)) +SubClassOf(obo:CL_0000560 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000005307)) +SubClassOf(obo:CL_0000560 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000007597)) +SubClassOf(obo:CL_0000560 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000009129)) +SubClassOf(obo:CL_0000560 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000010543)) +SubClassOf(obo:CL_0000560 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001337)) +SubClassOf(obo:CL_0000560 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001580)) SubClassOf(obo:CL_0000560 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000582)) # Class: obo:CL_0000561 (amacrine cell) @@ -9577,6 +10343,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl AnnotationAssertion(obo:RO_0002175 obo:CL_0000561 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000561 "BTO:0004044") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000561 "FMA:67766") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000561 "ZFA:0009255") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000561 "amacrine neuron") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1038/s41598-020-66092-9") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_0000561 "AC") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1038/s41598-020-66092-9") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) Annotation(oboInOwl:hasSynonymType obo:OMO_0003004) oboInOwl:hasRelatedSynonym obo:CL_0000561 "ACs") @@ -9584,7 +10351,9 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000561 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000561 cl:eye_upper_slim) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000561 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000561 "amacrine cell") +SubClassOf(obo:CL_0000561 obo:BFO_0000002) SubClassOf(obo:CL_0000561 obo:CL_0000099) +SubClassOf(obo:CL_0000561 obo:CL_0009004) SubClassOf(obo:CL_0000561 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000966)) SubClassOf(obo:CL_0000561 ObjectSomeValuesFrom(obo:RO_0002120 obo:CL_0000740)) SubClassOf(obo:CL_0000561 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_7742)) @@ -9594,9 +10363,11 @@ SubClassOf(obo:CL_0000561 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_7742 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "GOc:tfm") obo:IAO_0000115 obo:CL_0000562 "An erythrocyte having a nucleus.") AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000562 "RBC") AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000562 "red blood cell") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000562 "ZFA:0009256") AnnotationAssertion(rdfs:label obo:CL_0000562 "nucleate erythrocyte") EquivalentClasses(obo:CL_0000562 ObjectIntersectionOf(obo:CL_0000232 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0002505))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000562 obo:CL_0000232) +SubClassOf(obo:CL_0000562 obo:CL_0002242) SubClassOf(obo:CL_0000562 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002421)) # Class: obo:CL_0000563 (endospore) @@ -9611,12 +10382,20 @@ SubClassOf(obo:CL_0000563 obo:CL_0000520) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "GOC:dsd") Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0721601464") Annotation(oboInOwl:hasDbXref "PMID:12560239") Annotation(oboInOwl:hasDbXref "PMID:15514007") obo:IAO_0000115 obo:CL_0000564 "A promyelocyte committed to the neutrophil lineage. This cell type is GATA-1-positive, C/EBPa-positive, AML-1-positive, MPO-positive, has low expression of PU.1 transcription factor and lacks lactotransferrin expression.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000564 "FMA:84196") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000564 "ZFA:0009257") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000564 "neutrophilic premyelocyte") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000564 "neutrophilic progranulocyte") AnnotationAssertion(rdfs:comment obo:CL_0000564 "These cells are CD11b-negative, CD15-positive, CD16-negative, CD49d-positive, CD68-positive, CD35-negative, and fMLP receptor-negative. They are found in the Band 3 fraction.") AnnotationAssertion(rdfs:label obo:CL_0000564 "neutrophilic promyelocyte") EquivalentClasses(obo:CL_0000564 ObjectIntersectionOf(obo:CL_0000836 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001944) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000005307) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000007857) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000010543) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000014362) ObjectSomeValuesFrom(obo:CL_4030045 obo:PR_000009978) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030223))) +SubClassOf(obo:CL_0000564 obo:CL_0000834) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000564 obo:CL_0000836) +SubClassOf(obo:CL_0000564 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001944)) +SubClassOf(obo:CL_0000564 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000005307)) +SubClassOf(obo:CL_0000564 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000007857)) +SubClassOf(obo:CL_0000564 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000010543)) +SubClassOf(obo:CL_0000564 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000014362)) +SubClassOf(obo:CL_0000564 ObjectSomeValuesFrom(obo:CL_4030045 obo:PR_000009978)) SubClassOf(obo:CL_0000564 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000042)) # Class: obo:CL_0000565 (fat body cell) @@ -9628,12 +10407,17 @@ SubClassOf(obo:CL_0000565 obo:CL_0000325) # Class: obo:CL_0000566 (angioblastic mesenchymal cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:dsd") Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:12768659") obo:IAO_0000115 obo:CL_0000566 "A mesenchymal stem cell capable of developing into blood vessel endothelium.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000566 "ZFA:0009258") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000566 "angioblast") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000566 "chondroplast") AnnotationAssertion(rdfs:comment obo:CL_0000566 "These cells are reportedly CD31-positive, CD34-positive, CD144-positive, CD309-positive, and TAL1-positive.") AnnotationAssertion(rdfs:label obo:CL_0000566 "angioblastic mesenchymal cell") EquivalentClasses(obo:CL_0000566 ObjectIntersectionOf(obo:CL_0000134 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001444) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002112) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000016043))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000566 obo:CL_0000134) +SubClassOf(obo:CL_0000566 obo:CL_0011026) +SubClassOf(obo:CL_0000566 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001444)) +SubClassOf(obo:CL_0000566 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002112)) +SubClassOf(obo:CL_0000566 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000016043)) SubClassOf(obo:CL_0000566 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000134)) # Class: obo:CL_0000567 (polymodal nocireceptor) @@ -9654,16 +10438,20 @@ SubClassOf(obo:CL_0000568 obo:CL_0000165) # Class: obo:CL_0000569 (cardiac mesenchymal cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:18816864") obo:IAO_0000115 obo:CL_0000569 "A mesenchymal cell found in the developing heart and that develops into some part of the heart. These cells derive from intra- and extra-cardiac sources, including the endocardium, epicardium, neural crest, and second heart field.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000569 "ZFA:0009259") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000569 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000569 "cardiac mesenchymal cell") EquivalentClasses(obo:CL_0000569 ObjectIntersectionOf(obo:CL_0008019 ObjectSomeValuesFrom(obo:RO_0002203 obo:CL_0002494))) +SubClassOf(obo:CL_0000569 obo:CL_0008019) SubClassOf(obo:CL_0000569 obo:CL_2000073) +SubClassOf(obo:CL_0000569 ObjectSomeValuesFrom(obo:RO_0002203 obo:CL_0002494)) # Class: obo:CL_0000570 (parafollicular cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0517223651") obo:IAO_0000115 obo:CL_0000570 "A neuroepithelial cells that occurs singly or in small groups, close to the outer follicular borders but within the follicular basement membrane of the thyroid. Expresses a form of the neural cell adhesion molecule (N-CAM) on their surface. Secretes calcitonin, 5-hydroxytryptamine and dopamine.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000570 "FMA:68653") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000570 "SCTID:176770005") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000570 "ZFA:0009260") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000570 "C cell") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:68653") oboInOwl:hasExactSynonym obo:CL_0000570 "C cell of thyroid gland") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:68653") oboInOwl:hasExactSynonym obo:CL_0000570 "clear cell of thyroid gland") @@ -9672,14 +10460,19 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:68653") oboInOwl:hasExact AnnotationAssertion(rdfs:label obo:CL_0000570 "parafollicular cell") EquivalentClasses(obo:CL_0000570 ObjectIntersectionOf(obo:CL_0000710 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001024) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001820) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0014046) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0036161))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000570 obo:CL_0000443) +SubClassOf(obo:CL_0000570 obo:CL_0000458) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000570 obo:CL_0000710) SubClassOf(obo:CL_0000570 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001747)) +SubClassOf(obo:CL_0000570 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001024)) SubClassOf(obo:CL_0000570 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000333)) +SubClassOf(obo:CL_0000570 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0014046)) # Class: obo:CL_0000571 (leucophore) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "SANBI:mhl") obo:IAO_0000115 obo:CL_0000571 "A pigment cell derived from the neural crest. Contains uric acid or other purine crystals deposited in stacks called leucosomes. The crystals reflect light and this gives a white appearance under white light.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000571 "ZFA:0009261") AnnotationAssertion(rdfs:label obo:CL_0000571 "leucophore") +SubClassOf(obo:CL_0000571 obo:BFO_0000002) SubClassOf(obo:CL_0000571 obo:CL_0000147) SubClassOf(obo:CL_0000571 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0005003)) @@ -9696,6 +10489,7 @@ AnnotationAssertion(obo:RO_0002175 obo:CL_0000573 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000573 "BTO:0001036") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000573 "CALOHA:TS-0866") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000573 "FMA:67748") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000573 "ZFA:0009262") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1038/s41598-020-66092-9") oboInOwl:hasRelatedSynonym obo:CL_0000573 "cone") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000573 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000573 core:human_reference_atlas) @@ -9706,7 +10500,9 @@ SubClassOf(obo:CL_0000573 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002672)) # Class: obo:CL_0000574 (erythrophore) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "SANBI:mhl") obo:IAO_0000115 obo:CL_0000574 "A pigment cell derived from the neural crest. Contains pteridine and/or carotenoid pigments in structures called pterinosomes or erythrosomes. This gives an orange to red appearance.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000574 "ZFA:0009263") AnnotationAssertion(rdfs:label obo:CL_0000574 "erythrophore") +SubClassOf(obo:CL_0000574 obo:BFO_0000002) SubClassOf(obo:CL_0000574 obo:CL_0000147) SubClassOf(obo:CL_0000574 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0005004)) @@ -9717,13 +10513,16 @@ AnnotationAssertion(obo:RO_0002175 obo:CL_0000575 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000575 "BTO:0004298") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000575 "CALOHA:TS-0173") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000575 "FMA:70551") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000575 "ZFA:0009264") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:70551") oboInOwl:hasExactSynonym obo:CL_0000575 "epithelial cell of cornea") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000575 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000575 cl:eye_upper_slim) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000575 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000575 "corneal epithelial cell") EquivalentClasses(obo:CL_0000575 ObjectIntersectionOf(obo:CL_0000076 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001772))) +SubClassOf(obo:CL_0000575 obo:CL_0000076) SubClassOf(obo:CL_0000575 obo:CL_0002159) +SubClassOf(obo:CL_0000575 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001772)) # Class: obo:CL_0000576 (monocyte) @@ -9732,6 +10531,7 @@ AnnotationAssertion(obo:RO_0002175 obo:CL_0000576 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000576 "BTO:0000876") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000576 "CALOHA:TS-0638") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000576 "FMA:62864") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000576 "ZFA:0009265") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000576 cl:blood_and_immune_upper_slim) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000576 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000576 cl:general_cell_types_upper_slim) @@ -9741,7 +10541,11 @@ AnnotationAssertion(rdfs:label obo:CL_0000576 "monocyte") EquivalentClasses(obo:CL_0000576 ObjectIntersectionOf(obo:CL_0000766 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001407) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030225) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030316) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0043011))) SubClassOf(obo:CL_0000576 obo:CL_0000113) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000576 obo:CL_0000766) +SubClassOf(obo:CL_0000576 obo:CL_0011026) SubClassOf(obo:CL_0000576 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000559)) +SubClassOf(obo:CL_0000576 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030225)) +SubClassOf(obo:CL_0000576 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030316)) +SubClassOf(obo:CL_0000576 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0043011)) # Class: obo:CL_0000577 (type EC enteroendocrine cell) @@ -9760,6 +10564,7 @@ SubClassOf(obo:CL_0000577 obo:CL_0000164) SubClassOf(obo:CL_0000577 obo:CL_0000166) SubClassOf(obo:CL_0000577 obo:CL_0000458) SubClassOf(obo:CL_0000577 obo:CL_0000506) +SubClassOf(obo:CL_0000577 obo:CL_0002251) SubClassOf(obo:CL_0000577 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004786)) # Class: obo:CL_0000578 (experimentally modified cell in vitro) @@ -9772,7 +10577,7 @@ SubClassOf(obo:CL_0000578 obo:CL_0001034) # Class: obo:CL_0000579 (border follicle cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBbt:00004905") obo:IAO_0000115 obo:CL_0000579 "A follicle cell that migrates from the anterior pole of the insect egg chamber to the anterior of the oocyte where they participate in the formation of the micropyle.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000579 "FBbt:00004905") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000579 "FBbt:00004905") AnnotationAssertion(rdfs:label obo:CL_0000579 "border follicle cell") SubClassOf(obo:CL_0000579 obo:CL_0000477) @@ -9781,33 +10586,76 @@ SubClassOf(obo:CL_0000579 obo:CL_0000477) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "GOC:dsd") Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0721601464") Annotation(oboInOwl:hasDbXref "PMID:10618520") Annotation(oboInOwl:hasDbXref "PMID:12560239") Annotation(oboInOwl:hasDbXref "PMID:15514007") Annotation(oboInOwl:hasDbXref "http://www.cap.org") obo:IAO_0000115 obo:CL_0000580 "A neutrophil precursor in the granulocytic series, being a cell intermediate in development between a promyelocyte and a metamyelocyte; in this stage, production of primary granules is complete and neutrophil-specific granules has started. No nucleolus is present. This cell type is CD13-positive, CD16-negative, integrin alpha-M-positive, CD15-positive, CD33-positive, CD24-positive, C/EBP-a-positive, C/EBPe-positive, PU.1-positive, lactotransferrin-positive, myeloperoxidase-positive and NGAL-positive.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000580 "BTO:0003455") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000580 "FMA:83540") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000580 "ZFA:0009266") AnnotationAssertion(rdfs:comment obo:CL_0000580 "These cells are also CD15-positive, CD35-negative, CD49d-positive, and fMLP receptor-negative. They are found in the Band 2 fraction.") AnnotationAssertion(rdfs:label obo:CL_0000580 "neutrophilic myelocyte") EquivalentClasses(obo:CL_0000580 ObjectIntersectionOf(obo:CL_0000776 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017502) ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0042582) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001944) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000005307) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000005310) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000009725) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000009978) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000010543) ObjectSomeValuesFrom(obo:CL_4030045 obo:GO_0070820) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001483) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001012) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001456) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001892) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001932) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002031))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000580 obo:CL_0000776) +SubClassOf(obo:CL_0000580 obo:CL_0002087) SubClassOf(obo:CL_0000580 obo:CL_0002193) -SubClassOf(obo:CL_0000580 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000564)) +SubClassOf(obo:CL_0000580 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017502)) +SubClassOf(obo:CL_0000580 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0042582)) +SubClassOf(obo:CL_0000580 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001944)) +SubClassOf(obo:CL_0000580 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000005307)) +SubClassOf(obo:CL_0000580 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000005310)) +SubClassOf(obo:CL_0000580 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000009725)) +SubClassOf(obo:CL_0000580 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000009978)) +SubClassOf(obo:CL_0000580 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000010543)) +SubClassOf(obo:CL_0000580 ObjectSomeValuesFrom(obo:CL_4030045 obo:GO_0070820)) +SubClassOf(obo:CL_0000580 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001483)) +SubClassOf(obo:CL_0000580 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001456)) +SubClassOf(obo:CL_0000580 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001892)) +SubClassOf(obo:CL_0000580 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001932)) +SubClassOf(obo:CL_0000580 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002031)) # Class: obo:CL_0000581 (peritoneal macrophage) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D017737") Annotation(oboInOwl:hasDbXref "PMID:15771589") Annotation(oboInOwl:hasDbXref "PMID:19201820") obo:IAO_0000115 obo:CL_0000581 "A macrophage resident in the peritoneum under non-inflammatory conditions. Markers include F4/80-high, CD11b-high, CD68-positive, SIGNR1-positive, CD115-high, MHC-II-negative, and Dectin-1-positive.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000581 "BTO:0001034") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000581 "FMA:83025") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000581 "ZFA:0009267") AnnotationAssertion(rdfs:comment obo:CL_0000581 "Markers: Mouse: F4/80-high, CD11b-high, CD68+, SIGNR1+, Dectin-1+.") AnnotationAssertion(rdfs:label obo:CL_0000581 "peritoneal macrophage") EquivalentClasses(obo:CL_0000581 ObjectIntersectionOf(obo:CL_0000864 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0042613) ObjectSomeValuesFrom(obo:RO_0001025 obo:UBERON_0001179) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001807) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002064) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000006172) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0042742) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001012) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001813) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000002062))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000581 obo:CL_0000864) +SubClassOf(obo:CL_0000581 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0042613)) +SubClassOf(obo:CL_0000581 ObjectSomeValuesFrom(obo:RO_0001025 obo:UBERON_0001179)) +SubClassOf(obo:CL_0000581 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001807)) +SubClassOf(obo:CL_0000581 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002064)) +SubClassOf(obo:CL_0000581 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000006172)) +SubClassOf(obo:CL_0000581 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0042742)) +SubClassOf(obo:CL_0000581 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001012)) +SubClassOf(obo:CL_0000581 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001813)) +SubClassOf(obo:CL_0000581 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000002062)) # Class: obo:CL_0000582 (neutrophilic metamyelocyte) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "GOC:dsd") Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0721601464") Annotation(oboInOwl:hasDbXref "PMID:10618520") Annotation(oboInOwl:hasDbXref "PMID:12560239") Annotation(oboInOwl:hasDbXref "PMID:15514007") Annotation(oboInOwl:hasDbXref "http://www.cap.org") obo:IAO_0000115 obo:CL_0000582 "A neutrophil precursor in the granulocytic series, being a cell intermediate in development between a myelocyte and the band form neutrophil. The protein synthesis seen in earlier stages decreases or stops; the nucleus becomes indented where the indentation is smaller than half the distance to the farthest nuclear margin; chromatin becomes coarse and clumped; specific granules predominate while primary granules are rare; and the cytoplasm becomes amphophilic like that of a mature granulocyte. This cell type is integrin alpha-M-positive, CD13-negative, CD15-positive, CD16-positive, CD33-positive, CD24-positive, fMLP receptor-negative and has expression of C/EBP-a, C/EBP-e, PU.1 transcription factor, lactotransferrin, myeloperoxidase and neutrophil gelatinase associated lipocalin.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000582 "FMA:84197") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000582 "ZFA:0009268") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000582 "juvenile neutrophil") AnnotationAssertion(rdfs:comment obo:CL_0000582 "These cells are also CD35-negative, CD49d-positive, and fMLP receptor-negative. They are found in the Band 2 fraction.") AnnotationAssertion(rdfs:label obo:CL_0000582 "neutrophilic metamyelocyte") EquivalentClasses(obo:CL_0000582 ObjectIntersectionOf(obo:CL_0000776 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017502) ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017507) ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0000792) ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0042582) ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0070820) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001944) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000005307) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000005310) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000009725) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000009978) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000010543) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001580) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001012) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001456) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001483) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001892) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001932) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002031))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000582 obo:CL_0000776) SubClassOf(obo:CL_0000582 obo:CL_0002192) +SubClassOf(obo:CL_0000582 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017502)) +SubClassOf(obo:CL_0000582 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017507)) +SubClassOf(obo:CL_0000582 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0000792)) +SubClassOf(obo:CL_0000582 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0042582)) +SubClassOf(obo:CL_0000582 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0070820)) +SubClassOf(obo:CL_0000582 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001944)) +SubClassOf(obo:CL_0000582 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000005307)) +SubClassOf(obo:CL_0000582 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000005310)) +SubClassOf(obo:CL_0000582 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000009725)) +SubClassOf(obo:CL_0000582 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000009978)) +SubClassOf(obo:CL_0000582 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000010543)) +SubClassOf(obo:CL_0000582 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001580)) +SubClassOf(obo:CL_0000582 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001456)) +SubClassOf(obo:CL_0000582 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001483)) +SubClassOf(obo:CL_0000582 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001892)) +SubClassOf(obo:CL_0000582 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001932)) +SubClassOf(obo:CL_0000582 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002031)) SubClassOf(obo:CL_0000582 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000580)) # Class: obo:CL_0000583 (alveolar macrophage) @@ -9826,6 +10674,15 @@ AnnotationAssertion(rdfs:label obo:CL_0000583 "alveolar macrophage") EquivalentClasses(obo:CL_0000583 ObjectIntersectionOf(obo:CL_0000864 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001206) ObjectSomeValuesFrom(obo:RO_0001025 obo:UBERON_0002299) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001013) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001807) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001813) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001931) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002064) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002972) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0019882) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001012))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000583 obo:CL_0000864) SubClassOf(obo:CL_0000583 obo:CL_1001603) +SubClassOf(obo:CL_0000583 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001206)) +SubClassOf(obo:CL_0000583 ObjectSomeValuesFrom(obo:RO_0001025 obo:UBERON_0002299)) +SubClassOf(obo:CL_0000583 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001013)) +SubClassOf(obo:CL_0000583 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001807)) +SubClassOf(obo:CL_0000583 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001813)) +SubClassOf(obo:CL_0000583 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001931)) +SubClassOf(obo:CL_0000583 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002064)) +SubClassOf(obo:CL_0000583 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002972)) +SubClassOf(obo:CL_0000583 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001012)) # Class: obo:CL_0000584 (enterocyte) @@ -9834,6 +10691,7 @@ AnnotationAssertion(obo:RO_0002175 obo:CL_0000584 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000584 "BTO:0000398") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000584 "FMA:62122") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000584 "MESH:D020895") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000584 "ZFA:0009269") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:33290721") Annotation(oboInOwl:hasDbXref "https://orcid.org/0000-0001-9610-7627") oboInOwl:hasNarrowSynonym obo:CL_0000584 "differentiated enterocyte") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:33290721") Annotation(oboInOwl:hasDbXref "https://orcid.org/0000-0001-9610-7627") oboInOwl:hasNarrowSynonym obo:CL_0000584 "mature enterocyte") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000584 cl:cellxgene_subset) @@ -9873,9 +10731,11 @@ SubClassOf(obo:CL_0000587 obo:CL_0000205) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") obo:IAO_0000115 obo:CL_0000588 "A specialized osteoclast associated with the absorption and removal of cementum.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000588 "BTO:0002516") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000588 "FMA:83027") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000588 "ZFA:0009270") AnnotationAssertion(rdfs:label obo:CL_0000588 "odontoclast") EquivalentClasses(obo:CL_0000588 ObjectIntersectionOf(obo:CL_0000092 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0042483))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000588 obo:CL_0000092) +SubClassOf(obo:CL_0000588 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0042483)) # Class: obo:CL_0000589 (cochlear inner hair cell) @@ -9895,7 +10755,6 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000590 "small lutein cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000590 "theca lutein cell") AnnotationAssertion(rdfs:label obo:CL_0000590 "small luteal cell") SubClassOf(obo:CL_0000590 obo:CL_0000175) -SubClassOf(obo:CL_0000590 obo:CL_0000179) SubClassOf(obo:CL_0000590 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000503)) # Class: obo:CL_0000591 (warmth sensing thermoreceptor cell) @@ -9918,17 +10777,21 @@ SubClassOf(obo:CL_0000592 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000501)) # Class: obo:CL_0000593 (androgen secreting cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0000593 "A steroid hormone secreting cell that secretes androgen.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000593 "ZFA:0009271") AnnotationAssertion(rdfs:label obo:CL_0000593 "androgen secreting cell") EquivalentClasses(obo:CL_0000593 ObjectIntersectionOf(obo:CL_0000151 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0035935))) +SubClassOf(obo:CL_0000593 obo:CL_0000174) +SubClassOf(obo:CL_0000593 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0035935)) # Class: obo:CL_0000594 (skeletal muscle satellite cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "MESH:D032496") Annotation(oboInOwl:hasDbXref "PMID:21849021") Annotation(oboInOwl:hasDbXref "PMID:23303905") obo:IAO_0000115 obo:CL_0000594 "An elongated, spindle-shaped, cell that is located between the basal lamina and the plasmalemma of a muscle fiber. These cells are mostly quiescent, but upon activation they divide to produce cells that generate new muscle fibers.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000594 "ZFA:0009272") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000594 cl:cellxgene_subset) AnnotationAssertion(rdfs:comment obo:CL_0000594 "Skeletal muscle satellite cells are not traditionally referred to as myoblasts. They are a heterogeneous population whose division, following activiation, contributes to the formation of skeletal muscle fibers and to maintenance of the skeletal muscle statelite cell population.") AnnotationAssertion(rdfs:label obo:CL_0000594 "skeletal muscle satellite cell") +SubClassOf(obo:CL_0000594 obo:CL_0000188) SubClassOf(obo:CL_0000594 obo:CL_0000680) -SubClassOf(obo:CL_0000594 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001134)) # Class: obo:CL_0000595 (enucleate erythrocyte) @@ -9938,6 +10801,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl AnnotationAssertion(oboInOwl:inSubset obo:CL_0000595 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000595 "enucleate erythrocyte") EquivalentClasses(obo:CL_0000595 ObjectIntersectionOf(obo:CL_0000232 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001405))) +SubClassOf(obo:CL_0000595 obo:CL_0000225) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000595 obo:CL_0000232) SubClassOf(obo:CL_0000595 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002422)) @@ -9963,12 +10827,15 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000598 "BTO:0003102") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000598 "FMA:67310") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000598 "FMA:86775") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000598 "NIFSTD:sao862606388") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000598 "ZFA:0009273") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000598 "projection neuron") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000598 "pyramidal cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000598 cl:BDS_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000598 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000598 "pyramidal neuron") EquivalentClasses(obo:CL_0000598 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070015))) +SubClassOf(obo:CL_0000598 obo:CL_0000104) +SubClassOf(obo:CL_0000598 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070015)) # Class: obo:CL_0000599 (conidium) @@ -9991,12 +10858,12 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D018072") obo:IAO_000011 AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000601 "BTO:0003666") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000601 "FMA:62366") AnnotationAssertion(rdfs:label obo:CL_0000601 "cochlear outer hair cell") -SubClassOf(obo:CL_0000601 obo:CL_0000202) -SubClassOf(obo:CL_0000601 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002227)) +SubClassOf(obo:CL_0000601 obo:CL_4023120) # Class: obo:CL_0000602 (pressoreceptor cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D011311") obo:IAO_0000115 obo:CL_0000602 "A receptor in the vascular system, particularly the aorta and carotid sinus, which is sensitive to stretch of the vessel walls.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000602 "ZFA:0009274") AnnotationAssertion(rdfs:label obo:CL_0000602 "pressoreceptor cell") SubClassOf(obo:CL_0000602 obo:CL_1000082) @@ -10014,6 +10881,7 @@ AnnotationAssertion(obo:RO_0002175 obo:CL_0000604 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000604 "BTO:0001024") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000604 "CALOHA:TS-0870") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000604 "FMA:67747") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000604 "ZFA:0009275") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1038/s41598-020-66092-9") oboInOwl:hasRelatedSynonym obo:CL_0000604 "rod") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000604 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000604 core:human_reference_atlas) @@ -10067,6 +10935,7 @@ AnnotationAssertion(owl:deprecated obo:CL_0000610 "true"^^xsd:boolean) # Class: obo:CL_0000611 (eosinophil progenitor cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0000611 "Any granulocytopoietic cell that has part some transcription factor PU.1 and has part some CCAAT/enhancer-binding protein alpha and has part some erythroid transcription factor and lacks plasma membrane part some CD19 molecule and lacks plasma membrane part some CD4 molecule and lacks plasma membrane part some integrin alpha-M and lacks plasma membrane part some CD3 epsilon and lacks plasma membrane part some neural cell adhesion molecule 1 and lacks plasma membrane part some CD2 molecule and lacks plasma membrane part some T-cell surface glycoprotein CD8 alpha chain and lacks plasma membrane part some membrane-spanning 4-domains subfamily A member 1 and lacks plasma membrane part some T-cell surface glycoprotein CD5 and lacks plasma membrane part some CD14 molecule and lacks plasma membrane part some lymphocyte antigen 6G and lacks plasma membrane part some lymphocyte antigen 76 (mouse) and has plasma membrane part some CD34 molecule and has plasma membrane part some ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 and has plasma membrane part some interleukin-3 receptor class 2 alpha chain and has plasma membrane part some interleukin-5 receptor subunit alpha and has plasma membrane part some mast/stem cell growth factor receptor and is capable of some eosinophil differentiation.") AnnotationAssertion(Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_0000611 "CFU-Eo") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMCID:PMC2212039") Annotation(oboInOwl:hasDbXref "PMCID:PMC2626675") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_0000611 "EoP") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000611 "colony forming unit eosinophil") @@ -10074,8 +10943,30 @@ AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000611 "eosinophil stem c AnnotationAssertion(rdfs:comment obo:CL_0000611 "These cells are CD34-positive, CD45RA-negative, CD71-negative, and lineage-negative (CD2, CD3 epsilon, CD4, CD5, CD8a, CD14, CD19, CD20, integrin alpha-M, NCAM-1, SCA-1, Ly6G, Ly76).") AnnotationAssertion(rdfs:label obo:CL_0000611 "eosinophil progenitor cell") EquivalentClasses(obo:CL_0000611 ObjectIntersectionOf(obo:CL_0002191 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001944) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000005307) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000007857) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001024) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001083) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001839) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001889) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002978) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002981) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001865) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001867) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002065) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030222))) +SubClassOf(obo:CL_0000611 obo:CL_0000763) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000611 obo:CL_0002191) +SubClassOf(obo:CL_0000611 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001944)) +SubClassOf(obo:CL_0000611 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000005307)) +SubClassOf(obo:CL_0000611 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000007857)) +SubClassOf(obo:CL_0000611 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002)) +SubClassOf(obo:CL_0000611 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004)) +SubClassOf(obo:CL_0000611 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012)) +SubClassOf(obo:CL_0000611 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020)) +SubClassOf(obo:CL_0000611 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001024)) +SubClassOf(obo:CL_0000611 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001083)) +SubClassOf(obo:CL_0000611 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084)) +SubClassOf(obo:CL_0000611 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289)) +SubClassOf(obo:CL_0000611 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001839)) +SubClassOf(obo:CL_0000611 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001889)) +SubClassOf(obo:CL_0000611 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002978)) +SubClassOf(obo:CL_0000611 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002981)) +SubClassOf(obo:CL_0000611 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003)) +SubClassOf(obo:CL_0000611 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408)) +SubClassOf(obo:CL_0000611 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001865)) +SubClassOf(obo:CL_0000611 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001867)) +SubClassOf(obo:CL_0000611 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002065)) SubClassOf(obo:CL_0000611 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000557)) +SubClassOf(obo:CL_0000611 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030222)) # Class: obo:CL_0000612 (eosinophilic myelocyte) @@ -10085,7 +10976,15 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000612 "FMA:83542") AnnotationAssertion(rdfs:label obo:CL_0000612 "eosinophilic myelocyte") EquivalentClasses(obo:CL_0000612 ObjectIntersectionOf(obo:CL_0000772 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0042582) ObjectSomeValuesFrom(obo:CL_4030045 obo:GO_0070820) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001483) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001012) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001456) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001892) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001932) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002031))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000612 obo:CL_0000772) +SubClassOf(obo:CL_0000612 obo:CL_0002087) SubClassOf(obo:CL_0000612 obo:CL_0002193) +SubClassOf(obo:CL_0000612 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0042582)) +SubClassOf(obo:CL_0000612 ObjectSomeValuesFrom(obo:CL_4030045 obo:GO_0070820)) +SubClassOf(obo:CL_0000612 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001483)) +SubClassOf(obo:CL_0000612 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001456)) +SubClassOf(obo:CL_0000612 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001892)) +SubClassOf(obo:CL_0000612 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001932)) +SubClassOf(obo:CL_0000612 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002031)) # Class: obo:CL_0000613 (basophil progenitor cell) @@ -10097,8 +10996,28 @@ AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000613 "colony forming un AnnotationAssertion(rdfs:comment obo:CL_0000613 "BaP are also CD13-low and integrin beta-7-low. They are lin-negative (CD2, CD3e, CD4, CD5, CD8, CD11b, CD14, CD19, CD20, ly6g, ly76, and NCAM-1). They also lack expression of mast cell protease 1 (MCP-1) and microphthalmia-associated transcription factor (mitf).") AnnotationAssertion(rdfs:label obo:CL_0000613 "basophil progenitor cell") EquivalentClasses(obo:CL_0000613 ObjectIntersectionOf(obo:CL_0002191 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000005307) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000007857) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000007858) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001024) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001083) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001839) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001889) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002065) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002978) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002981) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030221) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000007431) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000016401))) +SubClassOf(obo:CL_0000613 obo:CL_0000763) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000613 obo:CL_0002191) +SubClassOf(obo:CL_0000613 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000005307)) +SubClassOf(obo:CL_0000613 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000007857)) +SubClassOf(obo:CL_0000613 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000007858)) +SubClassOf(obo:CL_0000613 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002)) +SubClassOf(obo:CL_0000613 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004)) +SubClassOf(obo:CL_0000613 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012)) +SubClassOf(obo:CL_0000613 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020)) +SubClassOf(obo:CL_0000613 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001024)) +SubClassOf(obo:CL_0000613 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001083)) +SubClassOf(obo:CL_0000613 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084)) +SubClassOf(obo:CL_0000613 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289)) +SubClassOf(obo:CL_0000613 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001839)) +SubClassOf(obo:CL_0000613 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001889)) +SubClassOf(obo:CL_0000613 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002065)) +SubClassOf(obo:CL_0000613 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002978)) +SubClassOf(obo:CL_0000613 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002981)) SubClassOf(obo:CL_0000613 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002028)) +SubClassOf(obo:CL_0000613 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030221)) +SubClassOf(obo:CL_0000613 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000007431)) +SubClassOf(obo:CL_0000613 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000016401)) # Class: obo:CL_0000614 (basophilic myelocyte) @@ -10108,7 +11027,15 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000614 "FMA:83543") AnnotationAssertion(rdfs:label obo:CL_0000614 "basophilic myelocyte") EquivalentClasses(obo:CL_0000614 ObjectIntersectionOf(obo:CL_0000768 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0042582) ObjectSomeValuesFrom(obo:CL_4030045 obo:GO_0005730) ObjectSomeValuesFrom(obo:CL_4030045 obo:GO_0070820) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001483) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001012) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001456) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001892) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001932) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002031))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000614 obo:CL_0000768) -SubClassOf(obo:CL_0000614 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000830)) +SubClassOf(obo:CL_0000614 obo:CL_0002087) +SubClassOf(obo:CL_0000614 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0042582)) +SubClassOf(obo:CL_0000614 ObjectSomeValuesFrom(obo:CL_4030045 obo:GO_0005730)) +SubClassOf(obo:CL_0000614 ObjectSomeValuesFrom(obo:CL_4030045 obo:GO_0070820)) +SubClassOf(obo:CL_0000614 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001483)) +SubClassOf(obo:CL_0000614 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001456)) +SubClassOf(obo:CL_0000614 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001892)) +SubClassOf(obo:CL_0000614 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001932)) +SubClassOf(obo:CL_0000614 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002031)) # Class: obo:CL_0000615 (basidiospore) @@ -10127,15 +11054,18 @@ AnnotationAssertion(owl:deprecated obo:CL_0000616 "true"^^xsd:boolean) # Class: obo:CL_0000617 (GABAergic neuron) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0000617 "A neuron that uses GABA as a vesicular neurotransmitter") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000617 "FBbt:00007228") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000617 "FBbt:00007228") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000617 "FMA:84788") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000617 "MESH:D059330") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000617 "WBbt:0005190") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000617 "ZFA:0009276") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000617 "GABA-ergic neuron") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000617 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000617 "GABAergic neuron") EquivalentClasses(obo:CL_0000617 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061534))) +SubClassOf(obo:CL_0000617 obo:CL_0000151) SubClassOf(obo:CL_0000617 obo:CL_0000540) +SubClassOf(obo:CL_0000617 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061534)) # Class: obo:CL_0000618 (sheath cell) @@ -10159,14 +11089,14 @@ AnnotationAssertion(owl:deprecated obo:CL_0000620 "true"^^xsd:boolean) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:22274696") obo:IAO_0000115 obo:CL_0000621 "A myoblast that is committed to a myotube-specific program of differentiation but not yet fused. It undergoes very limited additional proliferation. After fusion, it will take on a muscle identity specified by a `muscle founder cell` (CL:0008006).") AnnotationAssertion(rdfs:label obo:CL_0000621 "fusion competent myoblast") -SubClassOf(obo:CL_0000621 obo:CL_0000056) -SubClassOf(obo:CL_0000621 ObjectSomeValuesFrom(obo:RO_0002203 obo:CL_0008003)) +SubClassOf(obo:CL_0000621 obo:CL_0008018) # Class: obo:CL_0000622 (acinar cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "http://www.copewithcytokines.de") obo:IAO_0000115 obo:CL_0000622 "A secretory cell that is grouped together with other cells of the same type to form grape shaped clusters known as acini (singular acinus).") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000622 "FMA:83625") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000622 "MESH:D061354") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000622 "ZFA:0009277") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000622 "acinic cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000622 "acinous cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000622 cl:cellxgene_subset) @@ -10188,13 +11118,19 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000623 "FMA:63147") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000623 "FMA:83601") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000623 "MESH:D007694") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000623 "VHOG:0001697") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000623 "ZFA:0009278") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000623 "NK cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000623 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000623 cl:general_cell_types_upper_slim) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000623 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000623 "natural killer cell") EquivalentClasses(obo:CL_0000623 ObjectIntersectionOf(obo:CL_0001067 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001889) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002228) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050776))) +SubClassOf(obo:CL_0000623 obo:CL_0001067) +SubClassOf(obo:CL_0000623 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289)) +SubClassOf(obo:CL_0000623 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001889)) SubClassOf(obo:CL_0000623 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000825)) +SubClassOf(obo:CL_0000623 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002228)) +SubClassOf(obo:CL_0000623 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050776)) # Class: obo:CL_0000624 (CD4-positive, alpha-beta T cell) @@ -10208,6 +11144,8 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000624 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000624 "CD4-positive, alpha-beta T cell") EquivalentClasses(obo:CL_0000624 ObjectIntersectionOf(obo:CL_0000791 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000025402) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001004))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000624 obo:CL_0000791) +SubClassOf(obo:CL_0000624 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000025402)) +SubClassOf(obo:CL_0000624 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001004)) DisjointClasses(obo:CL_0000624 obo:CL_0000625) # Class: obo:CL_0000625 (CD8-positive, alpha-beta T cell) @@ -10222,15 +11160,21 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000625 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000625 "CD8-positive, alpha-beta T cell") EquivalentClasses(obo:CL_0000625 ObjectIntersectionOf(obo:CL_0000791 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000025402))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000625 obo:CL_0000791) +SubClassOf(obo:CL_0000625 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004)) +SubClassOf(obo:CL_0000625 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000025402)) # Class: obo:CL_0000626 (olfactory granule cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:mah") Annotation(oboInOwl:hasDbXref "doi:10.1038/s41598-018-27692-8") obo:IAO_0000115 obo:CL_0000626 "A granule cell that has a soma located in an olfactory bulb granule cell layer. An olfactory granule cell is an interneuron that lacks an axon, makes reciprocal dendro-dendritic synapses with mitral cells and tufted cells and is involved in the fine spatio-temporal tuning of the responses of these principal olfactory bulb neurons to odors.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000626 "ZFA:0001694") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1038/s41598-018-27692-8") oboInOwl:hasExactSynonym obo:CL_0000626 "olfactory bulb granule cell") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1038/s41598-018-27692-8") rdfs:comment obo:CL_0000626 "Granule cells are the most abundant neuronal population in the olfactory bulb and are continuously renewed throughout life.") AnnotationAssertion(rdfs:label obo:CL_0000626 "olfactory granule cell") EquivalentClasses(obo:CL_0000626 ObjectIntersectionOf(obo:CL_0000120 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0005378))) -SubClassOf(obo:CL_0000626 obo:CL_0000099) +SubClassOf(obo:CL_0000626 obo:CL_0000120) +SubClassOf(obo:CL_0000626 obo:CL_0012001) +SubClassOf(obo:CL_0000626 obo:CL_1001434) +SubClassOf(obo:CL_0000626 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0005378)) SubClassOf(obo:CL_0000626 ObjectSomeValuesFrom(obo:RO_0002103 obo:CL_1001502)) SubClassOf(obo:CL_0000626 ObjectSomeValuesFrom(obo:RO_0002103 obo:CL_1001503)) SubClassOf(obo:CL_0000626 ObjectSomeValuesFrom(obo:RO_0002120 obo:CL_1001502)) @@ -10261,6 +11205,7 @@ SubClassOf(obo:CL_0000629 obo:CL_0000325) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FB:ma") Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0000630 "A cell whose primary function is to support other cell types.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000630 "BTO:0002315") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000630 "ZFA:0009387") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000630 "supportive cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000630 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000630 "supporting cell") @@ -10279,6 +11224,7 @@ AnnotationAssertion(obo:RO_0002175 obo:CL_0000632 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000632 "BTO:0002741") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000632 "CALOHA:TS-0452") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000632 "FMA:67763") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000632 "ZFA:0009279") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000632 "Ito cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000632 "hepatic perisinusoidal cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000632 "perisinusoidal cell") @@ -10292,7 +11238,8 @@ AnnotationAssertion(rdfs:label obo:CL_0000632 "hepatic stellate cell") EquivalentClasses(obo:CL_0000632 ObjectIntersectionOf(obo:CL_0002320 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002107) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000007939))) SubClassOf(obo:CL_0000632 obo:CL_0000057) SubClassOf(obo:CL_0000632 obo:CL_0000327) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000632 obo:CL_0002320) +SubClassOf(obo:CL_0000632 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002107)) +SubClassOf(obo:CL_0000632 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000007939)) # Class: obo:CL_0000633 (Hensen cell) @@ -10327,6 +11274,7 @@ SubClassOf(obo:CL_0000635 obo:CL_0002165) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:NV") Annotation(oboInOwl:hasDbXref "PMID:21911394") obo:IAO_0000115 obo:CL_0000636 "Astrocyte-like radial glial cell that extends vertically throughout the retina, with the nucleus are usually in the middle of the inner nuclear layer.") AnnotationAssertion(obo:RO_0002175 obo:CL_0000636 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000636 "BTO:0003064") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000636 "ZFA:0009280") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.21769/BioProtoc.4179") Annotation(oboInOwl:hasSynonymType core:MISSPELLING) oboInOwl:hasExactSynonym obo:CL_0000636 "Muller cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000636 "Muller glia") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000636 "Müller cell") @@ -10345,7 +11293,10 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000637 "FMA:83089") AnnotationAssertion(rdfs:label obo:CL_0000637 "chromophil cell of anterior pituitary gland") EquivalentClasses(obo:CL_0000637 ObjectIntersectionOf(obo:CL_0000166 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002196))) SubClassOf(obo:CL_0000637 obo:CL_0000150) -SubClassOf(obo:CL_0000637 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030072)) +SubClassOf(obo:CL_0000637 obo:CL_0000166) +SubClassOf(obo:CL_0000637 obo:CL_0000167) +SubClassOf(obo:CL_0000637 obo:CL_2000004) +SubClassOf(obo:CL_0000637 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002196)) # Class: obo:CL_0000638 (acidophil cell of pars distalis of adenohypophysis) @@ -10386,6 +11337,7 @@ SubClassOf(obo:CL_0000641 obo:CL_0000163) # Class: obo:CL_0000642 (folliculostellate cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "JB:jb") Annotation(oboInOwl:hasDbXref "PMID:10495875") Annotation(oboInOwl:hasDbXref "PMID:15961560") Annotation(oboInOwl:hasDbXref "doi:10.23937/2572-407X.1510006") obo:IAO_0000115 obo:CL_0000642 "An agranular supporting cell of the anterior pituitary (adenohypophysis) that is characterized by a star-like morphology and ability to form follicles. Folliculostellate cells communicate with each other and with endocrine cells via gap junctions.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000642 "ZFA:0009281") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.23937/2572-407X.1510006") oboInOwl:hasExactSynonym obo:CL_0000642 "folliculo-stellate cell") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34734454") oboInOwl:hasExactSynonym obo:CL_0000642 "pituitary folliculostellate cell") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34734454") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_0000642 "FS cell") @@ -10395,6 +11347,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:18287078") Annotation(ob AnnotationAssertion(rdfs:label obo:CL_0000642 "folliculostellate cell") SubClassOf(obo:CL_0000642 obo:CL_0000512) SubClassOf(obo:CL_0000642 obo:CL_0000630) +SubClassOf(obo:CL_0000642 obo:CL_2000004) SubClassOf(obo:CL_0000642 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002196)) # Class: obo:CL_0000643 (obo:CL_0000643) @@ -10408,6 +11361,7 @@ AnnotationAssertion(owl:deprecated obo:CL_0000643 "true"^^xsd:boolean) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "http://www.neurolex.org/wiki/Category:Bergmann_Glial_Cell") obo:IAO_0000115 obo:CL_0000644 "Type of radial astrocyte in the cerebellar cortex that have their cell bodies in the Purkinje cell layer and processes that extend into the molecular layer, terminating with bulbous endfeet at the pial surface. Bergmann glia express high densities of glutamate transporters that limit diffusion of the neurotransmitter glutamate during its release from synaptic terminals. Besides their role in early development of the cerebellum, Bergmann glia are also required for the pruning or addition of synapses.") AnnotationAssertion(obo:RO_0002175 obo:CL_0000644 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000644 "FMA:54559") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000644 "ZFA:0009282") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000644 "Bergmann astrocyte") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000644 "Bergmann glial cell of cerebellum") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000644 cl:cellxgene_subset) @@ -10421,7 +11375,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ISBN:0412046911") Annotation( AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000645 "BTO:0003793") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000645 "FMA:83503") AnnotationAssertion(rdfs:label obo:CL_0000645 "pituicyte") -SubClassOf(obo:CL_0000645 obo:CL_0000127) +SubClassOf(obo:CL_0000645 obo:CL_0012000) +SubClassOf(obo:CL_0000645 obo:CL_2000004) SubClassOf(obo:CL_0000645 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002198)) # Class: obo:CL_0000646 (basal cell) @@ -10450,7 +11405,10 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000647 cl:blood_and_immune_upper_s AnnotationAssertion(rdfs:comment obo:CL_0000647 "Role or process: Chronic infection, granulomatous inflammation. Consider also megakaryocyte (CL:0000556) as sometimes multinucleated giant cell is used to refer to this.") AnnotationAssertion(rdfs:label obo:CL_0000647 "multinucleated giant cell") EquivalentClasses(obo:CL_0000647 ObjectIntersectionOf(obo:CL_0000766 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001908) ObjectSomeValuesFrom(obo:RO_0000056 obo:GO_0002432) ObjectSomeValuesFrom(obo:RO_0000056 obo:GO_0002544))) +SubClassOf(obo:CL_0000647 obo:CL_0000228) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000647 obo:CL_0000766) +SubClassOf(obo:CL_0000647 ObjectSomeValuesFrom(obo:RO_0000056 obo:GO_0002432)) +SubClassOf(obo:CL_0000647 ObjectSomeValuesFrom(obo:RO_0000056 obo:GO_0002544)) SubClassOf(obo:CL_0000647 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000235)) # Class: obo:CL_0000648 (kidney granular cell) @@ -10459,13 +11417,16 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:cvs") Annotation(oboInOwl AnnotationAssertion(obo:RO_0002175 obo:CL_0000648 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000648 "juxtaglomerular cell") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000648 "FMA:84138") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000648 "ZFA:0005238") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000648 "JG cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000648 "renin secreting cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000648 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000648 "kidney granular cell") EquivalentClasses(obo:CL_0000648 ObjectIntersectionOf(obo:CL_0000151 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002113) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002001))) +SubClassOf(obo:CL_0000648 obo:CL_0000154) SubClassOf(obo:CL_0000648 obo:CL_0000192) -SubClassOf(obo:CL_0000648 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002303)) +SubClassOf(obo:CL_0000648 obo:CL_1000618) +SubClassOf(obo:CL_0000648 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002001)) # Class: obo:CL_0000649 (prickle cell) @@ -10486,10 +11447,12 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000650 "BTO:0000853") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000650 "CALOHA:TS-0617") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000650 "FMA:70972") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000650 "MESH:D050527") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000650 "ZFA:0009283") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000650 "kidney mesangial cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000650 cl:cellxgene_subset) AnnotationAssertion(rdfs:comment obo:CL_0000650 "Do all of these cells really develop from some mesenchymal stem cell?") AnnotationAssertion(rdfs:label obo:CL_0000650 "mesangial cell") +SubClassOf(obo:CL_0000650 obo:BFO_0000002) SubClassOf(obo:CL_0000650 obo:CL_0000669) SubClassOf(obo:CL_0000650 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000134)) @@ -10500,16 +11463,18 @@ AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000651 "neck cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000651 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000651 "mucous neck cell") SubClassOf(obo:CL_0000651 obo:CL_0000150) -SubClassOf(obo:CL_0000651 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0070254)) +SubClassOf(obo:CL_0000651 obo:CL_0000319) # Class: obo:CL_0000652 (pinealocyte) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0517223651") Annotation(oboInOwl:hasDbXref "PMID:16687276") Annotation(oboInOwl:hasDbXref "http://en.wikipedia.org/wiki/Pinealocyte") obo:IAO_0000115 obo:CL_0000652 "This cell type produces and secretes melatonin and forms the pineal parenchyma. Extending from each cell body, which has a spherical, oval or lobulated mucleus, are one or more tortuous basophilic processes, containing parallel microtubules known as synaptic ribbons. These processes end in expanded terminal buds near capillaries or less, frequently, ependymal cells of the pineal recess. The terminal buds contain granular endoplasmic reticulum, mitochondria and electron-dense cored vesicles, which store monoamines and polypeptide hormones, release of which appears to require sympathetic innervation.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000652 "BTO:0001068") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000652 "FMA:83417") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000652 "ZFA:0009284") AnnotationAssertion(rdfs:label obo:CL_0000652 "pinealocyte") SubClassOf(obo:CL_0000652 obo:CL_0000163) SubClassOf(obo:CL_0000652 obo:CL_0000710) +SubClassOf(obo:CL_0000652 obo:CL_0002319) SubClassOf(obo:CL_0000652 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001905)) SubClassOf(obo:CL_0000652 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030187)) @@ -10520,6 +11485,7 @@ AnnotationAssertion(obo:RO_0002175 obo:CL_0000653 obo:NCBITaxon_9606) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:70967") oboInOwl:hasBroadSynonym obo:CL_0000653 "epithelial cell of visceral layer of glomerular capsule") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000653 "BTO:0002295") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000653 "FMA:70967") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000653 "ZFA:0009285") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:70967") oboInOwl:hasExactSynonym obo:CL_0000653 "glomerular podocyte") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000653 "glomerular visceral epithelial cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000653 "kidney podocyte") @@ -10530,6 +11496,8 @@ AnnotationAssertion(rdfs:label obo:CL_0000653 "podocyte") AnnotationAssertion(rdfs:seeAlso obo:CL_0000653 "https://github.com/obophenotype/cell-ontology/issues/1460") EquivalentClasses(obo:CL_0000653 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005751))) SubClassOf(obo:CL_0000653 obo:CL_0002522) +SubClassOf(obo:CL_0000653 obo:CL_1000450) +SubClassOf(obo:CL_0000653 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005751)) # Class: obo:CL_0000654 (primary oocyte) @@ -10542,6 +11510,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000654 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000654 "primary oocyte") EquivalentClasses(obo:CL_0000654 ObjectIntersectionOf(obo:CL_0000023 ObjectSomeValuesFrom(obo:CL_4030044 obo:GO_0051321))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000654 obo:CL_0000023) +SubClassOf(obo:CL_0000654 ObjectSomeValuesFrom(obo:CL_4030044 obo:GO_0051321)) SubClassOf(obo:CL_0000654 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000024)) # Class: obo:CL_0000655 (secondary oocyte) @@ -10553,6 +11522,7 @@ AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000655 "primary oogonium" AnnotationAssertion(rdfs:label obo:CL_0000655 "secondary oocyte") EquivalentClasses(obo:CL_0000655 ObjectIntersectionOf(obo:CL_0000023 ObjectSomeValuesFrom(obo:CL_4030044 obo:GO_0007147))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000655 obo:CL_0000023) +SubClassOf(obo:CL_0000655 ObjectSomeValuesFrom(obo:CL_4030044 obo:GO_0007147)) SubClassOf(obo:CL_0000655 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000654)) # Class: obo:CL_0000656 (primary spermatocyte) @@ -10563,17 +11533,23 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000656 "CALOHA:TS-2194") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000656 "FMA:72292") AnnotationAssertion(rdfs:label obo:CL_0000656 "primary spermatocyte") EquivalentClasses(obo:CL_0000656 ObjectIntersectionOf(obo:CL_0000017 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001394) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0007140))) +SubClassOf(obo:CL_0000656 obo:CL_0000017) +SubClassOf(obo:CL_0000656 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001394)) +SubClassOf(obo:CL_0000656 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0007140)) # Class: obo:CL_0000657 (secondary spermatocyte) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0721662544") obo:IAO_0000115 obo:CL_0000657 "One of the two haploid cells into which a primary spermatocyte divides, and which in turn gives origin to spermatids.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000657 "BTO:0000709") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000657 "CALOHA:TS-2195") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000657 "FBbt:00004941") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000657 "FBbt:00004941") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000657 "FMA:72293") AnnotationAssertion(rdfs:label obo:CL_0000657 "secondary spermatocyte") EquivalentClasses(obo:CL_0000657 ObjectIntersectionOf(obo:CL_0000017 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001375) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0007142))) +SubClassOf(obo:CL_0000657 obo:CL_0000017) +SubClassOf(obo:CL_0000657 obo:CL_0000413) SubClassOf(obo:CL_0000657 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000656)) +SubClassOf(obo:CL_0000657 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0007142)) # Class: obo:CL_0000658 (cuticle secreting cell) @@ -10629,6 +11605,7 @@ AnnotationAssertion(owl:deprecated obo:CL_0000665 "true"^^xsd:boolean) # Class: obo:CL_0000666 (fenestrated cell) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000666 "ZFA:0009286") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000666 "window cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000666 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000666 "fenestrated cell") @@ -10637,6 +11614,7 @@ SubClassOf(obo:CL_0000666 obo:CL_0000066) # Class: obo:CL_0000667 (collagen secreting cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0000667 "An extracellular matrix secreting cell that secretes collagen.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000667 "ZFA:0009287") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000667 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000667 "collagen secreting cell") SubClassOf(obo:CL_0000667 obo:CL_0000327) @@ -10656,6 +11634,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:dsd") Annotation(oboInOwl AnnotationAssertion(obo:RO_0002175 obo:CL_0000669 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000669 "BTO:0002441") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000669 "FMA:63174") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000669 "ZFA:0009112") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:17986482") oboInOwl:hasExactSynonym obo:CL_0000669 "ARC") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000669 "adventitial reticular cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000669 "cell of Rouget") @@ -10675,6 +11654,7 @@ SubClassOf(obo:CL_0000669 obo:CL_0008034) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:1381289") obo:IAO_0000115 obo:CL_0000670 "A primordial germ cell is a diploid germ cell precursors that transiently exist in the embryo before they enter into close association with the somatic cells of the gonad and become irreversibly committed as germ cells.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000670 "FMA:70567") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000670 "ZFA:0009288") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000670 "gonocyte") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000670 "primitive germ cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000670 cl:cellxgene_subset) @@ -10682,11 +11662,12 @@ AnnotationAssertion(rdfs:label obo:CL_0000670 "primordial germ cell") EquivalentClasses(obo:CL_0000670 ObjectIntersectionOf(obo:CL_0000039 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000922) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0048870))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000670 obo:CL_0000039) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000670 obo:CL_0000219) +SubClassOf(obo:CL_0000670 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000922)) # Class: obo:CL_0000671 (centripetally migrating follicle cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:36807509") obo:IAO_0000115 obo:CL_0000671 "A follicle cell that migrates from the dorso-anterior part of the oocyte associated follicular epithelium, in between the nurse cells and the oocyte, and participates in the formation of the operculum.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000671 "FBbt:00004906") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000671 "FBbt:00004906") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000671 "centripetal follicle cell") AnnotationAssertion(rdfs:label obo:CL_0000671 "centripetally migrating follicle cell") SubClassOf(obo:CL_0000671 obo:CL_0000477) @@ -10702,7 +11683,7 @@ AnnotationAssertion(owl:deprecated obo:CL_0000672 "true"^^xsd:boolean) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1016/S1467-8039(03)00009-4") obo:IAO_0000115 obo:CL_0000673 "An intrinsic neuron of the mushroom body of arthropods and annelids. They have tightly packed, cytoplasm-poor cell bodies.") AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000673 "mushroom body intrinsic neuron") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000673 "FBbt:00003686") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000673 "FBbt:00003686") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000673 "globuli cell") AnnotationAssertion(rdfs:label obo:CL_0000673 "Kenyon cell") SubClassOf(obo:CL_0000673 obo:CL_0000028) @@ -10711,7 +11692,7 @@ SubClassOf(obo:CL_0000673 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000105 # Class: obo:CL_0000674 (interfollicle cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:36531940") obo:IAO_0000115 obo:CL_0000674 "A follicle cell that is part of the stalk connecting adjacent egg chambers.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000674 "FBbt:00004910") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000674 "FBbt:00004910") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000674 "stalk cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000674 "stalk follicle cell") AnnotationAssertion(rdfs:label obo:CL_0000674 "interfollicle cell") @@ -10733,6 +11714,7 @@ SubClassOf(obo:CL_0000676 obo:CL_0000378) # Class: obo:CL_0000677 (gut absorptive cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "JB:jb") obo:IAO_0000115 obo:CL_0000677 "Cell of the intestinal epithelium with a brush border made up of many parallel packed microvilli; associated with absorption, particularly of macromolecules.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000677 "ZFA:0009289") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000677 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000677 "gut absorptive cell") SubClassOf(obo:CL_0000677 obo:CL_0000000) @@ -10747,26 +11729,33 @@ SubClassOf(obo:CL_0000678 obo:CL_0000540) AnnotationAssertion(obo:IAO_0000115 obo:CL_0000679 "A neuron that is capable of some neurotansmission by glutamate secretion.") AnnotationAssertion(obo:RO_0002175 obo:CL_0000679 obo:NCBITaxon_9606) -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000679 "FBbt:00100291") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000679 "FBbt:00100291") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000679 "WBbt:0006829") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000679 "ZFA:0009290") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000679 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000679 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000679 "glutamatergic neuron") EquivalentClasses(obo:CL_0000679 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061535))) +SubClassOf(obo:CL_0000679 obo:CL_0000151) SubClassOf(obo:CL_0000679 obo:CL_0000540) +SubClassOf(obo:CL_0000679 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061535)) # Class: obo:CL_0000680 (muscle precursor cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") obo:IAO_0000115 obo:CL_0000680 "A non-terminally differentiated cell that is capable of developing into a muscle cell.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000680 "ZFA:0009291") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000680 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000680 "muscle precursor cell") EquivalentClasses(obo:CL_0000680 ObjectIntersectionOf(obo:CL_0011115 ObjectSomeValuesFrom(obo:RO_0002203 obo:CL_0000187))) +SubClassOf(obo:CL_0000680 obo:BFO_0000002) SubClassOf(obo:CL_0000680 obo:CL_0000055) SubClassOf(obo:CL_0000680 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000222)) +SubClassOf(obo:CL_0000680 ObjectSomeValuesFrom(obo:RO_0002203 obo:CL_0000187)) # Class: obo:CL_0000681 (radial glial cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:dph") obo:IAO_0000115 obo:CL_0000681 "A cell present in the developing CNS. Functions as both a precursor cell and as a scaffold to support neuronal migration.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000681 "ZFA:0009292") AnnotationAssertion(oboInOwl:hasNarrowSynonym obo:CL_0000681 "forebrain radial glial cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000681 cl:cellxgene_subset) AnnotationAssertion(rdfs:comment obo:CL_0000681 "Unlike that of mammals, the brain of adult teleost fish exhibits an intense and widespread neurogenic activity as a result of the persistence of @@ -10782,21 +11771,23 @@ AnnotationAssertion(obo:RO_0002175 obo:CL_0000682 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000682 "M cell"@en) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000682 "BTO:0003600") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000682 "FMA:62929") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000682 "ZFA:0009293") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000682 "M-cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000682 "microfold cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000682 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000682 core:human_reference_atlas) AnnotationAssertion(rdfs:comment obo:CL_0000682 "Should double check and see if M cells are particular to a specific region.") AnnotationAssertion(rdfs:label obo:CL_0000682 "M cell of gut") -SubClassOf(obo:CL_0000682 obo:CL_0000066) SubClassOf(obo:CL_0000682 obo:CL_0000473) SubClassOf(obo:CL_0000682 obo:CL_0000627) +SubClassOf(obo:CL_0000682 obo:CL_0002251) SubClassOf(obo:CL_0000682 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003929)) # Class: obo:CL_0000683 (ependymoglial cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "JB:jb") Annotation(oboInOwl:hasDbXref "http://neurolex.org/wiki/Category:Ependymoglial_Cell") obo:IAO_0000115 obo:CL_0000683 "A cell that transports hormones from neurosecretory cells. This nerve cell is characterized by bipolar shape and endfeet that contact a basal lamina around blood vessels, and/or the pia mater or vitreous body of the eye and additionally contact the ventricular surface or sub-retinal space.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000683 "MESH:D063928") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000683 "ZFA:0009294") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000683 "ependymal astrocyte") AnnotationAssertion(rdfs:label obo:CL_0000683 "ependymoglial cell") SubClassOf(obo:CL_0000683 obo:CL_0000127) @@ -10817,22 +11808,27 @@ AnnotationAssertion(owl:deprecated obo:CL_0000685 "true"^^xsd:boolean) # Class: obo:CL_0000686 (cerebrospinal fluid secreting cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0000686 "A columnar/cuboidal epithelial cell that secretes cerebrospinal fluid.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000686 "ZFA:0009295") AnnotationAssertion(rdfs:label obo:CL_0000686 "cerebrospinal fluid secreting cell") EquivalentClasses(obo:CL_0000686 ObjectIntersectionOf(obo:CL_0000151 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0033326))) -SubClassOf(obo:CL_0000686 obo:CL_0000075) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000686 obo:CL_0000151) +SubClassOf(obo:CL_0000686 obo:CL_0000710) SubClassOf(obo:CL_0000686 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000333)) +SubClassOf(obo:CL_0000686 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0033326)) # Class: obo:CL_0000687 (R1 photoreceptor cell) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000687 "FBbt:00004213") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000687 "R1 cell") AnnotationAssertion(rdfs:label obo:CL_0000687 "R1 photoreceptor cell") SubClassOf(obo:CL_0000687 obo:CL_0000488) +SubClassOf(obo:CL_0000687 obo:CL_2000019) SubClassOf(obo:CL_0000687 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000971)) # Class: obo:CL_0000688 (perijunctional fibroblast) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "JB:jb") obo:IAO_0000115 obo:CL_0000688 "A fibroblast-like cell that provides support at neuromuscular junctions in vertebrates and are localized outside the synaptic basal lamina.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000688 "ZFA:0009296") AnnotationAssertion(rdfs:label obo:CL_0000688 "perijunctional fibroblast") SubClassOf(obo:CL_0000688 obo:CL_0000057) SubClassOf(obo:CL_0000688 obo:CL_0000630) @@ -10845,21 +11841,32 @@ SubClassOf(obo:CL_0000689 obo:CL_0000163) # Class: obo:CL_0000690 (R2 photoreceptor cell) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000690 "FBbt:00004215") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000690 "R2 cell") AnnotationAssertion(rdfs:label obo:CL_0000690 "R2 photoreceptor cell") SubClassOf(obo:CL_0000690 obo:CL_0000488) +SubClassOf(obo:CL_0000690 obo:CL_2000019) SubClassOf(obo:CL_0000690 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000971)) # Class: obo:CL_0000691 (stellate interneuron) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0000691 "Any interneuron that has characteristic some stellate morphology.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000691 "ZFA:0009297") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000691 cl:BDS_subset) AnnotationAssertion(rdfs:label obo:CL_0000691 "stellate interneuron") EquivalentClasses(obo:CL_0000691 ObjectIntersectionOf(obo:CL_0000099 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070010))) +SubClassOf(obo:CL_0000691 obo:CL_0000099) +SubClassOf(obo:CL_0000691 obo:CL_0000104) +SubClassOf(obo:CL_0000691 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070010)) # Class: obo:CL_0000692 (terminal Schwann cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "JB:jb") Annotation(oboInOwl:hasDbXref "PMID:16136171") obo:IAO_0000115 obo:CL_0000692 "A neuroglial cell of the peripheral nervous system inside the basal lamina of the neuromuscular junction providing chemical and physical support to the synapse.") AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000692 "Schwann cell") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000692 "ZFA:0009298") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:18803315") oboInOwl:hasExactSynonym obo:CL_0000692 "perisynaptic Schwann cell") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:18803315") oboInOwl:hasExactSynonym obo:CL_0000692 "teloglia") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:18803315") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_0000692 "tSC") AnnotationAssertion(rdfs:label obo:CL_0000692 "terminal Schwann cell") SubClassOf(obo:CL_0000692 obo:CL_0000630) SubClassOf(obo:CL_0000692 obo:CL_0002376) @@ -10867,30 +11874,38 @@ SubClassOf(obo:CL_0000692 obo:CL_0002376) # Class: obo:CL_0000693 (neurogliaform cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "JB:jb") Annotation(oboInOwl:hasDbXref "PMID:17122314") obo:IAO_0000115 obo:CL_0000693 "An interneuron that has spider-like appearance with a small round soma, a large number (7-10) of short, smooth, or slightly beaded primary dendrites that give rise to only a few secondary branches, and a branched axon that establishes a dense axonal mesh with thin shafts.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000693 "ZFA:0009299") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:18568015") oboInOwl:hasExactSynonym obo:CL_0000693 "NGF cell") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:3235828") oboInOwl:hasExactSynonym obo:CL_0000693 "neuroglioform cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000693 "spiderweb cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000693 cl:BDS_subset) AnnotationAssertion(rdfs:label obo:CL_0000693 "neurogliaform cell") EquivalentClasses(obo:CL_0000693 ObjectIntersectionOf(obo:CL_0000099 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070001))) +SubClassOf(obo:CL_0000693 obo:CL_0000099) +SubClassOf(obo:CL_0000693 obo:CL_0000104) +SubClassOf(obo:CL_0000693 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070001)) # Class: obo:CL_0000694 (R3 photoreceptor cell) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000694 "FBbt:00004217") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000694 "R3 cell") AnnotationAssertion(rdfs:label obo:CL_0000694 "R3 photoreceptor cell") SubClassOf(obo:CL_0000694 obo:CL_0000488) +SubClassOf(obo:CL_0000694 obo:CL_2000019) SubClassOf(obo:CL_0000694 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000971)) # Class: obo:CL_0000695 (Cajal-Retzius cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:10600995") Annotation(oboInOwl:hasDbXref "PMID:9728912") obo:IAO_0000115 obo:CL_0000695 "A neuron of the human embryonic marginal zone which display, as a salient feature, radial ascending processes that contact the pial surface, and a horizontal axon plexus located in the deep marginal zone. One feature of these cells in mammals is that they express the Reelin gene.") AnnotationAssertion(terms:contributor obo:CL_0000695 ) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000695 "ZFA:0009300") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "WikipediaVersioned:Cajal–Retzius_cell&oldid=1032081753") oboInOwl:hasExactSynonym obo:CL_0000695 "CR cells") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "WikipediaVersioned:Cajal–Retzius_cell&oldid=1032081753") oboInOwl:hasExactSynonym obo:CL_0000695 "Horizontal cells of Cajal") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000695 cl:cellxgene_subset) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:10600995") rdfs:comment obo:CL_0000695 "While previously called 'pioneer neurons' of the marginal zone, Cajal-Retzius cells are differentiated from pioneer neurons (which are Reln-negative) by their Reln-immunoreactivity.") AnnotationAssertion(rdfs:label obo:CL_0000695 "Cajal-Retzius cell") SubClassOf(obo:CL_0000695 obo:CL_0000117) +SubClassOf(obo:CL_0000695 obo:CL_2000029) SubClassOf(obo:CL_0000695 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070006)) SubClassOf(obo:CL_0000695 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0010403)) @@ -10907,9 +11922,11 @@ SubClassOf(obo:CL_0000696 obo:CL_0000167) # Class: obo:CL_0000697 (R4 photoreceptor cell) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000697 "FBbt:00004219") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000697 "R4 cell") AnnotationAssertion(rdfs:label obo:CL_0000697 "R4 photoreceptor cell") SubClassOf(obo:CL_0000697 obo:CL_0000488) +SubClassOf(obo:CL_0000697 obo:CL_2000019) SubClassOf(obo:CL_0000697 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000971)) # Class: obo:CL_0000698 (obsolete paraganglial cell) @@ -10927,16 +11944,17 @@ SubClassOf(obo:CL_0000699 obo:CL_0000165) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:dhill") obo:IAO_0000115 obo:CL_0000700 "A neuron that releases dopamine as a neurotransmitter.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000700 "BTO:0004032") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000700 "FBbt:00005131") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000700 "FBbt:00005131") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000700 "FMA:84787") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000700 "MESH:D059290") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000700 "WBbt:0006746") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000700 "ZFA:0009301") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000700 "dopaminergic cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000700 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000700 "dopaminergic neuron") EquivalentClasses(obo:CL_0000700 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061527))) -SubClassOf(obo:CL_0000700 obo:CL_0000540) SubClassOf(obo:CL_0000700 obo:CL_4033050) +SubClassOf(obo:CL_0000700 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061527)) # Class: obo:CL_0000701 (paraganglia type 2 cell) @@ -10946,30 +11964,36 @@ SubClassOf(obo:CL_0000701 obo:CL_0000630) # Class: obo:CL_0000702 (R5 photoreceptor cell) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000702 "FBbt:00004221") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000702 "R5 cell") AnnotationAssertion(rdfs:label obo:CL_0000702 "R5 photoreceptor cell") SubClassOf(obo:CL_0000702 obo:CL_0000488) +SubClassOf(obo:CL_0000702 obo:CL_2000019) SubClassOf(obo:CL_0000702 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000971)) # Class: obo:CL_0000703 (sustentacular cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "JB:jb") obo:IAO_0000115 obo:CL_0000703 "Cell that provides some or all mechanical, nutritional and phagocytic support to their neighbors.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000703 "BTO:0002315") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000703 "ZFA:0009302") AnnotationAssertion(rdfs:label obo:CL_0000703 "sustentacular cell") SubClassOf(obo:CL_0000703 obo:CL_0000630) # Class: obo:CL_0000704 (endothelial tip cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:15376331") obo:IAO_0000115 obo:CL_0000704 "A specialized endothelial cell that senses extracellular signals and guides the directed growth of blood vessels.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000704 "ZFA:0009303") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000704 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000704 "endothelial tip cell") SubClassOf(obo:CL_0000704 obo:CL_0000071) # Class: obo:CL_0000705 (R6 photoreceptor cell) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000705 "FBbt:00004223") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000705 "R6 cell") AnnotationAssertion(rdfs:label obo:CL_0000705 "R6 photoreceptor cell") SubClassOf(obo:CL_0000705 obo:CL_0000488) +SubClassOf(obo:CL_0000705 obo:CL_2000019) SubClassOf(obo:CL_0000705 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000971)) # Class: obo:CL_0000706 (choroid plexus epithelial cell) @@ -10979,35 +12003,45 @@ AnnotationAssertion(obo:RO_0002175 obo:CL_0000706 obo:NCBITaxon_9606) AnnotationAssertion(terms:date obo:CL_0000706 "2023-08-04T08:48:30Z"^^xsd:dateTime) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOI:10.1101/2022.10.12.511898") oboInOwl:hasBroadSynonym obo:CL_0000706 "choroid plexus cell") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000706 "FMA:70549") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000706 "ZFA:0009304") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000706 "epithelial cell of choroid plexus") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000706 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000706 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000706 "choroid plexus epithelial cell") EquivalentClasses(obo:CL_0000706 ObjectIntersectionOf(obo:CL_0000065 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001886))) +SubClassOf(obo:CL_0000706 obo:CL_0000065) SubClassOf(obo:CL_0000706 obo:CL_0000627) +SubClassOf(obo:CL_0000706 obo:CL_0002319) +SubClassOf(obo:CL_0000706 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001886)) # Class: obo:CL_0000707 (R7 photoreceptor cell) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000707 "FBbt:00004225") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000707 "R7 cell") AnnotationAssertion(rdfs:label obo:CL_0000707 "R7 photoreceptor cell") -SubClassOf(obo:CL_0000707 obo:CL_0000287) SubClassOf(obo:CL_0000707 obo:CL_0000494) +SubClassOf(obo:CL_0000707 obo:CL_2000019) +SubClassOf(obo:CL_0000707 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000971)) # Class: obo:CL_0000708 (leptomeningeal cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "JB:jb") obo:IAO_0000115 obo:CL_0000708 "Stromal cell that forms the internal covering of the vertebrate brain and produces ECM for this and the choroid plexus.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000708 "ZFA:0009305") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000708 "leptomemingeal cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000708 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000708 "leptomeningeal cell") EquivalentClasses(obo:CL_0000708 ObjectIntersectionOf(obo:CL_0000327 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003210))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000708 obo:CL_0000327) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000708 obo:CL_0002320) +SubClassOf(obo:CL_0000708 obo:CL_0002319) +SubClassOf(obo:CL_0000708 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003210)) # Class: obo:CL_0000709 (R8 photoreceptor cell) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000709 "FBbt:00004227") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000709 "R8 cell") AnnotationAssertion(rdfs:label obo:CL_0000709 "R8 photoreceptor cell") SubClassOf(obo:CL_0000709 obo:CL_0000488) +SubClassOf(obo:CL_0000709 obo:CL_2000019) SubClassOf(obo:CL_0000709 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000971)) # Class: obo:CL_0000710 (neurecto-epithelial cell) @@ -11020,6 +12054,8 @@ AnnotationAssertion(rdfs:comment obo:CL_0000710 "The term \"neuroepithelial cell AnnotationAssertion(rdfs:label obo:CL_0000710 "neurecto-epithelial cell") EquivalentClasses(obo:CL_0000710 ObjectIntersectionOf(obo:CL_0002077 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000133))) SubClassOf(obo:CL_0000710 obo:CL_0000075) +SubClassOf(obo:CL_0000710 obo:CL_0002077) +SubClassOf(obo:CL_0000710 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000133)) # Class: obo:CL_0000711 (cumulus cell) @@ -11035,10 +12071,11 @@ SubClassOf(obo:CL_0000711 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000501)) # Class: obo:CL_0000712 (stratum granulosum cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0000712 "Any epidermal cell that is part of some stratum granulosum of epidermis.") AnnotationAssertion(rdfs:label obo:CL_0000712 "stratum granulosum cell") EquivalentClasses(obo:CL_0000712 ObjectIntersectionOf(obo:CL_0000362 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002069))) SubClassOf(obo:CL_0000712 obo:CL_0000362) -SubClassOf(obo:CL_0000712 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001003)) +SubClassOf(obo:CL_0000712 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002069)) # Class: obo:CL_0000713 (corona radiata cell) @@ -11054,7 +12091,7 @@ AnnotationAssertion(owl:deprecated obo:CL_0000714 "true"^^xsd:boolean) # Class: obo:CL_0000715 (embryonic crystal cell) AnnotationAssertion(obo:IAO_0000115 obo:CL_0000715 "A crystal cell that derives from the embryonic head mesoderm.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000715 "FBbt:00001690") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000715 "FBbt:00001690") AnnotationAssertion(rdfs:label obo:CL_0000715 "embryonic crystal cell") SubClassOf(obo:CL_0000715 obo:CL_0000392) SubClassOf(obo:CL_0000715 obo:CL_0011008) @@ -11078,12 +12115,13 @@ AnnotationAssertion(owl:deprecated obo:CL_0000717 "true"^^xsd:boolean) # Class: obo:CL_0000718 (compound eye cone cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34343526") Annotation(oboInOwl:hasDbXref "doi:10.1017/CBO9780511818202.023") obo:IAO_0000115 obo:CL_0000718 "A cell of an ommatidium that secretes lens materials.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000718 "FBbt:00004193") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000718 "FBbt:00004193") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000718 "Semper cell") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000718 "cone cell (sensu Endopterygota)") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1242/jcs.s3-105.71.331") rdfs:comment obo:CL_0000718 "Not to be confused with the Semper cells of the Semper organ found in gastropods.") AnnotationAssertion(rdfs:label obo:CL_0000718 "compound eye cone cell") SubClassOf(obo:CL_0000718 obo:CL_0000306) +SubClassOf(obo:CL_0000718 obo:CL_0002319) SubClassOf(obo:CL_0000718 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000971)) # Class: obo:CL_0000719 (posterior cone cell (sensu Endopterygota)) @@ -11104,6 +12142,7 @@ SubClassOf(obo:CL_0000721 obo:CL_0000718) # Class: obo:CL_0000722 (cystoblast) AnnotationAssertion(rdfs:label obo:CL_0000722 "cystoblast") +SubClassOf(obo:CL_0000722 obo:CL_0000255) SubClassOf(obo:CL_0000722 obo:CL_0000586) SubClassOf(obo:CL_0000722 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_6656)) @@ -11112,8 +12151,11 @@ SubClassOf(obo:CL_0000722 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_6656 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GO:0048103") obo:IAO_0000115 obo:CL_0000723 "A stem cell that can give rise to cell types of the body other than those of the germ-line.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000723 "CALOHA:TS-2086") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000723 "MESH:D053687") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000723 "ZFA:0009307") AnnotationAssertion(rdfs:label obo:CL_0000723 "somatic stem cell") EquivalentClasses(obo:CL_0000723 ObjectIntersectionOf(obo:CL_0000034 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0048103))) +SubClassOf(obo:CL_0000723 obo:CL_0000034) +SubClassOf(obo:CL_0000723 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0048103)) # Class: obo:CL_0000724 (heterocyst) @@ -11125,8 +12167,11 @@ SubClassOf(obo:CL_0000724 obo:CL_0000725) # Class: obo:CL_0000725 (nitrogen fixing cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0000725 "Any cell that is capable of some nitrogen fixation.") AnnotationAssertion(rdfs:label obo:CL_0000725 "nitrogen fixing cell") EquivalentClasses(obo:CL_0000725 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0009399))) +SubClassOf(obo:CL_0000725 obo:CL_0000000) +SubClassOf(obo:CL_0000725 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0009399)) # Class: obo:CL_0000726 (chlamydospore) @@ -11166,10 +12211,13 @@ SubClassOf(obo:CL_0000730 obo:CL_0000066) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "MA:ma") Annotation(oboInOwl:hasDbXref "doi:10.1038/s41385-022-00565-0") obo:IAO_0000115 obo:CL_0000731 "A cell of a layer of transitional epithelium in the wall of the proximal urethra, bladder, ureter or renal pelvis, external to the lamina propria.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000731 "FMA:84127") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000731 "ZFA:0009308") AnnotationAssertion(oboInOwl:hasNarrowSynonym obo:CL_0000731 "urinary tract transitional epithelial cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000731 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000731 "urothelial cell") EquivalentClasses(obo:CL_0000731 ObjectIntersectionOf(obo:CL_0000244 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000365))) +SubClassOf(obo:CL_0000731 obo:CL_0000244) +SubClassOf(obo:CL_0000731 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000365)) # Class: obo:CL_0000732 (amoeboid cell) @@ -11193,7 +12241,7 @@ AnnotationAssertion(owl:deprecated obo:CL_0000734 "true"^^xsd:boolean) # Class: obo:CL_0000735 (lymph gland hemocyte) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1242/dev.00702") obo:IAO_0000115 obo:CL_0000735 "A hemocyte that derives from the larval lymph gland.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000735 "FBbt:00005917") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000735 "FBbt:00005917") AnnotationAssertion(rdfs:label obo:CL_0000735 "lymph gland hemocyte") SubClassOf(obo:CL_0000735 obo:CL_0000387) @@ -11210,9 +12258,12 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000737 "BTO:0002916") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000737 "CALOHA:TS-2157") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000737 "FMA:86936") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000737 "ZFA:0005784") AnnotationAssertion(rdfs:label obo:CL_0000737 "striated muscle cell") EquivalentClasses(obo:CL_0000737 ObjectIntersectionOf(obo:CL_0000187 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0030017) ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001410))) SubClassOf(obo:CL_0000737 obo:CL_0000187) +SubClassOf(obo:CL_0000737 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0030017)) +SubClassOf(obo:CL_0000737 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001410)) DisjointClasses(obo:CL_0000737 obo:CL_0008000) # Class: obo:CL_0000738 (leukocyte) @@ -11224,6 +12275,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000738 "CALOHA:TS-0549") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000738 "FMA:62852") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000738 "MESH:D007962") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000738 "NCIT:C12529") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000738 "ZFA:0009309") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000738 "leucocyte") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000738 "white blood cell") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000738 "immune cell") @@ -11231,10 +12283,15 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000738 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000738 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000738 "leukocyte") EquivalentClasses(obo:CL_0000738 ObjectIntersectionOf(obo:CL_0000988 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0002505) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001667))) +SubClassOf(obo:CL_0000738 obo:BFO_0000002) +SubClassOf(obo:CL_0000738 obo:CL_0000219) +SubClassOf(obo:CL_0000738 obo:CL_0000255) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000738 obo:CL_0000988) +SubClassOf(obo:CL_0000738 obo:CL_0002242) SubClassOf(obo:CL_0000738 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002405)) SubClassOf(obo:CL_0000738 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_7742)) SubClassOf(obo:CL_0000738 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000037)) +SubClassOf(obo:CL_0000738 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001667)) # Class: obo:CL_0000739 (obo:CL_0000739) @@ -11249,6 +12306,7 @@ AnnotationAssertion(obo:RO_0002175 obo:CL_0000740 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000740 "BTO:0001800") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000740 "FMA:67765") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000740 "MESH:D012165") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000740 "ZFA:0009310") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000740 "gangliocyte") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000740 "ganglion cell of retina") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1038/s41598-020-66092-9") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_0000740 "RGC") @@ -11263,6 +12321,7 @@ SubClassOf(obo:CL_0000740 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000966 # Class: obo:CL_0000741 (spinal accessory motor neuron) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:16267219") obo:IAO_0000115 obo:CL_0000741 "A motor neuron that is located in the cervical region of the spinal cord and selectively innervates the sternocleidmastoid or trapezius muscle. Unlike other motor neurons, they extend axons dorsally along lateral margins of the spinal cord.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000741 "ZFA:0009311") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000741 "SACMN") AnnotationAssertion(rdfs:label obo:CL_0000741 "spinal accessory motor neuron") SubClassOf(obo:CL_0000741 obo:CL_0008039) @@ -11270,14 +12329,15 @@ SubClassOf(obo:CL_0000741 obo:CL_0008039) # Class: obo:CL_0000742 (periarticular chondrocyte) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:15951842") obo:IAO_0000115 obo:CL_0000742 "A round chondrocyte that first differentiates in the late embryonic growth plate of bone.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000742 "ZFA:0009312") AnnotationAssertion(rdfs:label obo:CL_0000742 "periarticular chondrocyte") -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000742 obo:CL_0000138) -SubClassOf(obo:CL_0000742 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0010996)) +SubClassOf(obo:CL_0000742 obo:CL_1001607) # Class: obo:CL_0000743 (hypertrophic chondrocyte) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GO_REF:0000034") Annotation(oboInOwl:hasDbXref "PMID:15951842") obo:IAO_0000115 obo:CL_0000743 "Chondrocyte that is terminally differentiated, produces type X collagen, is large in size, and often associated with the replacement of cartilage by bone (endochondral ossification).") AnnotationAssertion(obo:RO_0002175 obo:CL_0000743 obo:NCBITaxon_9606) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000743 "ZFA:0009313") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000743 core:human_reference_atlas) AnnotationAssertion(rdfs:comment obo:CL_0000743 "is hypertrophic pathological or normal? and can it be described using a pato term?") AnnotationAssertion(rdfs:label obo:CL_0000743 "hypertrophic chondrocyte") @@ -11286,6 +12346,7 @@ SubClassOf(obo:CL_0000743 obo:CL_0000138) # Class: obo:CL_0000744 (columnar chondrocyte) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:15951842") obo:IAO_0000115 obo:CL_0000744 "A columnar chondrocyte that differentiates in the late embryonic growth plate of bone. Columnar chondrocytes vigorously proliferate and form columns in the growth plate.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000744 "ZFA:0009314") AnnotationAssertion(rdfs:label obo:CL_0000744 "columnar chondrocyte") SubClassOf(obo:CL_0000744 obo:CL_0000138) @@ -11294,6 +12355,7 @@ SubClassOf(obo:CL_0000744 obo:CL_0000138) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ISBN:0195088433") obo:IAO_0000115 obo:CL_0000745 "A neuron that laterally connects other neurons in the inner nuclear layer of the retina.") AnnotationAssertion(obo:RO_0002175 obo:CL_0000745 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000745 "BTO:0004120") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000745 "ZFA:0009315") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000745 "horizontal cell") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1038/s41598-020-66092-9") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_0000745 "HC") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1038/s41598-020-66092-9") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) Annotation(oboInOwl:hasSynonymType obo:OMO_0003004) oboInOwl:hasRelatedSynonym obo:CL_0000745 "HCs") @@ -11314,6 +12376,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000746 "BTO:0001539") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000746 "CALOHA:TS-0115") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000746 "FMA:14067") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000746 "MESH:D032383") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000746 "ZFA:0009316") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GO:0048739") oboInOwl:hasExactSynonym obo:CL_0000746 "cardiac muscle fiber") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000746 "cardiac myocyte") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000746 "cardiomyocyte") @@ -11324,13 +12387,19 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000746 core:human_reference_atlas) AnnotationAssertion(rdfs:comment obo:CL_0000746 "This class encompasses the muscle cells responsible for heart* contraction in both vertebrates and arthropods. The ultrastucture of a wide range of arthropod heart cells has been examined including spiders, horseshoe crabs, crustaceans (see Sherman, 1973 and refs therein) and insects (see Lehmacher et al (2012) and refs therein). According to these refs, the cells participating in heart contraction in all cases are transversely striated. Insects hearts additionally contain ostial cells, also transversely striated muscle cells, but which do not participate in heart contraction.") AnnotationAssertion(rdfs:label obo:CL_0000746 "cardiac muscle cell") EquivalentClasses(obo:CL_0000746 ObjectIntersectionOf(obo:CL_0000187 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0007100) ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0030017) ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0002478) ObjectSomeValuesFrom(obo:RO_0000056 obo:GO_0060047))) +SubClassOf(obo:CL_0000746 obo:CL_0000737) +SubClassOf(obo:CL_0000746 obo:CL_0002494) +SubClassOf(obo:CL_0000746 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0002478)) +SubClassOf(obo:CL_0000746 ObjectSomeValuesFrom(obo:RO_0000056 obo:GO_0060047)) SubClassOf(obo:CL_0000746 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000513)) # Class: obo:CL_0000747 (cyanophore) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "SANBI:mhl") obo:IAO_0000115 obo:CL_0000747 "A pigment cell derived from the neural crest. Contains blue pigment of unknown chemical composition in fibrous organelles termed cyanosomes. This gives a blue appearance.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000747 "ZFA:0009317") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000747 "blue chromatophore") AnnotationAssertion(rdfs:label obo:CL_0000747 "cyanophore") +SubClassOf(obo:CL_0000747 obo:BFO_0000002) SubClassOf(obo:CL_0000747 obo:CL_0000147) SubClassOf(obo:CL_0000747 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0005005)) @@ -11338,6 +12407,7 @@ SubClassOf(obo:CL_0000747 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0005005)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:14689473") obo:IAO_0000115 obo:CL_0000748 "A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the inner plexiform layer.") AnnotationAssertion(obo:RO_0002175 obo:CL_0000748 obo:NCBITaxon_9606) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000748 "ZFA:0009318") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1038/s41598-020-66092-9") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_0000748 "BC") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1038/s41598-020-66092-9") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) Annotation(oboInOwl:hasSynonymType obo:OMO_0003004) oboInOwl:hasRelatedSynonym obo:CL_0000748 "BCs") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GSE137537") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) Annotation(oboInOwl:hasSynonymType obo:OMO_0003004) oboInOwl:hasRelatedSynonym obo:CL_0000748 "BPs") @@ -11346,14 +12416,18 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000748 cl:eye_upper_slim) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000748 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000748 "retinal bipolar neuron") EquivalentClasses(obo:CL_0000748 ObjectIntersectionOf(obo:CL_0000103 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001791))) +SubClassOf(obo:CL_0000748 obo:CL_0000103) +SubClassOf(obo:CL_0000748 obo:CL_0000679) +SubClassOf(obo:CL_0000748 obo:CL_0008028) SubClassOf(obo:CL_0000748 obo:CL_0009004) +SubClassOf(obo:CL_0000748 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001791)) SubClassOf(obo:CL_0000748 ObjectSomeValuesFrom(obo:RO_0002215 ObjectIntersectionOf(obo:GO_0061535 ObjectSomeValuesFrom(obo:BFO_0000050 obo:GO_0098976)))) -SubClassOf(obo:CL_0000748 ObjectSomeValuesFrom(obo:RO_0002216 obo:GO_0007601)) # Class: obo:CL_0000749 (ON-bipolar cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:14689473") obo:IAO_0000115 obo:CL_0000749 "A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the inner half of the inner plexiform layer. These cells depolarize in response to light stimulation of their corresponding photoreceptors.") AnnotationAssertion(obo:RO_0002175 obo:CL_0000749 obo:NCBITaxon_9606) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000749 "ZFA:0009319") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000749 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000749 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000749 "ON-bipolar cell") @@ -11363,6 +12437,7 @@ SubClassOf(obo:CL_0000749 obo:CL_0000748) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:14689473") obo:IAO_0000115 obo:CL_0000750 "A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the outer half of the inner plexiform layer. These cells depolarize in response to light to dark transition.") AnnotationAssertion(obo:RO_0002175 obo:CL_0000750 obo:NCBITaxon_9606) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000750 "ZFA:0009320") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000750 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000750 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000750 "OFF-bipolar cell") @@ -11373,9 +12448,12 @@ SubClassOf(obo:CL_0000750 obo:CL_0000748) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:14689473") obo:IAO_0000115 obo:CL_0000751 "A bipolar neuron found in the retina that is synapsed by rod photoreceptor cells but not by cone photoreceptor cells. These neurons depolarize in response to light.") AnnotationAssertion(obo:RO_0002175 obo:CL_0000751 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000751 "FMA:67750") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000751 "ZFA:0009321") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000751 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000751 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000751 "rod bipolar cell") +SubClassOf(obo:CL_0000751 obo:BFO_0000002) +SubClassOf(obo:CL_0000751 obo:CL_0000255) SubClassOf(obo:CL_0000751 obo:CL_0000749) SubClassOf(obo:CL_0000751 ObjectSomeValuesFrom(obo:RO_0002102 obo:UBERON_0008925)) SubClassOf(obo:CL_0000751 ObjectSomeValuesFrom(obo:RO_0002102 obo:UBERON_0008926)) @@ -11385,18 +12463,19 @@ SubClassOf(obo:CL_0000751 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_4067 # Class: obo:CL_0000752 (cone retinal bipolar cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:14689473") obo:IAO_0000115 obo:CL_0000752 "A bipolar neuron found in the retina and having connections with cone photoreceptor cells and neurons in the inner plexiform layer.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000752 "ZFA:0009322") AnnotationAssertion(rdfs:label obo:CL_0000752 "cone retinal bipolar cell") EquivalentClasses(obo:CL_0000752 ObjectIntersectionOf(obo:CL_0000748 ObjectSomeValuesFrom(obo:RO_0002103 obo:CL_0000573))) SubClassOf(obo:CL_0000752 obo:CL_0000748) +SubClassOf(obo:CL_0000752 ObjectSomeValuesFrom(obo:RO_0002103 obo:CL_0000573)) # Class: obo:CL_0000753 (type 1 cone bipolar cell (sensu Mus)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:14689473") obo:IAO_0000115 obo:CL_0000753 "An OFF-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the outer half of the inner plexiform layer. The cell body of these cells is in the middle of the inner plexiform layer. The dendritic tree is stout and the axon terminates in sublamina 1. The axonal terminal is wide and has only a few varicosities.") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000753 "DB1 cone bipolar cell") AnnotationAssertion(rdfs:label obo:CL_0000753 "type 1 cone bipolar cell (sensu Mus)") -SubClassOf(obo:CL_0000753 obo:CL_0000748) +SubClassOf(obo:CL_0000753 obo:CL_0000752) SubClassOf(obo:CL_0000753 ObjectSomeValuesFrom(obo:RO_0002102 obo:UBERON_0008922)) -SubClassOf(obo:CL_0000753 ObjectSomeValuesFrom(obo:RO_0002103 obo:CL_0000573)) # Class: obo:CL_0000754 (type 2 cone bipolar cell (sensu Mus)) @@ -11404,18 +12483,20 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:14689473") Annotation(ob AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000754 "FMB cone bipolar cell") AnnotationAssertion(rdfs:label obo:CL_0000754 "type 2 cone bipolar cell (sensu Mus)") EquivalentClasses(Annotation(oboInOwl:hasDbXref "PMID:27565351") obo:CL_0000754 ObjectIntersectionOf(obo:CL_0000748 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_P50481) ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_Q8R4I7) ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_Q9ER75))) -SubClassOf(obo:CL_0000754 obo:CL_0000748) +SubClassOf(obo:CL_0000754 obo:BFO_0000002) +SubClassOf(obo:CL_0000754 obo:CL_0000752) SubClassOf(obo:CL_0000754 ObjectSomeValuesFrom(obo:RO_0002102 obo:UBERON_0008922)) -SubClassOf(obo:CL_0000754 ObjectSomeValuesFrom(obo:RO_0002103 obo:CL_0000573)) +SubClassOf(obo:CL_0000754 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_P50481)) +SubClassOf(obo:CL_0000754 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_Q8R4I7)) +SubClassOf(obo:CL_0000754 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_Q9ER75)) # Class: obo:CL_0000755 (type 3 cone bipolar cell (sensu Mus)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:14689473") obo:IAO_0000115 obo:CL_0000755 "An OFF-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the outer half of the inner plexiform layer. The dendritic tree is delicate and the dendritic tips appear small when compared with type 1 cells. The axon terminal is stratified and restricted to sublamina 2 of the inner plexiform layer.") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000755 "DB2 cone bipolar cell") AnnotationAssertion(rdfs:label obo:CL_0000755 "type 3 cone bipolar cell (sensu Mus)") -SubClassOf(obo:CL_0000755 obo:CL_0000748) +SubClassOf(obo:CL_0000755 obo:CL_0000752) SubClassOf(obo:CL_0000755 ObjectSomeValuesFrom(obo:RO_0002102 obo:UBERON_0008923)) -SubClassOf(obo:CL_0000755 ObjectSomeValuesFrom(obo:RO_0002103 obo:CL_0000573)) SubClassOf(obo:CL_0000755 ObjectSomeValuesFrom(obo:RO_0002103 obo:CL_0000604)) # Class: obo:CL_0000756 (type 4 cone bipolar cell (sensu Mus)) @@ -11423,10 +12504,9 @@ SubClassOf(obo:CL_0000755 ObjectSomeValuesFrom(obo:RO_0002103 obo:CL_0000604)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:14689473") obo:IAO_0000115 obo:CL_0000756 "An OFF-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the outer half of the inner plexiform layer. The cell has a diffuse axon terminal with varicosities in sublaminae 1 and 2 of the inner plexiform layer.") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000756 "DB3 cone bipolar cell") AnnotationAssertion(rdfs:label obo:CL_0000756 "type 4 cone bipolar cell (sensu Mus)") -SubClassOf(obo:CL_0000756 obo:CL_0000748) +SubClassOf(obo:CL_0000756 obo:CL_0000752) SubClassOf(obo:CL_0000756 ObjectSomeValuesFrom(obo:RO_0002102 obo:UBERON_0008923)) SubClassOf(obo:CL_0000756 ObjectSomeValuesFrom(obo:RO_0002102 obo:UBERON_0008924)) -SubClassOf(obo:CL_0000756 ObjectSomeValuesFrom(obo:RO_0002103 obo:CL_0000573)) SubClassOf(obo:CL_0000756 ObjectSomeValuesFrom(obo:RO_0002103 obo:CL_0000604)) # Class: obo:CL_0000757 (type 5 cone bipolar cell (sensu Mus)) @@ -11434,56 +12514,54 @@ SubClassOf(obo:CL_0000756 ObjectSomeValuesFrom(obo:RO_0002103 obo:CL_0000604)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:14689473") obo:IAO_0000115 obo:CL_0000757 "An ON-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the inner half of the inner plexiform layer. The axon terminal is restricted to sublamina 3 of the inner plexiform layer. It is narrowly stratified and branched. The dendritic tree has many delicate branches.") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000757 "DB4 cone bipolar cell") AnnotationAssertion(rdfs:label obo:CL_0000757 "type 5 cone bipolar cell (sensu Mus)") -SubClassOf(obo:CL_0000757 obo:CL_0000748) +SubClassOf(obo:CL_0000757 obo:CL_0000752) SubClassOf(obo:CL_0000757 ObjectSomeValuesFrom(obo:RO_0002102 obo:UBERON_0008924)) -SubClassOf(obo:CL_0000757 ObjectSomeValuesFrom(obo:RO_0002103 obo:CL_0000573)) # Class: obo:CL_0000758 (type 6 cone bipolar cell (sensu Mus)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:14689473") obo:IAO_0000115 obo:CL_0000758 "An ON-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the inner half of the inner plexiform layer. The cell has a loose, delicate axon terminal that opens in sublamina 3 of the inner plexiform layer and descends into sublamina 4.") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000758 "DB5 cone bipolar cell") AnnotationAssertion(rdfs:label obo:CL_0000758 "type 6 cone bipolar cell (sensu Mus)") -SubClassOf(obo:CL_0000758 obo:CL_0000748) +SubClassOf(obo:CL_0000758 obo:CL_0000752) SubClassOf(obo:CL_0000758 ObjectSomeValuesFrom(obo:RO_0002102 obo:UBERON_0008925)) -SubClassOf(obo:CL_0000758 ObjectSomeValuesFrom(obo:RO_0002103 obo:CL_0000573)) # Class: obo:CL_0000759 (type 7 cone bipolar cell (sensu Mus)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:14689473") obo:IAO_0000115 obo:CL_0000759 "An ON-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the inner half of the inner plexiform layer. The axon terminal is narrowly stratified and are found just below a calretinin-expressing band in sublamina 4 of the inner plexiform layer.") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000759 "IMB cone bipolar cell") AnnotationAssertion(rdfs:label obo:CL_0000759 "type 7 cone bipolar cell (sensu Mus)") -SubClassOf(obo:CL_0000759 obo:CL_0000748) +SubClassOf(obo:CL_0000759 obo:CL_0000752) SubClassOf(obo:CL_0000759 ObjectSomeValuesFrom(obo:RO_0002102 obo:UBERON_0008925)) -SubClassOf(obo:CL_0000759 ObjectSomeValuesFrom(obo:RO_0002103 obo:CL_0000573)) # Class: obo:CL_0000760 (type 8 cone bipolar cell (sensu Mus)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:14689473") obo:IAO_0000115 obo:CL_0000760 "An ON-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the inner half of the inner plexiform layer. This cell has the widest dendritic field and the widest axon terminal of all retinal bipolar cells. The axon terminal is delicate and stratified through sublaminae 4 and 5 of the inner plexiform layer.") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000760 "DB6 cone bipolar cell") AnnotationAssertion(rdfs:label obo:CL_0000760 "type 8 cone bipolar cell (sensu Mus)") -SubClassOf(obo:CL_0000760 obo:CL_0000748) +SubClassOf(obo:CL_0000760 obo:CL_0000752) SubClassOf(obo:CL_0000760 ObjectSomeValuesFrom(obo:RO_0002102 obo:UBERON_0008925)) SubClassOf(obo:CL_0000760 ObjectSomeValuesFrom(obo:RO_0002102 obo:UBERON_0008926)) -SubClassOf(obo:CL_0000760 ObjectSomeValuesFrom(obo:RO_0002103 obo:CL_0000573)) # Class: obo:CL_0000761 (type 9 cone bipolar cell (sensu Mus)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:14689473") obo:IAO_0000115 obo:CL_0000761 "An ON-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the inner half of the inner plexiform layer. The dendritic tree is wide and the dendritic convergence indicates cone selectivity. The axon terminal is sparsely branched and terminates in sublamina 5 of the inner plexiform layer.") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000761 "BB cone bipolar cell") AnnotationAssertion(rdfs:label obo:CL_0000761 "type 9 cone bipolar cell (sensu Mus)") -SubClassOf(obo:CL_0000761 obo:CL_0000748) +SubClassOf(obo:CL_0000761 obo:CL_0000752) SubClassOf(obo:CL_0000761 ObjectSomeValuesFrom(obo:RO_0002102 obo:UBERON_0008926)) -SubClassOf(obo:CL_0000761 ObjectSomeValuesFrom(obo:RO_0002103 obo:CL_0000573)) # Class: obo:CL_0000762 (nucleated thrombocyte) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:16360205") obo:IAO_0000115 obo:CL_0000762 "A nucleated blood cell involved in coagulation, typically seen in birds and other non-mammalian vertebrates.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000762 "ZFA:0009323") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000762 cl:blood_and_immune_upper_slim) AnnotationAssertion(rdfs:comment obo:CL_0000762 "Note that this is a non-mammalian cell type. Use platelet ; CL:0000233 for thrombocytes (platelets) in mammals.") AnnotationAssertion(rdfs:label obo:CL_0000762 "nucleated thrombocyte") EquivalentClasses(obo:CL_0000762 ObjectIntersectionOf(obo:CL_0000763 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001407) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0007596))) +SubClassOf(obo:CL_0000762 obo:CL_0000226) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000762 obo:CL_0000763) SubClassOf(obo:CL_0000762 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000828)) +SubClassOf(obo:CL_0000762 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0007596)) # Class: obo:CL_0000763 (myeloid cell) @@ -11491,10 +12569,13 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") obo:IAO_0000115 obo AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000763 "BTO:0001441") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000763 "CALOHA:TS-0647") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000763 "MESH:D022423") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000763 "ZFA:0009324") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000763 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000763 "myeloid cell") EquivalentClasses(obo:CL_0000763 ObjectIntersectionOf(obo:CL_0000988 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000049))) +SubClassOf(obo:CL_0000763 obo:BFO_0000002) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000763 obo:CL_0000988) +SubClassOf(obo:CL_0000763 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000049)) # Class: obo:CL_0000764 (erythroid lineage cell) @@ -11503,6 +12584,7 @@ AnnotationAssertion(obo:RO_0002175 obo:CL_0000764 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000764 "CALOHA:TS-0290") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000764 "FMA:62845") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000764 "FMA:83516") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000764 "ZFA:0009325") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000764 "erythropoietic cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000764 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000764 core:human_reference_atlas) @@ -11517,21 +12599,39 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000765 "BTO:0001571") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000765 "CALOHA:TS-0289") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000765 "FMA:83504") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000765 "MESH:D004900") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000765 "ZFA:0005237") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000765 "normoblast") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000765 cl:blood_and_immune_upper_slim) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000765 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000765 "erythroblast") EquivalentClasses(obo:CL_0000765 ObjectIntersectionOf(obo:CL_0000764 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0005634) ObjectSomeValuesFrom(obo:CL_4030045 obo:GO_0005730) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001024) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001083) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001839) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001889) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002978) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030218))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000765 obo:CL_0000764) +SubClassOf(obo:CL_0000765 obo:CL_0011026) +SubClassOf(obo:CL_0000765 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0005634)) +SubClassOf(obo:CL_0000765 ObjectSomeValuesFrom(obo:CL_4030045 obo:GO_0005730)) +SubClassOf(obo:CL_0000765 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002)) +SubClassOf(obo:CL_0000765 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004)) +SubClassOf(obo:CL_0000765 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012)) +SubClassOf(obo:CL_0000765 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020)) +SubClassOf(obo:CL_0000765 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001024)) +SubClassOf(obo:CL_0000765 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001083)) +SubClassOf(obo:CL_0000765 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084)) +SubClassOf(obo:CL_0000765 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289)) +SubClassOf(obo:CL_0000765 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001839)) +SubClassOf(obo:CL_0000765 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001889)) +SubClassOf(obo:CL_0000765 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002978)) SubClassOf(obo:CL_0000765 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000547)) +SubClassOf(obo:CL_0000765 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030218)) # Class: obo:CL_0000766 (myeloid leukocyte) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") obo:IAO_0000115 obo:CL_0000766 "A cell of the monocyte, granulocyte, or mast cell lineage.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000766 "ZFA:0009326") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000766 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000766 "myeloid leukocyte") EquivalentClasses(obo:CL_0000766 ObjectIntersectionOf(obo:CL_0000738 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000049))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000766 obo:CL_0000738) +SubClassOf(obo:CL_0000766 obo:CL_0000763) # Class: obo:CL_0000767 (basophil) @@ -11551,6 +12651,11 @@ AnnotationAssertion(rdfs:comment obo:CL_0000767 "Matures in the bone marrow and AnnotationAssertion(rdfs:label obo:CL_0000767 "basophil") EquivalentClasses(obo:CL_0000767 ObjectIntersectionOf(obo:CL_0000094 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001344) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001950) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001255) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001865) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000007431))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000767 obo:CL_0000094) +SubClassOf(obo:CL_0000767 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001344)) +SubClassOf(obo:CL_0000767 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001950)) +SubClassOf(obo:CL_0000767 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001255)) +SubClassOf(obo:CL_0000767 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001865)) +SubClassOf(obo:CL_0000767 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000007431)) # Class: obo:CL_0000768 (immature basophil) @@ -11560,6 +12665,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000768 "immature basophilic AnnotationAssertion(rdfs:label obo:CL_0000768 "immature basophil") EquivalentClasses(obo:CL_0000768 ObjectIntersectionOf(obo:CL_0000767 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017509))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000768 obo:CL_0000767) +SubClassOf(obo:CL_0000768 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017509)) SubClassOf(obo:CL_0000768 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000830)) # Class: obo:CL_0000769 (basophilic metamyelocyte) @@ -11570,6 +12676,15 @@ AnnotationAssertion(rdfs:label obo:CL_0000769 "basophilic metamyelocyte") EquivalentClasses(obo:CL_0000769 ObjectIntersectionOf(obo:CL_0000768 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017507) ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0000792) ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0042582) ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0070820) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001012) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001456) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001483) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001892) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001932) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002031))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000769 obo:CL_0000768) SubClassOf(obo:CL_0000769 obo:CL_0002192) +SubClassOf(obo:CL_0000769 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017507)) +SubClassOf(obo:CL_0000769 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0000792)) +SubClassOf(obo:CL_0000769 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0042582)) +SubClassOf(obo:CL_0000769 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0070820)) +SubClassOf(obo:CL_0000769 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001456)) +SubClassOf(obo:CL_0000769 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001483)) +SubClassOf(obo:CL_0000769 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001892)) +SubClassOf(obo:CL_0000769 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001932)) +SubClassOf(obo:CL_0000769 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002031)) SubClassOf(obo:CL_0000769 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000614)) # Class: obo:CL_0000770 (band form basophil) @@ -11578,6 +12693,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl AnnotationAssertion(rdfs:label obo:CL_0000770 "band form basophil") EquivalentClasses(obo:CL_0000770 ObjectIntersectionOf(obo:CL_0000768 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017506))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000770 obo:CL_0000768) +SubClassOf(obo:CL_0000770 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017506)) SubClassOf(obo:CL_0000770 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000769)) # Class: obo:CL_0000771 (eosinophil) @@ -11601,6 +12717,11 @@ AnnotationAssertion(rdfs:comment obo:CL_0000771 "Eosinophils are also CD14-negat AnnotationAssertion(rdfs:label obo:CL_0000771 "eosinophil") EquivalentClasses(obo:CL_0000771 ObjectIntersectionOf(obo:CL_0000094 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001254) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001255) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001307) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001343) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000005178))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000771 obo:CL_0000094) +SubClassOf(obo:CL_0000771 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001254)) +SubClassOf(obo:CL_0000771 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001255)) +SubClassOf(obo:CL_0000771 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001307)) +SubClassOf(obo:CL_0000771 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001343)) +SubClassOf(obo:CL_0000771 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000005178)) # Class: obo:CL_0000772 (immature eosinophil) @@ -11611,6 +12732,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000772 "immature eosinophil AnnotationAssertion(rdfs:label obo:CL_0000772 "immature eosinophil") EquivalentClasses(obo:CL_0000772 ObjectIntersectionOf(obo:CL_0000771 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017509))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000772 obo:CL_0000771) +SubClassOf(obo:CL_0000772 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017509)) SubClassOf(obo:CL_0000772 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000833)) # Class: obo:CL_0000773 (eosinophilic metamyelocyte) @@ -11620,6 +12742,16 @@ AnnotationAssertion(rdfs:label obo:CL_0000773 "eosinophilic metamyelocyte") EquivalentClasses(obo:CL_0000773 ObjectIntersectionOf(obo:CL_0000772 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017502) ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017507) ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0000792) ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0042582) ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0070820) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001012) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001456) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001483) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001892) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001932) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002031))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000773 obo:CL_0000772) SubClassOf(obo:CL_0000773 obo:CL_0002192) +SubClassOf(obo:CL_0000773 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017502)) +SubClassOf(obo:CL_0000773 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017507)) +SubClassOf(obo:CL_0000773 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0000792)) +SubClassOf(obo:CL_0000773 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0042582)) +SubClassOf(obo:CL_0000773 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0070820)) +SubClassOf(obo:CL_0000773 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001456)) +SubClassOf(obo:CL_0000773 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001483)) +SubClassOf(obo:CL_0000773 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001892)) +SubClassOf(obo:CL_0000773 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001932)) +SubClassOf(obo:CL_0000773 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002031)) SubClassOf(obo:CL_0000773 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000612)) # Class: obo:CL_0000774 (band form eosinophil) @@ -11628,6 +12760,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl AnnotationAssertion(rdfs:label obo:CL_0000774 "band form eosinophil") EquivalentClasses(obo:CL_0000774 ObjectIntersectionOf(obo:CL_0000772 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017506))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000774 obo:CL_0000772) +SubClassOf(obo:CL_0000774 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017506)) SubClassOf(obo:CL_0000774 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000773)) # Class: obo:CL_0000775 (neutrophil) @@ -11645,6 +12778,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000775 "BTO:0000130") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000775 "CALOHA:TS-0688") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000775 "FMA:62860") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000775 "MESH:D009504") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000775 "ZFA:0009327") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000775 "neutrocyte") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000775 "neutrophil leucocyte") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000775 "neutrophil leukocyte") @@ -11656,10 +12790,13 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000775 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000775 "neutrophil") EquivalentClasses(obo:CL_0000775 ObjectIntersectionOf(obo:CL_0000094 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001479) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001879))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000775 obo:CL_0000094) +SubClassOf(obo:CL_0000775 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001479)) +SubClassOf(obo:CL_0000775 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001879)) # Class: obo:CL_0000776 (immature neutrophil) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "ISBN:0721601464") obo:IAO_0000115 obo:CL_0000776 "Any of the immature forms of a neutrophil in which neutrophilic specific granules are present but other phenotypic features of the mature form may be lacking.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000776 "ZFA:0009328") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000776 "immatuer neutrophilic leukocyte") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000776 "immature neutrocyte") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000776 "immature neutrophil leucocyte") @@ -11669,6 +12806,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000776 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000776 "immature neutrophil") EquivalentClasses(obo:CL_0000776 ObjectIntersectionOf(obo:CL_0000775 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017509))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000776 obo:CL_0000775) +SubClassOf(obo:CL_0000776 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017509)) SubClassOf(obo:CL_0000776 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000564)) # Class: obo:CL_0000777 (mesangial phagocyte) @@ -11678,14 +12816,18 @@ AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000777 "mesangial cell") AnnotationAssertion(rdfs:label obo:CL_0000777 "mesangial phagocyte") EquivalentClasses(obo:CL_0000777 ObjectIntersectionOf(obo:CL_0000864 ObjectSomeValuesFrom(obo:RO_0001025 obo:UBERON_0002320) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0019882) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0048771))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000777 obo:CL_0000864) +SubClassOf(obo:CL_0000777 ObjectSomeValuesFrom(obo:RO_0001025 obo:UBERON_0002320)) +SubClassOf(obo:CL_0000777 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0048771)) # Class: obo:CL_0000778 (mononuclear osteoclast) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:12713016") Annotation(oboInOwl:hasDbXref "PMID:15055519") Annotation(oboInOwl:hasDbXref "PMID:17380158") Annotation(oboInOwl:hasDbXref "PMID:9415452") obo:IAO_0000115 obo:CL_0000778 "A specialized mononuclear osteoclast associated with the absorption and removal of bone, precursor of multinuclear osteoclasts.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000778 "ZFA:0009329") AnnotationAssertion(rdfs:comment obo:CL_0000778 "Morphology: mononuclear, highly vesicular.") AnnotationAssertion(rdfs:label obo:CL_0000778 "mononuclear osteoclast") EquivalentClasses(obo:CL_0000778 ObjectIntersectionOf(obo:CL_0000092 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001407))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000778 obo:CL_0000092) +SubClassOf(obo:CL_0000778 obo:CL_0000113) # Class: obo:CL_0000779 (multinuclear osteoclast) @@ -11695,6 +12837,7 @@ AnnotationAssertion(rdfs:comment obo:CL_0000779 "Morphology: multinucleated, hig AnnotationAssertion(rdfs:label obo:CL_0000779 "multinuclear osteoclast") EquivalentClasses(obo:CL_0000779 ObjectIntersectionOf(obo:CL_0000092 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001908))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000779 obo:CL_0000092) +SubClassOf(obo:CL_0000779 obo:CL_0000783) SubClassOf(obo:CL_0000779 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000778)) # Class: obo:CL_0000780 (multinuclear odontoclast) @@ -11705,11 +12848,13 @@ AnnotationAssertion(rdfs:comment obo:CL_0000780 "Morphology: multinucleated, hig AnnotationAssertion(rdfs:label obo:CL_0000780 "multinuclear odontoclast") EquivalentClasses(obo:CL_0000780 ObjectIntersectionOf(obo:CL_0000588 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001908))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000780 obo:CL_0000588) +SubClassOf(obo:CL_0000780 obo:CL_0000779) SubClassOf(obo:CL_0000780 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000781)) # Class: obo:CL_0000781 (mononuclear odontoclast) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "PMID:9415452") obo:IAO_0000115 obo:CL_0000781 "A specialized mononuclear osteoclast associated with the absorption and removal of cementum.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000781 "ZFA:0009330") AnnotationAssertion(rdfs:comment obo:CL_0000781 "Morphology: Mononuclear, highly vesicular; location: roots of deciduous (milk) teeth.") AnnotationAssertion(rdfs:label obo:CL_0000781 "mononuclear odontoclast") EquivalentClasses(obo:CL_0000781 ObjectIntersectionOf(obo:CL_0000588 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001407))) @@ -11728,13 +12873,17 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000782 cl:cellxgene_subset) AnnotationAssertion(rdfs:comment obo:CL_0000782 "These cells are CD1a-negative, CD1b-positive, CD11a-positive, CD11c-positive, CD13-positive, CD14-negative, CD20-negative, CD21-negative, CD33-positive, CD40-negative, CD50-positive, CD54-positive, CD58-positive, CD68-negative, CD80-negative, CD83-negative, CD85j-positive, CD86-positive, CD89-negative, CD95-positive, CD120a-negative, CD120b-positive, CD123-negative, CD178-negative, CD206-negative, CD207-negative, CD209-negative, and TNF-alpha-negative. Upon TLR stimulation, they are capable of producing high levels of TNF-alpha, IL-6, CXCL8 (IL-8).") AnnotationAssertion(rdfs:label obo:CL_0000782 "myeloid dendritic cell") EquivalentClasses(obo:CL_0000782 ObjectIntersectionOf(obo:CL_0000990 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001865) ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000763))) +SubClassOf(obo:CL_0000782 obo:CL_0000766) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000782 obo:CL_0000990) +SubClassOf(obo:CL_0000782 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001865)) +SubClassOf(obo:CL_0000782 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000763)) # Class: obo:CL_0000783 (multinucleated phagocyte) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0000783 "A phagocyte formed by the fusion of mononuclear phagocytes.") AnnotationAssertion(rdfs:label obo:CL_0000783 "multinucleated phagocyte") EquivalentClasses(obo:CL_0000783 ObjectIntersectionOf(obo:CL_0000518 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001908))) +SubClassOf(obo:CL_0000783 obo:CL_0000228) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000783 obo:CL_0000518) # Class: obo:CL_0000784 (plasmacytoid dendritic cell) @@ -11757,11 +12906,12 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000784 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000784 "plasmacytoid dendritic cell") EquivalentClasses(obo:CL_0000784 ObjectIntersectionOf(obo:CL_0000451 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032606))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000784 obo:CL_0000451) -SubClassOf(obo:CL_0000784 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000037)) +SubClassOf(obo:CL_0000784 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032606)) # Class: obo:CL_0000785 (mature B cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "GOC:dsd") Annotation(oboInOwl:hasDbXref "ISBN:0781735149") obo:IAO_0000115 obo:CL_0000785 "A B cell that is mature, having left the bone marrow. Initially, these cells are IgM-positive and IgD-positive, and they can be activated by antigen.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000785 "ZFA:0009331") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000785 "mature B lymphocyte") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000785 "mature B-cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000785 "mature B-lymphocyte") @@ -11769,8 +12919,11 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000785 cl:cellxgene_subset) AnnotationAssertion(rdfs:comment obo:CL_0000785 "Mature B cells are also reportedly CD10-negative, CD19-positive, CD22-positive, CD34-negative, CD48-positive, CD79a-positive, CD84-positive, CD127-negative, CD352-positive, RAG-negative, TdT-negative, Vpre-B-negative, and pre-BCR-negative. Transcription factors expressed: Pax5-positive.") AnnotationAssertion(rdfs:label obo:CL_0000785 "mature B cell") EquivalentClasses(obo:CL_0000785 ObjectIntersectionOf(obo:CL_0001201 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002504) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0042113) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0002335))) +SubClassOf(obo:CL_0000785 obo:CL_0000145) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000785 obo:CL_0001201) SubClassOf(obo:CL_0000785 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000818)) +SubClassOf(obo:CL_0000785 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0042113)) +SubClassOf(obo:CL_0000785 ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0002335)) DisjointClasses(obo:CL_0000785 obo:CL_0000816) DisjointClasses(obo:CL_0000785 obo:CL_0000817) DisjointClasses(obo:CL_0000785 obo:CL_0000818) @@ -11782,6 +12935,7 @@ AnnotationAssertion(obo:RO_0002175 obo:CL_0000786 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000786 "BTO:0000392") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000786 "FMA:70574") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000786 "MESH:D010950") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000786 "ZFA:0009332") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000786 "plasma B cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000786 "plasma B-cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000786 "plasmacyte") @@ -11795,12 +12949,19 @@ AnnotationAssertion(rdfs:comment obo:CL_0000786 "Plasma cells develop in the spl AnnotationAssertion(rdfs:label obo:CL_0000786 "plasma cell") EquivalentClasses(obo:CL_0000786 ObjectIntersectionOf(obo:CL_0000946 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017508) ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0005794) ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0019814) ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0042613) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001935))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000786 obo:CL_0000946) +SubClassOf(obo:CL_0000786 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017508)) +SubClassOf(obo:CL_0000786 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0005794)) +SubClassOf(obo:CL_0000786 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0019814)) +SubClassOf(obo:CL_0000786 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0042613)) +SubClassOf(obo:CL_0000786 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289)) +SubClassOf(obo:CL_0000786 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001935)) SubClassOf(obo:CL_0000786 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000980)) # Class: obo:CL_0000787 (memory B cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "GOC:dsd") Annotation(oboInOwl:hasDbXref "GOC:rhs") Annotation(oboInOwl:hasDbXref "GO_REF:0000031") Annotation(oboInOwl:hasDbXref "ISBN:0781735149") Annotation(oboInOwl:hasDbXref "PMID:20081059") Annotation(oboInOwl:hasDbXref "PMID:20839338") Annotation(oboInOwl:hasDbXref "http://en.wikipedia.org/wiki/Memory_B_cell") obo:IAO_0000115 obo:CL_0000787 "A memory B cell is a mature B cell that is long-lived, readily activated upon re-encounter of its antigenic determinant, and has been selected for expression of higher affinity immunoglobulin. This cell type has the phenotype CD19-positive, CD20-positive, MHC Class II-positive, and CD138-negative.") AnnotationAssertion(obo:RO_0002175 obo:CL_0000787 obo:NCBITaxon_9606) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000787 "ZFA:0009333") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000787 "memory B lymphocyte") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000787 "memory B-cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000787 "memory B-lymphocyte") @@ -11810,11 +12971,16 @@ AnnotationAssertion(rdfs:comment obo:CL_0000787 "Memory B-cells are also reporte AnnotationAssertion(rdfs:label obo:CL_0000787 "memory B cell") EquivalentClasses(obo:CL_0000787 ObjectIntersectionOf(obo:CL_0000785 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001935) ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0042613) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001289) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0002344))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000787 obo:CL_0000785) +SubClassOf(obo:CL_0000787 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001935)) +SubClassOf(obo:CL_0000787 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0042613)) +SubClassOf(obo:CL_0000787 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001289)) +SubClassOf(obo:CL_0000787 ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0002344)) # Class: obo:CL_0000788 (naive B cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "GOC:dsd") Annotation(oboInOwl:hasDbXref "GOC:rhs") Annotation(oboInOwl:hasDbXref "GO_REF:0000031") Annotation(oboInOwl:hasDbXref "ISBN:0781765196") Annotation(oboInOwl:hasDbXref "PMID:19447676") Annotation(oboInOwl:hasDbXref "PMID:20081059") Annotation(oboInOwl:hasDbXref "PMID:20839338") Annotation(oboInOwl:hasDbXref "PMID:20933013") Annotation(oboInOwl:hasDbXref "PMID:22343568") obo:IAO_0000115 obo:CL_0000788 "A naive B cell is a mature B cell that has the phenotype surface IgD-positive, surface IgM-positive, CD20-positive, CD27-negative and that has not yet been activated by antigen in the periphery.") AnnotationAssertion(obo:RO_0002175 obo:CL_0000788 obo:NCBITaxon_9606) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000788 "ZFA:0009334") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000788 "naive B lymphocyte") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000788 "naive B-cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000788 "naive B-lymphocyte") @@ -11824,11 +12990,16 @@ AnnotationAssertion(rdfs:comment obo:CL_0000788 "This cell type is compatible wi AnnotationAssertion(rdfs:label obo:CL_0000788 "naive B cell") EquivalentClasses(obo:CL_0000788 ObjectIntersectionOf(obo:CL_0000785 ObjectSomeValuesFrom(obo:CL_4030044 obo:GO_0002344) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001963) ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071738) ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071753) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001289))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000788 obo:CL_0000785) -SubClassOf(obo:CL_0000788 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000818)) +SubClassOf(obo:CL_0000788 ObjectSomeValuesFrom(obo:CL_4030044 obo:GO_0002344)) +SubClassOf(obo:CL_0000788 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001963)) +SubClassOf(obo:CL_0000788 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071738)) +SubClassOf(obo:CL_0000788 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071753)) +SubClassOf(obo:CL_0000788 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001289)) # Class: obo:CL_0000789 (alpha-beta T cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0781735149") obo:IAO_0000115 obo:CL_0000789 "A T cell that expresses an alpha-beta T cell receptor complex.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000789 "ZFA:0009335") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000789 "alpha-beta T lymphocyte") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000789 "alpha-beta T-cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000789 "alpha-beta T-lymphocyte") @@ -11837,6 +13008,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000789 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000789 "alpha-beta T cell") EquivalentClasses(obo:CL_0000789 ObjectIntersectionOf(obo:CL_0000084 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0042105))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000789 obo:CL_0000084) +SubClassOf(obo:CL_0000789 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0042105)) DisjointClasses(obo:CL_0000789 obo:CL_0000798) # Class: obo:CL_0000790 (immature alpha-beta T cell) @@ -11849,6 +13021,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000790 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000790 "immature alpha-beta T cell") EquivalentClasses(obo:CL_0000790 ObjectIntersectionOf(obo:CL_0000789 ObjectSomeValuesFrom(obo:CL_4030044 obo:GO_0045058))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000790 obo:CL_0000789) +SubClassOf(obo:CL_0000790 obo:CL_0002420) # Class: obo:CL_0000791 (mature alpha-beta T cell) @@ -11860,6 +13033,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000791 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000791 "mature alpha-beta T cell") EquivalentClasses(obo:CL_0000791 ObjectIntersectionOf(obo:CL_0000789 ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0045058))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000791 obo:CL_0000789) +SubClassOf(obo:CL_0000791 obo:CL_0002419) SubClassOf(obo:CL_0000791 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000790)) # Class: obo:CL_0000792 (CD4-positive, CD25-positive, alpha-beta regulatory T cell) @@ -11878,6 +13052,9 @@ AnnotationAssertion(rdfs:comment obo:CL_0000792 "This cell type is compatible wi AnnotationAssertion(rdfs:label obo:CL_0000792 "CD4-positive, CD25-positive, alpha-beta regulatory T cell") EquivalentClasses(obo:CL_0000792 ObjectIntersectionOf(obo:CL_0000624 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001380) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050777) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001869))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000792 obo:CL_0000624) +SubClassOf(obo:CL_0000792 obo:CL_0000815) +SubClassOf(obo:CL_0000792 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001380)) +SubClassOf(obo:CL_0000792 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001869)) # Class: obo:CL_0000793 (CD4-positive, alpha-beta intraepithelial T cell) @@ -11892,6 +13069,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000793 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000793 "CD4-positive, alpha-beta intraepithelial T cell") EquivalentClasses(obo:CL_0000793 ObjectIntersectionOf(obo:CL_0000624 ObjectSomeValuesFrom(obo:RO_0001025 obo:UBERON_0001277) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002385))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000793 obo:CL_0000624) +SubClassOf(obo:CL_0000793 obo:CL_0000797) SubClassOf(obo:CL_0000793 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000810)) # Class: obo:CL_0000794 (CD8-positive, alpha-beta cytotoxic T cell) @@ -11916,7 +13094,12 @@ AnnotationAssertion(rdfs:comment obo:CL_0000794 "Note that while T cells of this AnnotationAssertion(rdfs:label obo:CL_0000794 "CD8-positive, alpha-beta cytotoxic T cell") EquivalentClasses(obo:CL_0000794 ObjectIntersectionOf(obo:CL_0000625 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000003466) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000003499) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001913) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0033380) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0030217))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000794 obo:CL_0000625) +SubClassOf(obo:CL_0000794 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000003466)) +SubClassOf(obo:CL_0000794 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000003499)) SubClassOf(obo:CL_0000794 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000906)) +SubClassOf(obo:CL_0000794 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001913)) +SubClassOf(obo:CL_0000794 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0033380)) +SubClassOf(obo:CL_0000794 ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0030217)) # Class: obo:CL_0000795 (CD8-positive, alpha-beta regulatory T cell) @@ -11937,6 +13120,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000795 "CD8-positive, alpha AnnotationAssertion(rdfs:label obo:CL_0000795 "CD8-positive, alpha-beta regulatory T cell") EquivalentClasses(obo:CL_0000795 ObjectIntersectionOf(obo:CL_0000625 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050777))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000795 obo:CL_0000625) +SubClassOf(obo:CL_0000795 obo:CL_0000815) # Class: obo:CL_0000796 (CD8-alpha-beta-positive, alpha-beta intraepithelial T cell) @@ -11952,6 +13136,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000796 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000796 "CD8-alpha-beta-positive, alpha-beta intraepithelial T cell") EquivalentClasses(obo:CL_0000796 ObjectIntersectionOf(obo:CL_0000797 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000025402))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000796 obo:CL_0000797) +SubClassOf(obo:CL_0000796 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000025402)) # Class: obo:CL_0000797 (alpha-beta intraepithelial T cell) @@ -11964,11 +13149,13 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000797 "alpha-beta intraepi AnnotationAssertion(rdfs:label obo:CL_0000797 "alpha-beta intraepithelial T cell") EquivalentClasses(obo:CL_0000797 ObjectIntersectionOf(obo:CL_0000791 ObjectSomeValuesFrom(obo:RO_0001025 obo:UBERON_0001277) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002385))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000797 obo:CL_0000791) +SubClassOf(obo:CL_0000797 obo:CL_0002496) # Class: obo:CL_0000798 (gamma-delta T cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0781735149") obo:IAO_0000115 obo:CL_0000798 "A T cell that expresses a gamma-delta T cell receptor complex.") AnnotationAssertion(obo:RO_0002175 obo:CL_0000798 obo:NCBITaxon_9606) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000798 "ZFA:0009336") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000798 "gamma-delta T lymphocyte") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000798 "gamma-delta T-cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000798 "gamma-delta T-lymphocyte") @@ -11981,10 +13168,12 @@ AnnotationAssertion(rdfs:comment obo:CL_0000798 "Note that gamma-delta T cells h AnnotationAssertion(rdfs:label obo:CL_0000798 "gamma-delta T cell") EquivalentClasses(obo:CL_0000798 ObjectIntersectionOf(obo:CL_0000084 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0042106))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000798 obo:CL_0000084) +SubClassOf(obo:CL_0000798 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0042106)) # Class: obo:CL_0000799 (immature gamma-delta T cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "ISBN:0781735149") obo:IAO_0000115 obo:CL_0000799 "A gamma-delta T cell that has an immature phenotype.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000799 "ZFA:0009337") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000799 "immature gamma-delta T lymphocyte") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000799 "immature gamma-delta T-cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000799 "immature gamma-delta T-lymphocyte") @@ -11992,11 +13181,14 @@ AnnotationAssertion(rdfs:comment obo:CL_0000799 "Note that gamma-delta T cells h AnnotationAssertion(rdfs:label obo:CL_0000799 "immature gamma-delta T cell") EquivalentClasses(obo:CL_0000799 ObjectIntersectionOf(obo:CL_0000798 ObjectSomeValuesFrom(obo:CL_4030044 obo:GO_0042492) ObjectSomeValuesFrom(obo:CL_4030044 obo:GO_0045058))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000799 obo:CL_0000798) +SubClassOf(obo:CL_0000799 obo:CL_0002420) +SubClassOf(obo:CL_0000799 ObjectSomeValuesFrom(obo:CL_4030044 obo:GO_0042492)) SubClassOf(obo:CL_0000799 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000807)) # Class: obo:CL_0000800 (mature gamma-delta T cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0781735149") obo:IAO_0000115 obo:CL_0000800 "A gamma-delta T cell that has a mature phenotype. These cells can be found in tissues and circulation where they express unique TCR repertoire depending on their location.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000800 "ZFA:0009338") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000800 "mature gamma-delta T lymphocyte") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000800 "mature gamma-delta T-cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000800 "mature gamma-delta T-lymphocyte") @@ -12004,6 +13196,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000800 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000800 "mature gamma-delta T cell") EquivalentClasses(obo:CL_0000800 ObjectIntersectionOf(obo:CL_0000798 ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0045058))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000800 obo:CL_0000798) +SubClassOf(obo:CL_0000800 obo:CL_0002419) SubClassOf(obo:CL_0000800 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000799)) # Class: obo:CL_0000801 (gamma-delta intraepithelial T cell) @@ -12011,12 +13204,14 @@ SubClassOf(obo:CL_0000800 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000799)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0781735149") obo:IAO_0000115 obo:CL_0000801 "A mature gamma-delta T cell that is found in the columnar epithelium of the gastrointestinal tract. These cells participate in mucosal immune responses.") AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000801 "IEL") AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000801 "intraepithelial lymphocyte") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000801 "ZFA:0009339") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000801 "gamma-delta intraepithelial T lymphocyte") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000801 "gamma-delta intraepithelial T-cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000801 "gamma-delta intraepithelial T-lymphocyte") AnnotationAssertion(rdfs:label obo:CL_0000801 "gamma-delta intraepithelial T cell") EquivalentClasses(obo:CL_0000801 ObjectIntersectionOf(obo:CL_0000800 ObjectSomeValuesFrom(obo:RO_0001025 obo:UBERON_0001277) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002385))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000801 obo:CL_0000800) +SubClassOf(obo:CL_0000801 obo:CL_0002496) # Class: obo:CL_0000802 (CD8-alpha alpha positive, gamma-delta intraepithelial T cell) @@ -12032,6 +13227,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000802 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000802 "CD8-alpha alpha positive, gamma-delta intraepithelial T cell") EquivalentClasses(obo:CL_0000802 ObjectIntersectionOf(obo:CL_0000801 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001084))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000802 obo:CL_0000801) +SubClassOf(obo:CL_0000802 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001084)) # Class: obo:CL_0000803 (CD4-negative CD8-negative gamma-delta intraepithelial T cell) @@ -12044,6 +13240,8 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000803 "CD4-positive, gamma AnnotationAssertion(rdfs:label obo:CL_0000803 "CD4-negative CD8-negative gamma-delta intraepithelial T cell") EquivalentClasses(obo:CL_0000803 ObjectIntersectionOf(obo:CL_0000801 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000803 obo:CL_0000801) +SubClassOf(obo:CL_0000803 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004)) +SubClassOf(obo:CL_0000803 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084)) # Class: obo:CL_0000804 (obo:CL_0000804) @@ -12063,7 +13261,13 @@ AnnotationAssertion(rdfs:comment obo:CL_0000805 "Note that this type of thymocyt AnnotationAssertion(rdfs:label obo:CL_0000805 "immature single positive thymocyte") EquivalentClasses(obo:CL_0000805 ObjectIntersectionOf(obo:CL_0000893 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001307) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001380) ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0043384) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000025402) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001932))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000805 obo:CL_0000893) +SubClassOf(obo:CL_0000805 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004)) +SubClassOf(obo:CL_0000805 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001307)) +SubClassOf(obo:CL_0000805 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001380)) +SubClassOf(obo:CL_0000805 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0043384)) +SubClassOf(obo:CL_0000805 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000025402)) SubClassOf(obo:CL_0000805 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000808)) +SubClassOf(obo:CL_0000805 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001932)) # Class: obo:CL_0000806 (DN2 thymocyte) @@ -12080,6 +13284,9 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000806 "preT.DN2.Th") AnnotationAssertion(rdfs:comment obo:CL_0000806 "Note that this type of thymocyte is at the earliest stage of T cell receptor rearrangement of the beta, gamma, and delta T cell receptor chains. Also, there is growing evidence that molecular markers characterizing double negative thymocytes are different across species, especially in mouse versus human thymus. If in doubt, please consider using CL:0002489 'double negative thymocyte'.") AnnotationAssertion(rdfs:label obo:CL_0000806 "DN2 thymocyte") EquivalentClasses(obo:CL_0000806 ObjectIntersectionOf(obo:CL_0000893 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000025402) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001307) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001380))) +SubClassOf(obo:CL_0000806 obo:CL_0002489) +SubClassOf(obo:CL_0000806 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001307)) +SubClassOf(obo:CL_0000806 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001380)) SubClassOf(obo:CL_0000806 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000894)) # Class: obo:CL_0000807 (DN3 thymocyte) @@ -12099,6 +13306,10 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000807 cl:cellxgene_subset) AnnotationAssertion(rdfs:comment obo:CL_0000807 "There is growing evidence that molecular markers characterizing double negative thymocytes are different across species, especially in mouse versus human thymus. If in doubt, please consider using CL:0002489 'double negative thymocyte'.") AnnotationAssertion(rdfs:label obo:CL_0000807 "DN3 thymocyte") EquivalentClasses(obo:CL_0000807 ObjectIntersectionOf(obo:CL_0000893 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001307) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000025402) ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0043384) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001380))) +SubClassOf(obo:CL_0000807 obo:CL_0002489) +SubClassOf(obo:CL_0000807 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001307)) +SubClassOf(obo:CL_0000807 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0043384)) +SubClassOf(obo:CL_0000807 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001380)) SubClassOf(obo:CL_0000807 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000806)) # Class: obo:CL_0000808 (DN4 thymocyte) @@ -12116,6 +13327,10 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000808 cl:cellxgene_subset) AnnotationAssertion(rdfs:comment obo:CL_0000808 "Note that this type of thymocyte has passed the beta-selection checkpoint and is rapidly proliferating and beginning to rearrange the T cell receptor alpha chain. There is growing evidence that molecular markers characterizing double negative thymocytes are different across species, especially in mouse versus human thymus. If in doubt, please consider using CL:0002489 'double negative thymocyte'.") AnnotationAssertion(rdfs:label obo:CL_0000808 "DN4 thymocyte") EquivalentClasses(obo:CL_0000808 ObjectIntersectionOf(obo:CL_0000893 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001307) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001380) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000025402) ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0043384))) +SubClassOf(obo:CL_0000808 obo:CL_0002489) +SubClassOf(obo:CL_0000808 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001307)) +SubClassOf(obo:CL_0000808 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001380)) +SubClassOf(obo:CL_0000808 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0043384)) SubClassOf(obo:CL_0000808 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000807)) # Class: obo:CL_0000809 (double-positive, alpha-beta thymocyte) @@ -12132,6 +13347,9 @@ AnnotationAssertion(rdfs:comment obo:CL_0000809 "Thymocytes of this stage are un AnnotationAssertion(rdfs:label obo:CL_0000809 "double-positive, alpha-beta thymocyte") EquivalentClasses(obo:CL_0000809 ObjectIntersectionOf(obo:CL_0000790 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002370) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001004) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000025402))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000809 obo:CL_0000790) +SubClassOf(obo:CL_0000809 obo:CL_0000893) +SubClassOf(obo:CL_0000809 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001004)) +SubClassOf(obo:CL_0000809 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000025402)) SubClassOf(obo:CL_0000809 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000805)) # Class: obo:CL_0000810 (CD4-positive, alpha-beta thymocyte) @@ -12145,6 +13363,9 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000810 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000810 "CD4-positive, alpha-beta thymocyte") EquivalentClasses(obo:CL_0000810 ObjectIntersectionOf(obo:CL_0000790 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002370) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001004))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000810 obo:CL_0000790) +SubClassOf(obo:CL_0000810 obo:CL_0000893) +SubClassOf(obo:CL_0000810 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084)) +SubClassOf(obo:CL_0000810 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001004)) SubClassOf(obo:CL_0000810 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000809)) # Class: obo:CL_0000811 (CD8-positive, alpha-beta thymocyte) @@ -12159,6 +13380,9 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000811 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000811 "CD8-positive, alpha-beta thymocyte") EquivalentClasses(obo:CL_0000811 ObjectIntersectionOf(obo:CL_0000790 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002370) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000025402))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000811 obo:CL_0000790) +SubClassOf(obo:CL_0000811 obo:CL_0000893) +SubClassOf(obo:CL_0000811 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004)) +SubClassOf(obo:CL_0000811 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000025402)) SubClassOf(obo:CL_0000811 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000809)) # Class: obo:CL_0000812 (obo:CL_0000812) @@ -12171,6 +13395,7 @@ AnnotationAssertion(owl:deprecated obo:CL_0000812 "true"^^xsd:boolean) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "GOC:pam") Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "GO_REF:0000031") Annotation(oboInOwl:hasDbXref "ISBN:0781735149") obo:IAO_0000115 obo:CL_0000813 "A long-lived, antigen-experienced T cell that has acquired a memory phenotype including distinct surface markers and the ability to differentiate into an effector T cell upon antigen reexposure.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000813 "BTO:0003435") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000813 "ZFA:0009342") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000813 "memory T lymphocyte") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000813 "memory T-cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000813 "memory T-lymphocyte") @@ -12178,6 +13403,8 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000813 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000813 "memory T cell") EquivalentClasses(obo:CL_0000813 ObjectIntersectionOf(obo:CL_0002419 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001603) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0002286) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0043379))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000813 obo:CL_0002419) +SubClassOf(obo:CL_0000813 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001603)) +SubClassOf(obo:CL_0000813 ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0043379)) DisjointClasses(obo:CL_0000813 obo:CL_0000898) # Class: obo:CL_0000814 (mature NK T cell) @@ -12197,7 +13424,11 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000814 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000814 "mature NK T cell") EquivalentClasses(obo:CL_0000814 ObjectIntersectionOf(obo:CL_0000791 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001874) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032394) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045087) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0030217))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000814 obo:CL_0000791) +SubClassOf(obo:CL_0000814 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001874)) SubClassOf(obo:CL_0000814 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002042)) +SubClassOf(obo:CL_0000814 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032394)) +SubClassOf(obo:CL_0000814 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045087)) +SubClassOf(obo:CL_0000814 ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0030217)) # Class: obo:CL_0000815 (regulatory T cell) @@ -12220,11 +13451,13 @@ AnnotationAssertion(rdfs:comment obo:CL_0000815 "This cell type may express FoxP AnnotationAssertion(rdfs:label obo:CL_0000815 "regulatory T cell") EquivalentClasses(obo:CL_0000815 ObjectIntersectionOf(obo:CL_0002419 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050777))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000815 obo:CL_0002419) +SubClassOf(obo:CL_0000815 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050777)) # Class: obo:CL_0000816 (immature B cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "GOC:dsd") Annotation(oboInOwl:hasDbXref "GOC:rhs") Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "GO_REF:0000031") Annotation(oboInOwl:hasDbXref "ISBN:0781735149") Annotation(oboInOwl:hasDbXref "PMID:20081059") Annotation(oboInOwl:hasDbXref "PMID:20839338") obo:IAO_0000115 obo:CL_0000816 "An immature B cell is a B cell that has the phenotype surface IgM-positive and surface IgD-negative, and have not undergone class immunoglobulin class switching or peripheral encounter with antigen and activation.") AnnotationAssertion(obo:RO_0002175 obo:CL_0000816 obo:NCBITaxon_9606) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000816 "ZFA:0009343") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000816 "immature B lymphocyte") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000816 "immature B-cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000816 "immature B-lymphocyte") @@ -12236,6 +13469,10 @@ AnnotationAssertion(rdfs:comment obo:CL_0000816 "Immature B cells are also repor AnnotationAssertion(rdfs:label obo:CL_0000816 "immature B cell") EquivalentClasses(obo:CL_0000816 ObjectIntersectionOf(obo:CL_0001201 ObjectSomeValuesFrom(obo:CL_4030044 obo:GO_0045190) ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0071738) ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071753) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001289))) SubClassOf(obo:CL_0000816 obo:CL_0001201) +SubClassOf(obo:CL_0000816 ObjectSomeValuesFrom(obo:CL_4030044 obo:GO_0045190)) +SubClassOf(obo:CL_0000816 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0071738)) +SubClassOf(obo:CL_0000816 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071753)) +SubClassOf(obo:CL_0000816 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001289)) SubClassOf(obo:CL_0000816 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000954)) # Class: obo:CL_0000817 (precursor B cell) @@ -12244,18 +13481,22 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:rhs") Annotation(oboInOwl AnnotationAssertion(obo:RO_0002175 obo:CL_0000817 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000817 "BTO:0001133") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000817 "CALOHA:TS-0819") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000817 "ZFA:0009344") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000817 "pre-B cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000817 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000817 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000817 "precursor B cell") EquivalentClasses(obo:CL_0000817 ObjectIntersectionOf(obo:CL_0001201 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0071753) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001898))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000817 obo:CL_0001201) +SubClassOf(obo:CL_0000817 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0071753)) +SubClassOf(obo:CL_0000817 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001898)) DisjointClasses(obo:CL_0000817 obo:CL_0000826) # Class: obo:CL_0000818 (transitional stage B cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "GO_REF:0000031") Annotation(oboInOwl:hasDbXref "ISBN:0781735149") Annotation(oboInOwl:hasDbXref "PMID:12810111") Annotation(oboInOwl:hasDbXref "PMID:22343568") obo:IAO_0000115 obo:CL_0000818 "An immature B cell of an intermediate stage between the pre-B cell stage and the mature naive stage with the phenotype surface IgM-positive and CD19-positive, and are subject to the process of B cell selection. A transitional B cell migrates from the bone marrow into the peripheral circulation, and then to the spleen.") AnnotationAssertion(obo:RO_0002175 obo:CL_0000818 obo:NCBITaxon_9606) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000818 "ZFA:0009345") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:22343568") oboInOwl:hasExactSynonym obo:CL_0000818 "transitional B cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000818 "transitional stage B lymphocyte") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000818 "transitional stage B-cell") @@ -12269,7 +13510,12 @@ AnnotationAssertion(rdfs:comment obo:CL_0000818 "This cell type is compatible wi AnnotationAssertion(rdfs:label obo:CL_0000818 "transitional stage B cell") EquivalentClasses(obo:CL_0000818 ObjectIntersectionOf(obo:CL_0001201 ObjectSomeValuesFrom(obo:CL_4030044 obo:GO_0002335) ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071753) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001289) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001408) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001932))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000818 obo:CL_0001201) +SubClassOf(obo:CL_0000818 ObjectSomeValuesFrom(obo:CL_4030044 obo:GO_0002335)) +SubClassOf(obo:CL_0000818 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071753)) +SubClassOf(obo:CL_0000818 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001289)) SubClassOf(obo:CL_0000818 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000816)) +SubClassOf(obo:CL_0000818 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001408)) +SubClassOf(obo:CL_0000818 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001932)) # Class: obo:CL_0000819 (B-1 B cell) @@ -12288,6 +13534,11 @@ AnnotationAssertion(rdfs:comment obo:CL_0000819 "There are small numbers of B-1 AnnotationAssertion(rdfs:label obo:CL_0000819 "B-1 B cell") EquivalentClasses(obo:CL_0000819 ObjectIntersectionOf(obo:CL_0000785 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001014) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001289) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001879) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045087) ObjectSomeValuesFrom(obo:RO_0015015 obo:GO_0071753))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000819 obo:CL_0000785) +SubClassOf(obo:CL_0000819 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001014)) +SubClassOf(obo:CL_0000819 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001289)) +SubClassOf(obo:CL_0000819 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001879)) +SubClassOf(obo:CL_0000819 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045087)) +SubClassOf(obo:CL_0000819 ObjectSomeValuesFrom(obo:RO_0015015 obo:GO_0071753)) # Class: obo:CL_0000820 (B-1a B cell) @@ -12307,6 +13558,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000820 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000820 "B-1a B cell") EquivalentClasses(obo:CL_0000820 ObjectIntersectionOf(obo:CL_0000819 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001839))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000820 obo:CL_0000819) +SubClassOf(obo:CL_0000820 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001839)) # Class: obo:CL_0000821 (B-1b B cell) @@ -12323,6 +13575,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000821 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000821 "B-1b B cell") EquivalentClasses(obo:CL_0000821 ObjectIntersectionOf(obo:CL_0000819 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001839))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000821 obo:CL_0000819) +SubClassOf(obo:CL_0000821 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001839)) # Class: obo:CL_0000822 (B-2 B cell) @@ -12341,16 +13594,21 @@ AnnotationAssertion(rdfs:comment obo:CL_0000822 "B-2 B cells are reportedly CD48 AnnotationAssertion(rdfs:label obo:CL_0000822 "B-2 B cell") EquivalentClasses(obo:CL_0000822 ObjectIntersectionOf(obo:CL_0000785 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001879) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001289))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000822 obo:CL_0000785) +SubClassOf(obo:CL_0000822 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001879)) +SubClassOf(obo:CL_0000822 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001289)) # Class: obo:CL_0000823 (immature natural killer cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "GO_REF:0000031") Annotation(oboInOwl:hasDbXref "ISBN:0781735149") Annotation(oboInOwl:hasDbXref "PMID:12457618") obo:IAO_0000115 obo:CL_0000823 "A natural killer cell that is developmentally immature and expresses natural killer cell receptors (NKR).") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000823 "ZFA:0009346") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000823 "immature NK cell") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:12457618") oboInOwl:hasRelatedSynonym obo:CL_0000823 "p-NK") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000823 cl:cellxgene_subset) AnnotationAssertion(rdfs:comment obo:CL_0000823 "In mouse the NKR are Ly49 molecules and in human these cells express KIR molecules.") AnnotationAssertion(rdfs:label obo:CL_0000823 "immature natural killer cell") EquivalentClasses(obo:CL_0000823 ObjectIntersectionOf(obo:CL_0000623 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001501))) +SubClassOf(obo:CL_0000823 obo:CL_0000623) +SubClassOf(obo:CL_0000823 obo:CL_0001082) SubClassOf(obo:CL_0000823 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000937)) DisjointClasses(obo:CL_0000823 obo:CL_0000824) DisjointClasses(obo:CL_0000823 obo:CL_0000937) @@ -12361,6 +13619,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl AnnotationAssertion(obo:RO_0002175 obo:CL_0000824 obo:NCBITaxon_9606) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:14685782") oboInOwl:hasBroadSynonym obo:CL_0000824 "LAK cell") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:14685782") oboInOwl:hasBroadSynonym obo:CL_0000824 "lymphokine activated killer cell") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000824 "ZFA:0009347") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000824 "mature NK cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000824 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000824 "mature natural killer cell") @@ -12370,6 +13629,7 @@ SubClassOf(obo:CL_0000824 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000823)) # Class: obo:CL_0000825 (pro-NK cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "GOC:pam") Annotation(oboInOwl:hasDbXref "GO_REF:0000031") Annotation(oboInOwl:hasDbXref "PMID:11532393") Annotation(oboInOwl:hasDbXref "PMID:12457618") Annotation(oboInOwl:hasDbXref "PMID:15032583") Annotation(oboInOwl:hasDbXref "PMID:15766674") obo:IAO_0000115 obo:CL_0000825 "A lymphoid progenitor cell that is committed to the natural killer cell lineage, expressing CD122 (IL-15) receptor, but lacking many of the phenotypic characteristics of later stages of natural killer cell development such as expression of NK activating and inhibitory molecules. In human this cell has the phenotype CD34-positive, CD45RA-positive, CD10-positive, CD117-negative, and CD161 negative.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000825 "ZFA:0009348") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:12457618") Annotation(oboInOwl:hasDbXref "PMID:15032583") Annotation(oboInOwl:hasDbXref "PMID:15766674") oboInOwl:hasExactSynonym obo:CL_0000825 "NKP") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000825 "natural killer cell progenitor") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000825 "pro-natural killer cell") @@ -12379,6 +13639,12 @@ AnnotationAssertion(rdfs:comment obo:CL_0000825 "Most markers only described for AnnotationAssertion(rdfs:label obo:CL_0000825 "pro-NK cell") EquivalentClasses(obo:CL_0000825 ObjectIntersectionOf(obo:CL_0000838 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001874) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002065) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001015) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001381) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001898))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000825 obo:CL_0000838) +SubClassOf(obo:CL_0000825 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001874)) +SubClassOf(obo:CL_0000825 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002065)) +SubClassOf(obo:CL_0000825 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003)) +SubClassOf(obo:CL_0000825 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001015)) +SubClassOf(obo:CL_0000825 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001381)) +SubClassOf(obo:CL_0000825 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001898)) SubClassOf(obo:CL_0000825 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000051)) # Class: obo:CL_0000826 (pro-B cell) @@ -12387,6 +13653,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl AnnotationAssertion(obo:RO_0002175 obo:CL_0000826 obo:NCBITaxon_9606) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:17582343") oboInOwl:hasBroadSynonym obo:CL_0000826 "pre-pro B cell") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000826 "BTO:0003104") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000826 "ZFA:0009349") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000826 "pro-B lymphocyte") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000826 "pro-B-cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000826 "pro-B-lymphocyte") @@ -12401,11 +13668,15 @@ AnnotationAssertion(rdfs:comment obo:CL_0000826 "Human pro-B cells are reportedl AnnotationAssertion(rdfs:label obo:CL_0000826 "pro-B cell") EquivalentClasses(obo:CL_0000826 ObjectIntersectionOf(obo:CL_0000838 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001903) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000006611) ObjectSomeValuesFrom(obo:RO_0000056 obo:GO_0033152))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000826 obo:CL_0000838) +SubClassOf(obo:CL_0000826 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001903)) +SubClassOf(obo:CL_0000826 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000006611)) +SubClassOf(obo:CL_0000826 ObjectSomeValuesFrom(obo:RO_0000056 obo:GO_0033152)) SubClassOf(obo:CL_0000826 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000051)) # Class: obo:CL_0000827 (pro-T cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "ISBN:0781735149") obo:IAO_0000115 obo:CL_0000827 "A lymphoid progenitor cell of the T cell lineage, with some lineage specific marker expression, but not yet fully committed to the T cell lineage.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000827 "ZFA:0009350") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000827 "pro-T lymphocyte") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000827 "progenitor T cell") AnnotationAssertion(oboInOwl:hasNarrowSynonym obo:CL_0000827 "DN1 cell") @@ -12416,15 +13687,20 @@ AnnotationAssertion(rdfs:label obo:CL_0000827 "pro-T cell") EquivalentClasses(obo:CL_0000827 ObjectIntersectionOf(obo:CL_0000838 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030217))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000827 obo:CL_0000838) SubClassOf(obo:CL_0000827 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000051)) +SubClassOf(obo:CL_0000827 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030217)) # Class: obo:CL_0000828 (thromboblast) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:7758949") obo:IAO_0000115 obo:CL_0000828 "A progenitor cell of the thrombocyte, a nucleated blood cell involved in coagulation typically seen in birds and other non-mammalian vertebrates.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000828 "ZFA:0009351") AnnotationAssertion(rdfs:comment obo:CL_0000828 "Note that this is a non-mammalian cell type.") AnnotationAssertion(rdfs:label obo:CL_0000828 "thromboblast") EquivalentClasses(obo:CL_0000828 ObjectIntersectionOf(obo:CL_0000839 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001407) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002574))) +SubClassOf(obo:CL_0000828 obo:CL_0000226) +SubClassOf(obo:CL_0000828 obo:CL_0000763) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000828 obo:CL_0000839) SubClassOf(obo:CL_0000828 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000050)) +SubClassOf(obo:CL_0000828 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002574)) # Class: obo:CL_0000829 (basophilic myeloblast) @@ -12433,6 +13709,7 @@ AnnotationAssertion(rdfs:label obo:CL_0000829 "basophilic myeloblast") EquivalentClasses(obo:CL_0000829 ObjectIntersectionOf(obo:CL_0000835 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030221))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000829 obo:CL_0000835) SubClassOf(obo:CL_0000829 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000613)) +SubClassOf(obo:CL_0000829 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030221)) # Class: obo:CL_0000830 (basophilic promyelocyte) @@ -12442,6 +13719,7 @@ AnnotationAssertion(rdfs:label obo:CL_0000830 "basophilic promyelocyte") EquivalentClasses(obo:CL_0000830 ObjectIntersectionOf(obo:CL_0000836 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030221))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000830 obo:CL_0000836) SubClassOf(obo:CL_0000830 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000829)) +SubClassOf(obo:CL_0000830 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030221)) # Class: obo:CL_0000831 (mast cell progenitor) @@ -12453,8 +13731,33 @@ AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000831 "colony forming un AnnotationAssertion(rdfs:comment obo:CL_0000831 "MCP are CD16-positive, CD32-positive, CD34-positive, CD45-positive, integrin beta-7-positive, and lin-negative (CD2, CD3e, CD4, CD5, CD8a, CD14, CD19, CD20, CD27, integrin alpha-M, ly6c, ly6g, NCAM-1, and ter119). These cells also express the transcription factors GATA-1, GATA-2, and MITF, but not C/EBPa.") AnnotationAssertion(rdfs:label obo:CL_0000831 "mast cell progenitor") EquivalentClasses(obo:CL_0000831 ObjectIntersectionOf(obo:CL_0000839 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000007857) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000007858) ObjectSomeValuesFrom(obo:CL_4030045 obo:PR_000005307) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001024) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001083) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001839) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001889) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001963) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002978) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002979) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002980) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002981) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000005178) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000016401) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0060374) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000009143) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000002065) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000007431))) +SubClassOf(obo:CL_0000831 obo:CL_0000763) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000831 obo:CL_0000839) +SubClassOf(obo:CL_0000831 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000007857)) +SubClassOf(obo:CL_0000831 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000007858)) +SubClassOf(obo:CL_0000831 ObjectSomeValuesFrom(obo:CL_4030045 obo:PR_000005307)) +SubClassOf(obo:CL_0000831 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002)) +SubClassOf(obo:CL_0000831 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004)) +SubClassOf(obo:CL_0000831 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012)) +SubClassOf(obo:CL_0000831 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020)) +SubClassOf(obo:CL_0000831 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001024)) +SubClassOf(obo:CL_0000831 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001083)) +SubClassOf(obo:CL_0000831 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084)) +SubClassOf(obo:CL_0000831 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289)) +SubClassOf(obo:CL_0000831 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001839)) +SubClassOf(obo:CL_0000831 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001889)) +SubClassOf(obo:CL_0000831 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001963)) +SubClassOf(obo:CL_0000831 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002978)) +SubClassOf(obo:CL_0000831 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002979)) +SubClassOf(obo:CL_0000831 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002980)) +SubClassOf(obo:CL_0000831 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002981)) +SubClassOf(obo:CL_0000831 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000005178)) +SubClassOf(obo:CL_0000831 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000016401)) SubClassOf(obo:CL_0000831 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002028)) +SubClassOf(obo:CL_0000831 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0060374)) +SubClassOf(obo:CL_0000831 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000009143)) +SubClassOf(obo:CL_0000831 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000002065)) +SubClassOf(obo:CL_0000831 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000007431)) # Class: obo:CL_0000832 (eosinophilic myeloblast) @@ -12463,6 +13766,7 @@ AnnotationAssertion(rdfs:label obo:CL_0000832 "eosinophilic myeloblast") EquivalentClasses(obo:CL_0000832 ObjectIntersectionOf(obo:CL_0000835 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030222))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000832 obo:CL_0000835) SubClassOf(obo:CL_0000832 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000611)) +SubClassOf(obo:CL_0000832 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030222)) # Class: obo:CL_0000833 (eosinophilic promyelocyte) @@ -12472,25 +13776,35 @@ AnnotationAssertion(rdfs:label obo:CL_0000833 "eosinophilic promyelocyte") EquivalentClasses(obo:CL_0000833 ObjectIntersectionOf(obo:CL_0000836 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030222))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000833 obo:CL_0000836) SubClassOf(obo:CL_0000833 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000832)) +SubClassOf(obo:CL_0000833 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030222)) # Class: obo:CL_0000834 (neutrophil progenitor cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0721601464") obo:IAO_0000115 obo:CL_0000834 "A progenitor cell of the neutrophil lineage.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000834 "ZFA:0009352") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000834 "neutrophil stem cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000834 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000834 "neutrophil progenitor cell") EquivalentClasses(obo:CL_0000834 ObjectIntersectionOf(obo:CL_0002191 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030223))) +SubClassOf(obo:CL_0000834 obo:CL_0000763) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000834 obo:CL_0002191) SubClassOf(obo:CL_0000834 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000557)) +SubClassOf(obo:CL_0000834 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030223)) # Class: obo:CL_0000835 (myeloblast) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "ISBN:0721601464") Annotation(oboInOwl:hasDbXref "http://en.wikipedia.org/wiki/Myeloblast") Annotation(oboInOwl:hasDbXref "http://www.cap.org") obo:IAO_0000115 obo:CL_0000835 "The most primitive precursor in the granulocytic series, having fine, evenly distributed chromatin, several nucleoli, a high nuclear-to-cytoplasmic ration (5:1-7:1), and a nongranular basophilic cytoplasm. They reside in the bone marrow.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000835 "BTO:0000187") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000835 "FMA:83524") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000835 "ZFA:0009353") AnnotationAssertion(rdfs:label obo:CL_0000835 "myeloblast") EquivalentClasses(obo:CL_0000835 ObjectIntersectionOf(obo:CL_0002191 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017503) ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0000791) ObjectSomeValuesFrom(obo:CL_4030045 obo:GO_0042582) ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0040072))) +SubClassOf(obo:CL_0000835 obo:CL_0000763) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000835 obo:CL_0002191) +SubClassOf(obo:CL_0000835 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017503)) +SubClassOf(obo:CL_0000835 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0000791)) +SubClassOf(obo:CL_0000835 ObjectSomeValuesFrom(obo:CL_4030045 obo:GO_0042582)) +SubClassOf(obo:CL_0000835 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0040072)) SubClassOf(obo:CL_0000835 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000557)) # Class: obo:CL_0000836 (promyelocyte) @@ -12503,7 +13817,17 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000836 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000836 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000836 "promyelocyte") EquivalentClasses(obo:CL_0000836 ObjectIntersectionOf(obo:CL_0000839 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017503) ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0005730) ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0042582) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001483) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001932) ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0040072) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001456) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001892))) +SubClassOf(obo:CL_0000836 obo:CL_0000763) SubClassOf(obo:CL_0000836 obo:CL_0002191) +SubClassOf(obo:CL_0000836 ObjectSomeValuesFrom(obo:BFO_0000051 obo:CL_0017503)) +SubClassOf(obo:CL_0000836 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0005730)) +SubClassOf(obo:CL_0000836 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0042582)) +SubClassOf(obo:CL_0000836 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012)) +SubClassOf(obo:CL_0000836 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001483)) +SubClassOf(obo:CL_0000836 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001932)) +SubClassOf(obo:CL_0000836 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0040072)) +SubClassOf(obo:CL_0000836 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001456)) +SubClassOf(obo:CL_0000836 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001892)) SubClassOf(obo:CL_0000836 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000835)) # Class: obo:CL_0000837 (hematopoietic multipotent progenitor cell) @@ -12512,6 +13836,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl AnnotationAssertion(obo:RO_0002175 obo:CL_0000837 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000837 "BTO:0000725") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000837 "CALOHA:TS-0448") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000837 "ZFA:0009354") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000837 "MPP") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000837 "hemopoietic progenitor cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000837 cl:blood_and_immune_upper_slim) @@ -12520,8 +13845,23 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000837 core:human_reference_atlas) AnnotationAssertion(rdfs:comment obo:CL_0000837 "Markers differ between mouse and human.") AnnotationAssertion(rdfs:label obo:CL_0000837 "hematopoietic multipotent progenitor cell") EquivalentClasses(obo:CL_0000837 ObjectIntersectionOf(obo:CL_0000988 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001024) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001083) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001839) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001869) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001889) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002978) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002981) ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001402) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000837 obo:CL_0000988) +SubClassOf(obo:CL_0000837 obo:BFO_0000002) SubClassOf(obo:CL_0000837 obo:CL_0008001) +SubClassOf(obo:CL_0000837 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002)) +SubClassOf(obo:CL_0000837 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004)) +SubClassOf(obo:CL_0000837 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012)) +SubClassOf(obo:CL_0000837 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020)) +SubClassOf(obo:CL_0000837 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001024)) +SubClassOf(obo:CL_0000837 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001083)) +SubClassOf(obo:CL_0000837 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084)) +SubClassOf(obo:CL_0000837 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289)) +SubClassOf(obo:CL_0000837 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001839)) +SubClassOf(obo:CL_0000837 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001869)) +SubClassOf(obo:CL_0000837 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001889)) +SubClassOf(obo:CL_0000837 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002978)) +SubClassOf(obo:CL_0000837 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002981)) +SubClassOf(obo:CL_0000837 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001402)) +SubClassOf(obo:CL_0000837 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003)) SubClassOf(obo:CL_0000837 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000037)) DisjointClasses(obo:CL_0000837 obo:CL_0002032) @@ -12532,11 +13872,14 @@ AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000838 "lymphoid progenitor AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000838 "BTO:0004731") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000838 "CALOHA:TS-2025") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000838 "FMA:70338") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000838 "ZFA:0009355") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000838 cl:cellxgene_subset) AnnotationAssertion(rdfs:comment obo:CL_0000838 "Note that this is a class of cell types, not an identified single cell type.") AnnotationAssertion(rdfs:label obo:CL_0000838 "lymphoid lineage restricted progenitor cell") EquivalentClasses(obo:CL_0000838 ObjectIntersectionOf(obo:CL_0002031 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030098))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000838 obo:CL_0002031) +SubClassOf(obo:CL_0000838 obo:CL_0011026) +SubClassOf(obo:CL_0000838 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030098)) DisjointClasses(obo:CL_0000838 obo:CL_0000839) # Class: obo:CL_0000839 (myeloid lineage restricted progenitor cell) @@ -12547,12 +13890,15 @@ AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000839 "myeloid progenitor AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000839 "BTO:0004730") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000839 "CALOHA:TS-2099") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000839 "FMA:70339") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000839 "ZFA:0009356") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000839 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000839 core:human_reference_atlas) AnnotationAssertion(rdfs:comment obo:CL_0000839 "Note that this is a class of cell types, not an identified single cell type.") AnnotationAssertion(rdfs:label obo:CL_0000839 "myeloid lineage restricted progenitor cell") EquivalentClasses(obo:CL_0000839 ObjectIntersectionOf(obo:CL_0002031 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030099))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000839 obo:CL_0002031) +SubClassOf(obo:CL_0000839 obo:CL_0011026) +SubClassOf(obo:CL_0000839 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030099)) # Class: obo:CL_0000840 (immature conventional dendritic cell) @@ -12562,8 +13908,12 @@ AnnotationAssertion(oboInOwl:hasNarrowSynonym obo:CL_0000840 "immature myeloid d AnnotationAssertion(oboInOwl:inSubset obo:CL_0000840 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000840 "immature conventional dendritic cell") EquivalentClasses(obo:CL_0000840 ObjectIntersectionOf(obo:CL_0000990 ObjectSomeValuesFrom(obo:RO_0015016 obo:GO_0042613) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001412) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001438))) +SubClassOf(obo:CL_0000840 obo:CL_0000766) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000840 obo:CL_0000990) SubClassOf(obo:CL_0000840 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0001029)) +SubClassOf(obo:CL_0000840 ObjectSomeValuesFrom(obo:RO_0015016 obo:GO_0042613)) +SubClassOf(obo:CL_0000840 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001412)) +SubClassOf(obo:CL_0000840 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001438)) # Class: obo:CL_0000841 (mature conventional dendritic cell) @@ -12574,8 +13924,13 @@ AnnotationAssertion(oboInOwl:hasNarrowSynonym obo:CL_0000841 "mature myeloid den AnnotationAssertion(oboInOwl:inSubset obo:CL_0000841 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000841 "mature conventional dendritic cell") EquivalentClasses(obo:CL_0000841 ObjectIntersectionOf(obo:CL_0000990 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001310) ObjectSomeValuesFrom(obo:RO_0015015 obo:GO_0042613) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001412) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001438))) +SubClassOf(obo:CL_0000841 obo:CL_0000766) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000841 obo:CL_0000990) +SubClassOf(obo:CL_0000841 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001310)) SubClassOf(obo:CL_0000841 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000840)) +SubClassOf(obo:CL_0000841 ObjectSomeValuesFrom(obo:RO_0015015 obo:GO_0042613)) +SubClassOf(obo:CL_0000841 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001412)) +SubClassOf(obo:CL_0000841 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001438)) # Class: obo:CL_0000842 (mononuclear cell) @@ -12583,12 +13938,14 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") obo:IAO_0000115 obo AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000842 "BTO:0000878") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000842 "CALOHA:TS-0768") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000842 "FMA:86713") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000842 "ZFA:0009357") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000842 "mononuclear leukocyte") AnnotationAssertion(oboInOwl:hasNarrowSynonym obo:CL_0000842 "peripheral blood mononuclear cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000842 cl:blood_and_immune_upper_slim) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000842 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000842 "mononuclear cell") EquivalentClasses(obo:CL_0000842 ObjectIntersectionOf(obo:CL_0000738 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001407))) +SubClassOf(obo:CL_0000842 obo:CL_0000226) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000842 obo:CL_0000738) # Class: obo:CL_0000843 (follicular B cell) @@ -12603,7 +13960,13 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000843 cl:cellxgene_subset) AnnotationAssertion(rdfs:comment obo:CL_0000843 "Follicular B cells are also reportedly CD48-positive, CD84-positive, CD229-positive, and CD352-positive.") AnnotationAssertion(rdfs:label obo:CL_0000843 "follicular B cell") EquivalentClasses(obo:CL_0000843 ObjectIntersectionOf(obo:CL_0000785 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001839) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001879) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002037) ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071738) ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071753) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001014) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001289) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001338))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000843 obo:CL_0000785) +SubClassOf(obo:CL_0000843 obo:CL_0000822) +SubClassOf(obo:CL_0000843 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001839)) +SubClassOf(obo:CL_0000843 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002037)) +SubClassOf(obo:CL_0000843 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071738)) +SubClassOf(obo:CL_0000843 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071753)) +SubClassOf(obo:CL_0000843 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001014)) +SubClassOf(obo:CL_0000843 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001338)) # Class: obo:CL_0000844 (germinal center B cell) @@ -12622,6 +13985,8 @@ AnnotationAssertion(rdfs:comment obo:CL_0000844 "Germinal center B cells are als AnnotationAssertion(rdfs:label obo:CL_0000844 "germinal center B cell") EquivalentClasses(obo:CL_0000844 ObjectIntersectionOf(obo:CL_0000785 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001745) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001289))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000844 obo:CL_0000785) +SubClassOf(obo:CL_0000844 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001745)) +SubClassOf(obo:CL_0000844 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001289)) SubClassOf(obo:CL_0000844 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000843)) # Class: obo:CL_0000845 (marginal zone B cell of spleen) @@ -12643,6 +14008,14 @@ AnnotationAssertion(rdfs:comment obo:CL_0000845 "MZ B cells are reportedly CD1-p AnnotationAssertion(rdfs:label obo:CL_0000845 "marginal zone B cell of spleen") EquivalentClasses(obo:CL_0000845 ObjectIntersectionOf(obo:CL_0000785 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001251) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001880) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002037) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001289) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001338) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0042742) ObjectSomeValuesFrom(obo:RO_0015015 obo:GO_0071753))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000845 obo:CL_0000785) +SubClassOf(obo:CL_0000845 obo:CL_2000074) +SubClassOf(obo:CL_0000845 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001251)) +SubClassOf(obo:CL_0000845 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001880)) +SubClassOf(obo:CL_0000845 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002037)) +SubClassOf(obo:CL_0000845 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001289)) +SubClassOf(obo:CL_0000845 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001338)) +SubClassOf(obo:CL_0000845 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0042742)) +SubClassOf(obo:CL_0000845 ObjectSomeValuesFrom(obo:RO_0015015 obo:GO_0071753)) # Class: obo:CL_0000846 (vestibular dark cell) @@ -12653,14 +14026,18 @@ SubClassOf(obo:CL_0000846 obo:CL_0000066) # Class: obo:CL_0000847 (ciliated olfactory receptor neuron) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:16841163") obo:IAO_0000115 obo:CL_0000847 "An olfactory receptor cell in which the apical ending of the dendrite is a pronounced ciliated olfactory knob.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000847 "ZFA:0009358") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000847 "ciliated olfactory sensory neuron") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000847 "ciliated sensory neuron") AnnotationAssertion(rdfs:label obo:CL_0000847 "ciliated olfactory receptor neuron") EquivalentClasses(obo:CL_0000847 ObjectIntersectionOf(obo:CL_0000207 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0005929))) +SubClassOf(obo:CL_0000847 obo:CL_0000064) +SubClassOf(obo:CL_0000847 obo:CL_0000207) # Class: obo:CL_0000848 (microvillous olfactory receptor neuron) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:16841163") obo:IAO_0000115 obo:CL_0000848 "An olfactory receptor cell in which the apical ending of the dendrite is a knob that bears numerous microvilli.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000848 "ZFA:0009359") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000848 "microvillous olfactory sensory neuron") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000848 "microvillous sensory neuron") AnnotationAssertion(rdfs:label obo:CL_0000848 "microvillous olfactory receptor neuron") @@ -12669,6 +14046,7 @@ SubClassOf(obo:CL_0000848 obo:CL_0000207) # Class: obo:CL_0000849 (crypt olfactory receptor neuron) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:16841163") obo:IAO_0000115 obo:CL_0000849 "An olfactory receptor cell with short cilia growing in an invagination bordered by microvilli.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000849 "ZFA:0009360") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000849 "crypt cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000849 "crypt olfactory sensory neuron") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000849 "crypt sensory neuron") @@ -12678,19 +14056,23 @@ SubClassOf(obo:CL_0000849 obo:CL_0000207) # Class: obo:CL_0000850 (serotonergic neuron) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "SANBI:mhl") obo:IAO_0000115 obo:CL_0000850 "A neuron that releases serotonin as a neurotransmitter.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000850 "FBbt:00005133") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000850 "FBbt:00005133") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000850 "MESH:D059326") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000850 "WBbt:0006837") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000850 "ZFA:0009361") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000850 "5-HT neuron") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000850 "5-hydroxytryptamine neuron") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000850 "serotinergic neuron") AnnotationAssertion(rdfs:label obo:CL_0000850 "serotonergic neuron") EquivalentClasses(obo:CL_0000850 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0060096))) +SubClassOf(obo:CL_0000850 obo:CL_0000458) SubClassOf(obo:CL_0000850 obo:CL_0000540) +SubClassOf(obo:CL_0000850 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0060096)) # Class: obo:CL_0000851 (neuromast mantle cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ISBN:0125296509") obo:IAO_0000115 obo:CL_0000851 "Neuromast mantle cell is a non-sensory cell. Neuromast mantle cells surround the neuromast support cells and neuromast hair cells, separating the neuromast from the epidermis, and secrete cupula in which the ciliary bundles of all the hair cells are embedded.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000851 "ZFA:0009362") AnnotationAssertion(rdfs:label obo:CL_0000851 "neuromast mantle cell") SubClassOf(obo:CL_0000851 obo:CL_0000151) SubClassOf(obo:CL_0000851 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0008904)) @@ -12699,6 +14081,7 @@ DisjointClasses(obo:CL_0000851 obo:CL_0000855) # Class: obo:CL_0000852 (neuromast supporting cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ISBN:0125296509") obo:IAO_0000115 obo:CL_0000852 "Neuromast support cell is a non-sensory cell of the neuromast that extend between the sensory hair cells from the basement membrane to the apical surface; neuromast support cells are surrounded by neuromast mantle cells.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000852 "ZFA:0009363") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000852 "neuromast support cell") AnnotationAssertion(rdfs:label obo:CL_0000852 "neuromast supporting cell") SubClassOf(obo:CL_0000852 obo:CL_0000630) @@ -12709,6 +14092,7 @@ DisjointClasses(obo:CL_0000852 obo:CL_0000855) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0517223651") Annotation(oboInOwl:hasDbXref "SANBI:mhl") obo:IAO_0000115 obo:CL_0000853 "Olfactory epithelial support cell is a columnar cell that extends from the epithelial free margin to the basement membrane of the olfactory epithelium. This cell type has a large, vertically, elongate, euchromatic nucleus, along with other nuclei, forms a layer superficial to the cell body of the receptor cell; sends long somewhat irregular microvilli into the mucus layer; at the base, with expanded end-feet containing numerous lamellated dense bodies resembling lipofuscin of neurons.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000853 "FMA:62302") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000853 "ZFA:0009364") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000853 "olfactory epithelial support cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000853 "olfactory sustentacular cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000853 "supporting cell of olfactory epithelium") @@ -12716,12 +14100,14 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000853 "sustentaculocyte of AnnotationAssertion(rdfs:label obo:CL_0000853 "olfactory epithelial supporting cell") EquivalentClasses(obo:CL_0000853 ObjectIntersectionOf(obo:CL_0000630 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001997))) SubClassOf(obo:CL_0000853 obo:CL_0000630) -SubClassOf(obo:CL_0000853 obo:CL_0002167) +SubClassOf(obo:CL_0000853 obo:CL_0002169) # Class: obo:CL_0000854 (interneuromast cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "SANBI:mhl") obo:IAO_0000115 obo:CL_0000854 "Interneuromast cell is a neuroectodermal cell deposited by the migrating lateral line primordium between the neuromasts. Interneuromast cells proliferate and migrate to form additional neuromasts.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000854 "ZFA:0009365") AnnotationAssertion(rdfs:label obo:CL_0000854 "interneuromast cell") +SubClassOf(obo:CL_0000854 obo:BFO_0000002) SubClassOf(obo:CL_0000854 obo:CL_0000133) SubClassOf(obo:CL_0000854 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000032)) @@ -12730,27 +14116,38 @@ SubClassOf(obo:CL_0000854 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000032)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "SANBI:mhl") obo:IAO_0000115 obo:CL_0000855 "Hair cell is a mechanoreceptor cell that is sensitive to movement of the hair-like projections (stereocilia and kinocilia) which relay the information centrally in the nervous system.") AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000855 "hair cell") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000855 "BTO:0004744") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000855 "ZFA:0009366") AnnotationAssertion(rdfs:label obo:CL_0000855 "sensory hair cell") SubClassOf(obo:CL_0000855 obo:CL_0000199) # Class: obo:CL_0000856 (neuromast hair cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "SANBI:mhl") obo:IAO_0000115 obo:CL_0000856 "Neuromast hair cell is a hair cell that acts as a sensory receptor of the neuromast; it is morphologically polarized as a result of the relative position of the single kinocilium and the clusters of stereocilia on its apical surface.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000856 "ZFA:0009367") AnnotationAssertion(rdfs:label obo:CL_0000856 "neuromast hair cell") EquivalentClasses(obo:CL_0000856 ObjectIntersectionOf(obo:CL_0000855 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0008904))) +SubClassOf(obo:CL_0000856 obo:BFO_0000002) +SubClassOf(obo:CL_0000856 obo:CL_0000006) SubClassOf(obo:CL_0000856 obo:CL_0000855) +SubClassOf(obo:CL_0000856 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0008904)) # Class: obo:CL_0000857 (slow muscle myoblast) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "SANBI:mhl") obo:IAO_0000115 obo:CL_0000857 "A skeletal muscle myoblast that differentiates into slow muscle fibers.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000857 "ZFA:0009368") AnnotationAssertion(rdfs:label obo:CL_0000857 "slow muscle myoblast") EquivalentClasses(obo:CL_0000857 ObjectIntersectionOf(obo:CL_0000056 ObjectSomeValuesFrom(obo:RO_0002203 obo:CL_0000189))) +SubClassOf(obo:CL_0000857 obo:CL_0000515) +SubClassOf(obo:CL_0000857 ObjectSomeValuesFrom(obo:RO_0002203 obo:CL_0000189)) # Class: obo:CL_0000858 (fast muscle myoblast) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "SANBI:mhl") obo:IAO_0000115 obo:CL_0000858 "A skeletal muscle myoblast that differentiates into fast muscle fibers.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000858 "ZFA:0009369") AnnotationAssertion(rdfs:label obo:CL_0000858 "fast muscle myoblast") EquivalentClasses(obo:CL_0000858 ObjectIntersectionOf(obo:CL_0000056 ObjectSomeValuesFrom(obo:RO_0002203 obo:CL_0000190))) +SubClassOf(obo:CL_0000858 obo:CL_0000515) +SubClassOf(obo:CL_0000858 ObjectSomeValuesFrom(obo:RO_0002203 obo:CL_0000190)) # Class: obo:CL_0000859 (obo:CL_0000859) @@ -12769,6 +14166,12 @@ AnnotationAssertion(rdfs:comment obo:CL_0000860 "Markers: CCR2+CXCCR1 (huma AnnotationAssertion(rdfs:label obo:CL_0000860 "classical monocyte") EquivalentClasses(obo:CL_0000860 ObjectIntersectionOf(obo:CL_0000576 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002548) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0006909) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0006954) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001199))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000860 obo:CL_0000576) +SubClassOf(obo:CL_0000860 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002)) +SubClassOf(obo:CL_0000860 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020)) +SubClassOf(obo:CL_0000860 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289)) +SubClassOf(obo:CL_0000860 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002548)) +SubClassOf(obo:CL_0000860 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0006954)) +SubClassOf(obo:CL_0000860 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001199)) # Class: obo:CL_0000861 (elicited macrophage) @@ -12782,6 +14185,10 @@ AnnotationAssertion(rdfs:comment obo:CL_0000861 "Markers: CD11b+, CD68+; Mouse: AnnotationAssertion(rdfs:label obo:CL_0000861 "elicited macrophage") EquivalentClasses(obo:CL_0000861 ObjectIntersectionOf(obo:CL_0000235 ObjectSomeValuesFrom(obo:RO_0000056 obo:GO_0006954) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001012) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001813) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002064))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000861 obo:CL_0000235) +SubClassOf(obo:CL_0000861 ObjectSomeValuesFrom(obo:RO_0000056 obo:GO_0006954)) +SubClassOf(obo:CL_0000861 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001012)) +SubClassOf(obo:CL_0000861 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001813)) +SubClassOf(obo:CL_0000861 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002064)) SubClassOf(obo:CL_0000861 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000860)) # Class: obo:CL_0000862 (suppressor macrophage) @@ -12791,6 +14198,7 @@ AnnotationAssertion(rdfs:comment obo:CL_0000862 "Markers: May express: IL10, TGF AnnotationAssertion(rdfs:label obo:CL_0000862 "suppressor macrophage") EquivalentClasses(obo:CL_0000862 ObjectIntersectionOf(obo:CL_0000861 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050777))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000862 obo:CL_0000861) +SubClassOf(obo:CL_0000862 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050777)) # Class: obo:CL_0000863 (inflammatory macrophage) @@ -12802,20 +14210,25 @@ AnnotationAssertion(rdfs:comment obo:CL_0000863 "Markers: Express: TNFa, IL1b, I AnnotationAssertion(rdfs:label obo:CL_0000863 "inflammatory macrophage") EquivalentClasses(obo:CL_0000863 ObjectIntersectionOf(obo:CL_0000861 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032611) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032635) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032640) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0042554) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0042742) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0051767))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000863 obo:CL_0000861) +SubClassOf(obo:CL_0000863 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032611)) +SubClassOf(obo:CL_0000863 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032635)) +SubClassOf(obo:CL_0000863 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032640)) +SubClassOf(obo:CL_0000863 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0042554)) +SubClassOf(obo:CL_0000863 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0042742)) +SubClassOf(obo:CL_0000863 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0051767)) # Class: obo:CL_0000864 (tissue-resident macrophage) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:ana") Annotation(oboInOwl:hasDbXref "GO_REF:0000031") Annotation(oboInOwl:hasDbXref "PMID:19770654") obo:IAO_0000115 obo:CL_0000864 "A macrophage constitutively resident in a particular tissue under non-inflammatory conditions, and capable of phagocytosing a variety of extracellular particulate material, including immune complexes, microorganisms, and dead cells.") -AnnotationAssertion(obo:RO_0002175 obo:CL_0000864 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000864 "FMA:84642") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000864 "FMA:84644") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000864 "fixed macrophage") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000864 "resting histiocyte") AnnotationAssertion(oboInOwl:inSubset obo:CL_0000864 cl:cellxgene_subset) -AnnotationAssertion(oboInOwl:inSubset obo:CL_0000864 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000864 "tissue-resident macrophage") EquivalentClasses(obo:CL_0000864 ObjectIntersectionOf(obo:CL_0000235 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000479))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000864 obo:CL_0000235) +SubClassOf(obo:CL_0000864 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000479)) # Class: obo:CL_0000865 (gastrointestinal tract (lamina propria) macrophage) @@ -12825,6 +14238,8 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000865 "macrophage of gastr AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000865 "macrophage of gastrointestinal tract (lamina propria)") AnnotationAssertion(rdfs:label obo:CL_0000865 "gastrointestinal tract (lamina propria) macrophage") EquivalentClasses(obo:CL_0000865 ObjectIntersectionOf(obo:CL_0000885 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004780))) +SubClassOf(obo:CL_0000865 obo:CL_0000885) +SubClassOf(obo:CL_0000865 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004780)) # Class: obo:CL_0000866 (thymic macrophage) @@ -12835,6 +14250,8 @@ AnnotationAssertion(rdfs:comment obo:CL_0000866 "Role or process: immune, cleara AnnotationAssertion(rdfs:label obo:CL_0000866 "thymic macrophage") EquivalentClasses(obo:CL_0000866 ObjectIntersectionOf(obo:CL_0000864 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002370) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0043277))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000866 obo:CL_0000864) +SubClassOf(obo:CL_0000866 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002370)) +SubClassOf(obo:CL_0000866 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0043277)) # Class: obo:CL_0000867 (secondary lymphoid organ macrophage) @@ -12850,13 +14267,19 @@ AnnotationAssertion(rdfs:comment obo:CL_0000868 "Marker was observed on rat cell AnnotationAssertion(rdfs:label obo:CL_0000868 "lymph node macrophage") EquivalentClasses(obo:CL_0000868 ObjectIntersectionOf(obo:CL_0000867 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000029) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001931) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001012) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001813))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000868 obo:CL_0000867) +SubClassOf(obo:CL_0000868 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000029)) +SubClassOf(obo:CL_0000868 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001931)) +SubClassOf(obo:CL_0000868 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001012)) +SubClassOf(obo:CL_0000868 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001813)) # Class: obo:CL_0000869 (tonsillar macrophage) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:ana") Annotation(oboInOwl:hasDbXref "GO_REF:0000031") Annotation(oboInOwl:hasDbXref "PMID:16048540") obo:IAO_0000115 obo:CL_0000869 "A gut-associated lymphoid tissue macrophage found in tonsils.") AnnotationAssertion(rdfs:label obo:CL_0000869 "tonsillar macrophage") EquivalentClasses(obo:CL_0000869 ObjectIntersectionOf(obo:CL_0000884 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002372) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002395))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000869 obo:CL_0000884) +SubClassOf(obo:CL_0000869 obo:CL_0000885) +SubClassOf(obo:CL_0000869 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002372)) +SubClassOf(obo:CL_0000869 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002395)) # Class: obo:CL_0000870 (Peyer's patch macrophage) @@ -12864,6 +14287,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:ana") Annotation(oboInOwl AnnotationAssertion(rdfs:label obo:CL_0000870 "Peyer's patch macrophage") EquivalentClasses(obo:CL_0000870 ObjectIntersectionOf(obo:CL_0000885 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001211))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000870 obo:CL_0000885) +SubClassOf(obo:CL_0000870 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001211)) # Class: obo:CL_0000871 (splenic macrophage) @@ -12873,6 +14297,8 @@ AnnotationAssertion(rdfs:comment obo:CL_0000871 "Role or process: immune, cleara AnnotationAssertion(rdfs:label obo:CL_0000871 "splenic macrophage") EquivalentClasses(obo:CL_0000871 ObjectIntersectionOf(obo:CL_0000867 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002106) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0034102))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000871 obo:CL_0000867) +SubClassOf(obo:CL_0000871 obo:CL_2000074) +SubClassOf(obo:CL_0000871 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0034102)) # Class: obo:CL_0000872 (splenic marginal zone macrophage) @@ -12883,6 +14309,12 @@ AnnotationAssertion(rdfs:comment obo:CL_0000872 "Markers: Mouse: F4/80-, MARCO+, AnnotationAssertion(rdfs:label obo:CL_0000872 "splenic marginal zone macrophage") EquivalentClasses(obo:CL_0000872 ObjectIntersectionOf(obo:CL_0000871 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001251) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001806) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001884) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001885) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000006172))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000872 obo:CL_0000871) +SubClassOf(obo:CL_0000872 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001251)) +SubClassOf(obo:CL_0000872 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012)) +SubClassOf(obo:CL_0000872 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001806)) +SubClassOf(obo:CL_0000872 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001884)) +SubClassOf(obo:CL_0000872 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001885)) +SubClassOf(obo:CL_0000872 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000006172)) # Class: obo:CL_0000873 (splenic metallophillic macrophage) @@ -12891,6 +14323,11 @@ AnnotationAssertion(rdfs:comment obo:CL_0000873 "Markers: Mouse: F4/80-, Dectin2 AnnotationAssertion(rdfs:label obo:CL_0000873 "splenic metallophillic macrophage") EquivalentClasses(obo:CL_0000873 ObjectIntersectionOf(obo:CL_0000871 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001251) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001813) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001931) ObjectSomeValuesFrom(obo:RO_0002220 obo:UBERON_0001959) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001806))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000873 obo:CL_0000871) +SubClassOf(obo:CL_0000873 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001251)) +SubClassOf(obo:CL_0000873 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001813)) +SubClassOf(obo:CL_0000873 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001931)) +SubClassOf(obo:CL_0000873 ObjectSomeValuesFrom(obo:RO_0002220 obo:UBERON_0001959)) +SubClassOf(obo:CL_0000873 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001806)) # Class: obo:CL_0000874 (splenic red pulp macrophage) @@ -12901,6 +14338,15 @@ AnnotationAssertion(rdfs:comment obo:CL_0000874 "Markers: Mouse: F4/80+, CD68+, AnnotationAssertion(rdfs:label obo:CL_0000874 "splenic red pulp macrophage") EquivalentClasses(obo:CL_0000874 ObjectIntersectionOf(obo:CL_0000871 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001250) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001013) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001806) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001813) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002064) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002972) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0006955) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0034102) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001012) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001931))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000874 obo:CL_0000871) +SubClassOf(obo:CL_0000874 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001250)) +SubClassOf(obo:CL_0000874 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001013)) +SubClassOf(obo:CL_0000874 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001806)) +SubClassOf(obo:CL_0000874 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001813)) +SubClassOf(obo:CL_0000874 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002064)) +SubClassOf(obo:CL_0000874 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002972)) +SubClassOf(obo:CL_0000874 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0006955)) +SubClassOf(obo:CL_0000874 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001012)) +SubClassOf(obo:CL_0000874 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001931)) # Class: obo:CL_0000875 (non-classical monocyte) @@ -12914,7 +14360,14 @@ AnnotationAssertion(rdfs:comment obo:CL_0000875 "Markers: CCR2-CX3CCR1+ (human, AnnotationAssertion(rdfs:label obo:CL_0000875 "non-classical monocyte") EquivalentClasses(obo:CL_0000875 ObjectIntersectionOf(obo:CL_0000576 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289) ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0000587) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0031294) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0030224) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001206))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000875 obo:CL_0000576) +SubClassOf(obo:CL_0000875 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002)) +SubClassOf(obo:CL_0000875 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020)) +SubClassOf(obo:CL_0000875 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289)) +SubClassOf(obo:CL_0000875 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0000587)) SubClassOf(obo:CL_0000875 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002393)) +SubClassOf(obo:CL_0000875 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0031294)) +SubClassOf(obo:CL_0000875 ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0030224)) +SubClassOf(obo:CL_0000875 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001206)) # Class: obo:CL_0000876 (splenic white pulp macrophage) @@ -12925,6 +14378,9 @@ AnnotationAssertion(rdfs:comment obo:CL_0000876 "Markers: Mouse: F4/80-, CD68+, AnnotationAssertion(rdfs:label obo:CL_0000876 "splenic white pulp macrophage") EquivalentClasses(obo:CL_0000876 ObjectIntersectionOf(obo:CL_0000871 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001959) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001813) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002064))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000876 obo:CL_0000871) +SubClassOf(obo:CL_0000876 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001959)) +SubClassOf(obo:CL_0000876 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001813)) +SubClassOf(obo:CL_0000876 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002064)) # Class: obo:CL_0000877 (splenic tingible body macrophage) @@ -12934,6 +14390,9 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000877 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000877 "splenic tingible body macrophage") EquivalentClasses(obo:CL_0000877 ObjectIntersectionOf(obo:CL_0000876 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001249) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000010329) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0043277))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000877 obo:CL_0000876) +SubClassOf(obo:CL_0000877 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001249)) +SubClassOf(obo:CL_0000877 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000010329)) +SubClassOf(obo:CL_0000877 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0043277)) # Class: obo:CL_0000878 (central nervous system macrophage) @@ -12943,29 +14402,45 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000878 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000878 "central nervous system macrophage") EquivalentClasses(obo:CL_0000878 ObjectIntersectionOf(obo:CL_0000864 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001017))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000878 obo:CL_0000864) +SubClassOf(obo:CL_0000878 obo:CL_0002319) +SubClassOf(obo:CL_0000878 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001017)) # Class: obo:CL_0000879 (meningeal macrophage) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:ana") Annotation(oboInOwl:hasDbXref "GO_REF:0000031") Annotation(oboInOwl:hasDbXref "PMID:11591794") obo:IAO_0000115 obo:CL_0000879 "A central nervous system macrophage found in the meninges (the three membranes that surround the brain). This macrophage types is highly phagocytic and expresses scavenger receptors.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:ana") Annotation(oboInOwl:hasDbXref "GO_REF:0000031") Annotation(oboInOwl:hasDbXref "PMID:11591794") Annotation(oboInOwl:hasDbXref "PMID:24078900") Annotation(oboInOwl:hasDbXref "PMID:37232741") obo:IAO_0000115 obo:CL_0000879 "A border associated macrophage that is part of a meninx. This macrophage type is elongated and amoeboid spindle-shaped with limited mobility. This macrophage is highly phagocytic, expresses scavenger receptors, has dynamic protrusions and extends its processes during inflammation.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:33556248") oboInOwl:hasExactSynonym obo:CL_0000879 "subdural leptomeningeal macrophage") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:28323268") oboInOwl:hasExactSynonym obo:CL_0000879 "subdural meningeal macrophage") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:33556248") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_0000879 "MM") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:38347231") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_0000879 "MnMΦ") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37232741") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_0000879 "sdΜΦ") AnnotationAssertion(rdfs:label obo:CL_0000879 "meningeal macrophage") -EquivalentClasses(obo:CL_0000879 ObjectIntersectionOf(obo:CL_0000878 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002360) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0005044))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000879 obo:CL_0000878) +EquivalentClasses(obo:CL_0000879 ObjectIntersectionOf(obo:CL_4042003 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002360) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0005044))) +SubClassOf(obo:CL_0000879 obo:CL_4042003) +SubClassOf(obo:CL_0000879 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002360)) +SubClassOf(obo:CL_0000879 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0005044)) -# Class: obo:CL_0000880 (choroid-plexus macrophage) +# Class: obo:CL_0000880 (choroid plexus macrophage) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:ana") Annotation(oboInOwl:hasDbXref "GO_REF:0000031") Annotation(oboInOwl:hasDbXref "PMID:9550136") obo:IAO_0000115 obo:CL_0000880 "A central nervous system macrophage found at the interface between the blood and the cerebrospinal fluid in the brain. This cell expresses scavenger receptors.") -AnnotationAssertion(rdfs:label obo:CL_0000880 "choroid-plexus macrophage") -EquivalentClasses(obo:CL_0000880 ObjectIntersectionOf(obo:CL_0000878 ObjectSomeValuesFrom(obo:RO_0001025 obo:UBERON_0001886) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0005044))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000880 obo:CL_0000878) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:ana") Annotation(oboInOwl:hasDbXref "GO_REF:0000031") Annotation(oboInOwl:hasDbXref "PMID:37232741") Annotation(oboInOwl:hasDbXref "PMID:9550136") obo:IAO_0000115 obo:CL_0000880 "A border associated macrophage found at the interface between the blood and the cerebrospinal fluid in the brain. This central nervous system macrophage has a star-like shaped body and expresses scavenger receptors.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37232741") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_0000880 "cpMΦ") +AnnotationAssertion(rdfs:label obo:CL_0000880 "choroid plexus macrophage") +EquivalentClasses(obo:CL_0000880 ObjectIntersectionOf(obo:CL_4042003 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001886) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0005044))) +SubClassOf(obo:CL_0000880 obo:CL_4042003) +SubClassOf(obo:CL_0000880 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001886)) +SubClassOf(obo:CL_0000880 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0005044)) # Class: obo:CL_0000881 (perivascular macrophage) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "GO_REF:0000031") Annotation(oboInOwl:hasDbXref "PMID:16507898") obo:IAO_0000115 obo:CL_0000881 "A central nervous system macrophage found in small blood vessels in the brain. Markers include CD14+CD16+CD163+.") -AnnotationAssertion(rdfs:comment obo:CL_0000881 "Markers: Human/monkey, mice: CD163. Human: CD14+CD16+CD163+.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "GO_REF:0000031") Annotation(oboInOwl:hasDbXref "PMID:16507898") Annotation(oboInOwl:hasDbXref "PMID:37232741") obo:IAO_0000115 obo:CL_0000881 "A border associated macrophage that is adjacent to a small blood vessel of a brain. A perivascular macrophage expresses the markers CD14, CD16 and CD163. In homeostatic conditions, this central nervous system macrophage has a non-motile cell body with extending and retracting projections through the blood vessel wall.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37232741") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_0000881 "pvMΦ") AnnotationAssertion(rdfs:label obo:CL_0000881 "perivascular macrophage") -EquivalentClasses(obo:CL_0000881 ObjectIntersectionOf(obo:CL_0000878 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001981) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001483) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001889) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001925))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000881 obo:CL_0000878) +EquivalentClasses(obo:CL_0000881 ObjectIntersectionOf(obo:CL_4042003 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001981) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001483) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001889) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001925))) SubClassOf(obo:CL_0000881 obo:CL_4033054) +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000881 obo:CL_4042003) +SubClassOf(obo:CL_0000881 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001981)) +SubClassOf(obo:CL_0000881 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001483)) +SubClassOf(obo:CL_0000881 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001889)) +SubClassOf(obo:CL_0000881 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001925)) # Class: obo:CL_0000882 (thymic medullary macrophage) @@ -12975,6 +14450,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000882 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000882 "thymic medullary macrophage") EquivalentClasses(obo:CL_0000882 ObjectIntersectionOf(obo:CL_0000866 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002124))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000882 obo:CL_0000866) +SubClassOf(obo:CL_0000882 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002124)) # Class: obo:CL_0000883 (thymic cortical macrophage) @@ -12984,6 +14460,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000883 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000883 "thymic cortical macrophage") EquivalentClasses(obo:CL_0000883 ObjectIntersectionOf(obo:CL_0000866 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002123))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000883 obo:CL_0000866) +SubClassOf(obo:CL_0000883 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002123)) # Class: obo:CL_0000884 (mucosa-associated lymphoid tissue macrophage) @@ -12991,6 +14468,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:ana") Annotation(oboInOwl AnnotationAssertion(rdfs:label obo:CL_0000884 "mucosa-associated lymphoid tissue macrophage") EquivalentClasses(obo:CL_0000884 ObjectIntersectionOf(obo:CL_0000867 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001961))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000884 obo:CL_0000867) +SubClassOf(obo:CL_0000884 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001961)) # Class: obo:CL_0000885 (gut-associated lymphoid tissue macrophage) @@ -12998,6 +14476,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:ana") Annotation(oboInOwl AnnotationAssertion(rdfs:label obo:CL_0000885 "gut-associated lymphoid tissue macrophage") EquivalentClasses(obo:CL_0000885 ObjectIntersectionOf(obo:CL_0000884 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001962) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002387))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000885 obo:CL_0000884) +SubClassOf(obo:CL_0000885 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001962)) +SubClassOf(obo:CL_0000885 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002387)) # Class: obo:CL_0000886 (nasal and broncial associated lymphoid tissue macrophage) @@ -13005,6 +14485,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:ana") Annotation(oboInOwl AnnotationAssertion(rdfs:label obo:CL_0000886 "nasal and broncial associated lymphoid tissue macrophage") EquivalentClasses(obo:CL_0000886 ObjectIntersectionOf(obo:CL_0000884 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001963) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002395))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000886 obo:CL_0000884) +SubClassOf(obo:CL_0000886 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001963)) +SubClassOf(obo:CL_0000886 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002395)) # Class: obo:CL_0000887 (lymph node subcapsular sinus macrophage) @@ -13014,6 +14496,9 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000887 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000887 "lymph node subcapsular sinus macrophage") EquivalentClasses(obo:CL_0000887 ObjectIntersectionOf(obo:CL_0000868 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001931) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032816) ObjectSomeValuesFrom(obo:RO_0002220 obo:UBERON_0002194))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000887 obo:CL_0000868) +SubClassOf(obo:CL_0000887 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001931)) +SubClassOf(obo:CL_0000887 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032816)) +SubClassOf(obo:CL_0000887 ObjectSomeValuesFrom(obo:RO_0002220 obo:UBERON_0002194)) # Class: obo:CL_0000888 (lymph node tingible body macrophage) @@ -13023,6 +14508,9 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000888 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000888 "lymph node tingible body macrophage") EquivalentClasses(obo:CL_0000888 ObjectIntersectionOf(obo:CL_0000868 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002006) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002905) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0043277))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000888 obo:CL_0000868) +SubClassOf(obo:CL_0000888 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002006)) +SubClassOf(obo:CL_0000888 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002905)) +SubClassOf(obo:CL_0000888 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0043277)) # Class: obo:CL_0000889 (myeloid suppressor cell) @@ -13032,6 +14520,10 @@ AnnotationAssertion(rdfs:comment obo:CL_0000889 "Markers: Mouse: CD11b+GR1+CD31+ AnnotationAssertion(rdfs:label obo:CL_0000889 "myeloid suppressor cell") EquivalentClasses(obo:CL_0000889 ObjectIntersectionOf(obo:CL_0000766 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001501) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001006) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001012) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050777))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000889 obo:CL_0000766) +SubClassOf(obo:CL_0000889 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001501)) +SubClassOf(obo:CL_0000889 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001006)) +SubClassOf(obo:CL_0000889 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001012)) +SubClassOf(obo:CL_0000889 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050777)) # Class: obo:CL_0000890 (alternatively activated macrophage) @@ -13042,6 +14534,8 @@ AnnotationAssertion(rdfs:comment obo:CL_0000890 "Role or process: tissue remodel AnnotationAssertion(rdfs:label obo:CL_0000890 "alternatively activated macrophage") EquivalentClasses(obo:CL_0000890 ObjectIntersectionOf(obo:CL_0000861 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001844) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0048771))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000890 obo:CL_0000861) +SubClassOf(obo:CL_0000890 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001844)) +SubClassOf(obo:CL_0000890 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0048771)) # Class: obo:CL_0000891 (foam cell) @@ -13056,6 +14550,7 @@ SubClassOf(obo:CL_0000891 obo:CL_0000000) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "PMID:30664015") obo:IAO_0000115 obo:CL_0000892 "A type of foam cell derived from a smooth muscle cell containing lipids in small vacuoles and typically seen in atherolosclerotic lesions, as well as other conditions.") AnnotationAssertion(rdfs:label obo:CL_0000892 "smooth muscle cell derived foam cell") +SubClassOf(obo:CL_0000892 obo:BFO_0000002) SubClassOf(obo:CL_0000892 obo:CL_0000891) SubClassOf(obo:CL_0000892 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000192)) @@ -13076,6 +14571,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000893 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000893 "thymocyte") EquivalentClasses(obo:CL_0000893 ObjectIntersectionOf(obo:CL_0000084 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002370) ObjectSomeValuesFrom(obo:CL_4030044 obo:GO_0045058))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000893 obo:CL_0002420) +SubClassOf(obo:CL_0000893 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002370)) # Class: obo:CL_0000894 (DN1 thymic pro-T cell) @@ -13091,6 +14587,11 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000894 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000894 "DN1 thymic pro-T cell") EquivalentClasses(obo:CL_0000894 ObjectIntersectionOf(obo:CL_0000827 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002370) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001380) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001307))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000894 obo:CL_0000827) +SubClassOf(obo:CL_0000894 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002370)) +SubClassOf(obo:CL_0000894 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004)) +SubClassOf(obo:CL_0000894 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084)) +SubClassOf(obo:CL_0000894 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001380)) +SubClassOf(obo:CL_0000894 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001307)) SubClassOf(obo:CL_0000894 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002425)) # Class: obo:CL_0000895 (naive thymus-derived CD4-positive, alpha-beta T cell) @@ -13109,6 +14610,8 @@ AnnotationAssertion(rdfs:comment obo:CL_0000895 "These cells have not been expos AnnotationAssertion(rdfs:label obo:CL_0000895 "naive thymus-derived CD4-positive, alpha-beta T cell") EquivalentClasses(obo:CL_0000895 ObjectIntersectionOf(obo:CL_0000624 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001380) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001015) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001203) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001869) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001318) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001307))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000895 obo:CL_0000624) +SubClassOf(obo:CL_0000895 obo:CL_0000898) +SubClassOf(obo:CL_0000895 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001380)) SubClassOf(obo:CL_0000895 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002436)) # Class: obo:CL_0000896 (activated CD4-positive, alpha-beta T cell) @@ -13121,6 +14624,10 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000896 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000896 "activated CD4-positive, alpha-beta T cell") EquivalentClasses(obo:CL_0000896 ObjectIntersectionOf(obo:CL_0000624 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001318) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001869) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001343) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001380))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000896 obo:CL_0000624) +SubClassOf(obo:CL_0000896 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001318)) +SubClassOf(obo:CL_0000896 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001869)) +SubClassOf(obo:CL_0000896 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001343)) +SubClassOf(obo:CL_0000896 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001380)) SubClassOf(obo:CL_0000896 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000895)) # Class: obo:CL_0000897 (CD4-positive, alpha-beta memory T cell) @@ -13137,6 +14644,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000897 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000897 "CD4-positive, alpha-beta memory T cell") EquivalentClasses(obo:CL_0000897 ObjectIntersectionOf(obo:CL_0000624 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001603) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0002286) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0043379))) SubClassOf(obo:CL_0000897 obo:CL_0000624) +SubClassOf(obo:CL_0000897 obo:CL_0000813) # Class: obo:CL_0000898 (naive T cell) @@ -13148,6 +14656,11 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000898 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000898 "naive T cell") EquivalentClasses(obo:CL_0000898 ObjectIntersectionOf(obo:CL_0002419 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001015) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001203) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001869) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0045058) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001318) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001307))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000898 obo:CL_0002419) +SubClassOf(obo:CL_0000898 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001015)) +SubClassOf(obo:CL_0000898 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001203)) +SubClassOf(obo:CL_0000898 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001869)) +SubClassOf(obo:CL_0000898 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001318)) +SubClassOf(obo:CL_0000898 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001307)) # Class: obo:CL_0000899 (T-helper 17 cell) @@ -13170,7 +14683,10 @@ AnnotationAssertion(rdfs:comment obo:CL_0000899 "This cell type is compatible wi AnnotationAssertion(rdfs:label obo:CL_0000899 "T-helper 17 cell") EquivalentClasses(obo:CL_0000899 ObjectIntersectionOf(obo:CL_0000492 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000003455) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001207) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001202) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032620))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000899 obo:CL_0000492) -SubClassOf(obo:CL_0000899 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000896)) +SubClassOf(obo:CL_0000899 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000003455)) +SubClassOf(obo:CL_0000899 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001207)) +SubClassOf(obo:CL_0000899 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001202)) +SubClassOf(obo:CL_0000899 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032620)) # Class: obo:CL_0000900 (naive thymus-derived CD8-positive, alpha-beta T cell) @@ -13187,6 +14703,8 @@ AnnotationAssertion(rdfs:comment obo:CL_0000900 "This cell traffics in secondary AnnotationAssertion(rdfs:label obo:CL_0000900 "naive thymus-derived CD8-positive, alpha-beta T cell") EquivalentClasses(obo:CL_0000900 ObjectIntersectionOf(obo:CL_0000625 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001380) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001015) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001203) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001869) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001318) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001307))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000900 obo:CL_0000625) +SubClassOf(obo:CL_0000900 obo:CL_0000898) +SubClassOf(obo:CL_0000900 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001380)) SubClassOf(obo:CL_0000900 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002437)) # Class: obo:CL_0000901 (Tr1 cell) @@ -13200,8 +14718,9 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000901 "Tr1 T-lymphocyte") AnnotationAssertion(rdfs:comment obo:CL_0000901 "These cells are reportedly induced by IL-10 and are capable of producing IFN-gamma, IL-5, IL-10, and TGF-beta.)") AnnotationAssertion(rdfs:label obo:CL_0000901 "Tr1 cell") EquivalentClasses(obo:CL_0000901 ObjectIntersectionOf(obo:CL_0000624 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032613) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050777))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000901 obo:CL_0000624) -SubClassOf(obo:CL_0000901 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000896)) +SubClassOf(obo:CL_0000901 obo:CL_0000492) +SubClassOf(obo:CL_0000901 obo:CL_0000815) +SubClassOf(obo:CL_0000901 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032613)) # Class: obo:CL_0000902 (induced T-regulatory cell) @@ -13217,6 +14736,9 @@ AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000902 "adaptive Treg") AnnotationAssertion(rdfs:label obo:CL_0000902 "induced T-regulatory cell") EquivalentClasses(obo:CL_0000902 ObjectIntersectionOf(obo:CL_0000792 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001350) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001852) ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000896))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000902 obo:CL_0000792) +SubClassOf(obo:CL_0000902 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001350)) +SubClassOf(obo:CL_0000902 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001852)) +SubClassOf(obo:CL_0000902 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000896)) # Class: obo:CL_0000903 (natural T-regulatory cell) @@ -13231,6 +14753,10 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000903 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000903 "natural T-regulatory cell") EquivalentClasses(obo:CL_0000903 ObjectIntersectionOf(obo:CL_0000792 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001350) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001318) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001852) ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000809))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000903 obo:CL_0000792) +SubClassOf(obo:CL_0000903 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001350)) +SubClassOf(obo:CL_0000903 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001318)) +SubClassOf(obo:CL_0000903 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001852)) +SubClassOf(obo:CL_0000903 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000809)) # Class: obo:CL_0000904 (central memory CD4-positive, alpha-beta T cell) @@ -13248,6 +14774,8 @@ AnnotationAssertion(rdfs:comment obo:CL_0000904 "This cell type is compatible wi AnnotationAssertion(rdfs:label obo:CL_0000904 "central memory CD4-positive, alpha-beta T cell") EquivalentClasses(obo:CL_0000904 ObjectIntersectionOf(obo:CL_0001204 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001015) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001380) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001203))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000904 obo:CL_0001204) +SubClassOf(obo:CL_0000904 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001015)) +SubClassOf(obo:CL_0000904 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001203)) # Class: obo:CL_0000905 (effector memory CD4-positive, alpha-beta T cell) @@ -13267,6 +14795,8 @@ AnnotationAssertion(rdfs:comment obo:CL_0000905 "This cell type is compatible wi AnnotationAssertion(rdfs:label obo:CL_0000905 "effector memory CD4-positive, alpha-beta T cell") EquivalentClasses(obo:CL_0000905 ObjectIntersectionOf(obo:CL_0001204 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001015) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001203) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001380))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000905 obo:CL_0001204) +SubClassOf(obo:CL_0000905 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001015)) +SubClassOf(obo:CL_0000905 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001203)) # Class: obo:CL_0000906 (activated CD8-positive, alpha-beta T cell) @@ -13278,6 +14808,11 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000906 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000906 "activated CD8-positive, alpha-beta T cell") EquivalentClasses(obo:CL_0000906 ObjectIntersectionOf(obo:CL_0000625 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001203) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001318) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001869) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001343) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001380))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000906 obo:CL_0000625) +SubClassOf(obo:CL_0000906 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001203)) +SubClassOf(obo:CL_0000906 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001318)) +SubClassOf(obo:CL_0000906 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001869)) +SubClassOf(obo:CL_0000906 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001343)) +SubClassOf(obo:CL_0000906 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001380)) SubClassOf(obo:CL_0000906 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000900)) # Class: obo:CL_0000907 (central memory CD8-positive, alpha-beta T cell) @@ -13296,6 +14831,8 @@ AnnotationAssertion(rdfs:comment obo:CL_0000907 "This cell type is compatible wi AnnotationAssertion(rdfs:label obo:CL_0000907 "central memory CD8-positive, alpha-beta T cell") EquivalentClasses(obo:CL_0000907 ObjectIntersectionOf(obo:CL_0001203 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001015) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001380) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001203))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000907 obo:CL_0001203) +SubClassOf(obo:CL_0000907 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001015)) +SubClassOf(obo:CL_0000907 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001203)) # Class: obo:CL_0000908 (CD8-positive, alpha-beta cytokine secreting effector T cell) @@ -13307,7 +14844,13 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000908 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000908 "CD8-positive, alpha-beta cytokine secreting effector T cell") EquivalentClasses(obo:CL_0000908 ObjectIntersectionOf(obo:CL_0000625 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001318) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001869) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001343) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001380) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001816) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0030217))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000908 obo:CL_0000625) +SubClassOf(obo:CL_0000908 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001318)) +SubClassOf(obo:CL_0000908 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001869)) +SubClassOf(obo:CL_0000908 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001343)) +SubClassOf(obo:CL_0000908 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001380)) SubClassOf(obo:CL_0000908 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000906)) +SubClassOf(obo:CL_0000908 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001816)) +SubClassOf(obo:CL_0000908 ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0030217)) # Class: obo:CL_0000909 (CD8-positive, alpha-beta memory T cell) @@ -13322,6 +14865,8 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000909 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0000909 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000909 "CD8-positive, alpha-beta memory T cell") EquivalentClasses(obo:CL_0000909 ObjectIntersectionOf(obo:CL_0000625 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001603) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0002286) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0043379))) +SubClassOf(obo:CL_0000909 obo:CL_0000625) +SubClassOf(obo:CL_0000909 obo:CL_0000813) # Class: obo:CL_0000910 (cytotoxic T cell) @@ -13338,6 +14883,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000910 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000910 "cytotoxic T cell") EquivalentClasses(obo:CL_0000910 ObjectIntersectionOf(obo:CL_0000911 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001913))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000910 obo:CL_0000911) +SubClassOf(obo:CL_0000910 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001913)) # Class: obo:CL_0000911 (effector T cell) @@ -13348,6 +14894,8 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000911 "effector T-lymphocy AnnotationAssertion(rdfs:label obo:CL_0000911 "effector T cell") EquivalentClasses(obo:CL_0000911 ObjectIntersectionOf(obo:CL_0002419 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0045026) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0030217) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0045058))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000911 obo:CL_0002419) +SubClassOf(obo:CL_0000911 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0045026)) +SubClassOf(obo:CL_0000911 ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0030217)) # Class: obo:CL_0000912 (helper T cell) @@ -13362,6 +14910,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000912 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000912 "helper T cell") EquivalentClasses(obo:CL_0000912 ObjectIntersectionOf(obo:CL_0000911 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001816))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000912 obo:CL_0000911) +SubClassOf(obo:CL_0000912 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001816)) # Class: obo:CL_0000913 (effector memory CD8-positive, alpha-beta T cell) @@ -13381,6 +14930,8 @@ AnnotationAssertion(rdfs:comment obo:CL_0000913 "This cell type is compatible wi AnnotationAssertion(rdfs:label obo:CL_0000913 "effector memory CD8-positive, alpha-beta T cell") EquivalentClasses(obo:CL_0000913 ObjectIntersectionOf(obo:CL_0001203 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001015) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001203) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001380))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000913 obo:CL_0001203) +SubClassOf(obo:CL_0000913 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001015)) +SubClassOf(obo:CL_0000913 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001203)) # Class: obo:CL_0000914 (immature NK T cell) @@ -13395,6 +14946,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000914 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000914 "immature NK T cell") EquivalentClasses(obo:CL_0000914 ObjectIntersectionOf(obo:CL_0000790 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000003469))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000914 obo:CL_0000790) +SubClassOf(obo:CL_0000914 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000003469)) SubClassOf(obo:CL_0000914 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000809)) # Class: obo:CL_0000915 (CD8-alpha-alpha-positive, alpha-beta intraepithelial T cell) @@ -13409,6 +14961,9 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000915 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000915 "CD8-alpha-alpha-positive, alpha-beta intraepithelial T cell") EquivalentClasses(obo:CL_0000915 ObjectIntersectionOf(obo:CL_0000797 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001083) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001839) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001084))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000915 obo:CL_0000797) +SubClassOf(obo:CL_0000915 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001083)) +SubClassOf(obo:CL_0000915 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001839)) +SubClassOf(obo:CL_0000915 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001084)) SubClassOf(obo:CL_0000915 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000811)) # Class: obo:CL_0000916 (dendritic epidermal T cell) @@ -13422,7 +14977,9 @@ AnnotationAssertion(rdfs:comment obo:CL_0000916 "In mice, DETC have an invariant AnnotationAssertion(rdfs:label obo:CL_0000916 "dendritic epidermal T cell") EquivalentClasses(obo:CL_0000916 ObjectIntersectionOf(obo:CL_0000800 ObjectSomeValuesFrom(obo:RO_0001025 obo:UBERON_0001003) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0060054))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000916 obo:CL_0000800) +SubClassOf(obo:CL_0000916 ObjectSomeValuesFrom(obo:RO_0001025 obo:UBERON_0001003)) SubClassOf(obo:CL_0000916 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002401)) +SubClassOf(obo:CL_0000916 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0060054)) # Class: obo:CL_0000917 (Tc1 cell) @@ -13443,6 +15000,11 @@ AnnotationAssertion(rdfs:comment obo:CL_0000917 "This cell type is compatible wi AnnotationAssertion(rdfs:label obo:CL_0000917 "Tc1 cell") EquivalentClasses(obo:CL_0000917 ObjectIntersectionOf(obo:CL_0000908 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001835) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000003463) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001202) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001207) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032609))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000917 obo:CL_0000908) +SubClassOf(obo:CL_0000917 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001835)) +SubClassOf(obo:CL_0000917 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000003463)) +SubClassOf(obo:CL_0000917 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001202)) +SubClassOf(obo:CL_0000917 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001207)) +SubClassOf(obo:CL_0000917 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032609)) # Class: obo:CL_0000918 (Tc2 cell) @@ -13461,6 +15023,9 @@ AnnotationAssertion(rdfs:comment obo:CL_0000918 "This cell type is compatible wi AnnotationAssertion(rdfs:label obo:CL_0000918 "Tc2 cell") EquivalentClasses(obo:CL_0000918 ObjectIntersectionOf(obo:CL_0000908 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001941) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001202) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001207) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032633))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000918 obo:CL_0000908) +SubClassOf(obo:CL_0000918 obo:CL_0001052) +SubClassOf(obo:CL_0000918 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001941)) +SubClassOf(obo:CL_0000918 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032633)) # Class: obo:CL_0000919 (CD8-positive, CD25-positive, alpha-beta regulatory T cell) @@ -13478,6 +15043,8 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000919 "CD8-positive, CD25- AnnotationAssertion(rdfs:label obo:CL_0000919 "CD8-positive, CD25-positive, alpha-beta regulatory T cell") EquivalentClasses(obo:CL_0000919 ObjectIntersectionOf(obo:CL_0000795 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001350) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001380))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000919 obo:CL_0000795) +SubClassOf(obo:CL_0000919 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001350)) +SubClassOf(obo:CL_0000919 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001380)) SubClassOf(obo:CL_0000919 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000906)) # Class: obo:CL_0000920 (CD8-positive, CD28-negative, alpha-beta regulatory T cell) @@ -13497,6 +15064,8 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000920 "CD8-positive, CD28- AnnotationAssertion(rdfs:label obo:CL_0000920 "CD8-positive, CD28-negative, alpha-beta regulatory T cell") EquivalentClasses(obo:CL_0000920 ObjectIntersectionOf(obo:CL_0000795 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001350) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001841))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000920 obo:CL_0000795) +SubClassOf(obo:CL_0000920 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001350)) +SubClassOf(obo:CL_0000920 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001841)) SubClassOf(obo:CL_0000920 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000906)) # Class: obo:CL_0000921 (type I NK T cell) @@ -13515,6 +15084,7 @@ AnnotationAssertion(rdfs:comment obo:CL_0000921 "In mouse the canonical TCR is V AnnotationAssertion(rdfs:label obo:CL_0000921 "type I NK T cell") EquivalentClasses(obo:CL_0000921 ObjectIntersectionOf(obo:CL_0000814 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0043208))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000921 obo:CL_0000814) +SubClassOf(obo:CL_0000921 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0043208)) # Class: obo:CL_0000922 (type II NK T cell) @@ -13527,6 +15097,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000922 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000922 "type II NK T cell") EquivalentClasses(obo:CL_0000922 ObjectIntersectionOf(obo:CL_0000814 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002288))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000922 obo:CL_0000814) +SubClassOf(obo:CL_0000922 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002288)) # Class: obo:CL_0000923 (CD4-positive type I NK T cell) @@ -13539,6 +15110,7 @@ AnnotationAssertion(oboInOwl:hasNarrowSynonym obo:CL_0000923 "NKT.4+.SP") AnnotationAssertion(rdfs:label obo:CL_0000923 "CD4-positive type I NK T cell") EquivalentClasses(obo:CL_0000923 ObjectIntersectionOf(obo:CL_0000921 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001004))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000923 obo:CL_0000921) +SubClassOf(obo:CL_0000923 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001004)) # Class: obo:CL_0000924 (CD4-negative, CD8-negative type I NK T cell) @@ -13551,6 +15123,8 @@ AnnotationAssertion(oboInOwl:hasNarrowSynonym obo:CL_0000924 "NKT.4-.Sp") AnnotationAssertion(rdfs:label obo:CL_0000924 "CD4-negative, CD8-negative type I NK T cell") EquivalentClasses(obo:CL_0000924 ObjectIntersectionOf(obo:CL_0000921 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000924 obo:CL_0000921) +SubClassOf(obo:CL_0000924 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004)) +SubClassOf(obo:CL_0000924 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084)) # Class: obo:CL_0000925 (activated CD4-positive type I NK T cell) @@ -13561,8 +15135,11 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000925 "activated CD4-posit AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000925 "activated CD4-positive type I NKT cell") AnnotationAssertion(rdfs:label obo:CL_0000925 "activated CD4-positive type I NK T cell") EquivalentClasses(obo:CL_0000925 ObjectIntersectionOf(obo:CL_0000921 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001004) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001343) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032609) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032633))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000925 obo:CL_0000921) +SubClassOf(obo:CL_0000925 obo:CL_0000923) +SubClassOf(obo:CL_0000925 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001343)) SubClassOf(obo:CL_0000925 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000923)) +SubClassOf(obo:CL_0000925 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032609)) +SubClassOf(obo:CL_0000925 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032633)) # Class: obo:CL_0000926 (CD4-positive type I NK T cell secreting interferon-gamma) @@ -13574,8 +15151,10 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000926 "CD4-positive type I AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000926 "CD4-positive type I NKT cell secreting interferon-gamma") AnnotationAssertion(rdfs:label obo:CL_0000926 "CD4-positive type I NK T cell secreting interferon-gamma") EquivalentClasses(obo:CL_0000926 ObjectIntersectionOf(obo:CL_0000921 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001004) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002827) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032609))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000926 obo:CL_0000921) +SubClassOf(obo:CL_0000926 obo:CL_0000923) SubClassOf(obo:CL_0000926 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000925)) +SubClassOf(obo:CL_0000926 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002827)) +SubClassOf(obo:CL_0000926 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032609)) # Class: obo:CL_0000927 (CD4-positive type I NK T cell secreting interleukin-4) @@ -13587,8 +15166,11 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000927 "CD4-positive type I AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000927 "CD4-positive type I NKT cell secreting interleukin-4") AnnotationAssertion(rdfs:label obo:CL_0000927 "CD4-positive type I NK T cell secreting interleukin-4") EquivalentClasses(obo:CL_0000927 ObjectIntersectionOf(obo:CL_0000921 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001004) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002830) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032616) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032633))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000927 obo:CL_0000921) +SubClassOf(obo:CL_0000927 obo:CL_0000923) SubClassOf(obo:CL_0000927 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000925)) +SubClassOf(obo:CL_0000927 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002830)) +SubClassOf(obo:CL_0000927 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032616)) +SubClassOf(obo:CL_0000927 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032633)) # Class: obo:CL_0000928 (activated CD4-negative, CD8-negative type I NK T cell) @@ -13599,8 +15181,10 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000928 "activated CD4-negat AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000928 "activated CD4-negative, CD8-negative type I NKT cell") AnnotationAssertion(rdfs:label obo:CL_0000928 "activated CD4-negative, CD8-negative type I NK T cell") EquivalentClasses(obo:CL_0000928 ObjectIntersectionOf(obo:CL_0000921 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001343) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002369))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000928 obo:CL_0000921) +SubClassOf(obo:CL_0000928 obo:CL_0000924) +SubClassOf(obo:CL_0000928 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001343)) SubClassOf(obo:CL_0000928 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000924)) +SubClassOf(obo:CL_0000928 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002369)) # Class: obo:CL_0000929 (CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma) @@ -13612,8 +15196,10 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000929 "CD4-negative, CD8-n AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000929 "CD4-negative, CD8-negative type I NKT cell secreting interferon-gamma") AnnotationAssertion(rdfs:label obo:CL_0000929 "CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma") EquivalentClasses(obo:CL_0000929 ObjectIntersectionOf(obo:CL_0000921 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002827) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032609))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000929 obo:CL_0000921) +SubClassOf(obo:CL_0000929 obo:CL_0000924) SubClassOf(obo:CL_0000929 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000928)) +SubClassOf(obo:CL_0000929 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002827)) +SubClassOf(obo:CL_0000929 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032609)) # Class: obo:CL_0000930 (CD4-negative, CD8-negative type I NK T cell secreting interleukin-4) @@ -13625,8 +15211,10 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000930 "CD4-negative, CD8-n AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000930 "CD4-negative, CD8-negative type I NKT cell secreting interleukin-4") AnnotationAssertion(rdfs:label obo:CL_0000930 "CD4-negative, CD8-negative type I NK T cell secreting interleukin-4") EquivalentClasses(obo:CL_0000930 ObjectIntersectionOf(obo:CL_0000921 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002830) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032633))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000930 obo:CL_0000921) +SubClassOf(obo:CL_0000930 obo:CL_0000924) SubClassOf(obo:CL_0000930 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000928)) +SubClassOf(obo:CL_0000930 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002830)) +SubClassOf(obo:CL_0000930 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032633)) # Class: obo:CL_0000931 (activated type II NK T cell) @@ -13639,6 +15227,8 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000931 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000931 "activated type II NK T cell") EquivalentClasses(obo:CL_0000931 ObjectIntersectionOf(obo:CL_0000922 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001343) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002369))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000931 obo:CL_0000922) +SubClassOf(obo:CL_0000931 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001343)) +SubClassOf(obo:CL_0000931 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002369)) # Class: obo:CL_0000932 (type II NK T cell secreting interferon-gamma) @@ -13651,7 +15241,9 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000932 "type II NKT cell se AnnotationAssertion(rdfs:label obo:CL_0000932 "type II NK T cell secreting interferon-gamma") EquivalentClasses(obo:CL_0000932 ObjectIntersectionOf(obo:CL_0000922 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001343) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032609))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000932 obo:CL_0000922) +SubClassOf(obo:CL_0000932 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001343)) SubClassOf(obo:CL_0000932 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000931)) +SubClassOf(obo:CL_0000932 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032609)) # Class: obo:CL_0000933 (type II NK T cell secreting interleukin-4) @@ -13664,7 +15256,9 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000933 "type II NKT cell se AnnotationAssertion(rdfs:label obo:CL_0000933 "type II NK T cell secreting interleukin-4") EquivalentClasses(obo:CL_0000933 ObjectIntersectionOf(obo:CL_0000922 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001343) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032633))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000933 obo:CL_0000922) +SubClassOf(obo:CL_0000933 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001343)) SubClassOf(obo:CL_0000933 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000931)) +SubClassOf(obo:CL_0000933 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032633)) # Class: obo:CL_0000934 (CD4-positive, alpha-beta cytotoxic T cell) @@ -13679,6 +15273,8 @@ AnnotationAssertion(rdfs:label obo:CL_0000934 "CD4-positive, alpha-beta cytotoxi EquivalentClasses(obo:CL_0000934 ObjectIntersectionOf(obo:CL_0000624 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001913) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0030217))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000934 obo:CL_0000624) SubClassOf(obo:CL_0000934 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000896)) +SubClassOf(obo:CL_0000934 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001913)) +SubClassOf(obo:CL_0000934 ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0030217)) # Class: obo:CL_0000935 (CD4-negative, CD8-negative, alpha-beta intraepithelial T cell) @@ -13691,6 +15287,8 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000935 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000935 "CD4-negative, CD8-negative, alpha-beta intraepithelial T cell") EquivalentClasses(obo:CL_0000935 ObjectIntersectionOf(obo:CL_0000797 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000025403))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000935 obo:CL_0000797) +SubClassOf(obo:CL_0000935 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004)) +SubClassOf(obo:CL_0000935 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000025403)) # Class: obo:CL_0000936 (early lymphoid progenitor) @@ -13706,7 +15304,13 @@ AnnotationAssertion(rdfs:comment obo:CL_0000936 "Markers are associated with mou AnnotationAssertion(rdfs:label obo:CL_0000936 "early lymphoid progenitor") EquivalentClasses(obo:CL_0000936 ObjectIntersectionOf(obo:CL_0000837 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001024) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001460) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002001) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002065) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002979) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030098))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000936 obo:CL_0000837) +SubClassOf(obo:CL_0000936 obo:CL_0011026) +SubClassOf(obo:CL_0000936 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001460)) +SubClassOf(obo:CL_0000936 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002001)) +SubClassOf(obo:CL_0000936 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002065)) +SubClassOf(obo:CL_0000936 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002979)) SubClassOf(obo:CL_0000936 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002035)) +SubClassOf(obo:CL_0000936 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030098)) # Class: obo:CL_0000937 (pre-natural killer cell) @@ -13716,6 +15320,10 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000937 cl:cellxgene_subset) AnnotationAssertion(rdfs:comment obo:CL_0000937 "These cells are also reportedly CD7-low, CD10-negative, CD45RA-positive, alpha-4-beta-7 integrin-high.") AnnotationAssertion(rdfs:label obo:CL_0000937 "pre-natural killer cell") EquivalentClasses(obo:CL_0000937 ObjectIntersectionOf(obo:CL_0000623 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001381) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002065))) +SubClassOf(obo:CL_0000937 obo:CL_0000623) +SubClassOf(obo:CL_0000937 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003)) +SubClassOf(obo:CL_0000937 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001381)) +SubClassOf(obo:CL_0000937 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002065)) # Class: obo:CL_0000938 (CD16-negative, CD56-bright natural killer cell, human) @@ -13730,6 +15338,12 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000938 core:human_reference_atlas) AnnotationAssertion(rdfs:comment obo:CL_0000938 "This cell type is compatible with the HIPC Lyoplate markers for 'CD16-CD56bright NK cell'. Markers are associated with human cell types.") AnnotationAssertion(rdfs:label obo:CL_0000938 "CD16-negative, CD56-bright natural killer cell, human") EquivalentClasses(obo:CL_0000938 ObjectIntersectionOf(obo:CL_0000824 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001483) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002015) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001319) ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_9606) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032609) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001024))) +SubClassOf(obo:CL_0000938 obo:CL_0000824) +SubClassOf(obo:CL_0000938 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001483)) +SubClassOf(obo:CL_0000938 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002015)) +SubClassOf(obo:CL_0000938 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001319)) +SubClassOf(obo:CL_0000938 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_9606)) +SubClassOf(obo:CL_0000938 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001024)) # Class: obo:CL_0000939 (CD16-positive, CD56-dim natural killer cell, human) @@ -13746,6 +15360,12 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000939 cl:cellxgene_subset) AnnotationAssertion(rdfs:comment obo:CL_0000939 "This cell type is compatible with the HIPC Lyoplate markers for 'CD16+CD56+ NK cell'. Markers are associated with human cell types.") AnnotationAssertion(rdfs:label obo:CL_0000939 "CD16-positive, CD56-dim natural killer cell, human") EquivalentClasses(obo:CL_0000939 ObjectIntersectionOf(obo:CL_0000824 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002015) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001483) ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_9606) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001816) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0042267) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001024))) +SubClassOf(obo:CL_0000939 obo:CL_0000824) +SubClassOf(obo:CL_0000939 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002015)) +SubClassOf(obo:CL_0000939 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001483)) +SubClassOf(obo:CL_0000939 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_9606)) +SubClassOf(obo:CL_0000939 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0042267)) +SubClassOf(obo:CL_0000939 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001024)) # Class: obo:CL_0000940 (mucosal invariant T cell) @@ -13759,6 +15379,9 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000940 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000940 "mucosal invariant T cell") EquivalentClasses(obo:CL_0000940 ObjectIntersectionOf(obo:CL_0000791 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002227) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032394) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0030217))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000940 obo:CL_0000791) +SubClassOf(obo:CL_0000940 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002227)) +SubClassOf(obo:CL_0000940 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032394)) +SubClassOf(obo:CL_0000940 ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0030217)) # Class: obo:CL_0000941 (thymic conventional dendritic cell) @@ -13767,6 +15390,10 @@ AnnotationAssertion(rdfs:comment obo:CL_0000941 "In the mouse this cell expresse AnnotationAssertion(rdfs:label obo:CL_0000941 "thymic conventional dendritic cell") EquivalentClasses(obo:CL_0000941 ObjectIntersectionOf(obo:CL_0000990 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002370) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001015) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001013))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000941 obo:CL_0000990) +SubClassOf(obo:CL_0000941 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002370)) +SubClassOf(obo:CL_0000941 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012)) +SubClassOf(obo:CL_0000941 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001015)) +SubClassOf(obo:CL_0000941 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001013)) SubClassOf(obo:CL_0000941 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000894)) # Class: obo:CL_0000942 (thymic plasmacytoid dendritic cell) @@ -13777,6 +15404,9 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000942 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0000942 "thymic plasmacytoid dendritic cell") EquivalentClasses(obo:CL_0000942 ObjectIntersectionOf(obo:CL_0000784 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001015) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001865))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000942 obo:CL_0000784) +SubClassOf(obo:CL_0000942 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012)) +SubClassOf(obo:CL_0000942 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001015)) +SubClassOf(obo:CL_0000942 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001865)) SubClassOf(obo:CL_0000942 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000894)) # Class: obo:CL_0000943 (Be1 Cell) @@ -13788,6 +15418,10 @@ AnnotationAssertion(rdfs:comment obo:CL_0000943 "Be1 cells are also reportedly c AnnotationAssertion(rdfs:label obo:CL_0000943 "Be1 Cell") EquivalentClasses(obo:CL_0000943 ObjectIntersectionOf(obo:CL_0000968 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032609) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032623) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032640) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045627))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000943 obo:CL_0000968) +SubClassOf(obo:CL_0000943 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032609)) +SubClassOf(obo:CL_0000943 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032623)) +SubClassOf(obo:CL_0000943 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032640)) +SubClassOf(obo:CL_0000943 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045627)) # Class: obo:CL_0000944 (Be2 cell) @@ -13798,6 +15432,11 @@ AnnotationAssertion(rdfs:comment obo:CL_0000944 "Be2 cells are also reportedly c AnnotationAssertion(rdfs:label obo:CL_0000944 "Be2 cell") EquivalentClasses(obo:CL_0000944 ObjectIntersectionOf(obo:CL_0000968 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032613) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032623) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032633) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032635) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045630))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000944 obo:CL_0000968) +SubClassOf(obo:CL_0000944 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032613)) +SubClassOf(obo:CL_0000944 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032623)) +SubClassOf(obo:CL_0000944 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032633)) +SubClassOf(obo:CL_0000944 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032635)) +SubClassOf(obo:CL_0000944 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045630)) # Class: obo:CL_0000945 (lymphocyte of B lineage) @@ -13815,6 +15454,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl AnnotationAssertion(rdfs:label obo:CL_0000946 "antibody secreting cell") EquivalentClasses(obo:CL_0000946 ObjectIntersectionOf(obo:CL_0000945 ObjectSomeValuesFrom(obo:RO_0003000 obo:GO_0042571))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000946 obo:CL_0000945) +SubClassOf(obo:CL_0000946 ObjectSomeValuesFrom(obo:RO_0003000 obo:GO_0042571)) # Class: obo:CL_0000947 (IgE plasma cell) @@ -13822,6 +15462,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:msz") Annotation(oboInOwl AnnotationAssertion(rdfs:label obo:CL_0000947 "IgE plasma cell") EquivalentClasses(obo:CL_0000947 ObjectIntersectionOf(obo:CL_0000974 ObjectSomeValuesFrom(obo:RO_0003000 obo:GO_0071743))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000947 obo:CL_0000974) +SubClassOf(obo:CL_0000947 ObjectSomeValuesFrom(obo:RO_0003000 obo:GO_0071743)) # Class: obo:CL_0000948 (IgE memory B cell) @@ -13836,6 +15477,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000948 "memory IgE B-lympho AnnotationAssertion(rdfs:label obo:CL_0000948 "IgE memory B cell") EquivalentClasses(obo:CL_0000948 ObjectIntersectionOf(obo:CL_0000972 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071742))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000948 obo:CL_0000972) +SubClassOf(obo:CL_0000948 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071742)) # Class: obo:CL_0000949 (IgD plasmablast) @@ -13843,6 +15485,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:msz") Annotation(oboInOwl AnnotationAssertion(rdfs:label obo:CL_0000949 "IgD plasmablast") EquivalentClasses(obo:CL_0000949 ObjectIntersectionOf(obo:CL_0000980 ObjectSomeValuesFrom(obo:RO_0003000 obo:GO_0071739))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000949 obo:CL_0000980) +SubClassOf(obo:CL_0000949 ObjectSomeValuesFrom(obo:RO_0003000 obo:GO_0071739)) # Class: obo:CL_0000950 (IgE plasmablast) @@ -13850,6 +15493,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:msz") Annotation(oboInOwl AnnotationAssertion(rdfs:label obo:CL_0000950 "IgE plasmablast") EquivalentClasses(obo:CL_0000950 ObjectIntersectionOf(obo:CL_0000980 ObjectSomeValuesFrom(obo:RO_0003000 obo:GO_0071743))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000950 obo:CL_0000980) +SubClassOf(obo:CL_0000950 ObjectSomeValuesFrom(obo:RO_0003000 obo:GO_0071743)) # Class: obo:CL_0000951 (IgE short lived plasma cell) @@ -13857,6 +15501,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:msz") Annotation(oboInOwl AnnotationAssertion(rdfs:label obo:CL_0000951 "IgE short lived plasma cell") EquivalentClasses(obo:CL_0000951 ObjectIntersectionOf(obo:CL_0000975 ObjectSomeValuesFrom(obo:RO_0003000 obo:GO_0071743))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000951 obo:CL_0000975) +SubClassOf(obo:CL_0000951 ObjectSomeValuesFrom(obo:RO_0003000 obo:GO_0071743)) # Class: obo:CL_0000952 (preBCR-positive large pre-B-II cell) @@ -13864,6 +15509,10 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:rhs") Annotation(oboInOwl AnnotationAssertion(rdfs:label obo:CL_0000952 "preBCR-positive large pre-B-II cell") EquivalentClasses(obo:CL_0000952 ObjectIntersectionOf(obo:CL_0000957 ObjectSomeValuesFrom(obo:CL_4030044 obo:GO_0071708) ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0035369) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001858) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001859))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000952 obo:CL_0000957) +SubClassOf(obo:CL_0000952 ObjectSomeValuesFrom(obo:CL_4030044 obo:GO_0071708)) +SubClassOf(obo:CL_0000952 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0035369)) +SubClassOf(obo:CL_0000952 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001858)) +SubClassOf(obo:CL_0000952 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001859)) # Class: obo:CL_0000953 (preBCR-negative large pre-B-II cell) @@ -13871,6 +15520,10 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:rhs") Annotation(oboInOwl AnnotationAssertion(rdfs:label obo:CL_0000953 "preBCR-negative large pre-B-II cell") EquivalentClasses(obo:CL_0000953 ObjectIntersectionOf(obo:CL_0000957 ObjectSomeValuesFrom(obo:CL_4030044 obo:GO_0071708) ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0035369) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001858) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001859))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000953 obo:CL_0000957) +SubClassOf(obo:CL_0000953 ObjectSomeValuesFrom(obo:CL_4030044 obo:GO_0071708)) +SubClassOf(obo:CL_0000953 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0035369)) +SubClassOf(obo:CL_0000953 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001858)) +SubClassOf(obo:CL_0000953 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001859)) # Class: obo:CL_0000954 (small pre-B-II cell) @@ -13881,6 +15534,11 @@ AnnotationAssertion(rdfs:comment obo:CL_0000954 "Small pre-B-II cells are also r AnnotationAssertion(rdfs:label obo:CL_0000954 "small pre-B-II cell") EquivalentClasses(obo:CL_0000954 ObjectIntersectionOf(obo:CL_0000955 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000003457) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000003460) ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0019815) ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0035369) ObjectSomeValuesFrom(obo:RO_0000056 obo:GO_0071708))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000954 obo:CL_0000955) +SubClassOf(obo:CL_0000954 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000003457)) +SubClassOf(obo:CL_0000954 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000003460)) +SubClassOf(obo:CL_0000954 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0019815)) +SubClassOf(obo:CL_0000954 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0035369)) +SubClassOf(obo:CL_0000954 ObjectSomeValuesFrom(obo:RO_0000056 obo:GO_0071708)) # Class: obo:CL_0000955 (pre-B-II cell) @@ -13893,7 +15551,9 @@ AnnotationAssertion(rdfs:comment obo:CL_0000955 "pre-B-II cell are also reported AnnotationAssertion(rdfs:label obo:CL_0000955 "pre-B-II cell") EquivalentClasses(obo:CL_0000955 ObjectIntersectionOf(obo:CL_0000817 ObjectSomeValuesFrom(obo:CL_4030045 obo:PR_000006611) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001003) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0071707))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000955 obo:CL_0000817) -SubClassOf(obo:CL_0000955 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000826)) +SubClassOf(obo:CL_0000955 ObjectSomeValuesFrom(obo:CL_4030045 obo:PR_000006611)) +SubClassOf(obo:CL_0000955 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001003)) +SubClassOf(obo:CL_0000955 ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0071707)) DisjointClasses(obo:CL_0000955 obo:CL_0000956) # Class: obo:CL_0000956 (pre-B-I cell) @@ -13906,7 +15566,13 @@ AnnotationAssertion(rdfs:comment obo:CL_0000956 "Human pre-B-I cells are reporte AnnotationAssertion(rdfs:label obo:CL_0000956 "pre-B-I cell") EquivalentClasses(obo:CL_0000956 ObjectIntersectionOf(obo:CL_0000817 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000003457) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000003460) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000006611) ObjectSomeValuesFrom(obo:RO_0000056 obo:GO_0071707) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001858) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001859))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000956 obo:CL_0000817) -SubClassOf(obo:CL_0000956 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000826)) +SubClassOf(obo:CL_0000956 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000003457)) +SubClassOf(obo:CL_0000956 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000003460)) +SubClassOf(obo:CL_0000956 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000006611)) +SubClassOf(obo:CL_0000956 ObjectSomeValuesFrom(obo:RO_0000056 obo:GO_0071707)) +SubClassOf(obo:CL_0000956 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003)) +SubClassOf(obo:CL_0000956 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001858)) +SubClassOf(obo:CL_0000956 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001859)) # Class: obo:CL_0000957 (large pre-B-II cell) @@ -13918,6 +15584,9 @@ AnnotationAssertion(rdfs:comment obo:CL_0000957 "Large pre-B-II cells are also r AnnotationAssertion(rdfs:label obo:CL_0000957 "large pre-B-II cell") EquivalentClasses(obo:CL_0000957 ObjectIntersectionOf(obo:CL_0000955 ObjectSomeValuesFrom(obo:CL_4030045 obo:PR_000003457) ObjectSomeValuesFrom(obo:CL_4030045 obo:PR_000003460) ObjectSomeValuesFrom(obo:RO_0000056 obo:GO_0046651))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000957 obo:CL_0000955) +SubClassOf(obo:CL_0000957 ObjectSomeValuesFrom(obo:CL_4030045 obo:PR_000003457)) +SubClassOf(obo:CL_0000957 ObjectSomeValuesFrom(obo:CL_4030045 obo:PR_000003460)) +SubClassOf(obo:CL_0000957 ObjectSomeValuesFrom(obo:RO_0000056 obo:GO_0046651)) # Class: obo:CL_0000958 (T1 B cell) @@ -13930,6 +15599,11 @@ AnnotationAssertion(rdfs:comment obo:CL_0000958 "T1 B cells are also reportedly AnnotationAssertion(rdfs:label obo:CL_0000958 "T1 B cell") EquivalentClasses(obo:CL_0000958 ObjectIntersectionOf(obo:CL_0000818 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0071738) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001318) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001338) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001880) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002037))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000958 obo:CL_0000818) +SubClassOf(obo:CL_0000958 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0071738)) +SubClassOf(obo:CL_0000958 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001318)) +SubClassOf(obo:CL_0000958 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001338)) +SubClassOf(obo:CL_0000958 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001880)) +SubClassOf(obo:CL_0000958 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002037)) # Class: obo:CL_0000959 (T2 B cell) @@ -13942,6 +15616,11 @@ AnnotationAssertion(rdfs:comment obo:CL_0000959 "T2 B cells are also reportedly AnnotationAssertion(rdfs:label obo:CL_0000959 "T2 B cell") EquivalentClasses(obo:CL_0000959 ObjectIntersectionOf(obo:CL_0000818 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001318) ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071738) ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071753) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001338) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001880) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002037))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000959 obo:CL_0000818) +SubClassOf(obo:CL_0000959 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001318)) +SubClassOf(obo:CL_0000959 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071738)) +SubClassOf(obo:CL_0000959 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001338)) +SubClassOf(obo:CL_0000959 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001880)) +SubClassOf(obo:CL_0000959 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002037)) SubClassOf(obo:CL_0000959 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000958)) # Class: obo:CL_0000960 (T3 B cell) @@ -13955,6 +15634,11 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000960 "transitional stage AnnotationAssertion(rdfs:label obo:CL_0000960 "T3 B cell") EquivalentClasses(obo:CL_0000960 ObjectIntersectionOf(obo:CL_0000818 ObjectSomeValuesFrom(obo:RO_0000056 obo:GO_0002515) ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071738) ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071753) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001318) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001338) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001880))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000960 obo:CL_0000818) +SubClassOf(obo:CL_0000960 ObjectSomeValuesFrom(obo:RO_0000056 obo:GO_0002515)) +SubClassOf(obo:CL_0000960 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071738)) +SubClassOf(obo:CL_0000960 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001318)) +SubClassOf(obo:CL_0000960 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001338)) +SubClassOf(obo:CL_0000960 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001880)) SubClassOf(obo:CL_0000960 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000959)) # Class: obo:CL_0000961 (Bm1 B cell) @@ -13967,7 +15651,8 @@ AnnotationAssertion(rdfs:comment obo:CL_0000961 "These cells are also reportedly AnnotationAssertion(rdfs:label obo:CL_0000961 "Bm1 B cell") EquivalentClasses(obo:CL_0000961 ObjectIntersectionOf(obo:CL_0000843 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001408) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001880) ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071738))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000961 obo:CL_0000843) -SubClassOf(obo:CL_0000961 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000818)) +SubClassOf(obo:CL_0000961 obo:CL_0002056) +SubClassOf(obo:CL_0000961 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001408)) # Class: obo:CL_0000962 (Bm2 B cell) @@ -13979,6 +15664,8 @@ AnnotationAssertion(rdfs:comment obo:CL_0000962 "These cells are also CD10-negat AnnotationAssertion(rdfs:label obo:CL_0000962 "Bm2 B cell") EquivalentClasses(obo:CL_0000962 ObjectIntersectionOf(obo:CL_0000843 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071738) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001880))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000962 obo:CL_0000843) +SubClassOf(obo:CL_0000962 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408)) +SubClassOf(obo:CL_0000962 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001880)) SubClassOf(obo:CL_0000962 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000961)) # Class: obo:CL_0000963 (Bm3-delta B cell) @@ -13990,6 +15677,9 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000963 "Bm3-delta B-lymphoc AnnotationAssertion(rdfs:label obo:CL_0000963 "Bm3-delta B cell") EquivalentClasses(obo:CL_0000963 ObjectIntersectionOf(obo:CL_0000844 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0071753) ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071738) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000963 obo:CL_0000844) +SubClassOf(obo:CL_0000963 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0071753)) +SubClassOf(obo:CL_0000963 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071738)) +SubClassOf(obo:CL_0000963 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408)) SubClassOf(obo:CL_0000963 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000965)) # Class: obo:CL_0000964 (Bm2' B cell) @@ -14004,7 +15694,11 @@ AnnotationAssertion(rdfs:comment obo:CL_0000964 "Bm2' B cells are also reportedl AnnotationAssertion(rdfs:label obo:CL_0000964 "Bm2' B cell") EquivalentClasses(obo:CL_0000964 ObjectIntersectionOf(obo:CL_0000844 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001880) ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071738) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002634))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000964 obo:CL_0000844) +SubClassOf(obo:CL_0000964 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001880)) +SubClassOf(obo:CL_0000964 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071738)) +SubClassOf(obo:CL_0000964 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408)) SubClassOf(obo:CL_0000964 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000962)) +SubClassOf(obo:CL_0000964 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002634)) # Class: obo:CL_0000965 (Bm3 B cell) @@ -14017,7 +15711,11 @@ AnnotationAssertion(rdfs:comment obo:CL_0000965 "Bm3 B cells are also reportedly AnnotationAssertion(rdfs:label obo:CL_0000965 "Bm3 B cell") EquivalentClasses(obo:CL_0000965 ObjectIntersectionOf(obo:CL_0000844 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0071738) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000003516) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0016446))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000965 obo:CL_0000844) +SubClassOf(obo:CL_0000965 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0071738)) +SubClassOf(obo:CL_0000965 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408)) +SubClassOf(obo:CL_0000965 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000003516)) SubClassOf(obo:CL_0000965 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000964)) +SubClassOf(obo:CL_0000965 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0016446)) # Class: obo:CL_0000966 (Bm4 B cell) @@ -14030,7 +15728,11 @@ AnnotationAssertion(rdfs:comment obo:CL_0000966 "Bm4 B cells are also reportedly AnnotationAssertion(rdfs:label obo:CL_0000966 "Bm4 B cell") EquivalentClasses(obo:CL_0000966 ObjectIntersectionOf(obo:CL_0000844 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0071738) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000003516) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0016446))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000966 obo:CL_0000844) +SubClassOf(obo:CL_0000966 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0071738)) +SubClassOf(obo:CL_0000966 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000003516)) +SubClassOf(obo:CL_0000966 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408)) SubClassOf(obo:CL_0000966 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000963)) +SubClassOf(obo:CL_0000966 ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0016446)) # Class: obo:CL_0000967 (Bm5 B cell) @@ -14041,8 +15743,10 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000967 "Bm5 B-lymphocyte") AnnotationAssertion(rdfs:comment obo:CL_0000967 "Bm5 B cells are also reportedly CD10-positive, CD23-negative, CD38-negative, CD39-positive, CD44-positive, CD71-positive, and CD77-negative.") AnnotationAssertion(rdfs:label obo:CL_0000967 "Bm5 B cell") EquivalentClasses(obo:CL_0000967 ObjectIntersectionOf(obo:CL_0000787 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0071738) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0002314) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0016446))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000967 obo:CL_0000787) +SubClassOf(obo:CL_0000967 obo:CL_0001053) SubClassOf(obo:CL_0000967 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000966)) +SubClassOf(obo:CL_0000967 ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0002314)) +SubClassOf(obo:CL_0000967 ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0016446)) # Class: obo:CL_0000968 (Be cell) @@ -14055,6 +15759,9 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000968 "effector B-lymphocy AnnotationAssertion(rdfs:label obo:CL_0000968 "Be cell") EquivalentClasses(obo:CL_0000968 ObjectIntersectionOf(obo:CL_0000785 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001289) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001816) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0043370))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000968 obo:CL_0000785) +SubClassOf(obo:CL_0000968 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001289)) +SubClassOf(obo:CL_0000968 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001816)) +SubClassOf(obo:CL_0000968 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0043370)) # Class: obo:CL_0000969 (regulatory B cell) @@ -14069,6 +15776,10 @@ AnnotationAssertion(rdfs:comment obo:CL_0000969 "Regulatory B cells reportedly r AnnotationAssertion(rdfs:label obo:CL_0000969 "regulatory B cell") EquivalentClasses(obo:CL_0000969 ObjectIntersectionOf(obo:CL_0000785 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001289) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002028) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032613) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050777))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000969 obo:CL_0000785) +SubClassOf(obo:CL_0000969 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001289)) +SubClassOf(obo:CL_0000969 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002028)) +SubClassOf(obo:CL_0000969 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032613)) +SubClassOf(obo:CL_0000969 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050777)) # Class: obo:CL_0000970 (unswitched memory B cell) @@ -14085,6 +15796,12 @@ AnnotationAssertion(rdfs:comment obo:CL_0000970 "This cell type is compatible wi AnnotationAssertion(rdfs:label obo:CL_0000970 "unswitched memory B cell") EquivalentClasses(obo:CL_0000970 ObjectIntersectionOf(obo:CL_0000787 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0071735) ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0071742) ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0071745) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001935) ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071738) ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071753) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001963))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000970 obo:CL_0000787) +SubClassOf(obo:CL_0000970 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0071735)) +SubClassOf(obo:CL_0000970 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0071742)) +SubClassOf(obo:CL_0000970 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0071745)) +SubClassOf(obo:CL_0000970 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071738)) +SubClassOf(obo:CL_0000970 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071753)) +SubClassOf(obo:CL_0000970 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001963)) SubClassOf(obo:CL_0000970 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000980)) # Class: obo:CL_0000971 (IgM memory B cell) @@ -14100,7 +15817,8 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000971 "memory IgM B-lympho AnnotationAssertion(rdfs:comment obo:CL_0000971 "IgM memory B cells are also reportedly CD1c-positive, CD95-positive, CD80-positive, CD84-positive, CD86-positive, CD150-negative, CD229-positive, CD289-positive, and CD290-positive. Transcription factors: Notch2-positive, PAX5-positive, SpiB-positive, Ets1-positive, and OBF1-positive.") AnnotationAssertion(rdfs:label obo:CL_0000971 "IgM memory B cell") EquivalentClasses(obo:CL_0000971 ObjectIntersectionOf(obo:CL_0000787 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0071738) ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071753))) -SubClassOf(obo:CL_0000971 obo:CL_0000787) +SubClassOf(obo:CL_0000971 obo:CL_0001053) +SubClassOf(obo:CL_0000971 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071753)) # Class: obo:CL_0000972 (class switched memory B cell) @@ -14115,7 +15833,10 @@ AnnotationAssertion(rdfs:comment obo:CL_0000972 "Per DSD: Class switched memory AnnotationAssertion(rdfs:label obo:CL_0000972 "class switched memory B cell") EquivalentClasses(obo:CL_0000972 ObjectIntersectionOf(obo:CL_0000787 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0071753) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001963) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0045190))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000972 obo:CL_0000787) +SubClassOf(obo:CL_0000972 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0071753)) +SubClassOf(obo:CL_0000972 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001963)) SubClassOf(obo:CL_0000972 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000970)) +SubClassOf(obo:CL_0000972 ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0045190)) # Class: obo:CL_0000973 (IgA memory B cell) @@ -14131,6 +15852,7 @@ AnnotationAssertion(rdfs:comment obo:CL_0000973 "IgA memory B cell are also repo AnnotationAssertion(rdfs:label obo:CL_0000973 "IgA memory B cell") EquivalentClasses(obo:CL_0000973 ObjectIntersectionOf(obo:CL_0000972 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071745))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000973 obo:CL_0000972) +SubClassOf(obo:CL_0000973 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071745)) # Class: obo:CL_0000974 (long lived plasma cell) @@ -14138,7 +15860,11 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:msz") Annotation(oboInOwl AnnotationAssertion(rdfs:label obo:CL_0000974 "long lived plasma cell") EquivalentClasses(obo:CL_0000974 ObjectIntersectionOf(obo:CL_0000786 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0019814) ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0042613) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001408) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001208) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001935) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001002))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000974 obo:CL_0000786) +SubClassOf(obo:CL_0000974 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001408)) SubClassOf(obo:CL_0000974 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000975)) +SubClassOf(obo:CL_0000974 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001208)) +SubClassOf(obo:CL_0000974 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001935)) +SubClassOf(obo:CL_0000974 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001002)) # Class: obo:CL_0000975 (short lived plasma cell) @@ -14146,7 +15872,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:msz") Annotation(oboInOwl AnnotationAssertion(rdfs:label obo:CL_0000975 "short lived plasma cell") EquivalentClasses(obo:CL_0000975 ObjectIntersectionOf(obo:CL_0000786 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001604))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000975 obo:CL_0000786) -SubClassOf(obo:CL_0000975 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000980)) +SubClassOf(obo:CL_0000975 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001604)) # Class: obo:CL_0000976 (IgA short lived plasma cell) @@ -14154,6 +15880,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:msz") Annotation(oboInOwl AnnotationAssertion(rdfs:label obo:CL_0000976 "IgA short lived plasma cell") EquivalentClasses(obo:CL_0000976 ObjectIntersectionOf(obo:CL_0000975 ObjectSomeValuesFrom(obo:RO_0003000 obo:GO_0071746))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000976 obo:CL_0000975) +SubClassOf(obo:CL_0000976 ObjectSomeValuesFrom(obo:RO_0003000 obo:GO_0071746)) # Class: obo:CL_0000977 (IgG short lived plasma cell) @@ -14161,6 +15888,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:msz") Annotation(oboInOwl AnnotationAssertion(rdfs:label obo:CL_0000977 "IgG short lived plasma cell") EquivalentClasses(obo:CL_0000977 ObjectIntersectionOf(obo:CL_0000975 ObjectSomeValuesFrom(obo:RO_0003000 obo:GO_0071736))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000977 obo:CL_0000975) +SubClassOf(obo:CL_0000977 ObjectSomeValuesFrom(obo:RO_0003000 obo:GO_0071736)) # Class: obo:CL_0000978 (IgM short lived plasma cell) @@ -14168,6 +15896,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:msz") Annotation(oboInOwl AnnotationAssertion(rdfs:label obo:CL_0000978 "IgM short lived plasma cell") EquivalentClasses(obo:CL_0000978 ObjectIntersectionOf(obo:CL_0000975 ObjectSomeValuesFrom(obo:RO_0003000 obo:GO_0071754))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000978 obo:CL_0000975) +SubClassOf(obo:CL_0000978 ObjectSomeValuesFrom(obo:RO_0003000 obo:GO_0071754)) # Class: obo:CL_0000979 (IgG memory B cell) @@ -14183,6 +15912,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000979 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000979 "IgG memory B cell") EquivalentClasses(obo:CL_0000979 ObjectIntersectionOf(obo:CL_0000972 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071735))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000979 obo:CL_0000972) +SubClassOf(obo:CL_0000979 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071735)) # Class: obo:CL_0000980 (plasmablast) @@ -14197,7 +15927,12 @@ AnnotationAssertion(rdfs:comment obo:CL_0000980 "This cell type is compatible wi AnnotationAssertion(rdfs:label obo:CL_0000980 "plasmablast") EquivalentClasses(obo:CL_0000980 ObjectIntersectionOf(obo:CL_0000785 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001935) ObjectSomeValuesFrom(obo:RO_0003000 obo:GO_0042571) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001408) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001963))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000980 obo:CL_0000785) +SubClassOf(obo:CL_0000980 obo:CL_0000946) +SubClassOf(obo:CL_0000980 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289)) +SubClassOf(obo:CL_0000980 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001935)) SubClassOf(obo:CL_0000980 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000785)) +SubClassOf(obo:CL_0000980 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001408)) +SubClassOf(obo:CL_0000980 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001963)) # Class: obo:CL_0000981 (double negative memory B cell) @@ -14211,7 +15946,8 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000981 "double negative mem AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000981 "double negative memory B-lymphocyte") AnnotationAssertion(rdfs:label obo:CL_0000981 "double negative memory B cell") EquivalentClasses(obo:CL_0000981 ObjectIntersectionOf(obo:CL_0000787 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0071738) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001963))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000981 obo:CL_0000787) +SubClassOf(obo:CL_0000981 obo:CL_0001053) +SubClassOf(obo:CL_0000981 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001963)) # Class: obo:CL_0000982 (IgG plasmablast) @@ -14220,6 +15956,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000982 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000982 "IgG plasmablast") EquivalentClasses(obo:CL_0000982 ObjectIntersectionOf(obo:CL_0000980 ObjectSomeValuesFrom(obo:RO_0003000 obo:GO_0071736))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000982 obo:CL_0000980) +SubClassOf(obo:CL_0000982 ObjectSomeValuesFrom(obo:RO_0003000 obo:GO_0071736)) # Class: obo:CL_0000983 (IgM plasmablast) @@ -14227,6 +15964,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:msz") Annotation(oboInOwl AnnotationAssertion(rdfs:label obo:CL_0000983 "IgM plasmablast") EquivalentClasses(obo:CL_0000983 ObjectIntersectionOf(obo:CL_0000980 ObjectSomeValuesFrom(obo:RO_0003000 obo:GO_0071754))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000983 obo:CL_0000980) +SubClassOf(obo:CL_0000983 ObjectSomeValuesFrom(obo:RO_0003000 obo:GO_0071754)) # Class: obo:CL_0000984 (IgA plasmablast) @@ -14235,6 +15973,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000984 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000984 "IgA plasmablast") EquivalentClasses(obo:CL_0000984 ObjectIntersectionOf(obo:CL_0000980 ObjectSomeValuesFrom(obo:RO_0003000 obo:GO_0071746))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000984 obo:CL_0000980) +SubClassOf(obo:CL_0000984 ObjectSomeValuesFrom(obo:RO_0003000 obo:GO_0071746)) # Class: obo:CL_0000985 (IgG plasma cell) @@ -14243,6 +15982,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000985 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000985 "IgG plasma cell") EquivalentClasses(obo:CL_0000985 ObjectIntersectionOf(obo:CL_0000974 ObjectSomeValuesFrom(obo:RO_0003000 obo:GO_0071736))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000985 obo:CL_0000974) +SubClassOf(obo:CL_0000985 ObjectSomeValuesFrom(obo:RO_0003000 obo:GO_0071736)) # Class: obo:CL_0000986 (IgM plasma cell) @@ -14251,6 +15991,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000986 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000986 "IgM plasma cell") EquivalentClasses(obo:CL_0000986 ObjectIntersectionOf(obo:CL_0000974 ObjectSomeValuesFrom(obo:RO_0003000 obo:GO_0071754))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000986 obo:CL_0000974) +SubClassOf(obo:CL_0000986 ObjectSomeValuesFrom(obo:RO_0003000 obo:GO_0071754)) # Class: obo:CL_0000987 (IgA plasma cell) @@ -14259,6 +16000,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0000987 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0000987 "IgA plasma cell") EquivalentClasses(obo:CL_0000987 ObjectIntersectionOf(obo:CL_0000974 ObjectSomeValuesFrom(obo:RO_0003000 obo:GO_0071746))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000987 obo:CL_0000974) +SubClassOf(obo:CL_0000987 ObjectSomeValuesFrom(obo:RO_0003000 obo:GO_0071746)) # Class: obo:CL_0000988 (hematopoietic cell) @@ -14267,6 +16009,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000988 "BTO:0000574") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000988 "CALOHA:TS-2017") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000988 "FMA:70366") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000988 "FMA:83598") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0000988 "ZFA:0005830") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000988 "haematopoietic cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000988 "haemopoietic cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000988 "hemopoietic cell") @@ -14281,6 +16024,10 @@ AnnotationAssertion(rdfs:comment obo:CL_0000989 "Originally described in the den AnnotationAssertion(rdfs:label obo:CL_0000989 "CD11c-low plasmacytoid dendritic cell") EquivalentClasses(obo:CL_0000989 ObjectIntersectionOf(obo:CL_0000784 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001014) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002978) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001013))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000989 obo:CL_0000784) +SubClassOf(obo:CL_0000989 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012)) +SubClassOf(obo:CL_0000989 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001014)) +SubClassOf(obo:CL_0000989 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002978)) +SubClassOf(obo:CL_0000989 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001013)) # Class: obo:CL_0000990 (conventional dendritic cell) @@ -14300,6 +16047,7 @@ AnnotationAssertion(rdfs:comment obo:CL_0000990 "Originally described in the den AnnotationAssertion(rdfs:label obo:CL_0000990 "conventional dendritic cell") EquivalentClasses(obo:CL_0000990 ObjectIntersectionOf(obo:CL_0000451 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001013))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000990 obo:CL_0000451) +SubClassOf(obo:CL_0000990 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001013)) # Class: obo:CL_0000991 (CD11c-negative plasmacytoid dendritic cell) @@ -14309,6 +16057,10 @@ AnnotationAssertion(rdfs:comment obo:CL_0000991 "Originally described in the den AnnotationAssertion(rdfs:label obo:CL_0000991 "CD11c-negative plasmacytoid dendritic cell") EquivalentClasses(obo:CL_0000991 ObjectIntersectionOf(obo:CL_0000784 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001014) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001292) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001398) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001865) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001816) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032606))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000991 obo:CL_0000784) +SubClassOf(obo:CL_0000991 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001014)) +SubClassOf(obo:CL_0000991 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001292)) +SubClassOf(obo:CL_0000991 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001398)) +SubClassOf(obo:CL_0000991 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001865)) # Class: obo:CL_0000992 (immature CD11c-low plasmacytoid dendritic cell) @@ -14316,8 +16068,11 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:amm") Annotation(oboInOwl AnnotationAssertion(rdfs:comment obo:CL_0000992 "Originally described in the dendritic cell ontology (DC_CL:0000006)(PMID:19243617).") AnnotationAssertion(rdfs:label obo:CL_0000992 "immature CD11c-low plasmacytoid dendritic cell") EquivalentClasses(obo:CL_0000992 ObjectIntersectionOf(obo:CL_0000989 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001412) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001438))) +SubClassOf(obo:CL_0000992 obo:CL_0000766) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000992 obo:CL_0000989) SubClassOf(obo:CL_0000992 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0001029)) +SubClassOf(obo:CL_0000992 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001412)) +SubClassOf(obo:CL_0000992 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001438)) # Class: obo:CL_0000993 (mature CD11c-low plasmacytoid dendritic cell) @@ -14325,8 +16080,13 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:amm") Annotation(oboInOwl AnnotationAssertion(rdfs:comment obo:CL_0000993 "Originally described in the dendritic cell ontology (DC_CL:0000007)(PMID:19243617).") AnnotationAssertion(rdfs:label obo:CL_0000993 "mature CD11c-low plasmacytoid dendritic cell") EquivalentClasses(obo:CL_0000993 ObjectIntersectionOf(obo:CL_0000989 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001310) ObjectSomeValuesFrom(obo:RO_0015015 obo:GO_0042613) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001412) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001438))) +SubClassOf(obo:CL_0000993 obo:CL_0000766) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000993 obo:CL_0000989) +SubClassOf(obo:CL_0000993 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001310)) SubClassOf(obo:CL_0000993 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000992)) +SubClassOf(obo:CL_0000993 ObjectSomeValuesFrom(obo:RO_0015015 obo:GO_0042613)) +SubClassOf(obo:CL_0000993 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001412)) +SubClassOf(obo:CL_0000993 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001438)) # Class: obo:CL_0000994 (immature CD11c-negative plasmacytoid dendritic cell) @@ -14335,7 +16095,10 @@ AnnotationAssertion(rdfs:comment obo:CL_0000994 "Originally described in the den AnnotationAssertion(rdfs:label obo:CL_0000994 "immature CD11c-negative plasmacytoid dendritic cell") EquivalentClasses(obo:CL_0000994 ObjectIntersectionOf(obo:CL_0000991 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001438) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0019882) ObjectSomeValuesFrom(obo:RO_0015016 obo:GO_0042613) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001412))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000994 obo:CL_0000991) +SubClassOf(obo:CL_0000994 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001438)) SubClassOf(obo:CL_0000994 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000995)) +SubClassOf(obo:CL_0000994 ObjectSomeValuesFrom(obo:RO_0015016 obo:GO_0042613)) +SubClassOf(obo:CL_0000994 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001412)) # Class: obo:CL_0000995 (CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor) @@ -14352,7 +16115,11 @@ AnnotationAssertion(rdfs:comment obo:CL_0000996 "Originally described in the den AnnotationAssertion(rdfs:label obo:CL_0000996 "mature CD11c-negative plasmacytoid dendritic cell") EquivalentClasses(obo:CL_0000996 ObjectIntersectionOf(obo:CL_0000991 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001310) ObjectSomeValuesFrom(obo:RO_0015015 obo:GO_0042613) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001412) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001438))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000996 obo:CL_0000991) +SubClassOf(obo:CL_0000996 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001310)) SubClassOf(obo:CL_0000996 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000994)) +SubClassOf(obo:CL_0000996 ObjectSomeValuesFrom(obo:RO_0015015 obo:GO_0042613)) +SubClassOf(obo:CL_0000996 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001412)) +SubClassOf(obo:CL_0000996 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001438)) # Class: obo:CL_0000997 (immature CD8_alpha-negative CD11b-positive dendritic cell) @@ -14360,8 +16127,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:amm") Annotation(oboInOwl AnnotationAssertion(rdfs:comment obo:CL_0000997 "Originally described in the dendritic cell ontology (DC_CL:0000010)(PMID:19243617).") AnnotationAssertion(rdfs:label obo:CL_0000997 "immature CD8_alpha-negative CD11b-positive dendritic cell") EquivalentClasses(obo:CL_0000997 ObjectIntersectionOf(obo:CL_0000999 ObjectSomeValuesFrom(obo:RO_0015016 obo:GO_0042613) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001412) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001438))) +SubClassOf(obo:CL_0000997 obo:CL_0000840) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000997 obo:CL_0000999) -SubClassOf(obo:CL_0000997 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002010)) # Class: obo:CL_0000998 (CD8_alpha-negative CD11b-negative dendritic cell) @@ -14371,8 +16138,14 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000998 "triple negative den AnnotationAssertion(rdfs:comment obo:CL_0000998 "These markers are associated with mouse cells. Originally described in the dendritic cell ontology (DC_CL:0000011)(PMID:19243617).") AnnotationAssertion(rdfs:label obo:CL_0000998 "CD8_alpha-negative CD11b-negative dendritic cell") EquivalentClasses(obo:CL_0000998 ObjectIntersectionOf(obo:CL_0000990 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001026) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002474))) +SubClassOf(obo:CL_0000998 obo:CL_0000766) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000998 obo:CL_0000990) +SubClassOf(obo:CL_0000998 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004)) +SubClassOf(obo:CL_0000998 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012)) +SubClassOf(obo:CL_0000998 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084)) +SubClassOf(obo:CL_0000998 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001026)) SubClassOf(obo:CL_0000998 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002010)) +SubClassOf(obo:CL_0000998 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002474)) # Class: obo:CL_0000999 (CD4-positive CD11b-positive dendritic cell) @@ -14381,8 +16154,13 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000999 "DC.4+") AnnotationAssertion(rdfs:comment obo:CL_0000999 "Defined as having a disposition to secreting anti-inflammatory cytokines. These markers are associated with mouse cells. Originally described in the dendritic cell ontology (DC_CL:0000012)(PMID:19243617).") AnnotationAssertion(rdfs:label obo:CL_0000999 "CD4-positive CD11b-positive dendritic cell") EquivalentClasses(obo:CL_0000999 ObjectIntersectionOf(obo:CL_0000990 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001026) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001004) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001816) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050728))) +SubClassOf(obo:CL_0000999 obo:CL_0000766) SubClassOf(obo:CL_0000999 obo:CL_0002465) +SubClassOf(obo:CL_0000999 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001026)) +SubClassOf(obo:CL_0000999 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084)) +SubClassOf(obo:CL_0000999 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001004)) SubClassOf(obo:CL_0000999 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002010)) +SubClassOf(obo:CL_0000999 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050728)) # Class: obo:CL_0001000 (CD8_alpha-positive CD11b-negative dendritic cell) @@ -14391,8 +16169,15 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0001000 "DC.8+") AnnotationAssertion(rdfs:comment obo:CL_0001000 "Cells are defined as having a disposition to secreting inflammatory cytokines. Originally described in the dendritic cell ontology (DC_CL:0000013)(PMID:19243617).") AnnotationAssertion(rdfs:label obo:CL_0001000 "CD8_alpha-positive CD11b-negative dendritic cell") EquivalentClasses(obo:CL_0001000 ObjectIntersectionOf(obo:CL_0000990 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001026) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001084) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001816) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0042590) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050729))) +SubClassOf(obo:CL_0001000 obo:CL_0000766) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0001000 obo:CL_0000990) +SubClassOf(obo:CL_0001000 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004)) +SubClassOf(obo:CL_0001000 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012)) +SubClassOf(obo:CL_0001000 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001026)) +SubClassOf(obo:CL_0001000 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001084)) SubClassOf(obo:CL_0001000 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002010)) +SubClassOf(obo:CL_0001000 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0042590)) +SubClassOf(obo:CL_0001000 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050729)) # Class: obo:CL_0001001 (immature CD8_alpha-negative CD11b-negative dendritic cell) @@ -14400,8 +16185,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:amm") Annotation(oboInOwl AnnotationAssertion(rdfs:comment obo:CL_0001001 "These markers are associated with mouse cells. Originally described in the dendritic cell ontology (DC_CL:0000014)(PMID:19243617).") AnnotationAssertion(rdfs:label obo:CL_0001001 "immature CD8_alpha-negative CD11b-negative dendritic cell") EquivalentClasses(obo:CL_0001001 ObjectIntersectionOf(obo:CL_0000998 ObjectSomeValuesFrom(obo:RO_0015016 obo:GO_0042613) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001412) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001438))) +SubClassOf(obo:CL_0001001 obo:CL_0000840) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0001001 obo:CL_0000998) -SubClassOf(obo:CL_0001001 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002010)) # Class: obo:CL_0001002 (mature CD8_alpha-negative CD11b-negative dendritic cell) @@ -14409,6 +16194,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:amm") Annotation(oboInOwl AnnotationAssertion(rdfs:comment obo:CL_0001002 "These markers are associated with mouse cells. Defined as having a disposition to secretion of anti-inflammatory cytokines. Originally described in the dendritic cell ontology (DC_CL:0000015)(PMID:19243617).") AnnotationAssertion(rdfs:label obo:CL_0001002 "mature CD8_alpha-negative CD11b-negative dendritic cell") EquivalentClasses(obo:CL_0001002 ObjectIntersectionOf(obo:CL_0000998 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001310) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001816) ObjectSomeValuesFrom(obo:RO_0015015 obo:GO_0042613) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001412) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001438))) +SubClassOf(obo:CL_0001002 obo:CL_0000841) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0001002 obo:CL_0000998) SubClassOf(obo:CL_0001002 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0001001)) @@ -14418,6 +16204,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:amm") Annotation(oboInOwl AnnotationAssertion(rdfs:comment obo:CL_0001003 "Originally described in the dendritic cell ontology (DC_CL:0000016)(PMID:19243617).") AnnotationAssertion(rdfs:label obo:CL_0001003 "mature CD8_alpha-negative CD11b-positive dendritic cell") EquivalentClasses(obo:CL_0001003 ObjectIntersectionOf(obo:CL_0000999 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001310) ObjectSomeValuesFrom(obo:RO_0015015 obo:GO_0042613) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001412) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001438))) +SubClassOf(obo:CL_0001003 obo:CL_0000841) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0001003 obo:CL_0000999) SubClassOf(obo:CL_0001003 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000997)) @@ -14427,8 +16214,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:amm") Annotation(oboInOwl AnnotationAssertion(rdfs:comment obo:CL_0001004 "Originally described in the dendritic cell ontology (DC_CL:0000017)(PMID:19243617).") AnnotationAssertion(rdfs:label obo:CL_0001004 "immature CD8_alpha-positive CD11b-negative dendritic cell") EquivalentClasses(obo:CL_0001004 ObjectIntersectionOf(obo:CL_0001000 ObjectSomeValuesFrom(obo:RO_0015016 obo:GO_0042613) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001412) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001438))) +SubClassOf(obo:CL_0001004 obo:CL_0000840) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0001004 obo:CL_0001000) -SubClassOf(obo:CL_0001004 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002010)) # Class: obo:CL_0001005 (mature CD8_alpha-positive CD11b-negative dendritic cell) @@ -14436,6 +16223,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:amm") Annotation(oboInOwl AnnotationAssertion(rdfs:comment obo:CL_0001005 "Originally described in the dendritic cell ontology (DC_CL:0000018)(PMID:19243617).") AnnotationAssertion(rdfs:label obo:CL_0001005 "mature CD8_alpha-positive CD11b-negative dendritic cell") EquivalentClasses(obo:CL_0001005 ObjectIntersectionOf(obo:CL_0001000 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001310) ObjectSomeValuesFrom(obo:RO_0015015 obo:GO_0042613) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001412) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001438))) +SubClassOf(obo:CL_0001005 obo:CL_0000841) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0001005 obo:CL_0001000) SubClassOf(obo:CL_0001005 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0001004)) @@ -14448,7 +16236,10 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0001006 core:human_reference_atlas) AnnotationAssertion(rdfs:comment obo:CL_0001006 "Originally described in the dendritic cell ontology (DC_CL:0000019)(PMID:19243617). These cells are also CD281-positive (TLR1), CD282-positive (TLR2), CD283-positive (TLR3), CD284-positive (TLR4), CD285-positive (TLR5), CD288-positive (TLR8), and CD289-positive (TLR9).") AnnotationAssertion(rdfs:label obo:CL_0001006 "dermal dendritic cell") EquivalentClasses(obo:CL_0001006 ObjectIntersectionOf(obo:CL_0000990 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002067) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001012) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001026) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001084))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0001006 obo:CL_0000990) +SubClassOf(obo:CL_0001006 obo:CL_0002465) +SubClassOf(obo:CL_0001006 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002067)) +SubClassOf(obo:CL_0001006 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001026)) +SubClassOf(obo:CL_0001006 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001084)) # Class: obo:CL_0001007 (interstitial dendritic cell) @@ -14456,7 +16247,11 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:amm") Annotation(oboInOwl AnnotationAssertion(rdfs:comment obo:CL_0001007 "Originally described in the dendritic cell ontology (DC_CL:0000020)(PMID:19243617). These cells are also CD281-positive (TLR1), CD282-positive (TLR2), CD283-positive (TLR3), CD284-positive (TLR4), CD286-positive (TLR6), CD288-positive (TLR8), and CD290-positive (TLR10).") AnnotationAssertion(rdfs:label obo:CL_0001007 "interstitial dendritic cell") EquivalentClasses(obo:CL_0001007 ObjectIntersectionOf(obo:CL_0000990 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001012) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001300) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001905) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002025) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002972))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0001007 obo:CL_0000990) +SubClassOf(obo:CL_0001007 obo:CL_0002465) +SubClassOf(obo:CL_0001007 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001300)) +SubClassOf(obo:CL_0001007 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001905)) +SubClassOf(obo:CL_0001007 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002025)) +SubClassOf(obo:CL_0001007 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002972)) # Class: obo:CL_0001008 (Kit and Sca1-positive hematopoietic stem cell) @@ -14467,6 +16262,14 @@ AnnotationAssertion(rdfs:comment obo:CL_0001008 "Cell markers are associated wit AnnotationAssertion(rdfs:label obo:CL_0001008 "Kit and Sca1-positive hematopoietic stem cell") EquivalentClasses(obo:CL_0001008 ObjectIntersectionOf(obo:CL_0000037 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001014) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001308) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001839) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001869) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001896) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002977) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002981) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001833) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002065) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002979))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0001008 obo:CL_0000037) +SubClassOf(obo:CL_0001008 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001014)) +SubClassOf(obo:CL_0001008 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001308)) +SubClassOf(obo:CL_0001008 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001869)) +SubClassOf(obo:CL_0001008 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001896)) +SubClassOf(obo:CL_0001008 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002977)) +SubClassOf(obo:CL_0001008 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001833)) +SubClassOf(obo:CL_0001008 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002065)) +SubClassOf(obo:CL_0001008 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002979)) DisjointClasses(obo:CL_0001008 obo:CL_0001024) # Class: obo:CL_0001009 (immature dermal dendritic cell) @@ -14475,8 +16278,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:amm") Annotation(oboInOwl AnnotationAssertion(rdfs:comment obo:CL_0001009 "Originally described in the dendritic cell ontology (DC_CL:0000022)(PMID:19243617).") AnnotationAssertion(rdfs:label obo:CL_0001009 "immature dermal dendritic cell") EquivalentClasses(obo:CL_0001009 ObjectIntersectionOf(obo:CL_0001006 ObjectSomeValuesFrom(obo:RO_0015016 obo:GO_0042613) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001412) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001438))) +SubClassOf(obo:CL_0001009 obo:CL_0000840) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0001009 obo:CL_0001006) -SubClassOf(obo:CL_0001009 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0001029)) # Class: obo:CL_0001010 (mature dermal dendritic cell) @@ -14484,6 +16287,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:amm") Annotation(oboInOwl AnnotationAssertion(rdfs:comment obo:CL_0001010 "Originally described in the dendritic cell ontology (DC_CL:0000023)(PMID:19243617).") AnnotationAssertion(rdfs:label obo:CL_0001010 "mature dermal dendritic cell") EquivalentClasses(obo:CL_0001010 ObjectIntersectionOf(obo:CL_0001006 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001310) ObjectSomeValuesFrom(obo:RO_0015015 obo:GO_0042613) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001412) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001438))) +SubClassOf(obo:CL_0001010 obo:CL_0000841) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0001010 obo:CL_0001006) SubClassOf(obo:CL_0001010 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0001009)) @@ -14493,8 +16297,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:amm") Annotation(oboInOwl AnnotationAssertion(rdfs:comment obo:CL_0001011 "Originally described in the dendritic cell ontology (DC_CL:0000024)(PMID:19243617).") AnnotationAssertion(rdfs:label obo:CL_0001011 "immature interstitial dendritic cell") EquivalentClasses(obo:CL_0001011 ObjectIntersectionOf(obo:CL_0001007 ObjectSomeValuesFrom(obo:RO_0015016 obo:GO_0042613) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001412) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001438))) +SubClassOf(obo:CL_0001011 obo:CL_0000840) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0001011 obo:CL_0001007) -SubClassOf(obo:CL_0001011 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0001012)) # Class: obo:CL_0001012 (CD7-negative lymphoid progenitor OR granulocyte monocyte progenitor) @@ -14509,6 +16313,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:amm") Annotation(oboInOwl AnnotationAssertion(rdfs:comment obo:CL_0001013 "Originally described in the dendritic cell ontology (DC_CL:0000025)(PMID:19243617).") AnnotationAssertion(rdfs:label obo:CL_0001013 "mature interstitial dendritic cell") EquivalentClasses(obo:CL_0001013 ObjectIntersectionOf(obo:CL_0001007 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001310) ObjectSomeValuesFrom(obo:RO_0015015 obo:GO_0042613) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001412) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001438))) +SubClassOf(obo:CL_0001013 obo:CL_0000841) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0001013 obo:CL_0001007) SubClassOf(obo:CL_0001013 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0001011)) @@ -14520,6 +16325,8 @@ AnnotationAssertion(rdfs:comment obo:CL_0001014 "These markers are associated wi AnnotationAssertion(rdfs:label obo:CL_0001014 "CD1a-positive Langerhans cell") EquivalentClasses(obo:CL_0001014 ObjectIntersectionOf(obo:CL_0000453 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001447) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002025))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0001014 obo:CL_0000453) +SubClassOf(obo:CL_0001014 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001447)) +SubClassOf(obo:CL_0001014 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002025)) # Class: obo:CL_0001015 (CD8_alpha-low Langerhans cell) @@ -14528,6 +16335,8 @@ AnnotationAssertion(rdfs:comment obo:CL_0001015 "These markers are associated wi AnnotationAssertion(rdfs:label obo:CL_0001015 "CD8_alpha-low Langerhans cell") EquivalentClasses(obo:CL_0001015 ObjectIntersectionOf(obo:CL_0000453 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001026) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001084))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0001015 obo:CL_0000453) +SubClassOf(obo:CL_0001015 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001026)) +SubClassOf(obo:CL_0001015 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001084)) # Class: obo:CL_0001016 (immature CD1a-positive Langerhans cell) @@ -14535,6 +16344,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:amm") Annotation(oboInOwl AnnotationAssertion(rdfs:comment obo:CL_0001016 "Originally described in the dendritic cell ontology (DC_CL:0000028)(PMID:19243617).") AnnotationAssertion(rdfs:label obo:CL_0001016 "immature CD1a-positive Langerhans cell") EquivalentClasses(obo:CL_0001016 ObjectIntersectionOf(obo:CL_0001014 ObjectSomeValuesFrom(obo:RO_0015016 obo:GO_0042613) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001412) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001438))) +SubClassOf(obo:CL_0001016 obo:CL_0000840) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0001016 obo:CL_0001014) # Class: obo:CL_0001017 (mature CD1a-positive Langerhans cell) @@ -14543,6 +16353,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:amm") Annotation(oboInOwl AnnotationAssertion(rdfs:comment obo:CL_0001017 "Originally described in the dendritic cell ontology (DC_CL:0000029)(PMID:19243617). When activated, these cells produce IL-6, IL-8, and IL-15.") AnnotationAssertion(rdfs:label obo:CL_0001017 "mature CD1a-positive Langerhans cell") EquivalentClasses(obo:CL_0001017 ObjectIntersectionOf(obo:CL_0001014 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001310) ObjectSomeValuesFrom(obo:RO_0015015 obo:GO_0042613) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001412) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001438))) +SubClassOf(obo:CL_0001017 obo:CL_0000841) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0001017 obo:CL_0001014) SubClassOf(obo:CL_0001017 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0001016)) @@ -14552,8 +16363,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:amm") Annotation(oboInOwl AnnotationAssertion(rdfs:comment obo:CL_0001018 "These markers are associated with mouse cells. Originally described in the dendritic cell ontology (DC_CL:0000030)(PMID:19243617).") AnnotationAssertion(rdfs:label obo:CL_0001018 "immature CD8_alpha-low Langerhans cell") EquivalentClasses(obo:CL_0001018 ObjectIntersectionOf(obo:CL_0001015 ObjectSomeValuesFrom(obo:RO_0015016 obo:GO_0042613) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001412) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001438))) +SubClassOf(obo:CL_0001018 obo:CL_0000840) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0001018 obo:CL_0001015) -SubClassOf(obo:CL_0001018 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0001019)) # Class: obo:CL_0001019 (CD115-positive monocyte OR common dendritic progenitor) @@ -14568,6 +16379,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:amm") Annotation(oboInOwl AnnotationAssertion(rdfs:comment obo:CL_0001020 "These markers are associated with mouse cells. Originally described in the dendritic cell ontology (DC_CL:0000031)(PMID:19243617).") AnnotationAssertion(rdfs:label obo:CL_0001020 "mature CD8_alpha-low Langerhans cell") EquivalentClasses(obo:CL_0001020 ObjectIntersectionOf(obo:CL_0001015 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001310) ObjectSomeValuesFrom(obo:RO_0015015 obo:GO_0042613) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001412) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001438))) +SubClassOf(obo:CL_0001020 obo:CL_0000841) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0001020 obo:CL_0001015) SubClassOf(obo:CL_0001020 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0001018)) @@ -14581,6 +16393,11 @@ AnnotationAssertion(rdfs:comment obo:CL_0001021 "These markers are associated wi AnnotationAssertion(rdfs:label obo:CL_0001021 "CD34-positive, CD38-positive common lymphoid progenitor") EquivalentClasses(obo:CL_0001021 ObjectIntersectionOf(obo:CL_0000051 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001015) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001898))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0001021 obo:CL_0000051) +SubClassOf(obo:CL_0001021 obo:CL_0000995) +SubClassOf(obo:CL_0001021 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003)) +SubClassOf(obo:CL_0001021 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001015)) +SubClassOf(obo:CL_0001021 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408)) +SubClassOf(obo:CL_0001021 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001898)) SubClassOf(obo:CL_0001021 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002043)) DisjointClasses(obo:CL_0001021 obo:CL_0001025) @@ -14591,6 +16408,10 @@ AnnotationAssertion(rdfs:comment obo:CL_0001022 "These markers are associated wi AnnotationAssertion(rdfs:label obo:CL_0001022 "CD115-positive monocyte") EquivalentClasses(obo:CL_0001022 ObjectIntersectionOf(obo:CL_0000576 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001012) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002062))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0001022 obo:CL_0000576) +SubClassOf(obo:CL_0001022 obo:CL_0000839) +SubClassOf(obo:CL_0001022 obo:CL_0001019) +SubClassOf(obo:CL_0001022 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001012)) +SubClassOf(obo:CL_0001022 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002062)) SubClassOf(obo:CL_0001022 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002001)) # Class: obo:CL_0001023 (Kit-positive, CD34-positive common myeloid progenitor) @@ -14600,8 +16421,14 @@ AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0001023 "CD117-positive comm AnnotationAssertion(rdfs:comment obo:CL_0001023 "Markers are associated with mouse cells. Originally described in the dendritic cell ontology (DC_CL:0000034)(PMID:19243617).") AnnotationAssertion(rdfs:label obo:CL_0001023 "Kit-positive, CD34-positive common myeloid progenitor") EquivalentClasses(obo:CL_0001023 ObjectIntersectionOf(obo:CL_0001059 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001869) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002979) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002065) ObjectSomeValuesFrom(obo:RO_0015016 obo:GO_0033001) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001481))) +SubClassOf(obo:CL_0001023 obo:CL_0001030) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0001023 obo:CL_0001059) +SubClassOf(obo:CL_0001023 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001869)) +SubClassOf(obo:CL_0001023 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002979)) +SubClassOf(obo:CL_0001023 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002065)) SubClassOf(obo:CL_0001023 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002035)) +SubClassOf(obo:CL_0001023 ObjectSomeValuesFrom(obo:RO_0015016 obo:GO_0033001)) +SubClassOf(obo:CL_0001023 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001481)) DisjointClasses(obo:CL_0001023 obo:CL_0001026) # Class: obo:CL_0001024 (CD34-positive, CD38-negative hematopoietic stem cell) @@ -14614,6 +16441,14 @@ AnnotationAssertion(rdfs:comment obo:CL_0001024 "Cell markers are associated wit AnnotationAssertion(rdfs:label obo:CL_0001024 "CD34-positive, CD38-negative hematopoietic stem cell") EquivalentClasses(obo:CL_0001024 ObjectIntersectionOf(obo:CL_0000037 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001024) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001408) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001483) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001892) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001945) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001786) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001809) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001843))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0001024 obo:CL_0000037) +SubClassOf(obo:CL_0001024 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001408)) +SubClassOf(obo:CL_0001024 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001483)) +SubClassOf(obo:CL_0001024 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001892)) +SubClassOf(obo:CL_0001024 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001945)) +SubClassOf(obo:CL_0001024 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003)) +SubClassOf(obo:CL_0001024 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001786)) +SubClassOf(obo:CL_0001024 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001809)) +SubClassOf(obo:CL_0001024 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001843)) # Class: obo:CL_0001025 (Kit-positive, Sca1-positive common lymphoid progenitor) @@ -14625,7 +16460,15 @@ AnnotationAssertion(rdfs:comment obo:CL_0001025 "Markers are associated with mou AnnotationAssertion(rdfs:label obo:CL_0001025 "Kit-positive, Sca1-positive common lymphoid progenitor") EquivalentClasses(obo:CL_0001025 ObjectIntersectionOf(obo:CL_0000051 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001014) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001869) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001963) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002001) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002037) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000002065) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000002979))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0001025 obo:CL_0000051) +SubClassOf(obo:CL_0001025 obo:CL_0001030) +SubClassOf(obo:CL_0001025 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001014)) +SubClassOf(obo:CL_0001025 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001869)) +SubClassOf(obo:CL_0001025 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001963)) +SubClassOf(obo:CL_0001025 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002001)) +SubClassOf(obo:CL_0001025 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002037)) SubClassOf(obo:CL_0001025 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000936)) +SubClassOf(obo:CL_0001025 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000002065)) +SubClassOf(obo:CL_0001025 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000002979)) # Class: obo:CL_0001026 (CD34-positive, CD38-positive common myeloid progenitor) @@ -14634,8 +16477,15 @@ AnnotationAssertion(oboInOwl:hasNarrowSynonym obo:CL_0001026 "CD71-positive comm AnnotationAssertion(rdfs:comment obo:CL_0001026 "Markers are associated with human cell type. Originally described in the dendritic cell ontology (DC_CL:0000038)(PMID:19243617).") AnnotationAssertion(rdfs:label obo:CL_0001026 "CD34-positive, CD38-positive common myeloid progenitor") EquivalentClasses(obo:CL_0001026 ObjectIntersectionOf(obo:CL_0001059 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001015) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001836) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001867) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001898) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001865))) +SubClassOf(obo:CL_0001026 obo:CL_0000995) SubClassOf(obo:CL_0001026 obo:CL_0001059) +SubClassOf(obo:CL_0001026 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001015)) +SubClassOf(obo:CL_0001026 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001836)) +SubClassOf(obo:CL_0001026 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001867)) +SubClassOf(obo:CL_0001026 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001898)) +SubClassOf(obo:CL_0001026 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408)) SubClassOf(obo:CL_0001026 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002043)) +SubClassOf(obo:CL_0001026 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001865)) # Class: obo:CL_0001027 (CD7-negative lymphoid progenitor cell) @@ -14645,6 +16495,10 @@ AnnotationAssertion(rdfs:comment obo:CL_0001027 "These markers are associated wi AnnotationAssertion(rdfs:label obo:CL_0001027 "CD7-negative lymphoid progenitor cell") EquivalentClasses(obo:CL_0001027 ObjectIntersectionOf(obo:CL_0000051 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001015) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001836) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0001027 obo:CL_0000051) +SubClassOf(obo:CL_0001027 obo:CL_0001012) +SubClassOf(obo:CL_0001027 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001015)) +SubClassOf(obo:CL_0001027 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001836)) +SubClassOf(obo:CL_0001027 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003)) SubClassOf(obo:CL_0001027 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0001021)) # Class: obo:CL_0001028 (CD7-positive lymphoid progenitor cell) @@ -14655,6 +16509,9 @@ AnnotationAssertion(rdfs:comment obo:CL_0001028 "These markers are associated wi AnnotationAssertion(rdfs:label obo:CL_0001028 "CD7-positive lymphoid progenitor cell") EquivalentClasses(obo:CL_0001028 ObjectIntersectionOf(obo:CL_0000051 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001015) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001836))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0001028 obo:CL_0000051) +SubClassOf(obo:CL_0001028 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001015)) +SubClassOf(obo:CL_0001028 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003)) +SubClassOf(obo:CL_0001028 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001836)) SubClassOf(obo:CL_0001028 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0001027)) # Class: obo:CL_0001029 (common dendritic progenitor) @@ -14667,8 +16524,24 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0001029 cl:cellxgene_subset) AnnotationAssertion(rdfs:comment obo:CL_0001029 "Surface markers are for mouse cells. Originally described in the dendritic cell ontology (DC_CL:0000041) CDP are reportedly CD2-negative, CD3-negative, CD4-negative, CD5-negative, CD8a-negative, CD11c-positive, CD14-negative, CD19-negative, CD20-negative, CD56-negative, B220-negative, Ly6g-negative, MHCII-positive, and Ter119-negative. (PMID:19243617).") AnnotationAssertion(rdfs:label obo:CL_0001029 "common dendritic progenitor") EquivalentClasses(obo:CL_0001029 ObjectIntersectionOf(obo:CL_0002031 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001024) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001083) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001839) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001889) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002978) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002981) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002001) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002062) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000002065))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0001029 obo:CL_0002031) +SubClassOf(obo:CL_0001029 obo:CL_0000763) +SubClassOf(obo:CL_0001029 obo:CL_0001019) +SubClassOf(obo:CL_0001029 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002)) +SubClassOf(obo:CL_0001029 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004)) +SubClassOf(obo:CL_0001029 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012)) +SubClassOf(obo:CL_0001029 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020)) +SubClassOf(obo:CL_0001029 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001024)) +SubClassOf(obo:CL_0001029 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001083)) +SubClassOf(obo:CL_0001029 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084)) +SubClassOf(obo:CL_0001029 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289)) +SubClassOf(obo:CL_0001029 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001839)) +SubClassOf(obo:CL_0001029 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001889)) +SubClassOf(obo:CL_0001029 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002978)) +SubClassOf(obo:CL_0001029 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002981)) +SubClassOf(obo:CL_0001029 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002001)) +SubClassOf(obo:CL_0001029 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002062)) SubClassOf(obo:CL_0001029 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002009)) +SubClassOf(obo:CL_0001029 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000002065)) # Class: obo:CL_0001030 (CD117-positive common myeloid progenitor OR CD217-positive common lymphoid progenitor) @@ -14681,12 +16554,15 @@ SubClassOf(obo:CL_0001030 obo:CL_0001060) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:mah") Annotation(oboInOwl:hasDbXref "doi:10.12688/f1000research.15021.1") Annotation(oboInOwl:hasDbXref "doi:10.3389/fncir.2020.611841") obo:IAO_0000115 obo:CL_0001031 "An excitatory granule cell with a soma located in the granular layer of cerebellar cortex. A mature cerebellar granule cell has short dendrites with a characteristic claw-like appearance and a long axon that ascends to the molecular layer where it bifurcates (except in non-teleost fish, where it does not bifurcate) and extends mediolaterally to form parallel fibers.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0001031 "BTO:0004278") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0001031 "ZFA:0001691") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.3389/fncir.2020.611841") oboInOwl:hasExactSynonym obo:CL_0001031 "granule cell of the cerebellum") AnnotationAssertion(oboInOwl:inSubset obo:CL_0001031 cl:cellxgene_subset) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.3389/fncir.2020.611841") rdfs:comment obo:CL_0001031 "It has been noted in at least some mammalian species that granule cells are the most numerous cell type in the cerebellum and in the brain, with at least 99% of all cerebellar neurons being granule cells.") AnnotationAssertion(rdfs:label obo:CL_0001031 "cerebellar granule cell") EquivalentClasses(obo:CL_0001031 ObjectIntersectionOf(obo:CL_0000120 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002037))) -SubClassOf(obo:CL_0001031 obo:CL_0000679) +SubClassOf(obo:CL_0001031 obo:CL_0000120) +SubClassOf(obo:CL_0001031 obo:CL_2000028) +SubClassOf(obo:CL_0001031 obo:UBERON_0004121) SubClassOf(obo:CL_0001031 ObjectSomeValuesFrom(obo:RO_0002207 obo:CL_0002362)) # Class: obo:CL_0001032 (cortical granule cell) @@ -14694,12 +16570,17 @@ SubClassOf(obo:CL_0001031 ObjectSomeValuesFrom(obo:RO_0002207 obo:CL_0002362)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:mah") obo:IAO_0000115 obo:CL_0001032 "Granule cell that is part of the cerebral cortex.") AnnotationAssertion(rdfs:label obo:CL_0001032 "cortical granule cell") EquivalentClasses(obo:CL_0001032 ObjectIntersectionOf(obo:CL_0000120 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000956))) +SubClassOf(obo:CL_0001032 obo:CL_0000120) +SubClassOf(obo:CL_0001032 obo:CL_0010012) +SubClassOf(obo:CL_0001032 obo:CL_0012001) # Class: obo:CL_0001033 (hippocampal granule cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:mah") obo:IAO_0000115 obo:CL_0001033 "Granule cell with a soma found in the hippocampus.") AnnotationAssertion(rdfs:label obo:CL_0001033 "hippocampal granule cell") EquivalentClasses(obo:CL_0001033 ObjectIntersectionOf(obo:CL_0000120 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002421))) +SubClassOf(obo:CL_0001033 obo:CL_0001032) +SubClassOf(obo:CL_0001033 obo:CL_0002608) # Class: obo:CL_0001034 (cell in vitro) @@ -14720,6 +16601,8 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0001035 cl:general_cell_types_upper AnnotationAssertion(oboInOwl:inSubset obo:CL_0001035 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0001035 "bone cell") EquivalentClasses(obo:CL_0001035 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001474))) +SubClassOf(obo:CL_0001035 obo:CL_0000000) +SubClassOf(obo:CL_0001035 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001474)) # Class: obo:CL_0001039 (terminally differentiated osteoblast) @@ -14735,6 +16618,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0001040 "VSAO:0000117") AnnotationAssertion(rdfs:comment obo:CL_0001040 "VSAO relationship simplified OBO_REL:integral_part_of VSAO:0000118") AnnotationAssertion(rdfs:label obo:CL_0001040 "non-terminally differentiated osteoblast") SubClassOf(obo:CL_0001040 obo:CL_0000062) +SubClassOf(obo:CL_0001040 obo:CL_0001035) SubClassOf(obo:CL_0001040 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002481)) # Class: obo:CL_0001041 (CD8-positive, CXCR3-positive, alpha-beta regulatory T cell) @@ -14754,6 +16638,10 @@ AnnotationAssertion(rdfs:comment obo:CL_0001041 "These cells may be the human eq AnnotationAssertion(rdfs:label obo:CL_0001041 "CD8-positive, CXCR3-positive, alpha-beta regulatory T cell") EquivalentClasses(obo:CL_0001041 ObjectIntersectionOf(obo:CL_0000795 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001207) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032613) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032689) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0042130))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0001041 obo:CL_0000795) +SubClassOf(obo:CL_0001041 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001207)) +SubClassOf(obo:CL_0001041 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032613)) +SubClassOf(obo:CL_0001041 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032689)) +SubClassOf(obo:CL_0001041 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0042130)) # Class: obo:CL_0001042 (T-helper 22 cell) @@ -14770,7 +16658,7 @@ AnnotationAssertion(rdfs:comment obo:CL_0001042 "TH22 cells are also reportedly AnnotationAssertion(rdfs:label obo:CL_0001042 "T-helper 22 cell") EquivalentClasses(obo:CL_0001042 ObjectIntersectionOf(obo:CL_0000492 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032626))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0001042 obo:CL_0000492) -SubClassOf(obo:CL_0001042 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000896)) +SubClassOf(obo:CL_0001042 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032626)) # Class: obo:CL_0001043 (activated CD4-positive, alpha-beta T cell, human) @@ -14784,6 +16672,8 @@ AnnotationAssertion(rdfs:comment obo:CL_0001043 "This cell type is compatible wi AnnotationAssertion(rdfs:label obo:CL_0001043 "activated CD4-positive, alpha-beta T cell, human") EquivalentClasses(obo:CL_0001043 ObjectIntersectionOf(obo:CL_0000896 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002015))) SubClassOf(obo:CL_0001043 obo:CL_0000896) +SubClassOf(obo:CL_0001043 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408)) +SubClassOf(obo:CL_0001043 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002015)) # Class: obo:CL_0001044 (effector CD4-positive, alpha-beta T cell) @@ -14796,7 +16686,10 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0001044 cl:cellxgene_subset) AnnotationAssertion(rdfs:comment obo:CL_0001044 "This cell type is compatible with the HIPC Lyoplate markers for 'effector CD4+ T cell'. The functional characteristics of this cell type currently undefined in CL, which affects its proper placement within the hierarchy.") AnnotationAssertion(rdfs:label obo:CL_0001044 "effector CD4-positive, alpha-beta T cell") EquivalentClasses(obo:CL_0001044 ObjectIntersectionOf(obo:CL_0000911 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001203) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000025402) ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0042105) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001004) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001015))) +SubClassOf(obo:CL_0001044 obo:CL_0000624) SubClassOf(obo:CL_0001044 obo:CL_0000911) +SubClassOf(obo:CL_0001044 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001203)) +SubClassOf(obo:CL_0001044 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001015)) # Class: obo:CL_0001045 (naive CCR4-positive regulatory T cell) @@ -14808,7 +16701,9 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0001045 "naive CCR4-positive AnnotationAssertion(rdfs:comment obo:CL_0001045 "This cell type is compatible with the HIPC Lyoplate markers for 'naive CCR4+ Treg'. The definition is valid for human; its applicability for mouse and other species is unknown.") AnnotationAssertion(rdfs:label obo:CL_0001045 "naive CCR4-positive regulatory T cell") EquivalentClasses(obo:CL_0001045 ObjectIntersectionOf(obo:CL_0002677 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001017) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001200))) +SubClassOf(obo:CL_0001045 obo:CL_0001047) SubClassOf(obo:CL_0001045 obo:CL_0002677) +SubClassOf(obo:CL_0001045 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001017)) # Class: obo:CL_0001046 (memory CCR4-positive regulatory T cell) @@ -14820,7 +16715,10 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0001046 "memory CCR4-positiv AnnotationAssertion(rdfs:comment obo:CL_0001046 "This cell type is compatible with the HIPC Lyoplate markers for 'memory CCR4+ Treg'. The definition is valid for human; its applicability for mouse and other species is unknown.") AnnotationAssertion(rdfs:label obo:CL_0001046 "memory CCR4-positive regulatory T cell") EquivalentClasses(obo:CL_0001046 ObjectIntersectionOf(obo:CL_0002678 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001017) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001200) ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_9606))) +SubClassOf(obo:CL_0001046 obo:CL_0001047) SubClassOf(obo:CL_0001046 obo:CL_0002678) +SubClassOf(obo:CL_0001046 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001017)) +SubClassOf(obo:CL_0001046 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_9606)) # Class: obo:CL_0001047 (CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T cell) @@ -14833,6 +16731,7 @@ AnnotationAssertion(rdfs:comment obo:CL_0001047 "This cell type is compatible wi AnnotationAssertion(rdfs:label obo:CL_0001047 "CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T cell") EquivalentClasses(obo:CL_0001047 ObjectIntersectionOf(obo:CL_0000792 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001200))) SubClassOf(obo:CL_0001047 obo:CL_0000792) +SubClassOf(obo:CL_0001047 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001200)) # Class: obo:CL_0001048 (activated CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T cell, human) @@ -14845,6 +16744,7 @@ AnnotationAssertion(rdfs:comment obo:CL_0001048 "This cell type is compatible wi AnnotationAssertion(rdfs:label obo:CL_0001048 "activated CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T cell, human") EquivalentClasses(obo:CL_0001048 ObjectIntersectionOf(obo:CL_0001047 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002015))) SubClassOf(obo:CL_0001048 obo:CL_0001047) +SubClassOf(obo:CL_0001048 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002015)) # Class: obo:CL_0001049 (activated CD8-positive, alpha-beta T cell, human) @@ -14858,6 +16758,8 @@ AnnotationAssertion(rdfs:comment obo:CL_0001049 "This cell type is compatible wi AnnotationAssertion(rdfs:label obo:CL_0001049 "activated CD8-positive, alpha-beta T cell, human") EquivalentClasses(obo:CL_0001049 ObjectIntersectionOf(obo:CL_0000906 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002015))) SubClassOf(obo:CL_0001049 obo:CL_0000906) +SubClassOf(obo:CL_0001049 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408)) +SubClassOf(obo:CL_0001049 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002015)) # Class: obo:CL_0001050 (effector CD8-positive, alpha-beta T cell) @@ -14872,7 +16774,10 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0001050 core:human_reference_atlas) AnnotationAssertion(rdfs:comment obo:CL_0001050 "This cell type is compatible with the HIPC Lyoplate markers for 'effector CD8+ T cell'. The functional characteristics of this cell type currently undefined in CL, which affects its proper placement within the hierarchy.") AnnotationAssertion(rdfs:label obo:CL_0001050 "effector CD8-positive, alpha-beta T cell") EquivalentClasses(obo:CL_0001050 ObjectIntersectionOf(obo:CL_0000911 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001203) ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0042105) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001015) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000025402))) +SubClassOf(obo:CL_0001050 obo:CL_0000625) SubClassOf(obo:CL_0001050 obo:CL_0000911) +SubClassOf(obo:CL_0001050 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001203)) +SubClassOf(obo:CL_0001050 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001015)) # Class: obo:CL_0001051 (CD4-positive, CXCR3-negative, CCR6-negative, alpha-beta T cell) @@ -14885,6 +16790,8 @@ AnnotationAssertion(rdfs:comment obo:CL_0001051 "This cell type is compatible wi AnnotationAssertion(rdfs:label obo:CL_0001051 "CD4-positive, CXCR3-negative, CCR6-negative, alpha-beta T cell") EquivalentClasses(obo:CL_0001051 ObjectIntersectionOf(obo:CL_0000624 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001202) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001207))) SubClassOf(obo:CL_0001051 obo:CL_0000624) +SubClassOf(obo:CL_0001051 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001202)) +SubClassOf(obo:CL_0001051 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001207)) # Class: obo:CL_0001052 (CD8-positive, CXCR3-negative, CCR6-negative, alpha-beta T cell) @@ -14897,6 +16804,8 @@ AnnotationAssertion(rdfs:comment obo:CL_0001052 "This cell type is compatible wi AnnotationAssertion(rdfs:label obo:CL_0001052 "CD8-positive, CXCR3-negative, CCR6-negative, alpha-beta T cell") EquivalentClasses(obo:CL_0001052 ObjectIntersectionOf(obo:CL_0000625 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001202) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001207))) SubClassOf(obo:CL_0001052 obo:CL_0000625) +SubClassOf(obo:CL_0001052 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001202)) +SubClassOf(obo:CL_0001052 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001207)) # Class: obo:CL_0001053 (IgD-negative memory B cell) @@ -14906,6 +16815,7 @@ AnnotationAssertion(rdfs:comment obo:CL_0001053 "This cell type is compatible wi AnnotationAssertion(rdfs:label obo:CL_0001053 "IgD-negative memory B cell") EquivalentClasses(obo:CL_0001053 ObjectIntersectionOf(obo:CL_0000787 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0071738))) SubClassOf(obo:CL_0001053 obo:CL_0000787) +SubClassOf(obo:CL_0001053 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0071738)) # Class: obo:CL_0001054 (CD14-positive monocyte) @@ -14918,6 +16828,10 @@ AnnotationAssertion(rdfs:comment obo:CL_0001054 "This cell type is compatible wi AnnotationAssertion(rdfs:label obo:CL_0001054 "CD14-positive monocyte") EquivalentClasses(obo:CL_0001054 ObjectIntersectionOf(obo:CL_0000576 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001889))) SubClassOf(obo:CL_0001054 obo:CL_0000576) +SubClassOf(obo:CL_0001054 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002)) +SubClassOf(obo:CL_0001054 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020)) +SubClassOf(obo:CL_0001054 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289)) +SubClassOf(obo:CL_0001054 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001889)) # Class: obo:CL_0001055 (CD14-positive, CD16-low monocyte) @@ -14929,6 +16843,8 @@ AnnotationAssertion(rdfs:comment obo:CL_0001055 "Definition is valid for human i AnnotationAssertion(rdfs:label obo:CL_0001055 "CD14-positive, CD16-low monocyte") EquivalentClasses(obo:CL_0001055 ObjectIntersectionOf(obo:CL_0002393 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001889) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001483))) SubClassOf(obo:CL_0001055 obo:CL_0002393) +SubClassOf(obo:CL_0001055 obo:CL_0002397) +SubClassOf(obo:CL_0001055 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001483)) # Class: obo:CL_0001056 (dendritic cell, human) @@ -14941,6 +16857,7 @@ AnnotationAssertion(rdfs:comment obo:CL_0001056 "This cell type is compatible wi AnnotationAssertion(rdfs:label obo:CL_0001056 "dendritic cell, human") EquivalentClasses(obo:CL_0001056 ObjectIntersectionOf(obo:CL_0000451 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002015))) SubClassOf(obo:CL_0001056 obo:CL_0000451) +SubClassOf(obo:CL_0001056 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002015)) # Class: obo:CL_0001057 (myeloid dendritic cell, human) @@ -14951,6 +16868,7 @@ AnnotationAssertion(rdfs:comment obo:CL_0001057 "This cell type is compatible wi AnnotationAssertion(rdfs:label obo:CL_0001057 "myeloid dendritic cell, human") EquivalentClasses(obo:CL_0001057 ObjectIntersectionOf(obo:CL_0000782 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002015))) SubClassOf(obo:CL_0001057 obo:CL_0000782) +SubClassOf(obo:CL_0001057 obo:CL_0001056) # Class: obo:CL_0001058 (plasmacytoid dendritic cell, human) @@ -14963,6 +16881,9 @@ AnnotationAssertion(rdfs:comment obo:CL_0001058 "This cell type is compatible wi AnnotationAssertion(rdfs:label obo:CL_0001058 "plasmacytoid dendritic cell, human") EquivalentClasses(obo:CL_0001058 ObjectIntersectionOf(obo:CL_0000784 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001013) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001865) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002015))) SubClassOf(obo:CL_0001058 obo:CL_0000784) +SubClassOf(obo:CL_0001058 obo:CL_0001056) +SubClassOf(obo:CL_0001058 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001013)) +SubClassOf(obo:CL_0001058 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001865)) # Class: obo:CL_0001059 (common myeloid progenitor, CD34-positive) @@ -14979,6 +16900,13 @@ AnnotationAssertion(rdfs:comment obo:CL_0001059 "CMP are reportedly CD16-positiv AnnotationAssertion(rdfs:label obo:CL_0001059 "common myeloid progenitor, CD34-positive") EquivalentClasses(obo:CL_0001059 ObjectIntersectionOf(obo:CL_0000049 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001944) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000005307) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000007857) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000007858) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002573) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0043011))) SubClassOf(obo:CL_0001059 obo:CL_0000049) +SubClassOf(obo:CL_0001059 obo:CL_0011026) +SubClassOf(obo:CL_0001059 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001944)) +SubClassOf(obo:CL_0001059 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000005307)) +SubClassOf(obo:CL_0001059 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000007857)) +SubClassOf(obo:CL_0001059 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000007858)) +SubClassOf(obo:CL_0001059 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003)) +SubClassOf(obo:CL_0001059 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0043011)) # Class: obo:CL_0001060 (hematopoietic oligopotent progenitor cell, lineage-negative) @@ -14988,8 +16916,18 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0001060 "2010-01-06T03:43:27Z" AnnotationAssertion(rdfs:label obo:CL_0001060 "hematopoietic oligopotent progenitor cell, lineage-negative") EquivalentClasses(obo:CL_0001060 ObjectIntersectionOf(obo:CL_0002032 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001024) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001083) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001839) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001889) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002978) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002981) ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001401))) SubClassOf(obo:CL_0001060 obo:CL_0002032) -SubClassOf(obo:CL_0001060 obo:CL_0008001) -SubClassOf(obo:CL_0001060 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000837)) +SubClassOf(obo:CL_0001060 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002)) +SubClassOf(obo:CL_0001060 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004)) +SubClassOf(obo:CL_0001060 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012)) +SubClassOf(obo:CL_0001060 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020)) +SubClassOf(obo:CL_0001060 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001024)) +SubClassOf(obo:CL_0001060 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001083)) +SubClassOf(obo:CL_0001060 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084)) +SubClassOf(obo:CL_0001060 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289)) +SubClassOf(obo:CL_0001060 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001839)) +SubClassOf(obo:CL_0001060 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001889)) +SubClassOf(obo:CL_0001060 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002978)) +SubClassOf(obo:CL_0001060 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002981)) # Class: obo:CL_0001061 (abnormal cell) @@ -15002,6 +16940,7 @@ AnnotationAssertion(rdfs:comment obo:CL_0001061 "https://github.com/obophenotype AnnotationAssertion(rdfs:label obo:CL_0001061 "abnormal cell") EquivalentClasses(obo:CL_0001061 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0000460))) SubClassOf(obo:CL_0001061 obo:CL_0000000) +SubClassOf(obo:CL_0001061 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0000460)) # Class: obo:CL_0001062 (effector memory CD8-positive, alpha-beta T cell, terminally differentiated) @@ -15017,6 +16956,10 @@ AnnotationAssertion(rdfs:label obo:CL_0001062 "effector memory CD8-positive, alp EquivalentClasses(obo:CL_0001062 ObjectIntersectionOf(obo:CL_0000909 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001017) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001203) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001015) ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_9606) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0043379))) SubClassOf(obo:CL_0001062 obo:CL_0000909) SubClassOf(obo:CL_0001062 obo:CL_4030002) +SubClassOf(obo:CL_0001062 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001017)) +SubClassOf(obo:CL_0001062 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001203)) +SubClassOf(obo:CL_0001062 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001015)) +SubClassOf(obo:CL_0001062 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_9606)) SubClassOf(obo:CL_0001062 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000913)) # Class: obo:CL_0001063 (neoplastic cell) @@ -15032,6 +16975,7 @@ AnnotationAssertion(rdfs:comment obo:CL_0001063 "https://github.com/obophenotype AnnotationAssertion(rdfs:label obo:CL_0001063 "neoplastic cell") EquivalentClasses(obo:CL_0001063 ObjectIntersectionOf(obo:CL_0001061 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0002011))) SubClassOf(obo:CL_0001063 obo:CL_0001061) +SubClassOf(obo:CL_0001063 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0002011)) # Class: obo:CL_0001064 (malignant cell) @@ -15045,6 +16989,7 @@ AnnotationAssertion(rdfs:comment obo:CL_0001064 "https://github.com/obophenotype AnnotationAssertion(rdfs:label obo:CL_0001064 "malignant cell") EquivalentClasses(obo:CL_0001064 ObjectIntersectionOf(obo:CL_0001063 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0002097))) SubClassOf(obo:CL_0001064 obo:CL_0001063) +SubClassOf(obo:CL_0001064 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0002097)) # Class: obo:CL_0001065 (innate lymphoid cell) @@ -15057,6 +17002,11 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0001065 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0001065 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0001065 "innate lymphoid cell") EquivalentClasses(obo:CL_0001065 ObjectIntersectionOf(obo:CL_0000542 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001816) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045087))) +SubClassOf(obo:CL_0001065 obo:CL_0000542) +SubClassOf(obo:CL_0001065 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002)) +SubClassOf(obo:CL_0001065 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020)) +SubClassOf(obo:CL_0001065 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001816)) +SubClassOf(obo:CL_0001065 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045087)) # Class: obo:CL_0001066 (erythroid progenitor cell, mammalian) @@ -15072,6 +17022,19 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0001066 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0001066 "erythroid progenitor cell, mammalian") EquivalentClasses(obo:CL_0001066 ObjectIntersectionOf(obo:CL_0000038 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001024) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001083) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001839) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001889) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002978) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001945) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030218))) SubClassOf(obo:CL_0001066 obo:CL_0000038) +SubClassOf(obo:CL_0001066 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002)) +SubClassOf(obo:CL_0001066 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004)) +SubClassOf(obo:CL_0001066 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012)) +SubClassOf(obo:CL_0001066 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020)) +SubClassOf(obo:CL_0001066 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001024)) +SubClassOf(obo:CL_0001066 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001083)) +SubClassOf(obo:CL_0001066 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084)) +SubClassOf(obo:CL_0001066 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289)) +SubClassOf(obo:CL_0001066 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001839)) +SubClassOf(obo:CL_0001066 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001889)) +SubClassOf(obo:CL_0001066 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002978)) +SubClassOf(obo:CL_0001066 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001945)) +SubClassOf(obo:CL_0001066 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030218)) # Class: obo:CL_0001067 (group 1 innate lymphoid cell) @@ -15082,6 +17045,8 @@ AnnotationAssertion(terms:date obo:CL_0001067 "2017-01-30T20:42:44Z"^^xsd:dateTi AnnotationAssertion(oboInOwl:inSubset obo:CL_0001067 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0001067 "group 1 innate lymphoid cell") EquivalentClasses(obo:CL_0001067 ObjectIntersectionOf(obo:CL_0001065 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032609))) +SubClassOf(obo:CL_0001067 obo:CL_0001065) +SubClassOf(obo:CL_0001067 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032609)) # Class: obo:CL_0001068 (ILC1) @@ -15104,6 +17069,8 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0001069 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0001069 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0001069 "group 2 innate lymphoid cell") EquivalentClasses(obo:CL_0001069 ObjectIntersectionOf(obo:CL_0001065 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032634))) +SubClassOf(obo:CL_0001069 obo:CL_0001065) +SubClassOf(obo:CL_0001069 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032634)) # Class: obo:CL_0001070 (beige adipocyte) @@ -15132,6 +17099,8 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0001071 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0001071 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0001071 "group 3 innate lymphoid cell") EquivalentClasses(obo:CL_0001071 ObjectIntersectionOf(obo:CL_0001065 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000003455))) +SubClassOf(obo:CL_0001071 obo:CL_0001065) +SubClassOf(obo:CL_0001071 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000003455)) # Class: obo:CL_0001072 (CD34-negative, CD117-positive innate lymphoid cell, human) @@ -15141,6 +17110,10 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0001072 "CD34-negative, CD11 AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0001072 "CD34-negative, CD117-positive innate lymphoid cell precusor") AnnotationAssertion(rdfs:label obo:CL_0001072 "CD34-negative, CD117-positive innate lymphoid cell, human") EquivalentClasses(obo:CL_0001072 ObjectIntersectionOf(obo:CL_0001065 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_P28906) ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001501) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_P10721) ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_9606))) +SubClassOf(obo:CL_0001072 obo:CL_0001082) +SubClassOf(obo:CL_0001072 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_P28906)) +SubClassOf(obo:CL_0001072 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_P10721)) +SubClassOf(obo:CL_0001072 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_9606)) SubClassOf(obo:CL_0001072 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0001074)) # Class: obo:CL_0001073 (CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human) @@ -15151,6 +17124,8 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0001073 "CD34-negative, CD56 AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0001073 "CD34-negative, CD56-positive, CD117-positive innate lymphoid cell precursor") AnnotationAssertion(rdfs:label obo:CL_0001073 "CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human") EquivalentClasses(obo:CL_0001073 ObjectIntersectionOf(obo:CL_0001072 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_P10721) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_P13591) ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_9606))) +SubClassOf(obo:CL_0001073 obo:CL_0001072) +SubClassOf(obo:CL_0001073 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_P13591)) # Class: obo:CL_0001074 (CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human) @@ -15159,6 +17134,11 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0001074 "CD34-positive, CD56 AnnotationAssertion(oboInOwl:inSubset obo:CL_0001074 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0001074 "CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human") EquivalentClasses(obo:CL_0001074 ObjectIntersectionOf(obo:CL_0001065 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001501) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_P10721) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_P13591) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_P28906) ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_9606))) +SubClassOf(obo:CL_0001074 obo:CL_0001082) +SubClassOf(obo:CL_0001074 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_P10721)) +SubClassOf(obo:CL_0001074 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_P13591)) +SubClassOf(obo:CL_0001074 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_P28906)) +SubClassOf(obo:CL_0001074 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_9606)) # Class: obo:CL_0001075 (KLRG1-positive innate lymphoid cell, human) @@ -15166,6 +17146,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0001075 "KLRG1-positive ILC") AnnotationAssertion(rdfs:label obo:CL_0001075 "KLRG1-positive innate lymphoid cell, human") EquivalentClasses(obo:CL_0001075 ObjectIntersectionOf(obo:CL_0001072 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_Q96E93) ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_9606))) +SubClassOf(obo:CL_0001075 obo:CL_0001072) +SubClassOf(obo:CL_0001075 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_Q96E93)) # Class: obo:CL_0001076 (NKp46-positive innate lymphoid cell, human) @@ -15174,6 +17156,8 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0001076 "NKp46-positive ILC" AnnotationAssertion(oboInOwl:inSubset obo:CL_0001076 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0001076 "NKp46-positive innate lymphoid cell, human") EquivalentClasses(obo:CL_0001076 ObjectIntersectionOf(obo:CL_0001074 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_O76036) ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_9606))) +SubClassOf(obo:CL_0001076 obo:CL_0001074) +SubClassOf(obo:CL_0001076 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_O76036)) # Class: obo:CL_0001077 (ILC1, human) @@ -15182,6 +17166,10 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0001077 "innate lymphoid cel AnnotationAssertion(oboInOwl:inSubset obo:CL_0001077 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0001077 "ILC1, human") EquivalentClasses(obo:CL_0001077 ObjectIntersectionOf(obo:CL_0001068 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_Q9UL17) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_P16871) ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_9606))) +SubClassOf(obo:CL_0001077 obo:CL_0001068) +SubClassOf(obo:CL_0001077 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_Q9UL17)) +SubClassOf(obo:CL_0001077 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_P16871)) +SubClassOf(obo:CL_0001077 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_9606)) # Class: obo:CL_0001078 (group 3 innate lymphoid cell, human) @@ -15192,6 +17180,9 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0001078 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0001078 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0001078 "group 3 innate lymphoid cell, human") EquivalentClasses(obo:CL_0001078 ObjectIntersectionOf(obo:CL_0001071 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_P16871) ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_9606))) +SubClassOf(obo:CL_0001078 obo:CL_0001071) +SubClassOf(obo:CL_0001078 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_P16871)) +SubClassOf(obo:CL_0001078 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_9606)) # Class: obo:CL_0001079 (NKp44-positive group 3 innate lymphoid cell, human) @@ -15199,6 +17190,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl AnnotationAssertion(oboInOwl:inSubset obo:CL_0001079 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0001079 "NKp44-positive group 3 innate lymphoid cell, human") EquivalentClasses(obo:CL_0001079 ObjectIntersectionOf(obo:CL_0001071 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_O95944) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_P16871) ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_9606))) +SubClassOf(obo:CL_0001079 obo:CL_0001078) +SubClassOf(obo:CL_0001079 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_O95944)) # Class: obo:CL_0001080 (NKp44-negative group 3 innate lymphoid cell, human) @@ -15206,6 +17199,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl AnnotationAssertion(oboInOwl:inSubset obo:CL_0001080 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0001080 "NKp44-negative group 3 innate lymphoid cell, human") EquivalentClasses(obo:CL_0001080 ObjectIntersectionOf(obo:CL_0001071 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_O95944) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_P16871) ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_9606))) +SubClassOf(obo:CL_0001080 obo:CL_0001078) +SubClassOf(obo:CL_0001080 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_O95944)) # Class: obo:CL_0001081 (group 2 innate lymphoid cell, human) @@ -15214,6 +17209,13 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0001081 "ILC2, human") AnnotationAssertion(oboInOwl:inSubset obo:CL_0001081 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0001081 "group 2 innate lymphoid cell, human") EquivalentClasses(obo:CL_0001081 ObjectIntersectionOf(obo:CL_0001069 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_P23771) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_P01589) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_P16871) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_Q12918) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_Q9Y5Y4) ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_9606))) +SubClassOf(obo:CL_0001081 obo:CL_0001069) +SubClassOf(obo:CL_0001081 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_P23771)) +SubClassOf(obo:CL_0001081 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_P01589)) +SubClassOf(obo:CL_0001081 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_P16871)) +SubClassOf(obo:CL_0001081 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_Q12918)) +SubClassOf(obo:CL_0001081 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_Q9Y5Y4)) +SubClassOf(obo:CL_0001081 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_9606)) # Class: obo:CL_0001082 (immature innate lymphoid cell) @@ -15222,6 +17224,8 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0001082 "immature ILC") AnnotationAssertion(oboInOwl:inSubset obo:CL_0001082 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0001082 "immature innate lymphoid cell") EquivalentClasses(obo:CL_0001082 ObjectIntersectionOf(obo:CL_0001065 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001501))) +SubClassOf(obo:CL_0001082 obo:CL_0001065) +SubClassOf(obo:CL_0001082 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001501)) # Class: obo:CL_0001087 (effector memory CD4-positive, alpha-beta T cell, terminally differentiated) @@ -15238,6 +17242,10 @@ AnnotationAssertion(rdfs:label obo:CL_0001087 "effector memory CD4-positive, alp EquivalentClasses(obo:CL_0001087 ObjectIntersectionOf(obo:CL_0000897 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001017) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001203) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001015) ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_9606) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0043379))) SubClassOf(obo:CL_0001087 obo:CL_0000897) SubClassOf(obo:CL_0001087 obo:CL_4030002) +SubClassOf(obo:CL_0001087 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001017)) +SubClassOf(obo:CL_0001087 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001203)) +SubClassOf(obo:CL_0001087 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001015)) +SubClassOf(obo:CL_0001087 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_9606)) SubClassOf(obo:CL_0001087 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000905)) # Class: obo:CL_0001200 (lymphocyte of B lineage, CD19-positive) @@ -15248,6 +17256,9 @@ AnnotationAssertion(rdfs:comment obo:CL_0001200 "Types of B lineage lymphocytes AnnotationAssertion(rdfs:label obo:CL_0001200 "lymphocyte of B lineage, CD19-positive") EquivalentClasses(obo:CL_0001200 ObjectIntersectionOf(obo:CL_0000945 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001002) ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_40674))) SubClassOf(obo:CL_0001200 obo:CL_0000945) +SubClassOf(obo:CL_0001200 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020)) +SubClassOf(obo:CL_0001200 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001002)) +SubClassOf(obo:CL_0001200 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_40674)) # Class: obo:CL_0001201 (B cell, CD19-positive) @@ -15261,6 +17272,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0001201 "CD19-positive B cel AnnotationAssertion(rdfs:label obo:CL_0001201 "B cell, CD19-positive") EquivalentClasses(obo:CL_0001201 ObjectIntersectionOf(obo:CL_0001200 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001002) ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_40674) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0019724))) SubClassOf(obo:CL_0001201 obo:CL_0000236) +SubClassOf(obo:CL_0001201 obo:CL_0001200) # Class: obo:CL_0001202 (CD86-positive plasmablast) @@ -15271,6 +17283,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0001202 "CD86+ plasmablast") AnnotationAssertion(rdfs:label obo:CL_0001202 "CD86-positive plasmablast") EquivalentClasses(obo:CL_0001202 ObjectIntersectionOf(obo:CL_0000980 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001412))) SubClassOf(obo:CL_0001202 obo:CL_0000980) +SubClassOf(obo:CL_0001202 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001412)) # Class: obo:CL_0001203 (CD8-positive, alpha-beta memory T cell, CD45RO-positive) @@ -15284,7 +17297,13 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0001203 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0001203 "CD8-positive, alpha-beta memory T cell, CD45RO-positive") EquivalentClasses(obo:CL_0001203 ObjectIntersectionOf(obo:CL_0000909 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001380) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001017) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001869) ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_9606) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0043379) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001307) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001381))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0001203 obo:CL_0000909) +SubClassOf(obo:CL_0001203 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001380)) +SubClassOf(obo:CL_0001203 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001017)) +SubClassOf(obo:CL_0001203 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001869)) +SubClassOf(obo:CL_0001203 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_9606)) SubClassOf(obo:CL_0001203 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000906)) +SubClassOf(obo:CL_0001203 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001307)) +SubClassOf(obo:CL_0001203 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001381)) # Class: obo:CL_0001204 (CD4-positive, alpha-beta memory T cell, CD45RO-positive) @@ -15295,11 +17314,17 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0001204 "CD4-positive, alpha AnnotationAssertion(rdfs:label obo:CL_0001204 "CD4-positive, alpha-beta memory T cell, CD45RO-positive") EquivalentClasses(obo:CL_0001204 ObjectIntersectionOf(obo:CL_0000897 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001380) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001017) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001869) ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_9606) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0043379) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001307) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001381))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0001204 obo:CL_0000897) +SubClassOf(obo:CL_0001204 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001380)) +SubClassOf(obo:CL_0001204 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001017)) +SubClassOf(obo:CL_0001204 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001869)) +SubClassOf(obo:CL_0001204 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_9606)) SubClassOf(obo:CL_0001204 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000896)) +SubClassOf(obo:CL_0001204 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001307)) +SubClassOf(obo:CL_0001204 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001381)) # Class: obo:CL_0001658 (visual pigment cell (sensu Nematoda and Protostomia)) -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0001658 "FBbt:00004230") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0001658 "FBbt:00004230") AnnotationAssertion(rdfs:label obo:CL_0001658 "visual pigment cell (sensu Nematoda and Protostomia)") SubClassOf(obo:CL_0001658 obo:CL_0000149) SubClassOf(obo:CL_0001658 obo:CL_0000341) @@ -15314,6 +17339,14 @@ AnnotationAssertion(rdfs:comment obo:CL_0002000 "Markers found on mouse cells.") AnnotationAssertion(rdfs:label obo:CL_0002000 "Kit-positive erythroid progenitor cell") EquivalentClasses(obo:CL_0002000 ObjectIntersectionOf(obo:CL_0001066 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0033001) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001833) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001865) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001869) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002979) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000009127) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001345) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002065))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002000 obo:CL_0001066) +SubClassOf(obo:CL_0002000 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0033001)) +SubClassOf(obo:CL_0002000 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001833)) +SubClassOf(obo:CL_0002000 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001865)) +SubClassOf(obo:CL_0002000 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001869)) +SubClassOf(obo:CL_0002000 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002979)) +SubClassOf(obo:CL_0002000 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000009127)) +SubClassOf(obo:CL_0002000 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001345)) +SubClassOf(obo:CL_0002000 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002065)) SubClassOf(obo:CL_0002000 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002006)) # Class: obo:CL_0002001 (CD34-positive, CD38-positive granulocyte monocyte progenitor) @@ -15325,6 +17358,8 @@ AnnotationAssertion(rdfs:comment obo:CL_0002001 "Markers are for human cells. Ac AnnotationAssertion(rdfs:label obo:CL_0002001 "CD34-positive, CD38-positive granulocyte monocyte progenitor") EquivalentClasses(obo:CL_0002001 ObjectIntersectionOf(obo:CL_0000557 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001865))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002001 obo:CL_0000557) +SubClassOf(obo:CL_0002001 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003)) +SubClassOf(obo:CL_0002001 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408)) SubClassOf(obo:CL_0002001 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0001026)) # Class: obo:CL_0002002 (Kit-positive granulocyte monocyte progenitor) @@ -15336,7 +17371,15 @@ AnnotationAssertion(rdfs:comment obo:CL_0002002 "Markers are found on mouse cell AnnotationAssertion(rdfs:label obo:CL_0002002 "Kit-positive granulocyte monocyte progenitor") EquivalentClasses(obo:CL_0002002 ObjectIntersectionOf(obo:CL_0000557 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001206) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001843) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001869) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002979) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002065) ObjectSomeValuesFrom(obo:RO_0015015 obo:GO_0033001) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001479))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002002 obo:CL_0000557) +SubClassOf(obo:CL_0002002 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001206)) +SubClassOf(obo:CL_0002002 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001843)) +SubClassOf(obo:CL_0002002 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001869)) +SubClassOf(obo:CL_0002002 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002979)) +SubClassOf(obo:CL_0002002 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003)) +SubClassOf(obo:CL_0002002 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002065)) SubClassOf(obo:CL_0002002 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0001023)) +SubClassOf(obo:CL_0002002 ObjectSomeValuesFrom(obo:RO_0015015 obo:GO_0033001)) +SubClassOf(obo:CL_0002002 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001479)) # Class: obo:CL_0002003 (CD34-positive, GlyA-negative erythroid progenitor cell) @@ -15348,6 +17391,8 @@ AnnotationAssertion(rdfs:comment obo:CL_0002003 "Cell markers associated with hu AnnotationAssertion(rdfs:label obo:CL_0002003 "CD34-positive, GlyA-negative erythroid progenitor cell") EquivalentClasses(obo:CL_0002003 ObjectIntersectionOf(obo:CL_0001066 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001460) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002003 obo:CL_0001066) +SubClassOf(obo:CL_0002003 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001460)) +SubClassOf(obo:CL_0002003 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003)) SubClassOf(obo:CL_0002003 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002005)) # Class: obo:CL_0002004 (CD34-negative, GlyA-negative proerythroblast) @@ -15359,6 +17404,8 @@ AnnotationAssertion(rdfs:comment obo:CL_0002004 "Cell surface markers are associ AnnotationAssertion(rdfs:label obo:CL_0002004 "CD34-negative, GlyA-negative proerythroblast") EquivalentClasses(obo:CL_0002004 ObjectIntersectionOf(obo:CL_0000547 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001003) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001460))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002004 obo:CL_0000547) +SubClassOf(obo:CL_0002004 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001003)) +SubClassOf(obo:CL_0002004 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001460)) SubClassOf(obo:CL_0002004 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002003)) # Class: obo:CL_0002005 (CD34-positive, CD38-positive megakaryocyte erythroid progenitor cell) @@ -15370,6 +17417,10 @@ AnnotationAssertion(rdfs:comment obo:CL_0002005 "Markers are associated with hum AnnotationAssertion(rdfs:label obo:CL_0002005 "CD34-positive, CD38-positive megakaryocyte erythroid progenitor cell") EquivalentClasses(obo:CL_0002005 ObjectIntersectionOf(obo:CL_0000050 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001015) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001865) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002005 obo:CL_0000050) +SubClassOf(obo:CL_0002005 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001015)) +SubClassOf(obo:CL_0002005 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001865)) +SubClassOf(obo:CL_0002005 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003)) +SubClassOf(obo:CL_0002005 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408)) # Class: obo:CL_0002006 (Kit-positive, CD34-negative megakaryocyte erythroid progenitor cell) @@ -15380,6 +17431,13 @@ AnnotationAssertion(rdfs:comment obo:CL_0002006 "Markers are associated with mou AnnotationAssertion(rdfs:label obo:CL_0002006 "Kit-positive, CD34-negative megakaryocyte erythroid progenitor cell") EquivalentClasses(obo:CL_0002006 ObjectIntersectionOf(obo:CL_0000050 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001003) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001479) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001843) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001869) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002979) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002065) ObjectSomeValuesFrom(obo:RO_0015016 obo:GO_0033001))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002006 obo:CL_0000050) +SubClassOf(obo:CL_0002006 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001003)) +SubClassOf(obo:CL_0002006 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001479)) +SubClassOf(obo:CL_0002006 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001843)) +SubClassOf(obo:CL_0002006 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001869)) +SubClassOf(obo:CL_0002006 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002979)) +SubClassOf(obo:CL_0002006 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002065)) +SubClassOf(obo:CL_0002006 ObjectSomeValuesFrom(obo:RO_0015016 obo:GO_0033001)) # Class: obo:CL_0002007 (Kit-low, CD34-positive eosinophil progenitor cell) @@ -15390,7 +17448,9 @@ AnnotationAssertion(rdfs:comment obo:CL_0002007 "Markers are found on mouse cell AnnotationAssertion(rdfs:label obo:CL_0002007 "Kit-low, CD34-positive eosinophil progenitor cell") EquivalentClasses(obo:CL_0002007 ObjectIntersectionOf(obo:CL_0000611 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002979) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001867) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000002065))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002007 obo:CL_0000611) +SubClassOf(obo:CL_0002007 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002979)) SubClassOf(obo:CL_0002007 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002002)) +SubClassOf(obo:CL_0002007 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000002065)) # Class: obo:CL_0002008 (CD34-positive, CD38-positive eosinophil progenitor cell) @@ -15401,6 +17461,7 @@ AnnotationAssertion(rdfs:comment obo:CL_0002008 "Markers are associated with hum AnnotationAssertion(rdfs:label obo:CL_0002008 "CD34-positive, CD38-positive eosinophil progenitor cell") EquivalentClasses(obo:CL_0002008 ObjectIntersectionOf(obo:CL_0000611 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001015) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001865))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002008 obo:CL_0000611) +SubClassOf(obo:CL_0002008 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001015)) SubClassOf(obo:CL_0002008 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002001)) # Class: obo:CL_0002009 (macrophage dendritic cell progenitor) @@ -15412,8 +17473,12 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002009 "MDP") AnnotationAssertion(oboInOwl:inSubset obo:CL_0002009 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0002009 "macrophage dendritic cell progenitor") EquivalentClasses(obo:CL_0002009 ObjectIntersectionOf(obo:CL_0002032 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030224) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0043011))) +SubClassOf(obo:CL_0002009 obo:CL_0000763) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002009 obo:CL_0002032) +SubClassOf(obo:CL_0002009 obo:CL_0011026) SubClassOf(obo:CL_0002009 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000557)) +SubClassOf(obo:CL_0002009 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030224)) +SubClassOf(obo:CL_0002009 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0043011)) # Class: obo:CL_0002010 (pre-conventional dendritic cell) @@ -15422,7 +17487,24 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002010 "2010-01-19T03:39:30Z" AnnotationAssertion(oboInOwl:inSubset obo:CL_0002010 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0002010 "pre-conventional dendritic cell") EquivalentClasses(obo:CL_0002010 ObjectIntersectionOf(obo:CL_0002031 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0042613) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001024) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001083) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001839) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001889) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002978) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002981) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001013) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001968) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002001))) +SubClassOf(obo:CL_0002010 obo:CL_0000763) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002010 obo:CL_0002031) +SubClassOf(obo:CL_0002010 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0042613)) +SubClassOf(obo:CL_0002010 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002)) +SubClassOf(obo:CL_0002010 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004)) +SubClassOf(obo:CL_0002010 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012)) +SubClassOf(obo:CL_0002010 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020)) +SubClassOf(obo:CL_0002010 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001024)) +SubClassOf(obo:CL_0002010 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001083)) +SubClassOf(obo:CL_0002010 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084)) +SubClassOf(obo:CL_0002010 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289)) +SubClassOf(obo:CL_0002010 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001839)) +SubClassOf(obo:CL_0002010 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001889)) +SubClassOf(obo:CL_0002010 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002978)) +SubClassOf(obo:CL_0002010 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002981)) +SubClassOf(obo:CL_0002010 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001013)) +SubClassOf(obo:CL_0002010 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001968)) +SubClassOf(obo:CL_0002010 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002001)) SubClassOf(obo:CL_0002010 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0001029)) # Class: obo:CL_0002011 (Kit-positive macrophage dendritic cell progenitor) @@ -15435,7 +17517,11 @@ AnnotationAssertion(rdfs:comment obo:CL_0002011 "Markers are associated with mou AnnotationAssertion(rdfs:label obo:CL_0002011 "Kit-positive macrophage dendritic cell progenitor") EquivalentClasses(obo:CL_0002011 ObjectIntersectionOf(obo:CL_0002009 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001206) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002001) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002062) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000002065))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002011 obo:CL_0002009) +SubClassOf(obo:CL_0002011 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001206)) +SubClassOf(obo:CL_0002011 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002001)) +SubClassOf(obo:CL_0002011 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002062)) SubClassOf(obo:CL_0002011 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002002)) +SubClassOf(obo:CL_0002011 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000002065)) # Class: obo:CL_0002012 (Kit-low proerythroblast) @@ -15446,7 +17532,12 @@ AnnotationAssertion(rdfs:comment obo:CL_0002012 "Markers are associated with mou AnnotationAssertion(rdfs:label obo:CL_0002012 "Kit-low proerythroblast") EquivalentClasses(obo:CL_0002012 ObjectIntersectionOf(obo:CL_0000547 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001869) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002979) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002981) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001945) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000002065))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002012 obo:CL_0000547) +SubClassOf(obo:CL_0002012 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001869)) +SubClassOf(obo:CL_0002012 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002979)) +SubClassOf(obo:CL_0002012 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002981)) SubClassOf(obo:CL_0002012 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002000)) +SubClassOf(obo:CL_0002012 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001945)) +SubClassOf(obo:CL_0002012 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000002065)) # Class: obo:CL_0002013 (GlyA-positive basophilic erythroblast) @@ -15457,6 +17548,8 @@ AnnotationAssertion(rdfs:comment obo:CL_0002013 "Markers are associated with hum AnnotationAssertion(rdfs:label obo:CL_0002013 "GlyA-positive basophilic erythroblast") EquivalentClasses(obo:CL_0002013 ObjectIntersectionOf(obo:CL_0000549 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001003) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001460))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002013 obo:CL_0000549) +SubClassOf(obo:CL_0002013 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001003)) +SubClassOf(obo:CL_0002013 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001460)) SubClassOf(obo:CL_0002013 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002004)) # Class: obo:CL_0002014 (Kit-negative, Ly-76 high basophilic erythroblast) @@ -15468,7 +17561,11 @@ AnnotationAssertion(rdfs:comment obo:CL_0002014 "Cell surface markers are associ AnnotationAssertion(rdfs:label obo:CL_0002014 "Kit-negative, Ly-76 high basophilic erythroblast") EquivalentClasses(obo:CL_0002014 ObjectIntersectionOf(obo:CL_0000549 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001869) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002065) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002979) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000002981))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002014 obo:CL_0000549) +SubClassOf(obo:CL_0002014 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001869)) +SubClassOf(obo:CL_0002014 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002065)) +SubClassOf(obo:CL_0002014 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002979)) SubClassOf(obo:CL_0002014 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002012)) +SubClassOf(obo:CL_0002014 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000002981)) # Class: obo:CL_0002015 (Kit-negative, Ly-76 high polychromatophilic erythroblast) @@ -15479,7 +17576,11 @@ AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0002015 "late basophilic and AnnotationAssertion(rdfs:label obo:CL_0002015 "Kit-negative, Ly-76 high polychromatophilic erythroblast") EquivalentClasses(obo:CL_0002015 ObjectIntersectionOf(obo:CL_0000550 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001869) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002065) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002979) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000002981))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002015 obo:CL_0000550) +SubClassOf(obo:CL_0002015 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001869)) +SubClassOf(obo:CL_0002015 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002065)) +SubClassOf(obo:CL_0002015 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002979)) SubClassOf(obo:CL_0002015 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002014)) +SubClassOf(obo:CL_0002015 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000002981)) # Class: obo:CL_0002016 (CD71-low, GlyA-positive polychromatic erythroblast) @@ -15490,7 +17591,9 @@ AnnotationAssertion(rdfs:comment obo:CL_0002016 "Cell surface markers are associ AnnotationAssertion(rdfs:label obo:CL_0002016 "CD71-low, GlyA-positive polychromatic erythroblast") EquivalentClasses(obo:CL_0002016 ObjectIntersectionOf(obo:CL_0000550 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001460) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001945))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002016 obo:CL_0000550) +SubClassOf(obo:CL_0002016 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001460)) SubClassOf(obo:CL_0002016 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002013)) +SubClassOf(obo:CL_0002016 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001945)) # Class: obo:CL_0002017 (Kit-negative, Ly-76 high orthochromatophilic erythroblasts) @@ -15501,7 +17604,12 @@ AnnotationAssertion(rdfs:comment obo:CL_0002017 "Cell surface markers associated AnnotationAssertion(rdfs:label obo:CL_0002017 "Kit-negative, Ly-76 high orthochromatophilic erythroblasts") EquivalentClasses(obo:CL_0002017 ObjectIntersectionOf(obo:CL_0000552 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001869) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002065) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002979) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000002981) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001945))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002017 obo:CL_0000552) +SubClassOf(obo:CL_0002017 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001869)) +SubClassOf(obo:CL_0002017 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002065)) +SubClassOf(obo:CL_0002017 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002979)) SubClassOf(obo:CL_0002017 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002015)) +SubClassOf(obo:CL_0002017 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000002981)) +SubClassOf(obo:CL_0002017 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001945)) # Class: obo:CL_0002018 (CD71-negative, GlyA-positive orthochromatic erythroblast) @@ -15512,6 +17620,8 @@ AnnotationAssertion(rdfs:comment obo:CL_0002018 "Markers associated with human c AnnotationAssertion(rdfs:label obo:CL_0002018 "CD71-negative, GlyA-positive orthochromatic erythroblast") EquivalentClasses(obo:CL_0002018 ObjectIntersectionOf(obo:CL_0000552 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001945) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001460))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002018 obo:CL_0000552) +SubClassOf(obo:CL_0002018 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001945)) +SubClassOf(obo:CL_0002018 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001460)) SubClassOf(obo:CL_0002018 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002016)) # Class: obo:CL_0002019 (Ly-76 high reticulocyte) @@ -15524,6 +17634,7 @@ AnnotationAssertion(rdfs:label obo:CL_0002019 "Ly-76 high reticulocyte") EquivalentClasses(obo:CL_0002019 ObjectIntersectionOf(obo:CL_0002422 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000002981))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002019 obo:CL_0002422) SubClassOf(obo:CL_0002019 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002017)) +SubClassOf(obo:CL_0002019 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000002981)) # Class: obo:CL_0002020 (GlyA-positive reticulocytes) @@ -15534,6 +17645,7 @@ AnnotationAssertion(rdfs:comment obo:CL_0002020 "Markers is associated with huma AnnotationAssertion(rdfs:label obo:CL_0002020 "GlyA-positive reticulocytes") EquivalentClasses(obo:CL_0002020 ObjectIntersectionOf(obo:CL_0002422 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001460))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002020 obo:CL_0002422) +SubClassOf(obo:CL_0002020 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001460)) SubClassOf(obo:CL_0002020 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002018)) # Class: obo:CL_0002021 (GlyA-positive erythrocyte) @@ -15545,6 +17657,7 @@ AnnotationAssertion(rdfs:comment obo:CL_0002021 "Marker is associated with human AnnotationAssertion(rdfs:label obo:CL_0002021 "GlyA-positive erythrocyte") EquivalentClasses(obo:CL_0002021 ObjectIntersectionOf(obo:CL_0000595 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001460))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002021 obo:CL_0000595) +SubClassOf(obo:CL_0002021 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001460)) SubClassOf(obo:CL_0002021 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002020)) # Class: obo:CL_0002022 (Ly-76 high positive erythrocyte) @@ -15557,6 +17670,7 @@ AnnotationAssertion(rdfs:label obo:CL_0002022 "Ly-76 high positive erythrocyte") EquivalentClasses(obo:CL_0002022 ObjectIntersectionOf(obo:CL_0000595 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000002981))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002022 obo:CL_0000595) SubClassOf(obo:CL_0002022 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002019)) +SubClassOf(obo:CL_0002022 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000002981)) # Class: obo:CL_0002023 (CD34-positive, CD41-positive, CD42-positive megakaryocyte progenitor cell) @@ -15567,6 +17681,9 @@ AnnotationAssertion(rdfs:comment obo:CL_0002023 "Markers are associated with hum AnnotationAssertion(rdfs:label obo:CL_0002023 "CD34-positive, CD41-positive, CD42-positive megakaryocyte progenitor cell") EquivalentClasses(obo:CL_0002023 ObjectIntersectionOf(obo:CL_0000553 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001907) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000009127))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002023 obo:CL_0000553) +SubClassOf(obo:CL_0002023 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003)) +SubClassOf(obo:CL_0002023 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001907)) +SubClassOf(obo:CL_0002023 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000009127)) SubClassOf(obo:CL_0002023 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002025)) # Class: obo:CL_0002024 (Kit-positive megakaryocyte progenitor cell) @@ -15578,7 +17695,14 @@ AnnotationAssertion(rdfs:comment obo:CL_0002024 "Markers are associated with mou AnnotationAssertion(rdfs:label obo:CL_0002024 "Kit-positive megakaryocyte progenitor cell") EquivalentClasses(obo:CL_0002024 ObjectIntersectionOf(obo:CL_0000553 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001833) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001869) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002979) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002065) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000005178) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001479) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001483))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002024 obo:CL_0000553) +SubClassOf(obo:CL_0002024 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001833)) +SubClassOf(obo:CL_0002024 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001869)) +SubClassOf(obo:CL_0002024 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002979)) +SubClassOf(obo:CL_0002024 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002065)) +SubClassOf(obo:CL_0002024 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000005178)) SubClassOf(obo:CL_0002024 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002006)) +SubClassOf(obo:CL_0002024 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001479)) +SubClassOf(obo:CL_0002024 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001483)) # Class: obo:CL_0002025 (CD34-positive, CD41-positive, CD42-negative megakaryocyte progenitor cell) @@ -15589,6 +17713,9 @@ AnnotationAssertion(rdfs:comment obo:CL_0002025 "Markers are commonly associated AnnotationAssertion(rdfs:label obo:CL_0002025 "CD34-positive, CD41-positive, CD42-negative megakaryocyte progenitor cell") EquivalentClasses(obo:CL_0002025 ObjectIntersectionOf(obo:CL_0000553 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001907) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000009127))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002025 obo:CL_0000553) +SubClassOf(obo:CL_0002025 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001907)) +SubClassOf(obo:CL_0002025 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003)) +SubClassOf(obo:CL_0002025 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000009127)) SubClassOf(obo:CL_0002025 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002005)) # Class: obo:CL_0002026 (CD34-negative, CD41-positive, CD42-positive megakaryocyte cell) @@ -15600,6 +17727,9 @@ AnnotationAssertion(rdfs:comment obo:CL_0002026 "Markers are commonly associated AnnotationAssertion(rdfs:label obo:CL_0002026 "CD34-negative, CD41-positive, CD42-positive megakaryocyte cell") EquivalentClasses(obo:CL_0002026 ObjectIntersectionOf(obo:CL_0000556 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001003) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001907) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000009127))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002026 obo:CL_0000556) +SubClassOf(obo:CL_0002026 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001003)) +SubClassOf(obo:CL_0002026 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001907)) +SubClassOf(obo:CL_0002026 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000009127)) SubClassOf(obo:CL_0002026 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002023)) # Class: obo:CL_0002027 (CD9-positive, CD41-positive megakaryocyte cell) @@ -15611,6 +17741,8 @@ AnnotationAssertion(rdfs:comment obo:CL_0002027 "Markers are commonly associated AnnotationAssertion(rdfs:label obo:CL_0002027 "CD9-positive, CD41-positive megakaryocyte cell") EquivalentClasses(obo:CL_0002027 ObjectIntersectionOf(obo:CL_0000556 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000005178) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000009127))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002027 obo:CL_0000556) +SubClassOf(obo:CL_0002027 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000005178)) +SubClassOf(obo:CL_0002027 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000009127)) SubClassOf(obo:CL_0002027 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002024)) # Class: obo:CL_0002028 (basophil mast progenitor cell) @@ -15623,8 +17755,17 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0002028 cl:cellxgene_subset) AnnotationAssertion(rdfs:comment obo:CL_0002028 "There may be an intermediate cell type. These cells also CD13-positive, CD16-positive, CD32-positive, and integrin beta 7-positive. Transcription factors: GATA1-positive, MCP-1-positive, mitf-positive, PU.1-positive, and CEBP/a-low.") AnnotationAssertion(rdfs:label obo:CL_0002028 "basophil mast progenitor cell") EquivalentClasses(obo:CL_0002028 ObjectIntersectionOf(obo:CL_0000839 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000005307) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000007857) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000007858) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000007431) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000016401) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001867) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030221) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0060374))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002028 obo:CL_0000839) +SubClassOf(obo:CL_0002028 obo:CL_0000763) +SubClassOf(obo:CL_0002028 obo:CL_0002191) +SubClassOf(obo:CL_0002028 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000005307)) +SubClassOf(obo:CL_0002028 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000007857)) +SubClassOf(obo:CL_0002028 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000007858)) +SubClassOf(obo:CL_0002028 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000007431)) +SubClassOf(obo:CL_0002028 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000016401)) +SubClassOf(obo:CL_0002028 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001867)) SubClassOf(obo:CL_0002028 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000557)) +SubClassOf(obo:CL_0002028 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030221)) +SubClassOf(obo:CL_0002028 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0060374)) # Class: obo:CL_0002029 (Fc-epsilon RIalpha-low mast cell progenitor) @@ -15634,6 +17775,9 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002029 "2010-04-27T01:22:19Z" AnnotationAssertion(rdfs:label obo:CL_0002029 "Fc-epsilon RIalpha-low mast cell progenitor") EquivalentClasses(obo:CL_0002029 ObjectIntersectionOf(obo:CL_0000831 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002979) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001006) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002065) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000009143) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000007431))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002029 obo:CL_0000831) +SubClassOf(obo:CL_0002029 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001006)) +SubClassOf(obo:CL_0002029 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002065)) +SubClassOf(obo:CL_0002029 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000009143)) SubClassOf(obo:CL_0002029 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002044)) # Class: obo:CL_0002030 (Fc-epsilon RIalpha-high basophil progenitor cell) @@ -15645,6 +17789,8 @@ AnnotationAssertion(rdfs:comment obo:CL_0002030 "Markers are associated with mou AnnotationAssertion(rdfs:label obo:CL_0002030 "Fc-epsilon RIalpha-high basophil progenitor cell") EquivalentClasses(obo:CL_0002030 ObjectIntersectionOf(obo:CL_0000613 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002065) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002979) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000007431))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002030 obo:CL_0000613) +SubClassOf(obo:CL_0002030 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002979)) +SubClassOf(obo:CL_0002030 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003)) SubClassOf(obo:CL_0002030 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002044)) # Class: obo:CL_0002031 (hematopoietic lineage restricted progenitor cell) @@ -15655,8 +17801,9 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002031 "2010-01-06T03:43:20Z" AnnotationAssertion(oboInOwl:inSubset obo:CL_0002031 cl:blood_and_immune_upper_slim) AnnotationAssertion(rdfs:label obo:CL_0002031 "hematopoietic lineage restricted progenitor cell") EquivalentClasses(obo:CL_0002031 ObjectIntersectionOf(obo:CL_0000988 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001400))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002031 obo:CL_0000988) +SubClassOf(obo:CL_0002031 obo:BFO_0000002) SubClassOf(obo:CL_0002031 obo:CL_0008001) +SubClassOf(obo:CL_0002031 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001400)) SubClassOf(obo:CL_0002031 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002032)) DisjointClasses(obo:CL_0002031 obo:CL_0002032) @@ -15669,8 +17816,9 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0002032 cl:blood_and_immune_upper_s AnnotationAssertion(rdfs:comment obo:CL_0002032 "This cell type is intended to be compatible with any vertebrate hematopoietic oligopotent progenitor cell. For mammalian hematopoietic oligopotent progenitor cells known to be lineage-negative, please use the term 'hematopoietic oligopotent progenitor cell' (CL_0001060).") AnnotationAssertion(rdfs:label obo:CL_0002032 "hematopoietic oligopotent progenitor cell") EquivalentClasses(obo:CL_0002032 ObjectIntersectionOf(obo:CL_0000988 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001401))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002032 obo:CL_0000988) +SubClassOf(obo:CL_0002032 obo:BFO_0000002) SubClassOf(obo:CL_0002032 obo:CL_0008001) +SubClassOf(obo:CL_0002032 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001401)) SubClassOf(obo:CL_0002032 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000837)) # Class: obo:CL_0002033 (short term hematopoietic stem cell) @@ -15684,6 +17832,8 @@ AnnotationAssertion(rdfs:comment obo:CL_0002033 "Markers are associated with mou AnnotationAssertion(rdfs:label obo:CL_0002033 "short term hematopoietic stem cell") EquivalentClasses(obo:CL_0002033 ObjectIntersectionOf(obo:CL_0001008 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002001) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001833))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002033 obo:CL_0001008) +SubClassOf(obo:CL_0002033 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002001)) +SubClassOf(obo:CL_0002033 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003)) SubClassOf(obo:CL_0002033 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002034)) # Class: obo:CL_0002034 (long term hematopoietic stem cell) @@ -15697,6 +17847,9 @@ AnnotationAssertion(rdfs:comment obo:CL_0002034 "Markers are associated with mou AnnotationAssertion(rdfs:label obo:CL_0002034 "long term hematopoietic stem cell") EquivalentClasses(obo:CL_0002034 ObjectIntersectionOf(obo:CL_0001008 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001003) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002001) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001833) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001843))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002034 obo:CL_0001008) +SubClassOf(obo:CL_0002034 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001003)) +SubClassOf(obo:CL_0002034 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002001)) +SubClassOf(obo:CL_0002034 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001843)) # Class: obo:CL_0002035 (Slamf1-negative multipotent progenitor cell) @@ -15707,6 +17860,10 @@ AnnotationAssertion(rdfs:comment obo:CL_0002035 "Markers are associated with mou AnnotationAssertion(rdfs:label obo:CL_0002035 "Slamf1-negative multipotent progenitor cell") EquivalentClasses(obo:CL_0002035 ObjectIntersectionOf(obo:CL_0000837 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001833) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002001) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002065) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002979))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002035 obo:CL_0000837) +SubClassOf(obo:CL_0002035 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001833)) +SubClassOf(obo:CL_0002035 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002001)) +SubClassOf(obo:CL_0002035 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002065)) +SubClassOf(obo:CL_0002035 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002979)) SubClassOf(obo:CL_0002035 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002036)) # Class: obo:CL_0002036 (Slamf1-positive multipotent progenitor cell) @@ -15719,6 +17876,9 @@ AnnotationAssertion(rdfs:comment obo:CL_0002036 "Markers are associated with mou AnnotationAssertion(rdfs:label obo:CL_0002036 "Slamf1-positive multipotent progenitor cell") EquivalentClasses(obo:CL_0002036 ObjectIntersectionOf(obo:CL_0000837 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001833) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002065) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002979))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002036 obo:CL_0000837) +SubClassOf(obo:CL_0002036 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001833)) +SubClassOf(obo:CL_0002036 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002065)) +SubClassOf(obo:CL_0002036 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002979)) SubClassOf(obo:CL_0002036 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002033)) DisjointClasses(obo:CL_0002036 obo:CL_0002043) @@ -15731,6 +17891,9 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:16048545") oboInOwl:hasE AnnotationAssertion(rdfs:label obo:CL_0002037 "CD2-positive, CD5-positive, CD44-positive alpha-beta intraepithelial T cell") EquivalentClasses(obo:CL_0002037 ObjectIntersectionOf(obo:CL_0000793 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001083) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001307) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001839))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002037 obo:CL_0000793) +SubClassOf(obo:CL_0002037 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001083)) +SubClassOf(obo:CL_0002037 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001307)) +SubClassOf(obo:CL_0002037 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001839)) # Class: obo:CL_0002038 (T follicular helper cell) @@ -15751,7 +17914,13 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0002038 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0002038 "T follicular helper cell") EquivalentClasses(obo:CL_0002038 ObjectIntersectionOf(obo:CL_0000492 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000003450) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001203) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001209) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001860) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001919) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045830) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0051024))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002038 obo:CL_0000492) -SubClassOf(obo:CL_0002038 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000896)) +SubClassOf(obo:CL_0002038 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000003450)) +SubClassOf(obo:CL_0002038 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001203)) +SubClassOf(obo:CL_0002038 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001209)) +SubClassOf(obo:CL_0002038 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001860)) +SubClassOf(obo:CL_0002038 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001919)) +SubClassOf(obo:CL_0002038 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045830)) +SubClassOf(obo:CL_0002038 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0051024)) # Class: obo:CL_0002039 (immature NK T cell stage I) @@ -15761,7 +17930,11 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002039 "2009-10-29T04:09:16Z" AnnotationAssertion(rdfs:label obo:CL_0002039 "immature NK T cell stage I") EquivalentClasses(obo:CL_0002039 ObjectIntersectionOf(obo:CL_0000914 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001307) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001874) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001932) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001004) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000025402))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002039 obo:CL_0000914) -SubClassOf(obo:CL_0002039 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000809)) +SubClassOf(obo:CL_0002039 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001307)) +SubClassOf(obo:CL_0002039 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001874)) +SubClassOf(obo:CL_0002039 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001932)) +SubClassOf(obo:CL_0002039 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001004)) +SubClassOf(obo:CL_0002039 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000025402)) # Class: obo:CL_0002040 (immature NK T cell stage II) @@ -15773,7 +17946,10 @@ AnnotationAssertion(rdfs:comment obo:CL_0002040 "NKT.44-NK1.1-.Th was assigned a AnnotationAssertion(rdfs:label obo:CL_0002040 "immature NK T cell stage II") EquivalentClasses(obo:CL_0002040 ObjectIntersectionOf(obo:CL_0000914 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001307) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001874) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001932))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002040 obo:CL_0000914) +SubClassOf(obo:CL_0002040 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001307)) +SubClassOf(obo:CL_0002040 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001874)) SubClassOf(obo:CL_0002040 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002039)) +SubClassOf(obo:CL_0002040 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001932)) # Class: obo:CL_0002041 (immature NK T cell stage III) @@ -15784,7 +17960,11 @@ AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0002041 "NKT.44+.NK1.1-.Th") AnnotationAssertion(rdfs:label obo:CL_0002041 "immature NK T cell stage III") EquivalentClasses(obo:CL_0002041 ObjectIntersectionOf(obo:CL_0000914 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001874) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001307) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001008) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001932))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002041 obo:CL_0000914) +SubClassOf(obo:CL_0002041 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001874)) +SubClassOf(obo:CL_0002041 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001307)) SubClassOf(obo:CL_0002041 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002040)) +SubClassOf(obo:CL_0002041 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001008)) +SubClassOf(obo:CL_0002041 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001932)) # Class: obo:CL_0002042 (immature NK T cell stage IV) @@ -15797,7 +17977,11 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0002042 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0002042 "immature NK T cell stage IV") EquivalentClasses(obo:CL_0002042 ObjectIntersectionOf(obo:CL_0000914 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001874) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001307) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001008) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001932))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002042 obo:CL_0000914) +SubClassOf(obo:CL_0002042 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001874)) +SubClassOf(obo:CL_0002042 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001307)) SubClassOf(obo:CL_0002042 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002041)) +SubClassOf(obo:CL_0002042 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001008)) +SubClassOf(obo:CL_0002042 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001932)) # Class: obo:CL_0002043 (CD34-positive, CD38-negative multipotent progenitor cell) @@ -15808,6 +17992,9 @@ AnnotationAssertion(rdfs:comment obo:CL_0002043 "Cell markers are associated wit AnnotationAssertion(rdfs:label obo:CL_0002043 "CD34-positive, CD38-negative multipotent progenitor cell") EquivalentClasses(obo:CL_0002043 ObjectIntersectionOf(obo:CL_0000837 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001015) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001408) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001843) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002043 obo:CL_0000837) +SubClassOf(obo:CL_0002043 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001015)) +SubClassOf(obo:CL_0002043 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001408)) +SubClassOf(obo:CL_0002043 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001843)) SubClassOf(obo:CL_0002043 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0001024)) # Class: obo:CL_0002044 (Kit-positive, integrin beta7-high basophil mast progenitor cell) @@ -15819,6 +18006,11 @@ AnnotationAssertion(rdfs:comment obo:CL_0002044 "Markers are associated with mou AnnotationAssertion(rdfs:label obo:CL_0002044 "Kit-positive, integrin beta7-high basophil mast progenitor cell") EquivalentClasses(obo:CL_0002044 ObjectIntersectionOf(obo:CL_0002028 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002065) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002979) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001479) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001483) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000009143))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002044 obo:CL_0002028) +SubClassOf(obo:CL_0002044 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002065)) +SubClassOf(obo:CL_0002044 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002979)) +SubClassOf(obo:CL_0002044 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001479)) +SubClassOf(obo:CL_0002044 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001483)) +SubClassOf(obo:CL_0002044 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000009143)) # Class: obo:CL_0002045 (fraction A pre-pro B cell) @@ -15832,6 +18024,13 @@ AnnotationAssertion(rdfs:comment obo:CL_0002045 "Markers associated with mouse c AnnotationAssertion(rdfs:label obo:CL_0002045 "fraction A pre-pro B cell") EquivalentClasses(obo:CL_0002045 ObjectIntersectionOf(obo:CL_0000826 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002039) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002980) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001015) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001879) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002037) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002065) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001932))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002045 obo:CL_0000826) +SubClassOf(obo:CL_0002045 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002039)) +SubClassOf(obo:CL_0002045 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002980)) +SubClassOf(obo:CL_0002045 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001015)) +SubClassOf(obo:CL_0002045 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001879)) +SubClassOf(obo:CL_0002045 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002037)) +SubClassOf(obo:CL_0002045 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002065)) +SubClassOf(obo:CL_0002045 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001932)) # Class: obo:CL_0002046 (early pro-B cell) @@ -15843,6 +18042,15 @@ AnnotationAssertion(rdfs:comment obo:CL_0002046 "Markers are commonly associated AnnotationAssertion(rdfs:label obo:CL_0002046 "early pro-B cell") EquivalentClasses(obo:CL_0002046 ObjectIntersectionOf(obo:CL_0000826 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001338) ObjectSomeValuesFrom(obo:RO_0000056 obo:GO_0071707) ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0035369) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001288) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001898))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002046 obo:CL_0000826) +SubClassOf(obo:CL_0002046 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002)) +SubClassOf(obo:CL_0002046 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289)) +SubClassOf(obo:CL_0002046 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001338)) +SubClassOf(obo:CL_0002046 ObjectSomeValuesFrom(obo:RO_0000056 obo:GO_0071707)) +SubClassOf(obo:CL_0002046 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0035369)) +SubClassOf(obo:CL_0002046 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003)) +SubClassOf(obo:CL_0002046 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001288)) +SubClassOf(obo:CL_0002046 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408)) +SubClassOf(obo:CL_0002046 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001898)) # Class: obo:CL_0002047 (fraction B precursor B cell) @@ -15855,6 +18063,8 @@ AnnotationAssertion(rdfs:comment obo:CL_0002047 "Markers are commonly associated AnnotationAssertion(rdfs:label obo:CL_0002047 "fraction B precursor B cell") EquivalentClasses(obo:CL_0002047 ObjectIntersectionOf(obo:CL_0002400 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002039) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001014) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001932))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002047 obo:CL_0002400) +SubClassOf(obo:CL_0002047 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000002039)) +SubClassOf(obo:CL_0002047 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001014)) SubClassOf(obo:CL_0002047 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002045)) # Class: obo:CL_0002048 (late pro-B cell) @@ -15867,7 +18077,11 @@ AnnotationAssertion(rdfs:comment obo:CL_0002048 "Late pro-B cells are also repor AnnotationAssertion(rdfs:label obo:CL_0002048 "late pro-B cell") EquivalentClasses(obo:CL_0002048 ObjectIntersectionOf(obo:CL_0000817 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001288) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001002))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002048 obo:CL_0000817) +SubClassOf(obo:CL_0002048 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001003)) +SubClassOf(obo:CL_0002048 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001288)) +SubClassOf(obo:CL_0002048 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408)) SubClassOf(obo:CL_0002048 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002046)) +SubClassOf(obo:CL_0002048 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001002)) # Class: obo:CL_0002049 (fraction C precursor B cell) @@ -15878,6 +18092,13 @@ AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0002049 "Fraction C") AnnotationAssertion(rdfs:label obo:CL_0002049 "fraction C precursor B cell") EquivalentClasses(obo:CL_0002049 ObjectIntersectionOf(obo:CL_0002400 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001858) ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001859) ObjectSomeValuesFrom(obo:CL_4030044 obo:GO_0071707) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001014) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001932) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002039) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000003457) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000003460))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002049 obo:CL_0002400) +SubClassOf(obo:CL_0002049 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001858)) +SubClassOf(obo:CL_0002049 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000001859)) +SubClassOf(obo:CL_0002049 ObjectSomeValuesFrom(obo:CL_4030044 obo:GO_0071707)) +SubClassOf(obo:CL_0002049 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001014)) +SubClassOf(obo:CL_0002049 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002039)) +SubClassOf(obo:CL_0002049 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000003457)) +SubClassOf(obo:CL_0002049 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000003460)) SubClassOf(obo:CL_0002049 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002047)) # Class: obo:CL_0002050 (fraction C' precursor B cell) @@ -15890,7 +18111,13 @@ AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0002050 "Fraction C-prime") AnnotationAssertion(rdfs:label obo:CL_0002050 "fraction C' precursor B cell") EquivalentClasses(obo:CL_0002050 ObjectIntersectionOf(obo:CL_0000817 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0035369) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001014) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001380) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001879) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002039) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001932))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002050 obo:CL_0000817) +SubClassOf(obo:CL_0002050 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0035369)) +SubClassOf(obo:CL_0002050 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001014)) +SubClassOf(obo:CL_0002050 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001380)) +SubClassOf(obo:CL_0002050 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001879)) +SubClassOf(obo:CL_0002050 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002039)) SubClassOf(obo:CL_0002050 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002049)) +SubClassOf(obo:CL_0002050 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001932)) # Class: obo:CL_0002051 (CD38-high pre-BCR positive cell) @@ -15902,7 +18129,9 @@ AnnotationAssertion(rdfs:comment obo:CL_0002051 "Markers are associated with hum AnnotationAssertion(rdfs:label obo:CL_0002051 "CD38-high pre-BCR positive cell") EquivalentClasses(obo:CL_0002051 ObjectIntersectionOf(obo:CL_0000952 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001288) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001408))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002051 obo:CL_0000952) +SubClassOf(obo:CL_0002051 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001288)) SubClassOf(obo:CL_0002051 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002048)) +SubClassOf(obo:CL_0002051 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001408)) # Class: obo:CL_0002052 (fraction D precursor B cell) @@ -15914,8 +18143,14 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") oboInOwl:hasExactSy AnnotationAssertion(rdfs:comment obo:CL_0002052 "Fraction D precursor B cells are also reportedly CD24-positive and sIgD-negative.") AnnotationAssertion(rdfs:label obo:CL_0002052 "fraction D precursor B cell") EquivalentClasses(obo:CL_0002052 ObjectIntersectionOf(obo:CL_0000817 ObjectSomeValuesFrom(obo:CL_4030044 obo:GO_0071708) ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0035369) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001002) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001014) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001380) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001932) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002037) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002039) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001879))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002052 obo:CL_0000817) +SubClassOf(obo:CL_0002052 obo:CL_0002400) +SubClassOf(obo:CL_0002052 ObjectSomeValuesFrom(obo:CL_4030044 obo:GO_0071708)) +SubClassOf(obo:CL_0002052 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0035369)) +SubClassOf(obo:CL_0002052 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001014)) +SubClassOf(obo:CL_0002052 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001380)) +SubClassOf(obo:CL_0002052 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002039)) SubClassOf(obo:CL_0002052 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002050)) +SubClassOf(obo:CL_0002052 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001879)) # Class: obo:CL_0002053 (CD22-positive, CD38-low small pre-B cell) @@ -15927,7 +18162,9 @@ AnnotationAssertion(rdfs:comment obo:CL_0002053 "Markers are associated with hum AnnotationAssertion(rdfs:label obo:CL_0002053 "CD22-positive, CD38-low small pre-B cell") EquivalentClasses(obo:CL_0002053 ObjectIntersectionOf(obo:CL_0000954 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001288) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001408))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002053 obo:CL_0000954) +SubClassOf(obo:CL_0002053 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001288)) SubClassOf(obo:CL_0002053 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002051)) +SubClassOf(obo:CL_0002053 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001408)) # Class: obo:CL_0002054 (fraction E immature B cell) @@ -15938,7 +18175,12 @@ AnnotationAssertion(rdfs:comment obo:CL_0002054 "Markers associated with mouse c AnnotationAssertion(rdfs:label obo:CL_0002054 "fraction E immature B cell") EquivalentClasses(obo:CL_0002054 ObjectIntersectionOf(obo:CL_0000816 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001380) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001869) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001002) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001932) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002037) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001879))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002054 obo:CL_0000816) +SubClassOf(obo:CL_0002054 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001380)) +SubClassOf(obo:CL_0002054 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001869)) +SubClassOf(obo:CL_0002054 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001932)) +SubClassOf(obo:CL_0002054 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002037)) SubClassOf(obo:CL_0002054 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002052)) +SubClassOf(obo:CL_0002054 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001879)) # Class: obo:CL_0002055 (CD38-negative immature B cell) @@ -15949,7 +18191,11 @@ AnnotationAssertion(rdfs:comment obo:CL_0002055 "Markers are associated with hum AnnotationAssertion(rdfs:label obo:CL_0002055 "CD38-negative immature B cell") EquivalentClasses(obo:CL_0002055 ObjectIntersectionOf(obo:CL_0000816 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001408) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001288) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001338) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001898))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002055 obo:CL_0000816) +SubClassOf(obo:CL_0002055 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001408)) SubClassOf(obo:CL_0002055 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002053)) +SubClassOf(obo:CL_0002055 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001288)) +SubClassOf(obo:CL_0002055 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001338)) +SubClassOf(obo:CL_0002055 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001898)) # Class: obo:CL_0002056 (fraction F mature B cell) @@ -15958,7 +18204,13 @@ AnnotationAssertion(terms:contributor obo:CL_0002056 ) oboInOwl:hasDbXref obo:CL_0002064 "ZFA:0005739") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002064 "acinar cell of pancreas") AnnotationAssertion(oboInOwl:inSubset obo:CL_0002064 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0002064 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0002064 "pancreatic acinar cell") EquivalentClasses(obo:CL_0002064 ObjectIntersectionOf(obo:CL_0000622 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001263))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002064 obo:CL_0000083) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002064 obo:CL_0000622) +SubClassOf(obo:CL_0002064 obo:CL_1001599) +SubClassOf(obo:CL_0002064 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001263)) SubClassOf(obo:CL_0002064 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0042589)) # Class: obo:CL_0002065 (obo:CL_0002065) @@ -16117,6 +18390,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002067 "2010-09-10T10:48:54Z" AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002067 "FMA:62939") AnnotationAssertion(rdfs:label obo:CL_0002067 "type A enteroendocrine cell") EquivalentClasses(obo:CL_0002067 ObjectIntersectionOf(obo:CL_0000164 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0070091))) +SubClassOf(obo:CL_0002067 obo:CL_0000164) +SubClassOf(obo:CL_0002067 obo:CL_0000170) # Class: obo:CL_0002068 (Purkinje myocyte) @@ -16173,7 +18448,9 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0002071 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0002071 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0002071 "enterocyte of epithelium of large intestine") EquivalentClasses(obo:CL_0002071 ObjectIntersectionOf(obo:CL_0000584 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001278))) +SubClassOf(obo:CL_0002071 obo:CL_0000584) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002071 obo:CL_0002253) +SubClassOf(obo:CL_0002071 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001278)) # Class: obo:CL_0002072 (nodal myocyte) @@ -16208,15 +18485,17 @@ AnnotationAssertion(rdfs:label obo:CL_0002074 "myocardial endocrine cell") SubClassOf(obo:CL_0002074 obo:CL_0000163) SubClassOf(obo:CL_0002074 obo:CL_0002086) -# Class: obo:CL_0002075 (brush cell of trachebronchial tree) +# Class: obo:CL_0002075 (brush cell of tracheobronchial tree) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0517223651") Annotation(oboInOwl:hasDbXref "PMID:15817800") obo:IAO_0000115 obo:CL_0002075 "Infrequent type of columnar epithelial cell. This cell is characterized by the presence of a tuft of blunt, squat microvilli (approximately 120-140/cell) on the cell surface. The microvilli contain filaments that stretch into the underlying cytoplasm. They have a distinctive pear shape with a wide base and a narrow microvillous apex. Function not known.") AnnotationAssertion(terms:contributor obo:CL_0002075 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0002075 "2010-06-29T03:22:46Z") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0002075 "pulmonary brush cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0002075 cl:cellxgene_subset) -AnnotationAssertion(rdfs:label obo:CL_0002075 "brush cell of trachebronchial tree") +AnnotationAssertion(rdfs:label obo:CL_0002075 "brush cell of tracheobronchial tree") EquivalentClasses(obo:CL_0002075 ObjectIntersectionOf(obo:CL_0002204 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0007196))) +SubClassOf(obo:CL_0002075 obo:CL_0002202) +SubClassOf(obo:CL_0002075 obo:CL_0002204) # Class: obo:CL_0002076 (endo-epithelial cell) @@ -16224,7 +18503,9 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:69075") Annotation(oboInO AnnotationAssertion(terms:contributor obo:CL_0002076 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0002076 "2010-06-29T03:38:14Z") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002076 "FMA:69075") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0002076 "ZFA:0009383") AnnotationAssertion(rdfs:label obo:CL_0002076 "endo-epithelial cell") +SubClassOf(obo:CL_0002076 obo:BFO_0000002) SubClassOf(obo:CL_0002076 obo:CL_0000066) SubClassOf(obo:CL_0002076 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000223)) @@ -16234,8 +18515,12 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:69074") Annotation(oboInO AnnotationAssertion(terms:contributor obo:CL_0002077 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0002077 "2010-06-29T03:38:22Z") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002077 "FMA:69074") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0002077 "ZFA:0009385") AnnotationAssertion(rdfs:label obo:CL_0002077 "ecto-epithelial cell") EquivalentClasses(obo:CL_0002077 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000221))) +SubClassOf(obo:CL_0002077 obo:BFO_0000002) +SubClassOf(obo:CL_0002077 obo:CL_0000066) +SubClassOf(obo:CL_0002077 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000221)) # Class: obo:CL_0002078 (meso-epithelial cell) @@ -16243,9 +18528,13 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:69076") Annotation(oboInO AnnotationAssertion(terms:contributor obo:CL_0002078 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0002078 "2010-06-29T03:49:14Z") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002078 "FMA:69076") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0002078 "ZFA:0009388") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002078 "epithelial mesenchymal cell") AnnotationAssertion(rdfs:label obo:CL_0002078 "meso-epithelial cell") EquivalentClasses(obo:CL_0002078 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000222))) +SubClassOf(obo:CL_0002078 obo:BFO_0000002) +SubClassOf(obo:CL_0002078 obo:CL_0000066) +SubClassOf(obo:CL_0002078 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000222)) # Class: obo:CL_0002079 (pancreatic ductal cell) @@ -16254,12 +18543,15 @@ AnnotationAssertion(obo:RO_0002175 obo:CL_0002079 obo:NCBITaxon_9606) AnnotationAssertion(terms:contributor obo:CL_0002079 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0002079 "2010-06-30T08:49:43Z") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002079 "FMA:63099") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0002079 "ZFA:0009380") AnnotationAssertion(oboInOwl:inSubset obo:CL_0002079 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0002079 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0002079 "pancreatic ductal cell") EquivalentClasses(obo:CL_0002079 ObjectIntersectionOf(obo:CL_0000083 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001064) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0015106))) SubClassOf(obo:CL_0002079 obo:CL_0000069) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002079 obo:CL_0000083) +SubClassOf(obo:CL_0002079 obo:CL_1001433) +SubClassOf(obo:CL_0002079 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001064)) +SubClassOf(obo:CL_0002079 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0015106)) # Class: obo:CL_0002080 (pancreatic centro-acinar cell) @@ -16268,12 +18560,15 @@ AnnotationAssertion(obo:RO_0002175 obo:CL_0002080 obo:NCBITaxon_9606) AnnotationAssertion(terms:contributor obo:CL_0002080 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0002080 "2010-06-30T08:49:52Z") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002080 "FMA:62455") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0002080 "ZFA:0005740") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002080 "centroacinar cell of Langerhans") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002080 "pancreatic centroacinar cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0002080 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0002080 "pancreatic centro-acinar cell") EquivalentClasses(obo:CL_0002080 ObjectIntersectionOf(obo:CL_0000083 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001263) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0015106))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002080 obo:CL_0000083) +SubClassOf(obo:CL_0002080 obo:CL_1001433) +SubClassOf(obo:CL_0002080 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001263)) +SubClassOf(obo:CL_0002080 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0015106)) # Class: obo:CL_0002081 (type II cell of carotid body) @@ -16298,6 +18593,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002082 "epiniphrine secreti AnnotationAssertion(rdfs:label obo:CL_0002082 "type II cell of adrenal medulla") EquivalentClasses(obo:CL_0002082 ObjectIntersectionOf(obo:CL_0000336 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001236) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0048242))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002082 obo:CL_0000336) +SubClassOf(obo:CL_0002082 obo:CL_0000454) # Class: obo:CL_0002083 (type I cell of adrenal medulla) @@ -16309,6 +18605,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002083 "noradrenergic chrom AnnotationAssertion(rdfs:label obo:CL_0002083 "type I cell of adrenal medulla") EquivalentClasses(obo:CL_0002083 ObjectIntersectionOf(obo:CL_0000336 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001236) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0048243))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002083 obo:CL_0000336) +SubClassOf(obo:CL_0002083 obo:CL_0000459) # Class: obo:CL_0002084 (Boettcher cell) @@ -16353,6 +18650,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0002087 cl:blood_and_immune_upper_s AnnotationAssertion(rdfs:label obo:CL_0002087 "nongranular leukocyte") EquivalentClasses(obo:CL_0002087 ObjectIntersectionOf(obo:CL_0000738 ObjectSomeValuesFrom(obo:CL_4030045 obo:GO_0030141))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002087 obo:CL_0000738) +SubClassOf(obo:CL_0002087 ObjectSomeValuesFrom(obo:CL_4030045 obo:GO_0030141)) # Class: obo:CL_0002088 (interstitial cell of Cajal) @@ -16370,6 +18668,7 @@ AnnotationAssertion(rdfs:comment obo:CL_0002088 "Some argue this cell type is of AnnotationAssertion(rdfs:label obo:CL_0002088 "interstitial cell of Cajal") EquivalentClasses(obo:CL_0002088 ObjectIntersectionOf(obo:CL_0000710 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0043134))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002088 obo:CL_0000710) +SubClassOf(obo:CL_0002088 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0043134)) # Class: obo:CL_0002089 (group 2 innate lymphoid cell, mouse) @@ -16379,6 +18678,23 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002089 "2010-08-12T02:22:19Z" AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0002089 "nuocyte") AnnotationAssertion(rdfs:label obo:CL_0002089 "group 2 innate lymphoid cell, mouse") EquivalentClasses(obo:CL_0002089 ObjectIntersectionOf(obo:CL_0001069 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001008) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001024) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001326) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001893) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001927) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000007431) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001860) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001869) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000008982) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000008994) ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_10090) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002830) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032616))) +SubClassOf(obo:CL_0002089 obo:CL_0001069) +SubClassOf(obo:CL_0002089 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004)) +SubClassOf(obo:CL_0002089 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001008)) +SubClassOf(obo:CL_0002089 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001012)) +SubClassOf(obo:CL_0002089 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001024)) +SubClassOf(obo:CL_0002089 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084)) +SubClassOf(obo:CL_0002089 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001326)) +SubClassOf(obo:CL_0002089 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001893)) +SubClassOf(obo:CL_0002089 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001927)) +SubClassOf(obo:CL_0002089 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000007431)) +SubClassOf(obo:CL_0002089 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001860)) +SubClassOf(obo:CL_0002089 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001869)) +SubClassOf(obo:CL_0002089 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000008982)) +SubClassOf(obo:CL_0002089 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000008994)) +SubClassOf(obo:CL_0002089 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_10090)) +SubClassOf(obo:CL_0002089 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002830)) +SubClassOf(obo:CL_0002089 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032616)) # Class: obo:CL_0002090 (polar body) @@ -16420,6 +18736,7 @@ AnnotationAssertion(rdfs:comment obo:CL_0002092 "MH consider whether bone marrow AnnotationAssertion(rdfs:label obo:CL_0002092 "bone marrow cell") EquivalentClasses(obo:CL_0002092 ObjectIntersectionOf(obo:CL_0001035 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002371))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002092 obo:CL_0001035) +SubClassOf(obo:CL_0002092 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002371)) # Class: obo:CL_0002093 (secondary polar body) @@ -16467,6 +18784,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002096 "FMA:223275") AnnotationAssertion(rdfs:label obo:CL_0002096 "internodal tract myocyte") EquivalentClasses(obo:CL_0002096 ObjectIntersectionOf(obo:CL_0000187 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0009966))) SubClassOf(obo:CL_0002096 obo:CL_0002086) +SubClassOf(obo:CL_0002096 obo:CL_0008009) +SubClassOf(obo:CL_0002096 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0009966)) # Class: obo:CL_0002097 (cortical cell of adrenal gland) @@ -16479,9 +18798,9 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002097 "adrenocortical cell AnnotationAssertion(oboInOwl:inSubset obo:CL_0002097 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0002097 "cortical cell of adrenal gland") EquivalentClasses(obo:CL_0002097 ObjectIntersectionOf(obo:CL_0002078 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001235))) -SubClassOf(obo:CL_0002097 obo:CL_0000150) SubClassOf(obo:CL_0002097 obo:CL_0000174) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002097 obo:CL_0002078) +SubClassOf(obo:CL_0002097 obo:CL_1001601) # Class: obo:CL_0002098 (regular cardiac myocyte) @@ -16505,6 +18824,7 @@ AnnotationAssertion(rdfs:label obo:CL_0002099 "type I cell of adrenal cortex") EquivalentClasses(obo:CL_0002099 ObjectIntersectionOf(obo:CL_0002097 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002053))) SubClassOf(obo:CL_0002099 obo:CL_0000456) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002099 obo:CL_0002097) +SubClassOf(obo:CL_0002099 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002053)) # Class: obo:CL_0002100 (regular interventricular cardiac myocyte) @@ -16528,6 +18848,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002101 "CD38-positive naive AnnotationAssertion(rdfs:label obo:CL_0002101 "CD38-positive naive B cell") EquivalentClasses(obo:CL_0002101 ObjectIntersectionOf(obo:CL_0000788 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002101 obo:CL_0000788) +SubClassOf(obo:CL_0002101 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408)) # Class: obo:CL_0002102 (CD38-negative naive B cell) @@ -16542,6 +18863,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002102 "CD38-negative naive AnnotationAssertion(rdfs:label obo:CL_0002102 "CD38-negative naive B cell") EquivalentClasses(obo:CL_0002102 ObjectIntersectionOf(obo:CL_0000788 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001408))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002102 obo:CL_0000788) +SubClassOf(obo:CL_0002102 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001408)) # Class: obo:CL_0002103 (IgG-positive double negative memory B cell) @@ -16564,6 +18886,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002103 "IgG-positive double AnnotationAssertion(rdfs:label obo:CL_0002103 "IgG-positive double negative memory B cell") EquivalentClasses(obo:CL_0002103 ObjectIntersectionOf(obo:CL_0000981 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071735))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002103 obo:CL_0000981) +SubClassOf(obo:CL_0002103 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071735)) # Class: obo:CL_0002104 (IgG-negative double negative memory B cell) @@ -16586,6 +18909,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002104 "IgG-negative double AnnotationAssertion(rdfs:label obo:CL_0002104 "IgG-negative double negative memory B cell") EquivalentClasses(obo:CL_0002104 ObjectIntersectionOf(obo:CL_0000981 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0071735))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002104 obo:CL_0000981) +SubClassOf(obo:CL_0002104 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0071735)) # Class: obo:CL_0002105 (CD38-positive IgG memory B cell) @@ -16600,6 +18924,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002105 "CD38-positive IgG m AnnotationAssertion(rdfs:label obo:CL_0002105 "CD38-positive IgG memory B cell") EquivalentClasses(obo:CL_0002105 ObjectIntersectionOf(obo:CL_0000979 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002105 obo:CL_0000979) +SubClassOf(obo:CL_0002105 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408)) # Class: obo:CL_0002106 (IgD-positive CD38-positive IgG memory B cell) @@ -16607,12 +18932,14 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:dsd") Annotation(oboInOwl AnnotationAssertion(rdfs:label obo:CL_0002106 "IgD-positive CD38-positive IgG memory B cell") EquivalentClasses(obo:CL_0002106 ObjectIntersectionOf(obo:CL_0002105 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071738))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002106 obo:CL_0002105) +SubClassOf(obo:CL_0002106 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0071738)) # Class: obo:CL_0002107 (IgD-negative CD38-positive IgG memory B cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:dsd") Annotation(oboInOwl:hasDbXref "GOC:rhs") Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:20123131") obo:IAO_0000115 obo:CL_0002107 "An IgD-negative CD38-positive IgG memory B cell is a CD38-positive IgG-positive that has class switched and lacks expression of IgD on the cell surface with the phenotype IgD-negative, CD38-positive, and IgG-positive.") AnnotationAssertion(rdfs:label obo:CL_0002107 "IgD-negative CD38-positive IgG memory B cell") EquivalentClasses(obo:CL_0002107 ObjectIntersectionOf(obo:CL_0002105 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0071738))) +SubClassOf(obo:CL_0002107 obo:CL_0001053) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002107 obo:CL_0002105) # Class: obo:CL_0002108 (CD38-negative IgG memory B cell) @@ -16621,6 +18948,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:dsd") Annotation(oboInOwl AnnotationAssertion(rdfs:label obo:CL_0002108 "CD38-negative IgG memory B cell") EquivalentClasses(obo:CL_0002108 ObjectIntersectionOf(obo:CL_0000979 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0071738) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001408))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002108 obo:CL_0000979) +SubClassOf(obo:CL_0002108 obo:CL_0001053) +SubClassOf(obo:CL_0002108 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001408)) # Class: obo:CL_0002109 (B220-positive CD38-positive naive B cell) @@ -16639,13 +18968,15 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002109 "CD38+B220+ naive B- AnnotationAssertion(rdfs:label obo:CL_0002109 "B220-positive CD38-positive naive B cell") EquivalentClasses(obo:CL_0002109 ObjectIntersectionOf(obo:CL_0002101 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001014))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002109 obo:CL_0002101) +SubClassOf(obo:CL_0002109 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001014)) # Class: obo:CL_0002110 (B220-low CD38-positive naive B cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:dsd") Annotation(oboInOwl:hasDbXref "GOC:rhs") Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:20123131") obo:IAO_0000115 obo:CL_0002110 "A B220-low CD38-positive naive B cell is a CD38-positive naive B cell that has the phenotype B220-low, CD38-positive, surface IgD-positive, surface IgM-positive, and CD27-negative, that has not yet been activated by antigen in the periphery.") AnnotationAssertion(rdfs:label obo:CL_0002110 "B220-low CD38-positive naive B cell") EquivalentClasses(obo:CL_0002110 ObjectIntersectionOf(obo:CL_0002101 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001014))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002110 obo:CL_0002101) +SubClassOf(obo:CL_0002110 obo:CL_0002109) +SubClassOf(obo:CL_0002110 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001014)) # Class: obo:CL_0002111 (CD38-negative unswitched memory B cell) @@ -16660,6 +18991,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002111 "CD38-negative unswi AnnotationAssertion(rdfs:label obo:CL_0002111 "CD38-negative unswitched memory B cell") EquivalentClasses(obo:CL_0002111 ObjectIntersectionOf(obo:CL_0000970 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001408))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002111 obo:CL_0000970) +SubClassOf(obo:CL_0002111 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001408)) # Class: obo:CL_0002112 (B220-positive CD38-negative unswitched memory B cell) @@ -16667,13 +18999,15 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:dsd") Annotation(oboInOwl AnnotationAssertion(rdfs:label obo:CL_0002112 "B220-positive CD38-negative unswitched memory B cell") EquivalentClasses(obo:CL_0002112 ObjectIntersectionOf(obo:CL_0002111 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001014))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002112 obo:CL_0002111) +SubClassOf(obo:CL_0002112 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001014)) # Class: obo:CL_0002113 (B220-low CD38-negative unswitched memory B cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:dsd") Annotation(oboInOwl:hasDbXref "GOC:rhs") Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:20123131") obo:IAO_0000115 obo:CL_0002113 "A B220-low CD38-negative unswitched memory B cell is a CD38-negative unswitched memory B cell that has the phenotype B220-low, CD38-negative, IgD-positive, CD138-negative, and IgG-negative.") AnnotationAssertion(rdfs:label obo:CL_0002113 "B220-low CD38-negative unswitched memory B cell") EquivalentClasses(obo:CL_0002113 ObjectIntersectionOf(obo:CL_0002111 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001014))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002113 obo:CL_0002111) +SubClassOf(obo:CL_0002113 obo:CL_0002112) +SubClassOf(obo:CL_0002113 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001014)) # Class: obo:CL_0002114 (CD38-positive unswitched memory B cell) @@ -16688,6 +19022,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002114 "CD38-positive unswi AnnotationAssertion(rdfs:label obo:CL_0002114 "CD38-positive unswitched memory B cell") EquivalentClasses(obo:CL_0002114 ObjectIntersectionOf(obo:CL_0000970 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002114 obo:CL_0000970) +SubClassOf(obo:CL_0002114 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408)) # Class: obo:CL_0002115 (B220-positive CD38-positive unswitched memory B cell) @@ -16695,13 +19030,15 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:dsd") Annotation(oboInOwl AnnotationAssertion(rdfs:label obo:CL_0002115 "B220-positive CD38-positive unswitched memory B cell") EquivalentClasses(obo:CL_0002115 ObjectIntersectionOf(obo:CL_0002114 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001014))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002115 obo:CL_0002114) +SubClassOf(obo:CL_0002115 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001014)) # Class: obo:CL_0002116 (B220-low CD38-positive unswitched memory B cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:dsd") Annotation(oboInOwl:hasDbXref "GOC:rhs") Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:20123131") obo:IAO_0000115 obo:CL_0002116 "A B220-low CD38-positive unswitched memory B cell is a CD38-positive unswitched memory B cell that has the phenotype B220-low, CD38-positive, IgD-positive, CD138-negative, and IgG-negative.") AnnotationAssertion(rdfs:label obo:CL_0002116 "B220-low CD38-positive unswitched memory B cell") EquivalentClasses(obo:CL_0002116 ObjectIntersectionOf(obo:CL_0002114 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001014))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002116 obo:CL_0002114) +SubClassOf(obo:CL_0002116 obo:CL_0002115) +SubClassOf(obo:CL_0002116 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001014)) # Class: obo:CL_0002117 (IgG-negative class switched memory B cell) @@ -16717,6 +19054,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0002117 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0002117 "IgG-negative class switched memory B cell") EquivalentClasses(obo:CL_0002117 ObjectIntersectionOf(obo:CL_0000972 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0071735))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002117 obo:CL_0000972) +SubClassOf(obo:CL_0002117 ObjectSomeValuesFrom(obo:CL_4030046 obo:GO_0071735)) # Class: obo:CL_0002118 (CD38-negative IgG-negative class switched memory B cell) @@ -16724,6 +19062,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:dsd") Annotation(oboInOwl AnnotationAssertion(rdfs:label obo:CL_0002118 "CD38-negative IgG-negative class switched memory B cell") EquivalentClasses(obo:CL_0002118 ObjectIntersectionOf(obo:CL_0002117 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001408))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002118 obo:CL_0002117) +SubClassOf(obo:CL_0002118 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001408)) # Class: obo:CL_0002119 (CD38-positive IgG-negative class switched memory B cell) @@ -16731,6 +19070,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:dsd") Annotation(oboInOwl AnnotationAssertion(rdfs:label obo:CL_0002119 "CD38-positive IgG-negative class switched memory B cell") EquivalentClasses(obo:CL_0002119 ObjectIntersectionOf(obo:CL_0002117 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002119 obo:CL_0002117) +SubClassOf(obo:CL_0002119 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001408)) # Class: obo:CL_0002120 (CD24-positive CD38-negative IgG-negative class switched memory B cell) @@ -16738,6 +19078,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:dsd") Annotation(oboInOwl AnnotationAssertion(rdfs:label obo:CL_0002120 "CD24-positive CD38-negative IgG-negative class switched memory B cell") EquivalentClasses(obo:CL_0002120 ObjectIntersectionOf(obo:CL_0002118 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001932))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002120 obo:CL_0002118) +SubClassOf(obo:CL_0002120 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001932)) # Class: obo:CL_0002121 (CD24-negative CD38-negative IgG-negative class switched memory B cell) @@ -16745,6 +19086,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:dsd") Annotation(oboInOwl AnnotationAssertion(rdfs:label obo:CL_0002121 "CD24-negative CD38-negative IgG-negative class switched memory B cell") EquivalentClasses(obo:CL_0002121 ObjectIntersectionOf(obo:CL_0002118 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001932))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002121 obo:CL_0002118) +SubClassOf(obo:CL_0002121 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001932)) # Class: obo:CL_0002122 (B220-positive CD38-positive IgG-negative class switched memory B cell) @@ -16752,13 +19094,15 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:dsd") Annotation(oboInOwl AnnotationAssertion(rdfs:label obo:CL_0002122 "B220-positive CD38-positive IgG-negative class switched memory B cell") EquivalentClasses(obo:CL_0002122 ObjectIntersectionOf(obo:CL_0002119 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001014))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002122 obo:CL_0002119) +SubClassOf(obo:CL_0002122 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001014)) # Class: obo:CL_0002123 (B220-low CD38-positive IgG-negative class switched memory B cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:dsd") Annotation(oboInOwl:hasDbXref "GOC:rhs") Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:20123131") obo:IAO_0000115 obo:CL_0002123 "A B220-low CD38-positive IgG-negative memory B cell is a CD38-positive IgG-negative class switched memory B cell that lacks IgG on the cell surface with the phenotype B220-low, CD38-positive, and IgG-positive.") AnnotationAssertion(rdfs:label obo:CL_0002123 "B220-low CD38-positive IgG-negative class switched memory B cell") EquivalentClasses(obo:CL_0002123 ObjectIntersectionOf(obo:CL_0002119 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001014))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002123 obo:CL_0002119) +SubClassOf(obo:CL_0002123 obo:CL_0002122) +SubClassOf(obo:CL_0002123 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001014)) # Class: obo:CL_0002124 (CD27-positive gamma-delta T cell) @@ -16770,7 +19114,10 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002124 "gd27-positive") AnnotationAssertion(rdfs:label obo:CL_0002124 "CD27-positive gamma-delta T cell") EquivalentClasses(obo:CL_0002124 ObjectIntersectionOf(obo:CL_0000800 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001963) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032609) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0030217))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002124 obo:CL_0000800) +SubClassOf(obo:CL_0002124 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001963)) SubClassOf(obo:CL_0002124 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002126)) +SubClassOf(obo:CL_0002124 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032609)) +SubClassOf(obo:CL_0002124 ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0030217)) # Class: obo:CL_0002125 (CD27-negative gamma-delta T cell) @@ -16781,7 +19128,11 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:21976777") oboInOwl:hasE AnnotationAssertion(rdfs:label obo:CL_0002125 "CD27-negative gamma-delta T cell") EquivalentClasses(obo:CL_0002125 ObjectIntersectionOf(obo:CL_0000800 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000003455) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001963) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032620) ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0030217))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002125 obo:CL_0000800) +SubClassOf(obo:CL_0002125 ObjectSomeValuesFrom(obo:BFO_0000051 obo:PR_000003455)) +SubClassOf(obo:CL_0002125 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001963)) SubClassOf(obo:CL_0002125 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002126)) +SubClassOf(obo:CL_0002125 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032620)) +SubClassOf(obo:CL_0002125 ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0030217)) # Class: obo:CL_0002126 (CD25-positive, CD27-positive immature gamma-delta T cell) @@ -16791,6 +19142,14 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002126 "2010-08-18T10:35:37Z" AnnotationAssertion(rdfs:label obo:CL_0002126 "CD25-positive, CD27-positive immature gamma-delta T cell") EquivalentClasses(obo:CL_0002126 ObjectIntersectionOf(obo:CL_0000799 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002370) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001380) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001919) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001307) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001318) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001932) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001083) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001839))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002126 obo:CL_0000799) +SubClassOf(obo:CL_0002126 obo:CL_0000893) +SubClassOf(obo:CL_0002126 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001380)) +SubClassOf(obo:CL_0002126 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001919)) +SubClassOf(obo:CL_0002126 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001307)) +SubClassOf(obo:CL_0002126 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001318)) +SubClassOf(obo:CL_0002126 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001932)) +SubClassOf(obo:CL_0002126 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001083)) +SubClassOf(obo:CL_0002126 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001839)) # Class: obo:CL_0002127 (innate effector T cell) @@ -16800,6 +19159,7 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002127 "2010-08-20T02:14:25Z" AnnotationAssertion(rdfs:label obo:CL_0002127 "innate effector T cell") EquivalentClasses(obo:CL_0002127 ObjectIntersectionOf(obo:CL_0000911 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045087))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002127 obo:CL_0000911) +SubClassOf(obo:CL_0002127 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045087)) # Class: obo:CL_0002128 (Tc17 cell) @@ -16816,6 +19176,10 @@ AnnotationAssertion(rdfs:comment obo:CL_0002128 "This cell type is compatible wi AnnotationAssertion(rdfs:label obo:CL_0002128 "Tc17 cell") EquivalentClasses(obo:CL_0002128 ObjectIntersectionOf(obo:CL_0000908 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001015) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001202) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032620) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001201))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002128 obo:CL_0000908) +SubClassOf(obo:CL_0002128 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001015)) +SubClassOf(obo:CL_0002128 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001202)) +SubClassOf(obo:CL_0002128 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032620)) +SubClassOf(obo:CL_0002128 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000001201)) # Class: obo:CL_0002129 (regular atrial cardiac myocyte) @@ -16864,6 +19228,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:cjm") oboInOwl:hasExactSy AnnotationAssertion(oboInOwl:inSubset obo:CL_0002132 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0002132 "stromal cell of ovary") EquivalentClasses(obo:CL_0002132 ObjectIntersectionOf(obo:CL_0000499 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000992))) +SubClassOf(obo:CL_0002132 obo:CL_0000499) +SubClassOf(obo:CL_0002132 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000992)) # Class: obo:CL_0002133 (stromal cell of ovarian cortex) @@ -16883,6 +19249,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002134 "FMA:256171") AnnotationAssertion(rdfs:label obo:CL_0002134 "stromal cell of ovarian medulla") EquivalentClasses(obo:CL_0002134 ObjectIntersectionOf(obo:CL_0000499 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0013192))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002134 obo:CL_0002132) +SubClassOf(obo:CL_0002134 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0013192)) # Class: obo:CL_0002135 (nonkeratinized cell of epidermis) @@ -16930,6 +19297,8 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0002138 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0002138 "endothelial cell of lymphatic vessel") EquivalentClasses(obo:CL_0002138 ObjectIntersectionOf(obo:CL_0002139 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001473) ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0005022))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002138 obo:CL_0002139) +SubClassOf(obo:CL_0002138 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001473)) +SubClassOf(obo:CL_0002138 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0005022)) # Class: obo:CL_0002139 (endothelial cell of vascular tree) @@ -16959,6 +19328,7 @@ EquivalentClasses(obo:CL_0002140 ObjectIntersectionOf(obo:CL_0000317 ObjectSomeV SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002140 obo:CL_0000317) SubClassOf(obo:CL_0002140 obo:CL_0000622) SubClassOf(obo:CL_0002140 obo:CL_1000448) +SubClassOf(obo:CL_0002140 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003487)) # Class: obo:CL_0002141 (active chief cell of parathyroid gland) @@ -16976,8 +19346,10 @@ AnnotationAssertion(terms:contributor obo:CL_0002142 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0002252 "2010-09-08T09:28:20Z") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002252 "FMA:63071") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0002252 "ZFA:0009400") AnnotationAssertion(oboInOwl:inSubset obo:CL_0002252 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0002252 "epithelial cell of esophagus") EquivalentClasses(obo:CL_0002252 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001043))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002252 obo:CL_0002251) +SubClassOf(obo:CL_0002252 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001043)) # Class: obo:CL_0002253 (epithelial cell of large intestine) @@ -18196,6 +20638,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0002253 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0002253 "epithelial cell of large intestine") EquivalentClasses(obo:CL_0002253 ObjectIntersectionOf(obo:CL_0002563 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000059))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002253 obo:CL_0002563) +SubClassOf(obo:CL_0002253 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000059)) # Class: obo:CL_0002254 (epithelial cell of small intestine) @@ -18207,6 +20650,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0002254 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0002254 "epithelial cell of small intestine") EquivalentClasses(obo:CL_0002254 ObjectIntersectionOf(obo:CL_0002563 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002108))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002254 obo:CL_0002563) +SubClassOf(obo:CL_0002254 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002108)) # Class: obo:CL_0002255 (stromal cell of endometrium) @@ -18247,6 +20691,7 @@ AnnotationAssertion(rdfs:label obo:CL_0002257 "epithelial cell of thyroid gland" EquivalentClasses(obo:CL_0002257 ObjectIntersectionOf(obo:CL_0002076 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002046))) SubClassOf(obo:CL_0002257 obo:CL_0000150) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002257 obo:CL_0002076) +SubClassOf(obo:CL_0002257 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002046)) # Class: obo:CL_0002258 (thyroid follicular cell) @@ -18282,8 +20727,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002260 "2010-09-08T02:29:38Z" AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002260 "FMA:70547") AnnotationAssertion(rdfs:label obo:CL_0002260 "epithelial cell of parathyroid gland") EquivalentClasses(obo:CL_0002260 ObjectIntersectionOf(obo:CL_0002076 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001132))) -SubClassOf(obo:CL_0002260 obo:CL_0000150) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002260 obo:CL_0002076) +SubClassOf(obo:CL_0002260 obo:CL_1001593) # Class: obo:CL_0002261 (endothelial cell of viscerocranial mucosa) @@ -18305,6 +20750,8 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0002262 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0002262 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0002262 "endothelial cell of sinusoid") EquivalentClasses(obo:CL_0002262 ObjectIntersectionOf(obo:CL_0000115 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003909))) +SubClassOf(obo:CL_0002262 obo:CL_0000115) +SubClassOf(obo:CL_0002262 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003909)) # Class: obo:CL_0002263 (transitional cell of parathyroid gland) @@ -18324,6 +20771,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002264 "FMA:83411") AnnotationAssertion(rdfs:label obo:CL_0002264 "type A cell of stomach") EquivalentClasses(obo:CL_0002264 ObjectIntersectionOf(obo:CL_0002067 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000945))) SubClassOf(obo:CL_0002264 obo:CL_0002067) +SubClassOf(obo:CL_0002264 obo:CL_0002659) # Class: obo:CL_0002265 (type D cell of colon) @@ -18337,7 +20785,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002265 "delta cell of colon AnnotationAssertion(rdfs:label obo:CL_0002265 "type D cell of colon") EquivalentClasses(obo:CL_0002265 ObjectIntersectionOf(obo:CL_0000502 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001155))) SubClassOf(obo:CL_0002265 obo:CL_0000502) -SubClassOf(obo:CL_0002265 obo:CL_0002658) +SubClassOf(obo:CL_0002265 obo:CL_0009042) # Class: obo:CL_0002266 (type D cell of small intestine) @@ -18351,7 +20799,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002266 "small intestine del AnnotationAssertion(rdfs:label obo:CL_0002266 "type D cell of small intestine") EquivalentClasses(obo:CL_0002266 ObjectIntersectionOf(obo:CL_0000502 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002108))) SubClassOf(obo:CL_0002266 obo:CL_0000502) -SubClassOf(obo:CL_0002266 obo:CL_0002254) +SubClassOf(obo:CL_0002266 obo:CL_0009006) # Class: obo:CL_0002267 (type D cell of stomach) @@ -18376,7 +20824,6 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002268 "FMA:63418") AnnotationAssertion(oboInOwl:inSubset obo:CL_0002268 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0002268 "P/D1 enteroendocrine cell") SubClassOf(obo:CL_0002268 obo:CL_0000164) -SubClassOf(obo:CL_0002268 obo:CL_0000167) SubClassOf(obo:CL_0002268 obo:CL_0002269) # Class: obo:CL_0002269 (vasoactive intestinal peptide secreting cell) @@ -18395,7 +20842,6 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002270 "2010-09-10T02:13:47Z" AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0002270 "Mo enteroendocrine cell") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002270 "FMA:62941") AnnotationAssertion(rdfs:label obo:CL_0002270 "type EC2 enteroendocrine cell") -SubClassOf(obo:CL_0002270 obo:CL_0000458) SubClassOf(obo:CL_0002270 obo:CL_0000577) SubClassOf(obo:CL_0002270 obo:CL_0002272) @@ -18424,7 +20870,6 @@ AnnotationAssertion(terms:contributor obo:CL_0002273 ) oboInOwl:hasDbXref obo:CL_0002275 "ZFA:0005742") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002275 "PP cell of pancreatic islet") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002275 "PP-cell of pancreatic islet") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002275 "pancreatic polypeptide-secreting cell") @@ -18454,6 +20901,9 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0002275 core:human_reference_atlas) AnnotationAssertion(rdfs:comment obo:CL_0002275 "The term PP cell of pancreatic acinus was obsoleted due to a lack of evidence, making PP cell of pancreatic islets synonymous with pancreatic PP cell.") AnnotationAssertion(rdfs:label obo:CL_0002275 "pancreatic PP cell") EquivalentClasses(obo:CL_0002275 ObjectIntersectionOf(obo:CL_0000696 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000006) ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001264))) +SubClassOf(obo:CL_0002275 obo:CL_0000696) +SubClassOf(obo:CL_0002275 obo:CL_0008024) +SubClassOf(obo:CL_0002275 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000006)) # Class: obo:CL_0002276 (obsolete PP cell of pancreatic acinus) @@ -18486,9 +20936,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002278 "FMA:62942") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002278 "type K enteroendocrine cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0002278 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0002278 "GIP cell") -SubClassOf(obo:CL_0002278 obo:CL_0000164) SubClassOf(obo:CL_0002278 obo:CL_0000167) -SubClassOf(obo:CL_0002278 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002108)) +SubClassOf(obo:CL_0002278 obo:CL_0009006) # Class: obo:CL_0002279 (type L enteroendocrine cell) @@ -18661,6 +21110,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0002293 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0002293 "epithelial cell of thymus") EquivalentClasses(obo:CL_0002293 ObjectIntersectionOf(obo:CL_0002076 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002370))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002293 obo:CL_0002076) +SubClassOf(obo:CL_0002293 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002370)) # Class: obo:CL_0002294 (type-1 epithelial cell of thymus) @@ -18751,6 +21201,7 @@ AnnotationAssertion(rdfs:label obo:CL_0002301 "type B synovial cell") EquivalentClasses(obo:CL_0002301 ObjectIntersectionOf(obo:CL_0000499 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002018))) SubClassOf(obo:CL_0002301 obo:CL_0000214) SubClassOf(obo:CL_0002301 obo:CL_0000499) +SubClassOf(obo:CL_0002301 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002018)) SubClassOf(obo:CL_0002301 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030213)) SubClassOf(obo:CL_0002301 ObjectSomeValuesFrom(obo:RO_0003000 obo:UBERON_0001090)) @@ -18764,9 +21215,9 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002302 "type A synoviocyte" AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:10770586") rdfs:comment obo:CL_0002302 "Type A cells are usually round and located in the upper part of the synovial intima.") AnnotationAssertion(rdfs:label obo:CL_0002302 "type A synovial cell") SubClassOf(obo:CL_0002302 obo:CL_0000214) +SubClassOf(obo:CL_0002302 obo:CL_0000234) SubClassOf(obo:CL_0002302 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002018)) SubClassOf(Annotation(oboInOwl:hasDbXref "PMID:10770586") obo:CL_0002302 ObjectSomeValuesFrom(obo:RO_0001000 obo:CL_0000842)) -SubClassOf(obo:CL_0002302 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0006909)) # Class: obo:CL_0002303 (pigmented ciliary epithelial cell) @@ -18830,6 +21281,7 @@ EquivalentClasses(obo:CL_0002306 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeV SubClassOf(obo:CL_0002306 obo:CL_0000239) SubClassOf(obo:CL_0002306 obo:CL_0002078) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002306 obo:CL_1000494) +SubClassOf(obo:CL_0002306 obo:CL_1000615) SubClassOf(obo:CL_0002306 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004134)) # Class: obo:CL_0002307 (brush border cell of the proximal tubule) @@ -18838,7 +21290,6 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl AnnotationAssertion(terms:contributor obo:CL_0002307 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0002307 "2010-09-14T11:29:20Z") AnnotationAssertion(rdfs:label obo:CL_0002307 "brush border cell of the proximal tubule") -SubClassOf(obo:CL_0002307 obo:CL_0000239) SubClassOf(obo:CL_0002307 obo:CL_0002306) # Class: obo:CL_0002308 (epithelial cell of skin gland) @@ -18851,6 +21302,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002308 "epithelial cell of AnnotationAssertion(rdfs:label obo:CL_0002308 "epithelial cell of skin gland") EquivalentClasses(obo:CL_0002308 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002419))) SubClassOf(obo:CL_0002308 obo:CL_0002159) +SubClassOf(obo:CL_0002308 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002419)) # Class: obo:CL_0002309 (corticotroph) @@ -18919,6 +21371,9 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002313 "neuro-epithelial ce AnnotationAssertion(rdfs:label obo:CL_0002313 "endocrine-paracrine cell of prostate gland") EquivalentClasses(obo:CL_0002313 ObjectIntersectionOf(obo:CL_0002159 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002367) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0046879))) SubClassOf(obo:CL_0002313 obo:CL_0000150) +SubClassOf(obo:CL_0002313 obo:CL_0002159) +SubClassOf(obo:CL_0002313 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002367)) +SubClassOf(obo:CL_0002313 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0046879)) # Class: obo:CL_0002314 (external supporting cell of vestibular epithelium) @@ -18937,6 +21392,9 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002315 "2010-09-14T03:31:38Z" AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002315 "FMA:79796") AnnotationAssertion(rdfs:label obo:CL_0002315 "supporting cell of cochlea") EquivalentClasses(obo:CL_0002315 ObjectIntersectionOf(obo:CL_0005014 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001844))) +SubClassOf(obo:CL_0002315 obo:CL_0001035) +SubClassOf(obo:CL_0002315 obo:CL_0005014) +SubClassOf(obo:CL_0002315 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001844)) # Class: obo:CL_0002316 (supporting cell of vestibular epithelium) @@ -18946,6 +21404,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002316 "2010-09-14T03:31:44Z" AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002316 "FMA:75607") AnnotationAssertion(rdfs:label obo:CL_0002316 "supporting cell of vestibular epithelium") EquivalentClasses(obo:CL_0002316 ObjectIntersectionOf(obo:CL_0005014 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001862))) +SubClassOf(obo:CL_0002316 obo:CL_0005014) +SubClassOf(obo:CL_0002316 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001862)) # Class: obo:CL_0002317 (external limiting cell of vestibular epithelium) @@ -18963,6 +21423,7 @@ AnnotationAssertion(terms:contributor obo:CL_0002318 ) oboInOwl:hasDbXref obo:CL_0002320 "ZFA:0009392") AnnotationAssertion(oboInOwl:inSubset obo:CL_0002320 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0002320 "connective tissue cell") EquivalentClasses(obo:CL_0002320 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002384))) +SubClassOf(obo:CL_0002320 obo:CL_0000000) +SubClassOf(obo:CL_0002320 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002384)) # Class: obo:CL_0002321 (embryonic cell (metazoa)) @@ -18997,6 +21463,7 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002321 "2010-09-15T03:39:21Z" AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002321 "CALOHA:TS-0263") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002321 "FMA:82840") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002321 "WBbt:0007028") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0002321 "ZFA:0007089") AnnotationAssertion(rdfs:label obo:CL_0002321 "embryonic cell (metazoa)") SubClassOf(obo:CL_0002321 obo:CL_0000000) @@ -19025,20 +21492,31 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002323 "BTO:0000066") AnnotationAssertion(rdfs:label obo:CL_0002323 "amniocyte") EquivalentClasses(obo:CL_0002323 ObjectIntersectionOf(obo:CL_0000349 ObjectSomeValuesFrom(obo:RO_0001025 obo:UBERON_0000173))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002323 obo:CL_0000349) +SubClassOf(obo:CL_0002323 ObjectSomeValuesFrom(obo:RO_0001025 obo:UBERON_0000173)) -# Class: obo:CL_0002324 (myoepithelial cell of mammary gland) +# Class: obo:CL_0002324 (basal-myoepithelial cell of mammary gland) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:11250738") Annotation(oboInOwl:hasDbXref "PMID:19022771") obo:IAO_0000115 obo:CL_0002324 "A myoepithelial cell that surrounds milk-secreting luminal epithelial cells. This cell type contracts under the stimulation of oxytocin and is attached to the basement membrane by hemidesmosomes and to the adjacent luminal cells by desmosomes. This cell type expresses high level of keratin-14 and is estrogen receptor alpha negative.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:11250738") Annotation(oboInOwl:hasDbXref "PMID:19022771") Annotation(oboInOwl:hasDbXref "PMID:38059556") obo:IAO_0000115 obo:CL_0002324 "A myoepithelial cell that is part of a mammary gland and is located in the basal layer. During lactation, a basal-myoepithelial cell of mammary gland contracts under the stimulation of oxytocin. In humans, a basal-myoepithelial cell of mammary gland can be identified by high levels of CD49f and low levels of EpCAM.") +AnnotationAssertion(terms:contributor obo:CL_0002324 ) AnnotationAssertion(terms:contributor obo:CL_0002324 ) +AnnotationAssertion(terms:contributor obo:CL_0002324 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0002324 "2010-09-20T11:42:14Z") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37694522") oboInOwl:hasBroadSynonym obo:CL_0002324 "basal myoepithelial cell") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37380767") oboInOwl:hasBroadSynonym obo:CL_0002324 "basal-myoepithelial cell") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002324 "CALOHA:TS-2378") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002324 "FMA:67800") -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:67800") oboInOwl:hasExactSynonym obo:CL_0002324 "basal cell of lactiferous duct") -AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002324 "myoepithelial cell of lactiferous gland") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:11250738") oboInOwl:hasExactSynonym obo:CL_0002324 "myoepithelial cell of mammary gland") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:67800") oboInOwl:hasNarrowSynonym obo:CL_0002324 "basal cell of lactiferous duct") +AnnotationAssertion(oboInOwl:hasNarrowSynonym obo:CL_0002324 "myoepithelial cell of lactiferous gland") +AnnotationAssertion(Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_0002324 "B-Myo cell") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:38059556") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_0002324 "BM") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37380767") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_0002324 "basal") AnnotationAssertion(oboInOwl:inSubset obo:CL_0002324 cl:cellxgene_subset) -AnnotationAssertion(rdfs:label obo:CL_0002324 "myoepithelial cell of mammary gland") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:38059556") rdfs:comment obo:CL_0002324 "Due inconsistencies in naming this and other mammary gland epithelial cell types, several mammary gland experts gathered for a breast atlas annotation jamboree organized by Chan-Zuckerberg initiative. They agreed to label this cell type as basal-myoepithelial cell (and abbreviated: B-Myo cell).") +AnnotationAssertion(rdfs:label obo:CL_0002324 "basal-myoepithelial cell of mammary gland") EquivalentClasses(obo:CL_0002324 ObjectIntersectionOf(obo:CL_0000185 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001911))) SubClassOf(obo:CL_0002324 obo:CL_0000185) +SubClassOf(obo:CL_0002324 obo:CL_0002327) # Class: obo:CL_0002325 (lactocyte) @@ -19062,6 +21540,8 @@ AnnotationAssertion(rdfs:label obo:CL_0002325 "lactocyte") EquivalentClasses(obo:CL_0002325 ObjectIntersectionOf(obo:CL_0000150 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003214))) SubClassOf(obo:CL_0002325 obo:CL_0000314) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002325 obo:CL_0002159) +SubClassOf(obo:CL_0002325 obo:CL_1001586) +SubClassOf(obo:CL_0002325 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003214)) SubClassOf(obo:CL_0002325 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_4033057)) # Class: obo:CL_0002326 (luminal epithelial cell of mammary gland) @@ -19073,6 +21553,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:21930782") oboInOwl:hasB AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002326 "FMA:73280") AnnotationAssertion(oboInOwl:inSubset obo:CL_0002326 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0002326 "luminal epithelial cell of mammary gland") +SubClassOf(obo:CL_0002326 obo:BFO_0000002) SubClassOf(obo:CL_0002326 obo:CL_0000069) SubClassOf(obo:CL_0002326 obo:CL_0002327) SubClassOf(obo:CL_0002326 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0009116)) @@ -19088,6 +21569,8 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002327 "mammary epithelial AnnotationAssertion(oboInOwl:inSubset obo:CL_0002327 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0002327 "mammary gland epithelial cell") EquivalentClasses(obo:CL_0002327 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001911))) +SubClassOf(obo:CL_0002327 obo:CL_0000066) +SubClassOf(obo:CL_0002327 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001911)) # Class: obo:CL_0002328 (bronchial epithelial cell) @@ -19098,6 +21581,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002328 "BTO:0002922") AnnotationAssertion(oboInOwl:inSubset obo:CL_0002328 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0002328 "bronchial epithelial cell") EquivalentClasses(obo:CL_0002328 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002185))) +SubClassOf(obo:CL_0002328 obo:CL_0002202) SubClassOf(obo:CL_0002328 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002031)) # Class: obo:CL_0002329 (basal epithelial cell of tracheobronchial tree) @@ -19136,6 +21620,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0002332 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0002332 "ciliated cell of the bronchus") EquivalentClasses(obo:CL_0002332 ObjectIntersectionOf(obo:CL_0000064 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002185))) SubClassOf(obo:CL_0002332 obo:CL_0002145) +SubClassOf(obo:CL_0002332 obo:CL_0002328) # Class: obo:CL_0002333 (neural crest derived adipocyte) @@ -19144,6 +21629,7 @@ AnnotationAssertion(terms:contributor obo:CL_0002333 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0002372 "2010-09-24T01:13:01Z") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002372 "FBbt:00005812") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0002372 "FBbt:00005812") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002372 "myotubule") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002372 "single cell sarcomere") AnnotationAssertion(rdfs:label obo:CL_0002372 "myotube") EquivalentClasses(obo:CL_0002372 ObjectIntersectionOf(obo:CL_0000187 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0030017) ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001908) ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0002478))) +SubClassOf(obo:CL_0002372 obo:CL_0000228) +SubClassOf(obo:CL_0002372 obo:CL_0000737) +SubClassOf(obo:CL_0002372 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0002478)) # Class: obo:CL_0002373 (growth hormone releasing hormone secreting cell) @@ -19586,6 +22154,9 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002374 "2010-09-24T01:49:31Z" AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002374 "ear receptor cell") AnnotationAssertion(rdfs:label obo:CL_0002374 "ear hair cell") EquivalentClasses(obo:CL_0002374 ObjectIntersectionOf(obo:CL_0000855 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001690))) +SubClassOf(obo:CL_0002374 obo:CL_0000006) +SubClassOf(obo:CL_0002374 obo:CL_0000855) +SubClassOf(obo:CL_0002374 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001690)) # Class: obo:CL_0002375 (Schwann cell precursor) @@ -19596,6 +22167,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002375 "Schwann cell precur AnnotationAssertion(oboInOwl:inSubset obo:CL_0002375 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0002375 "Schwann cell precursor") SubClassOf(obo:CL_0002375 obo:CL_0000030) +SubClassOf(obo:CL_0002375 obo:CL_0011026) SubClassOf(obo:CL_0002375 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000333)) # Class: obo:CL_0002376 (non-myelinating Schwann cell) @@ -19614,7 +22186,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:cvs") Annotation(oboInOwl AnnotationAssertion(terms:contributor obo:CL_0002377 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0002377 "2010-09-24T02:10:31Z") AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0002377 "Schwann cell") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002377 "ZFA:0001725") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0002377 "ZFA:0001725") AnnotationAssertion(oboInOwl:inSubset obo:CL_0002377 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0002377 "immature Schwann cell") SubClassOf(obo:CL_0002377 obo:CL_0002573) @@ -19755,6 +22327,11 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0002393 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0002393 "intermediate monocyte") EquivalentClasses(obo:CL_0002393 ObjectIntersectionOf(obo:CL_0000576 ObjectSomeValuesFrom(obo:CL_4030044 obo:GO_0030224) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001199) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289))) SubClassOf(obo:CL_0002393 obo:CL_0000576) +SubClassOf(obo:CL_0002393 ObjectSomeValuesFrom(obo:CL_4030044 obo:GO_0030224)) +SubClassOf(obo:CL_0002393 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001002)) +SubClassOf(obo:CL_0002393 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001020)) +SubClassOf(obo:CL_0002393 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001199)) +SubClassOf(obo:CL_0002393 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001289)) SubClassOf(obo:CL_0002393 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000860)) # Class: obo:CL_0002394 (CD141-positive myeloid dendritic cell) @@ -19769,6 +22346,10 @@ AnnotationAssertion(rdfs:comment obo:CL_0002394 "Markers are found in human cell AnnotationAssertion(rdfs:label obo:CL_0002394 "CD141-positive myeloid dendritic cell") EquivalentClasses(obo:CL_0002394 ObjectIntersectionOf(obo:CL_0000782 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002105) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002827) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032606) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0042590))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002394 obo:CL_0000782) +SubClassOf(obo:CL_0002394 obo:CL_0000784) +SubClassOf(obo:CL_0002394 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002105)) +SubClassOf(obo:CL_0002394 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002827)) +SubClassOf(obo:CL_0002394 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0042590)) # Class: obo:CL_0002395 (Gr1-high classical monocyte) @@ -19779,6 +22360,11 @@ AnnotationAssertion(rdfs:comment obo:CL_0002395 "Markers are associated with mic AnnotationAssertion(rdfs:label obo:CL_0002395 "Gr1-high classical monocyte") EquivalentClasses(obo:CL_0002395 ObjectIntersectionOf(obo:CL_0000860 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001014) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001206) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001879) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001012) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002062) ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000002980))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002395 obo:CL_0000860) +SubClassOf(obo:CL_0002395 obo:CL_0001022) +SubClassOf(obo:CL_0002395 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001014)) +SubClassOf(obo:CL_0002395 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001206)) +SubClassOf(obo:CL_0002395 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001879)) +SubClassOf(obo:CL_0002395 ObjectSomeValuesFrom(obo:RO_0015015 obo:PR_000002980)) # Class: obo:CL_0002396 (CD14-low, CD16-positive monocyte) @@ -19793,7 +22379,10 @@ AnnotationAssertion(rdfs:comment obo:CL_0002396 "Markers are associated with hum AnnotationAssertion(rdfs:label obo:CL_0002396 "CD14-low, CD16-positive monocyte") EquivalentClasses(obo:CL_0002396 ObjectIntersectionOf(obo:CL_0000875 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001483) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001889))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002396 obo:CL_0000875) +SubClassOf(obo:CL_0002396 obo:CL_0001054) +SubClassOf(obo:CL_0002396 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001483)) SubClassOf(obo:CL_0002396 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002397)) +SubClassOf(obo:CL_0002396 ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001889)) # Class: obo:CL_0002397 (CD14-positive, CD16-positive monocyte) @@ -19806,6 +22395,8 @@ AnnotationAssertion(rdfs:comment obo:CL_0002397 "This cell type is compatible wi AnnotationAssertion(rdfs:label obo:CL_0002397 "CD14-positive, CD16-positive monocyte") EquivalentClasses(obo:CL_0002397 ObjectIntersectionOf(obo:CL_0001054 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001199) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001483))) SubClassOf(obo:CL_0002397 obo:CL_0001054) +SubClassOf(obo:CL_0002397 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001199)) +SubClassOf(obo:CL_0002397 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001483)) # Class: obo:CL_0002398 (Gr1-positive, CD43-positive monocyte) @@ -19814,7 +22405,10 @@ AnnotationAssertion(terms:contributor obo:CL_0002398 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0002450 "2010-11-10T01:41:00Z") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0002450 "ZFA:0005565") AnnotationAssertion(rdfs:label obo:CL_0002450 "tether cell") SubClassOf(obo:CL_0002450 obo:CL_0002374) @@ -20396,9 +23072,9 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0002453 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0002453 core:human_reference_atlas) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ISBN:9780702028991") Annotation(oboInOwl:hasDbXref "PMID:10704434") Annotation(oboInOwl:hasDbXref "PMID:2182078") rdfs:comment obo:CL_0002453 "This cell type can be purified from optic nerves and other regions of the embryonic, postnatal and adult rat CNS and can be differentiated in vitro to oligodendrocytes and type-2 astrocytes. Some references use the terms 'oligodendrocyte precursor cell' and 'oligodendrocyte type-2 astrocyte (O-2A) progenitor' to refer to the same entity (e.g., PMID:10704434), while others describe an oligodendrocyte type-2 astrocyte (O-2A) progenitor cell as the precurosr to oligodendrocyte- and type-2 astrocyte- progenitor cells (e.g, ISBN:9780702028991).") AnnotationAssertion(rdfs:label obo:CL_0002453 "oligodendrocyte precursor cell") +SubClassOf(obo:CL_0002453 obo:CL_0011026) SubClassOf(obo:CL_0002453 ObjectIntersectionOf(obo:CL_0000123 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001017))) SubClassOf(obo:CL_0002453 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000339)) -SubClassOf(obo:CL_0002453 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030154)) # Class: obo:CL_0002454 (Cd4-negative, CD8_alpha-negative, CD11b-positive dendritic cell) @@ -20410,6 +23086,8 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002454 "spleen double-negat AnnotationAssertion(rdfs:label obo:CL_0002454 "Cd4-negative, CD8_alpha-negative, CD11b-positive dendritic cell") EquivalentClasses(obo:CL_0002454 ObjectIntersectionOf(obo:CL_0002465 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004) ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002454 obo:CL_0002465) +SubClassOf(obo:CL_0002454 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001004)) +SubClassOf(obo:CL_0002454 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084)) # Class: obo:CL_0002455 (CD8_alpha-negative plasmacytoid dendritic cell) @@ -20420,6 +23098,8 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002455 "DC.pDC.8-") AnnotationAssertion(rdfs:label obo:CL_0002455 "CD8_alpha-negative plasmacytoid dendritic cell") EquivalentClasses(obo:CL_0002455 ObjectIntersectionOf(obo:CL_0000989 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001004))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002455 obo:CL_0000989) +SubClassOf(obo:CL_0002455 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084)) +SubClassOf(obo:CL_0002455 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001004)) # Class: obo:CL_0002456 (CD8_alpha-positive plasmacytoid dendritic cell) @@ -20430,6 +23110,8 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002456 "DC.pDC.8+") AnnotationAssertion(rdfs:label obo:CL_0002456 "CD8_alpha-positive plasmacytoid dendritic cell") EquivalentClasses(obo:CL_0002456 ObjectIntersectionOf(obo:CL_0000989 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001004) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001084))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002456 obo:CL_0000989) +SubClassOf(obo:CL_0002456 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001004)) +SubClassOf(obo:CL_0002456 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001084)) # Class: obo:CL_0002457 (epidermal Langerhans cell) @@ -20442,6 +23124,10 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0002457 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0002457 "epidermal Langerhans cell") EquivalentClasses(obo:CL_0002457 ObjectIntersectionOf(obo:CL_0000453 ObjectSomeValuesFrom(obo:RO_0001025 obo:UBERON_0001003) ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0042613) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001012) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001014))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002457 obo:CL_0000453) +SubClassOf(obo:CL_0002457 obo:CL_0002465) +SubClassOf(obo:CL_0002457 ObjectSomeValuesFrom(obo:RO_0001025 obo:UBERON_0001003)) +SubClassOf(obo:CL_0002457 ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0042613)) +SubClassOf(obo:CL_0002457 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001014)) # Class: obo:CL_0002458 (langerin-positive dermal dendritic cell) @@ -20451,6 +23137,7 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002458 "2010-11-22T04:06:22Z" AnnotationAssertion(rdfs:label obo:CL_0002458 "langerin-positive dermal dendritic cell") EquivalentClasses(obo:CL_0002458 ObjectIntersectionOf(obo:CL_0001006 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001010))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002458 obo:CL_0001006) +SubClassOf(obo:CL_0002458 obo:CL_0002461) # Class: obo:CL_0002459 (langerin-negative dermal dendritic cell) @@ -20460,6 +23147,7 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002459 "2010-11-22T04:09:44Z" AnnotationAssertion(rdfs:label obo:CL_0002459 "langerin-negative dermal dendritic cell") EquivalentClasses(obo:CL_0002459 ObjectIntersectionOf(obo:CL_0001006 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001010) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001012))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002459 obo:CL_0001006) +SubClassOf(obo:CL_0002459 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001010)) # Class: obo:CL_0002460 (CD8alpha-negative thymic conventional dendritic cell) @@ -20472,6 +23160,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0002460 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0002460 "CD8alpha-negative thymic conventional dendritic cell") EquivalentClasses(obo:CL_0002460 ObjectIntersectionOf(obo:CL_0000941 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002460 obo:CL_0000941) +SubClassOf(obo:CL_0002460 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001084)) # Class: obo:CL_0002461 (CD103-positive dendritic cell) @@ -20480,7 +23169,9 @@ AnnotationAssertion(terms:contributor obo:CL_0002461 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0002518 "2011-02-08T10:46:34Z") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002518 "KUPO:0001019") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0002518 "ZFA:0009374") AnnotationAssertion(oboInOwl:inSubset obo:CL_0002518 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0002518 "kidney epithelial cell") EquivalentClasses(obo:CL_0002518 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002113))) +SubClassOf(obo:CL_0002518 obo:CL_0000066) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002518 obo:CL_1000497) # Class: obo:CL_0002519 (interrenal epithelial cell) @@ -21062,6 +23845,7 @@ AnnotationAssertion(terms:contributor obo:CL_0002520 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0002538 "2011-02-28T01:20:20Z") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0002538 "ZFA:0009379") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:23720296") oboInOwl:hasExactSynonym obo:CL_0002538 "small bile duct cholangiocyte") AnnotationAssertion(oboInOwl:inSubset obo:CL_0002538 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0002538 "intrahepatic cholangiocyte") EquivalentClasses(obo:CL_0002538 ObjectIntersectionOf(obo:CL_1000488 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004823))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002538 obo:CL_1000488) +SubClassOf(obo:CL_0002538 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004823)) # Class: obo:CL_0002539 (aortic smooth muscle cell) @@ -21248,7 +24054,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002539 "BTO:0004577") AnnotationAssertion(oboInOwl:inSubset obo:CL_0002539 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0002539 "aortic smooth muscle cell") EquivalentClasses(obo:CL_0002539 ObjectIntersectionOf(obo:CL_0000359 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004178))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002539 obo:CL_0000359) +SubClassOf(obo:CL_0002539 obo:CL_0019018) +SubClassOf(obo:CL_0002539 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004178)) # Class: obo:CL_0002540 (mesenchymal stem cell of the bone marrow) @@ -21257,16 +24064,18 @@ AnnotationAssertion(terms:contributor obo:CL_0002540 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0002541 "2011-02-28T03:04:35Z") -AnnotationAssertion(oboInOwl:inSubset obo:CL_0002541 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0002541 "chorionic membrane mesenchymal stem cell") EquivalentClasses(obo:CL_0002541 ObjectIntersectionOf(obo:CL_0000134 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003124))) +SubClassOf(obo:CL_0002541 obo:CL_0000134) +SubClassOf(obo:CL_0002541 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003124)) # Class: obo:CL_0002542 (obo:CL_0002542) @@ -21289,6 +24098,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0002543 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0002543 "vein endothelial cell") EquivalentClasses(obo:CL_0002543 ObjectIntersectionOf(obo:CL_0000071 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001638))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002543 obo:CL_0000071) +SubClassOf(obo:CL_0002543 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001638)) # Class: obo:CL_0002544 (aortic endothelial cell) @@ -21309,12 +24119,14 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002545 "2011-02-28T03:59:09Z" AnnotationAssertion(rdfs:label obo:CL_0002545 "thoracic aorta endothelial cell") EquivalentClasses(obo:CL_0002545 ObjectIntersectionOf(obo:CL_0002544 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001515))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002545 obo:CL_0002544) +SubClassOf(obo:CL_0002545 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001515)) # Class: obo:CL_0002546 (embryonic blood vessel endothelial progenitor cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0002546 "An endothelial progenitor cell that participates in angiogenesis during development.") AnnotationAssertion(terms:contributor obo:CL_0002546 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0002546 "2011-02-28T04:20:39Z") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0002546 "ZFA:0005773") AnnotationAssertion(rdfs:comment obo:CL_0002546 "See CL:0002619.") AnnotationAssertion(rdfs:label obo:CL_0002546 "embryonic blood vessel endothelial progenitor cell") SubClassOf(obo:CL_0002546 obo:CL_0000222) @@ -21327,6 +24139,7 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002547 "2011-02-28T04:43:41Z" AnnotationAssertion(rdfs:label obo:CL_0002547 "fibroblast of the aortic adventitia") EquivalentClasses(obo:CL_0002547 ObjectIntersectionOf(obo:CL_1000306 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004664))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002547 obo:CL_1000306) +SubClassOf(obo:CL_0002547 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004664)) # Class: obo:CL_0002548 (fibroblast of cardiac tissue) @@ -21339,6 +24152,7 @@ AnnotationAssertion(rdfs:label obo:CL_0002548 "fibroblast of cardiac tissue") EquivalentClasses(obo:CL_0002548 ObjectIntersectionOf(obo:CL_0000057 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000948))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002548 obo:CL_0000057) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002548 obo:CL_0002494) +SubClassOf(obo:CL_0002548 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000948)) # Class: obo:CL_0002549 (fibroblast of choroid plexus) @@ -21348,6 +24162,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002549 "2011-02-28T05:01:39Z" AnnotationAssertion(rdfs:label obo:CL_0002549 "fibroblast of choroid plexus") EquivalentClasses(obo:CL_0002549 ObjectIntersectionOf(obo:CL_0000057 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001886))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002549 obo:CL_0000057) +SubClassOf(obo:CL_0002549 obo:CL_0002319) +SubClassOf(obo:CL_0002549 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001886)) # Class: obo:CL_0002550 (fibroblast of the conjunctiva) @@ -21357,22 +24173,27 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002550 "2011-02-28T05:03:44Z" AnnotationAssertion(rdfs:label obo:CL_0002550 "fibroblast of the conjunctiva") EquivalentClasses(obo:CL_0002550 ObjectIntersectionOf(obo:CL_0000057 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001811))) SubClassOf(obo:CL_0002550 obo:CL_0000057) +SubClassOf(obo:CL_0002550 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001811)) # Class: obo:CL_0002551 (fibroblast of dermis) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0002551 "Any skin fibroblast that is part of some dermis.") AnnotationAssertion(terms:contributor obo:CL_0002551 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0002551 "2011-02-28T05:05:33Z") AnnotationAssertion(rdfs:label obo:CL_0002551 "fibroblast of dermis") EquivalentClasses(obo:CL_0002551 ObjectIntersectionOf(obo:CL_0002620 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002067))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002551 obo:CL_0002620) +SubClassOf(obo:CL_0002551 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002067)) # Class: obo:CL_0002552 (fibroblast of gingiva) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0002552 "Any fibroblast that is part of some gingiva.") AnnotationAssertion(terms:contributor obo:CL_0002552 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0002552 "2011-02-28T05:09:12Z") AnnotationAssertion(rdfs:label obo:CL_0002552 "fibroblast of gingiva") EquivalentClasses(obo:CL_0002552 ObjectIntersectionOf(obo:CL_0000057 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001828))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002552 obo:CL_0000057) +SubClassOf(obo:CL_0002552 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001828)) # Class: obo:CL_0002553 (fibroblast of lung) @@ -21385,6 +24206,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0002553 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0002553 "fibroblast of lung") EquivalentClasses(obo:CL_0002553 ObjectIntersectionOf(obo:CL_0000057 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002048))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002553 obo:CL_0000057) +SubClassOf(obo:CL_0002553 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002048)) # Class: obo:CL_0002554 (fibroblast of lymphatic vessel) @@ -21394,6 +24216,7 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002554 "2011-02-28T05:16:18Z" AnnotationAssertion(rdfs:label obo:CL_0002554 "fibroblast of lymphatic vessel") EquivalentClasses(obo:CL_0002554 ObjectIntersectionOf(obo:CL_0000057 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001473))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002554 obo:CL_0000057) +SubClassOf(obo:CL_0002554 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001473)) # Class: obo:CL_0002555 (fibroblast of mammary gland) @@ -21404,6 +24227,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0002555 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0002555 "fibroblast of mammary gland") EquivalentClasses(obo:CL_0002555 ObjectIntersectionOf(obo:CL_0000057 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001911))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002555 obo:CL_0000057) +SubClassOf(obo:CL_0002555 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001911)) # Class: obo:CL_0002556 (fibroblast of periodontium) @@ -21413,6 +24237,7 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002556 "2011-02-28T05:19:48Z" AnnotationAssertion(rdfs:label obo:CL_0002556 "fibroblast of periodontium") EquivalentClasses(obo:CL_0002556 ObjectIntersectionOf(obo:CL_0000057 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001758))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002556 obo:CL_0000057) +SubClassOf(obo:CL_0002556 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001758)) # Class: obo:CL_0002557 (fibroblast of pulmonary artery) @@ -21424,6 +24249,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0002557 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0002557 "fibroblast of pulmonary artery") EquivalentClasses(obo:CL_0002557 ObjectIntersectionOf(obo:CL_0000057 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002012))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002557 obo:CL_0000057) +SubClassOf(obo:CL_0002557 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002012)) # Class: obo:CL_0002558 (fibroblast of villous mesenchyme) @@ -21443,6 +24269,8 @@ AnnotationAssertion(terms:contributor obo:CL_0002559 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0002563 "2011-03-01T05:18:31Z") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0002563 "ZFA:0009399") AnnotationAssertion(oboInOwl:inSubset obo:CL_0002563 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0002563 "intestinal epithelial cell") EquivalentClasses(obo:CL_0002563 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000160))) +SubClassOf(obo:CL_0002563 obo:CL_0002251) SubClassOf(obo:CL_0002563 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001277)) # Class: obo:CL_0002564 (nucleus pulposus cell of intervertebral disc) @@ -21491,6 +24326,7 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002564 "2011-03-02T02:12:23Z" AnnotationAssertion(rdfs:label obo:CL_0002564 "nucleus pulposus cell of intervertebral disc") EquivalentClasses(obo:CL_0002564 ObjectIntersectionOf(obo:CL_0002320 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002242))) SubClassOf(obo:CL_0002564 obo:CL_0002320) +SubClassOf(obo:CL_0002564 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002242)) # Class: obo:CL_0002565 (iris pigment epithelial cell) @@ -21504,6 +24340,7 @@ AnnotationAssertion(rdfs:label obo:CL_0002565 "iris pigment epithelial cell") EquivalentClasses(obo:CL_0002565 ObjectIntersectionOf(obo:CL_0000342 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002506))) SubClassOf(obo:CL_0002565 obo:CL_0000066) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002565 obo:CL_0000342) +SubClassOf(obo:CL_0002565 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002506)) # Class: obo:CL_0002566 (dark melanocyte) @@ -21542,6 +24379,9 @@ AnnotationAssertion(terms:contributor obo:CL_0002569 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0002579 "2011-03-03T04:19:42Z") AnnotationAssertion(rdfs:label obo:CL_0002579 "omentum preadipocyte") EquivalentClasses(obo:CL_0002579 ObjectIntersectionOf(obo:CL_0002334 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003688))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002579 obo:CL_0002334) +SubClassOf(obo:CL_0002579 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003688)) # Class: obo:CL_0002580 (preadipocyte of the breast) @@ -21654,14 +24508,17 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002580 "2011-03-03T04:19:46Z" AnnotationAssertion(rdfs:label obo:CL_0002580 "preadipocyte of the breast") EquivalentClasses(obo:CL_0002580 ObjectIntersectionOf(obo:CL_0002334 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000310))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002580 obo:CL_0002334) +SubClassOf(obo:CL_0002580 obo:CL_4006000) # Class: obo:CL_0002581 (perirenal preadipocyte) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:20106964") Annotation(oboInOwl:hasDbXref "PMID:31079959") obo:IAO_0000115 obo:CL_0002581 "A preadipocyte that is part of a perirenal fat tissue.") AnnotationAssertion(terms:contributor obo:CL_0002581 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0002581 "2011-03-03T04:20:04Z") AnnotationAssertion(rdfs:label obo:CL_0002581 "perirenal preadipocyte") EquivalentClasses(obo:CL_0002581 ObjectIntersectionOf(obo:CL_0002334 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005406))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002581 obo:CL_0002334) +SubClassOf(obo:CL_0002581 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005406)) # Class: obo:CL_0002582 (visceral preadipocyte) @@ -21679,6 +24536,7 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002583 "2011-03-03T04:33:01Z" AnnotationAssertion(rdfs:label obo:CL_0002583 "subcutaneous preadipocyte") EquivalentClasses(obo:CL_0002583 ObjectIntersectionOf(obo:CL_0002334 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002072))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002583 obo:CL_0002334) +SubClassOf(obo:CL_0002583 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002072)) # Class: obo:CL_0002584 (renal cortical epithelial cell) @@ -21701,6 +24559,8 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0002585 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0002585 "retinal blood vessel endothelial cell") EquivalentClasses(obo:CL_0002585 ObjectIntersectionOf(obo:CL_0000071 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000966))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002585 obo:CL_0000071) +SubClassOf(obo:CL_0002585 obo:CL_0009004) +SubClassOf(obo:CL_0002585 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000966)) # Class: obo:CL_0002586 (retinal pigment epithelial cell) @@ -21715,7 +24575,10 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0002586 cl:eye_upper_slim) AnnotationAssertion(oboInOwl:inSubset obo:CL_0002586 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0002586 "retinal pigment epithelial cell") EquivalentClasses(obo:CL_0002586 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001782))) +SubClassOf(obo:CL_0002586 obo:CL_0000066) SubClassOf(obo:CL_0002586 obo:CL_0000149) +SubClassOf(obo:CL_0002586 obo:CL_0009004) +SubClassOf(obo:CL_0002586 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001782)) SubClassOf(obo:CL_0002586 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0042470)) # Class: obo:CL_0002587 (obo:CL_0002587) @@ -21731,7 +24594,8 @@ AnnotationAssertion(terms:contributor obo:CL_0002588 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0002598 "2011-03-06T05:46:39Z") @@ -21833,7 +24709,8 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0002598 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0002598 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0002598 "bronchial smooth muscle cell") EquivalentClasses(obo:CL_0002598 ObjectIntersectionOf(obo:CL_0000192 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002185))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002598 obo:CL_0000192) +SubClassOf(obo:CL_0002598 obo:CL_0019019) +SubClassOf(obo:CL_0002598 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002185)) # Class: obo:CL_0002599 (smooth muscle cell of the esophagus) @@ -21843,6 +24720,7 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002599 "2011-03-06T05:48:17Z" AnnotationAssertion(rdfs:label obo:CL_0002599 "smooth muscle cell of the esophagus") EquivalentClasses(obo:CL_0002599 ObjectIntersectionOf(obo:CL_0000192 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001043))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002599 obo:CL_0000192) +SubClassOf(obo:CL_0002599 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001043)) # Class: obo:CL_0002600 (smooth muscle cell of trachea) @@ -21852,7 +24730,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002600 "2011-03-06T05:50:28Z" AnnotationAssertion(oboInOwl:inSubset obo:CL_0002600 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0002600 "smooth muscle cell of trachea") EquivalentClasses(obo:CL_0002600 ObjectIntersectionOf(obo:CL_0000192 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003126))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002600 obo:CL_0000192) +SubClassOf(obo:CL_0002600 obo:CL_0019019) +SubClassOf(obo:CL_0002600 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003126)) # Class: obo:CL_0002601 (uterine smooth muscle cell) @@ -21863,15 +24742,18 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0002601 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0002601 "uterine smooth muscle cell") EquivalentClasses(obo:CL_0002601 ObjectIntersectionOf(obo:CL_0000192 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000995))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002601 obo:CL_0000192) +SubClassOf(obo:CL_0002601 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000995)) # Class: obo:CL_0002602 (annulus pulposus cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0002602 "Any connective tissue cell that is part of some annulus fibrosus disci intervertebralis.") AnnotationAssertion(terms:contributor obo:CL_0002602 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0002602 "2011-03-06T06:50:53Z") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002602 "anulus pulposus cell") AnnotationAssertion(rdfs:label obo:CL_0002602 "annulus pulposus cell") EquivalentClasses(obo:CL_0002602 ObjectIntersectionOf(obo:CL_0002320 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004715))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002602 obo:CL_0002320) +SubClassOf(obo:CL_0002602 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004715)) # Class: obo:CL_0002603 (astrocyte of the cerebellum) @@ -21882,6 +24764,8 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0002603 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0002603 "astrocyte of the cerebellum") EquivalentClasses(obo:CL_0002603 ObjectIntersectionOf(obo:CL_0000127 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002037))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002603 obo:CL_0000127) +SubClassOf(obo:CL_0002603 obo:CL_2000005) +SubClassOf(obo:CL_0002603 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002037)) # Class: obo:CL_0002604 (hippocampal astrocyte) @@ -21894,7 +24778,8 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002604 "astrocyte of the hi AnnotationAssertion(oboInOwl:inSubset obo:CL_0002604 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0002604 "hippocampal astrocyte") EquivalentClasses(obo:CL_0002604 ObjectIntersectionOf(obo:CL_0000127 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002421))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002604 obo:CL_0000127) +SubClassOf(obo:CL_0002604 obo:CL_0002605) +SubClassOf(obo:CL_0002604 obo:CL_1001580) # Class: obo:CL_0002605 (astrocyte of the cerebral cortex) @@ -21906,7 +24791,8 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0002605 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0002605 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0002605 "astrocyte of the cerebral cortex") EquivalentClasses(obo:CL_0002605 ObjectIntersectionOf(obo:CL_0000127 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000956))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002605 obo:CL_0000127) +SubClassOf(obo:CL_0002605 obo:CL_0012000) +SubClassOf(obo:CL_0002605 obo:CL_1001579) # Class: obo:CL_0002606 (astrocyte of the spinal cord) @@ -21916,6 +24802,7 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002606 "2011-03-06T07:11:26Z" AnnotationAssertion(rdfs:label obo:CL_0002606 "astrocyte of the spinal cord") EquivalentClasses(obo:CL_0002606 ObjectIntersectionOf(obo:CL_0000127 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002240))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002606 obo:CL_0000127) +SubClassOf(obo:CL_0002606 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002240)) # Class: obo:CL_0002607 (migratory enteric neural crest cell) @@ -21934,6 +24821,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002608 "2011-03-06T07:31:49Z" AnnotationAssertion(oboInOwl:inSubset obo:CL_0002608 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0002608 "hippocampal neuron") EquivalentClasses(obo:CL_0002608 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002421))) +SubClassOf(obo:CL_0002608 obo:CL_0010012) +SubClassOf(obo:CL_0002608 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002421)) # Class: obo:CL_0002609 (obsolete neuron of cerebral cortex) @@ -21956,6 +24845,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002610 "2011-03-06T07:42:06Z" AnnotationAssertion(rdfs:label obo:CL_0002610 "raphe nuclei neuron") EquivalentClasses(obo:CL_0002610 ObjectIntersectionOf(obo:CL_0000117 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0004684))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002610 obo:CL_0000117) +SubClassOf(obo:CL_0002610 obo:CL_2000029) +SubClassOf(obo:CL_0002610 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0004684)) # Class: obo:CL_0002611 (neuron of the dorsal spinal cord) @@ -21965,6 +24856,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002611 "2011-03-06T07:43:34Z" AnnotationAssertion(rdfs:label obo:CL_0002611 "neuron of the dorsal spinal cord") EquivalentClasses(obo:CL_0002611 ObjectIntersectionOf(obo:CL_0000117 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002256))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002611 obo:CL_0000117) +SubClassOf(obo:CL_0002611 obo:CL_2000029) +SubClassOf(obo:CL_0002611 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002256)) # Class: obo:CL_0002612 (neuron of the ventral spinal cord) @@ -21974,6 +24867,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002612 "2011-03-06T07:46:03Z" AnnotationAssertion(rdfs:label obo:CL_0002612 "neuron of the ventral spinal cord") EquivalentClasses(obo:CL_0002612 ObjectIntersectionOf(obo:CL_0000117 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002257))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002612 obo:CL_0000117) +SubClassOf(obo:CL_0002612 obo:CL_2000029) +SubClassOf(obo:CL_0002612 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002257)) # Class: obo:CL_0002613 (striatum neuron) @@ -21982,7 +24877,8 @@ AnnotationAssertion(terms:contributor obo:CL_0002613 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0002621 "2011-03-14T12:46:28Z") AnnotationAssertion(rdfs:label obo:CL_0002621 "gingival epithelial cell") EquivalentClasses(obo:CL_0002621 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001949))) +SubClassOf(obo:CL_0002621 obo:CL_0002251) +SubClassOf(obo:CL_0002621 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001949)) # Class: obo:CL_0002622 (prostate stromal cell) @@ -22084,6 +24990,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0002622 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0002622 "prostate stromal cell") EquivalentClasses(obo:CL_0002622 ObjectIntersectionOf(obo:CL_0000499 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002367))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002622 obo:CL_0000499) +SubClassOf(obo:CL_0002622 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002367)) # Class: obo:CL_0002623 (acinar cell of salivary gland) @@ -22094,6 +25001,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0002623 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0002623 "acinar cell of salivary gland") EquivalentClasses(obo:CL_0002623 ObjectIntersectionOf(obo:CL_0000622 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001044))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002623 obo:CL_0000622) +SubClassOf(obo:CL_0002623 obo:CL_1001596) # Class: obo:CL_0002624 (paneth cell of the appendix) @@ -22103,6 +25011,7 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002624 "2011-03-15T09:38:18Z" AnnotationAssertion(rdfs:label obo:CL_0002624 "paneth cell of the appendix") EquivalentClasses(obo:CL_0002624 ObjectIntersectionOf(obo:CL_0000510 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001154))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002624 obo:CL_0000510) +SubClassOf(obo:CL_0002624 obo:CL_1001585) # Class: obo:CL_0002625 (seminiferous tubule epithelial cell) @@ -22111,6 +25020,7 @@ AnnotationAssertion(terms:contributor obo:CL_0002625 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0002631 "2011-06-21T12:28:55Z") AnnotationAssertion(rdfs:label obo:CL_0002631 "epithelial cell of upper respiratory tract") EquivalentClasses(obo:CL_0002631 ObjectIntersectionOf(obo:CL_0002368 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001557))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002631 obo:CL_0002368) +SubClassOf(obo:CL_0002631 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001557)) # Class: obo:CL_0002632 (epithelial cell of lower respiratory tract) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0002632 "Any respiratory epithelial cell that is part of some lower respiratory tract.") AnnotationAssertion(terms:contributor obo:CL_0002632 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0002632 "2011-06-21T12:29:31Z") AnnotationAssertion(oboInOwl:inSubset obo:CL_0002632 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0002632 "epithelial cell of lower respiratory tract") EquivalentClasses(obo:CL_0002632 ObjectIntersectionOf(obo:CL_0002368 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001558))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002632 obo:CL_0002368) +SubClassOf(obo:CL_0002632 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001558)) # Class: obo:CL_0002633 (respiratory basal cell) @@ -22197,6 +25114,8 @@ AnnotationAssertion(terms:contributor obo:CL_0002634 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0002672 "2011-08-16T02:38:01Z") AnnotationAssertion(rdfs:label obo:CL_0002672 "retinal progenitor cell") +SubClassOf(obo:CL_0002672 obo:BFO_0000002) SubClassOf(obo:CL_0002672 obo:CL_0000048) SubClassOf(obo:CL_0002672 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000133)) @@ -22577,6 +25504,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002673 "2011-08-16T03:10:02Z" AnnotationAssertion(oboInOwl:inSubset obo:CL_0002673 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0002673 "tongue muscle cell") EquivalentClasses(obo:CL_0002673 ObjectIntersectionOf(obo:CL_0008002 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000378))) +SubClassOf(obo:CL_0002673 obo:CL_0008002) +SubClassOf(obo:CL_0002673 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000378)) # Class: obo:CL_0002674 (H minus) @@ -22604,6 +25533,7 @@ AnnotationAssertion(terms:contributor obo:CL_0002676 ) oboInOwl:hasDbXref obo:CL_0005000 "ZFA:0000778") AnnotationAssertion(rdfs:comment obo:CL_0005000 "Is_a interneuron, part_of UBERON:0002240.") AnnotationAssertion(rdfs:label obo:CL_0005000 "spinal cord interneuron") EquivalentClasses(obo:CL_0005000 ObjectIntersectionOf(obo:CL_0000099 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002240))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0005000 obo:CL_0000402) +SubClassOf(obo:CL_0005000 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002240)) # Class: obo:CL_0005001 (iridoblast) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CL:CVS") obo:IAO_0000115 obo:CL_0005001 "A non-terminally differentiated cell that originates from the neural crest and differentiates into an iridophore.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0005001 "ZFA:0005328") AnnotationAssertion(rdfs:comment obo:CL_0005001 "Derived from UBERON:0002342 neural crest.") AnnotationAssertion(rdfs:label obo:CL_0005001 "iridoblast") SubClassOf(obo:CL_0005001 obo:CL_0000055) +SubClassOf(obo:CL_0005001 obo:CL_0011026) SubClassOf(obo:CL_0005001 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000333)) # Class: obo:CL_0005002 (xanthoblast) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CL:CVS") obo:IAO_0000115 obo:CL_0005002 "A non-terminally differentiated cell that differentiates into a xanthophore.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0005002 "ZFA:0005245") AnnotationAssertion(rdfs:label obo:CL_0005002 "xanthoblast") SubClassOf(obo:CL_0005002 obo:CL_0000055) +SubClassOf(obo:CL_0005002 obo:CL_0011026) SubClassOf(obo:CL_0005002 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000333)) # Class: obo:CL_0005003 (leucoblast) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CL:CVS") obo:IAO_0000115 obo:CL_0005003 "A non-terminally differentiated cell that originates from the neural crest and differentiates into a leucophore.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0005003 "ZFA:0005329") AnnotationAssertion(rdfs:label obo:CL_0005003 "leucoblast") SubClassOf(obo:CL_0005003 obo:CL_0000055) +SubClassOf(obo:CL_0005003 obo:CL_0011026) SubClassOf(obo:CL_0005003 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000333)) # Class: obo:CL_0005004 (pigment erythroblast) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CL:CVS") obo:IAO_0000115 obo:CL_0005004 "A non-terminally differentiated cell that originates from the neural crest and differentiates into an erythrophore.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0005004 "ZFA:0005331") AnnotationAssertion(rdfs:label obo:CL_0005004 "pigment erythroblast") SubClassOf(obo:CL_0005004 obo:CL_0000055) +SubClassOf(obo:CL_0005004 obo:CL_0011026) SubClassOf(obo:CL_0005004 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000333)) # Class: obo:CL_0005005 (cyanoblast) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CL:CVS") obo:IAO_0000115 obo:CL_0005005 "A non-terminally differentiated cell that originates from the neural crest and differentiates into a cyanophore.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0005005 "ZFA:0005332") AnnotationAssertion(rdfs:label obo:CL_0005005 "cyanoblast") SubClassOf(obo:CL_0005005 obo:CL_0000055) +SubClassOf(obo:CL_0005005 obo:CL_0011026) SubClassOf(obo:CL_0005005 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000333)) # Class: obo:CL_0005006 (ionocyte) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:17555741") Annotation(oboInOwl:hasDbXref "PMID:19268451") obo:IAO_0000115 obo:CL_0005006 "Specialized epithelial cells involved in the maintenance of osmotic homeostasis. They are characterized by abundant mitochondria and ion transporters. In amniotes, they are present in the renal system. In freshwater fish, ionocytes in the skin and gills help maintain osmotic homeostasis by absorbing salt from the external environment.") AnnotationAssertion(obo:RO_0002175 obo:CL_0005006 obo:NCBITaxon_9606) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0005006 "ZFA:0005323") AnnotationAssertion(oboInOwl:inSubset obo:CL_0005006 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0005006 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0005006 "ionocyte") @@ -24010,13 +26967,14 @@ SubClassOf(obo:CL_0005006 obo:CL_0000066) # Class: obo:CL_0005007 (Kolmer-Agduhr neuron) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:18680739") obo:IAO_0000115 obo:CL_0005007 "Kolmer-Agduhr neurons are ciliated GABAergic neurons that contact the central canal of the spinal cord and have ipsilateral ascending axons.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0005007 "ZFA:0005240") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0005007 "KA cell") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:15539490") oboInOwl:hasExactSynonym obo:CL_0005007 "KA interneuron") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:9634146") oboInOwl:hasExactSynonym obo:CL_0005007 "KA neuron") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0005007 "Kolmer-Agduhr cell") AnnotationAssertion(rdfs:label obo:CL_0005007 "Kolmer-Agduhr neuron") -SubClassOf(obo:CL_0005007 obo:CL_0000617) SubClassOf(obo:CL_0005007 obo:CL_0005000) +SubClassOf(obo:CL_0005007 obo:CL_0011005) # Class: obo:CL_0005008 (macular hair cell) @@ -24024,10 +26982,13 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GO:cvs") obo:IAO_0000115 obo: AnnotationAssertion(rdfs:label obo:CL_0005008 "macular hair cell") EquivalentClasses(obo:CL_0005008 ObjectIntersectionOf(obo:CL_0000202 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000054))) SubClassOf(obo:CL_0005008 obo:CL_0000202) +SubClassOf(obo:CL_0005008 obo:CL_0002374) +SubClassOf(obo:CL_0005008 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000054)) # Class: obo:CL_0005009 (renal principal cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CL:CVS") obo:IAO_0000115 obo:CL_0005009 "A cuboidal epithelial cell of the kidney which regulates sodium and potassium balance. The activity of sodium and potassium channels on the apical membrane of the cell is regulated by aldosterone and vasopressin. In mammals this cell type is located in the renal collecting duct system.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0005009 "ZFA:0005322") AnnotationAssertion(oboInOwl:inSubset obo:CL_0005009 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0005009 "renal principal cell") SubClassOf(obo:CL_0005009 obo:CL_0000075) @@ -24037,18 +26998,19 @@ SubClassOf(obo:CL_0005009 obo:CL_0002518) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CL:CVS") obo:IAO_0000115 obo:CL_0005010 "A cuboidal epithelial cell of the kidney that regulates acid/base balance.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0005010 "FMA:86560") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0005010 "ZFA:0009375") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0005010 "intercalated cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0005010 cl:cellxgene_subset) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:25632105") rdfs:comment obo:CL_0005010 "Intercalated cells are also called “mitochondria-rich cells”, reflecting the high levels of round mitochondria at their apical pole, or in their cytoplasm, a distribution that is quite different from that of other kidney tubule cells, which accumulated mitochondria around the basolateral membrane. These cells also have numerous irregular apical microvilli compared with the surrounding segment-specific cells. Intercalated cells lack a central cilium, at least in the cortex, which also differentiates them from the adjacent principal cells.") AnnotationAssertion(rdfs:label obo:CL_0005010 "renal intercalated cell") SubClassOf(obo:CL_0005010 obo:CL_0000075) SubClassOf(obo:CL_0005010 obo:CL_0002078) -SubClassOf(obo:CL_0005010 obo:CL_0002518) -SubClassOf(obo:CL_0005010 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001285)) +SubClassOf(obo:CL_0005010 obo:CL_1000449) # Class: obo:CL_0005011 (renal alpha-intercalated cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CL:CVS") obo:IAO_0000115 obo:CL_0005011 "A cuboidal epithelial cell of the kidney which secretes acid and reabsorbs base to regulate acid/base balance.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0005011 "ZFA:0009376") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:25632105") oboInOwl:hasExactSynonym obo:CL_0005011 "type A intercalated cell") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:25632105") oboInOwl:hasExactSynonym obo:CL_0005011 "type A-IC") AnnotationAssertion(oboInOwl:inSubset obo:CL_0005011 cl:cellxgene_subset) @@ -24062,23 +27024,24 @@ SubClassOf(obo:CL_0005011 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0046717)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CL:CVS") obo:IAO_0000115 obo:CL_0005012 "A ciliated epithelial cell with many cilia.") AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0005012 "multi-ciliated cell"@en) AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0005012 "multiciliated cell"@en) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0005012 "ZFA:0005242") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0005012 "multiciliated epithelial cell"@en) AnnotationAssertion(Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_0005012 "MCC"@en) AnnotationAssertion(oboInOwl:inSubset obo:CL_0005012 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0005012 "multi-ciliated epithelial cell") -SubClassOf(obo:CL_0005012 obo:CL_0000066) -SubClassOf(obo:CL_0005012 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0005929)) +SubClassOf(obo:CL_0005012 obo:CL_0000067) # Class: obo:CL_0005013 (single ciliated epithelial cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CL:CVS") obo:IAO_0000115 obo:CL_0005013 "A ciliated epithelial cell with a single cilium.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0005013 "ZFA:0005243") AnnotationAssertion(rdfs:label obo:CL_0005013 "single ciliated epithelial cell") -SubClassOf(obo:CL_0005013 obo:CL_0000066) -SubClassOf(obo:CL_0005013 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0005929)) +SubClassOf(obo:CL_0005013 obo:CL_0000067) # Class: obo:CL_0005014 (auditory epithelial supporting cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CL:CVS") Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0005014 "A non-sensory cell that extends from the basement membrane to the apical surface of the auditory epithelium and provides support for auditory hair cells.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0005014 "ZFA:0005244") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0005014 "auditory epithelial support cell") AnnotationAssertion(rdfs:label obo:CL_0005014 "auditory epithelial supporting cell") SubClassOf(obo:CL_0005014 obo:CL_0000630) @@ -24109,13 +27072,17 @@ AnnotationAssertion(owl:deprecated obo:CL_0005017 "true"^^xsd:boolean) # Class: obo:CL_0005018 (ghrelin secreting cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CL:curator") obo:IAO_0000115 obo:CL_0005018 "A cell that secretes ghrelin, the peptide hormone that stimulates hunger.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0005018 "ZFA:0005599") AnnotationAssertion(rdfs:label obo:CL_0005018 "ghrelin secreting cell") EquivalentClasses(obo:CL_0005018 ObjectIntersectionOf(obo:CL_0000151 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0036321))) +SubClassOf(obo:CL_0005018 obo:CL_0000167) +SubClassOf(obo:CL_0005018 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0036321)) # Class: obo:CL_0005019 (pancreatic epsilon cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:14970313") obo:IAO_0000115 obo:CL_0005019 "Ghrelin secreting cells found in the endocrine pancreas.") AnnotationAssertion(obo:RO_0002175 obo:CL_0005019 obo:NCBITaxon_9606) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0005019 "ZFA:0005598") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0005019 "pancreatic E cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0005019 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0005019 core:human_reference_atlas) @@ -24123,22 +27090,27 @@ AnnotationAssertion(rdfs:comment obo:CL_0005019 "In mammals the endocrine pancre AnnotationAssertion(rdfs:label obo:CL_0005019 "pancreatic epsilon cell") EquivalentClasses(obo:CL_0005019 ObjectIntersectionOf(obo:CL_0008024 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0036321))) SubClassOf(obo:CL_0005019 obo:CL_0005018) +SubClassOf(obo:CL_0005019 obo:CL_0008024) # Class: obo:CL_0005020 (lymphangioblast) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CL:CVS") obo:IAO_0000115 obo:CL_0005020 "Lymphatic progenitor cells.") AnnotationAssertion(terms:contributor obo:CL_0005020 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0005020 "2012-01-12T04:44:34Z") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0005020 "ZFA:0009393") AnnotationAssertion(rdfs:comment obo:CL_0005020 "Usually express Prox1, or prox1b.") AnnotationAssertion(rdfs:label obo:CL_0005020 "lymphangioblast") EquivalentClasses(obo:CL_0005020 ObjectIntersectionOf(obo:CL_0000048 ObjectSomeValuesFrom(obo:RO_0002220 obo:UBERON_0004536))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0005020 obo:CL_0000048) +SubClassOf(obo:CL_0005020 obo:CL_4033054) +SubClassOf(obo:CL_0005020 ObjectSomeValuesFrom(obo:RO_0002220 obo:UBERON_0004536)) # Class: obo:CL_0005021 (mesenchymal lymphangioblast) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:15624319") Annotation(oboInOwl:hasDbXref "PMID:18430230") obo:IAO_0000115 obo:CL_0005021 "Mesenchymal derived lymphatic progenitor cells that give rise to the superficial lymphatics.") AnnotationAssertion(terms:contributor obo:CL_0005021 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0005021 "2012-01-12T05:01:22Z") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0005021 "ZFA:0009394") AnnotationAssertion(oboInOwl:inSubset obo:CL_0005021 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0005021 "mesenchymal lymphangioblast") SubClassOf(obo:CL_0005021 obo:CL_0000134) @@ -24149,32 +27121,41 @@ SubClassOf(obo:CL_0005021 obo:CL_0005020) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CL:CVS") obo:IAO_0000115 obo:CL_0005022 "Lymphatic progenitor cells, derived from the veins, that give rise to lymphatic endothelial cells.") AnnotationAssertion(terms:contributor obo:CL_0005022 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0005022 "2012-01-12T05:21:09Z") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0005022 "ZFA:0009395") AnnotationAssertion(oboInOwl:hasNarrowSynonym obo:CL_0005022 "parachordal lymphangioblast") AnnotationAssertion(oboInOwl:inSubset obo:CL_0005022 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0005022 "vascular lymphangioblast") EquivalentClasses(obo:CL_0005022 ObjectIntersectionOf(obo:CL_0005020 ObjectSomeValuesFrom(obo:RO_0002220 obo:UBERON_0001638))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0005022 obo:CL_0005020) +SubClassOf(obo:CL_0005022 ObjectSomeValuesFrom(obo:RO_0002220 obo:UBERON_0001638)) # Class: obo:CL_0005023 (branchiomotor neuron) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ZFIN:CVS") obo:IAO_0000115 obo:CL_0005023 "Cranial motor neuron which innervates muscles derived from the branchial (pharyngeal) arches.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0005023 "PMID:14699587") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0005023 "ZFA:0005731") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0005023 "branchi motor neuron") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0005023 "special visceral motor neuron") AnnotationAssertion(rdfs:label obo:CL_0005023 "branchiomotor neuron"@en) EquivalentClasses(obo:CL_0005023 ObjectIntersectionOf(obo:CL_0015000 ObjectSomeValuesFrom(obo:RO_0002130 obo:UBERON_0004164))) +SubClassOf(obo:CL_0005023 obo:CL_0015000) +SubClassOf(obo:CL_0005023 ObjectSomeValuesFrom(obo:RO_0002130 obo:UBERON_0004164)) # Class: obo:CL_0005024 (somatomotor neuron) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ZFIN:CVS") obo:IAO_0000115 obo:CL_0005024 "A motor neuron that innervates a skeletal muscle. These motor neurons are all excitatory and cholinergic.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0005024 "ZFA:0005733") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0005024 "somatic motor neuron") AnnotationAssertion(rdfs:label obo:CL_0005024 "somatomotor neuron"@en) EquivalentClasses(obo:CL_0005024 ObjectIntersectionOf(obo:CL_0000100 ObjectSomeValuesFrom(obo:RO_0002120 obo:CL_0008002))) -SubClassOf(obo:CL_0005024 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0014055)) +SubClassOf(obo:CL_0005024 obo:CL_0000100) +SubClassOf(obo:CL_0005024 obo:CL_0000108) +SubClassOf(obo:CL_0005024 ObjectSomeValuesFrom(obo:RO_0002120 obo:CL_0008002)) # Class: obo:CL_0005025 (visceromotor neuron) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ZFIN:CVS") obo:IAO_0000115 obo:CL_0005025 "A motor neuron that synapses to parasympathetic neurons that innervate tear glands, sweat glands, and the smooth muscles and glands of the pulmonary, cardiovascular, and gastrointestinal systems.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0005025 "ZFA:0005732") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0005025 "general visceral motor neuron") AnnotationAssertion(oboInOwl:inSubset obo:CL_0005025 cl:cellxgene_subset) AnnotationAssertion(rdfs:comment obo:CL_0005025 "Note that these neurons do not synapse directly onto muscles") @@ -24197,6 +27178,7 @@ AnnotationAssertion(terms:contributor obo:CL_0007000 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0007004 "2012-06-27T08:27:35Z") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0007004 "ZFA:0007084") AnnotationAssertion(rdfs:label obo:CL_0007004 "premigratory neural crest cell") +SubClassOf(obo:CL_0007004 obo:BFO_0000002) SubClassOf(obo:CL_0007004 obo:CL_0011012) SubClassOf(obo:CL_0007004 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002342)) SubClassOf(obo:CL_0007004 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000133)) @@ -24248,6 +27233,7 @@ AnnotationAssertion(terms:contributor obo:CL_0007005 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0007007 "2012-06-27T09:26:37Z") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0007007 "ZFA:0005744") AnnotationAssertion(rdfs:label obo:CL_0007007 "notochordal sheath cell") SubClassOf(obo:CL_0007007 obo:CL_0007005) @@ -24297,6 +27284,9 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0007010 "osteoprogenitor cel AnnotationAssertion(oboInOwl:inSubset obo:CL_0007010 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0007010 "preosteoblast") SubClassOf(obo:CL_0007010 obo:CL_0000055) +SubClassOf(obo:CL_0007010 obo:CL_0001035) +SubClassOf(obo:CL_0007010 obo:CL_0002320) +SubClassOf(obo:CL_0007010 obo:CL_0011026) SubClassOf(obo:CL_0007010 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0008883)) SubClassOf(obo:CL_0007010 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000222)) SubClassOf(obo:CL_0007010 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000333)) @@ -24306,11 +27296,14 @@ SubClassOf(obo:CL_0007010 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000333)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CL:MAH") obo:IAO_0000115 obo:CL_0007011 "Neuron that is part of the enteric nervous system.") AnnotationAssertion(terms:contributor obo:CL_0007011 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0007011 "2012-06-28T08:20:31Z") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0007011 "ZFA:0005775") AnnotationAssertion(oboInOwl:inSubset obo:CL_0007011 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0007011 "enteric neuron") EquivalentClasses(obo:CL_0007011 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002005))) -SubClassOf(obo:CL_0007011 obo:CL_0000540) +SubClassOf(obo:CL_0007011 obo:CL_0000029) +SubClassOf(obo:CL_0007011 obo:CL_0000107) SubClassOf(obo:CL_0007011 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002005)) +SubClassOf(obo:CL_0007011 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002005)) SubClassOf(obo:CL_0007011 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002607)) # Class: obo:CL_0007012 (non-terminally differentiated odontoblast) @@ -24357,6 +27350,7 @@ AnnotationAssertion(owl:deprecated obo:CL_0007015 "true"^^xsd:boolean) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:8951054") obo:IAO_0000115 obo:CL_0007016 "Muscle precursor cell that is adjacent to the notochord and part of the presomitic mesoderm.") AnnotationAssertion(terms:contributor obo:CL_0007016 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0007016 "2012-12-30T12:43:15Z") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0007016 "ZFA:0000003") AnnotationAssertion(rdfs:comment obo:CL_0007016 "In teleosts, adaxial cells give rise to slow muscle myoblasts.") AnnotationAssertion(rdfs:label obo:CL_0007016 "adaxial cell") SubClassOf(obo:CL_0007016 obo:CL_0000680) @@ -24378,9 +27372,9 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMCID:PMC3046089") obo:IAO_00 AnnotationAssertion(terms:contributor obo:CL_0007018 ) AnnotationAssertion(rdfs:comment obo:CL_0007018 "Taxon specificity not clear -present in embryonic anurans.") AnnotationAssertion(rdfs:label obo:CL_0007018 "epidermal ciliary cell"@en) +SubClassOf(obo:CL_0007018 obo:CL_0000064) SubClassOf(obo:CL_0007018 obo:CL_0002321) SubClassOf(obo:CL_0007018 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001003)) -SubClassOf(obo:CL_0007018 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0005929)) # Class: obo:CL_0007019 (epidermal mucus secreting cell) @@ -24404,14 +27398,15 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0007021 "alarm substance sec AnnotationAssertion(Annotation(oboInOwl:hasDbXref "https://github.com/obophenotype/cell-ontology/issues/583") oboInOwl:hasExactSynonym obo:CL_0007021 "club cell (zebrafish)") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ISBN-10:0412429403") Annotation(oboInOwl:hasDbXref "https://github.com/obophenotype/cell-ontology/issues/583") oboInOwl:hasRelatedSynonym obo:CL_0007021 "club cell") AnnotationAssertion(rdfs:label obo:CL_0007021 "alarm substance cell"@en) +SubClassOf(obo:CL_0007021 obo:CL_0000151) SubClassOf(obo:CL_0007021 obo:CL_0000473) SubClassOf(obo:CL_0007021 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001003)) -SubClassOf(obo:CL_0007021 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032940)) # Class: obo:CL_0007022 (micropylar cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:18582455") Annotation(oboInOwl:hasDbXref "ZFA:0005239") obo:IAO_0000115 obo:CL_0007022 "A specialized pore forming cell of the follicle, located adjacent to the animal pole of the oocyte. The micropylar cell makes the single micropyle (pore) through the chorion through which the sperm fertilizes the egg.") AnnotationAssertion(terms:contributor obo:CL_0007022 ) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0007022 "ZFA:0005239") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0007022 "plug cell") AnnotationAssertion(rdfs:label obo:CL_0007022 "micropylar cell"@en) SubClassOf(obo:CL_0007022 obo:CL_0000000) @@ -24445,6 +27440,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0008002 "MESH:D018485") AnnotationAssertion(oboInOwl:inSubset obo:CL_0008002 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0008002 "skeletal muscle fiber"@en) EquivalentClasses(obo:CL_0008002 ObjectIntersectionOf(obo:CL_0000187 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001134) ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0030017) ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001908) ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0002478))) +SubClassOf(obo:CL_0008002 obo:CL_0000188) +SubClassOf(obo:CL_0008002 obo:CL_0002372) SubClassOf(obo:CL_0008002 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000515)) # Class: obo:CL_0008003 (somatic muscle myotube) @@ -24452,11 +27449,13 @@ SubClassOf(obo:CL_0008002 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000515)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:22274696") Annotation(oboInOwl:hasDbXref "PMID:8720463") obo:IAO_0000115 obo:CL_0008003 "A myotube that is part of some somatic muscle. Examples include arthropod somatic muscle cells.") AnnotationAssertion(rdfs:label obo:CL_0008003 "somatic muscle myotube") EquivalentClasses(obo:CL_0008003 ObjectIntersectionOf(obo:CL_0008004 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0030017) ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001908) ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0002478))) +SubClassOf(obo:CL_0008003 obo:CL_0002372) +SubClassOf(obo:CL_0008003 obo:CL_0008004) # Class: obo:CL_0008004 (somatic muscle cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:dos") obo:IAO_0000115 obo:CL_0008004 "A muscle cell that is part of some somatic muscle.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0008004 "FBbt:00005073") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0008004 "FBbt:00005073") AnnotationAssertion(rdfs:label obo:CL_0008004 "somatic muscle cell"@en) SubClassOf(obo:CL_0008004 obo:CL_0000187) @@ -24465,39 +27464,48 @@ SubClassOf(obo:CL_0008004 obo:CL_0000187) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:8720463") obo:IAO_0000115 obo:CL_0008005 "A somatic muscle cell that is oblquely striated. Examples include the somatic muscles of nematodes.") AnnotationAssertion(rdfs:label obo:CL_0008005 "obliquely striated somatic muscle cell") EquivalentClasses(obo:CL_0008005 ObjectIntersectionOf(obo:CL_0008004 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0030017) ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001908) ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0002479))) +SubClassOf(obo:CL_0008005 obo:CL_0000228) +SubClassOf(obo:CL_0008005 obo:CL_0000444) SubClassOf(obo:CL_0008005 obo:CL_0008004) # Class: obo:CL_0008006 (muscle founder cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:22274696") obo:IAO_0000115 obo:CL_0008006 "A myoblast that detemines the properties (size, shape and attachment to the epidermis) of a `somatic muscle myotube` (CL:0008003) . It develops into a somatic muscle myotube via fusion with `fusion component myoblasts` (CL:0000621).") AnnotationAssertion(rdfs:label obo:CL_0008006 "muscle founder cell"@en) -SubClassOf(obo:CL_0008006 obo:CL_0000056) -SubClassOf(obo:CL_0008006 ObjectSomeValuesFrom(obo:RO_0002203 obo:CL_0008003)) +SubClassOf(obo:CL_0008006 obo:CL_0008018) # Class: obo:CL_0008007 (visceral muscle cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:dos") obo:IAO_0000115 obo:CL_0008007 "A muscle cell that is part of some visceral muscle.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0008007 "FBbt:00005070") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0008007 "FBbt:00005070") AnnotationAssertion(rdfs:label obo:CL_0008007 "visceral muscle cell"@en) EquivalentClasses(obo:CL_0008007 ObjectIntersectionOf(obo:CL_0000187 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_8600004))) +SubClassOf(obo:CL_0008007 obo:CL_0000187) +SubClassOf(obo:CL_0008007 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_8600004)) # Class: obo:CL_0008008 (striated visceral muscle cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:dos") obo:IAO_0000115 obo:CL_0008008 "A visceral muscle cell that is striated. Examples include the visceral muscle cells of arhtropods.") AnnotationAssertion(rdfs:label obo:CL_0008008 "striated visceral muscle cell"@en) EquivalentClasses(obo:CL_0008008 ObjectIntersectionOf(obo:CL_0008007 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0030017) ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001410)))) +SubClassOf(obo:CL_0008008 obo:CL_0000737) +SubClassOf(obo:CL_0008008 obo:CL_0008007) # Class: obo:CL_0008009 (transversely striated visceral muscle cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:dos") obo:IAO_0000115 obo:CL_0008009 "A visceral muscle that is transversely striated. Examples include the visceral muscle cells of arthropods.") AnnotationAssertion(rdfs:label obo:CL_0008009 "transversely striated visceral muscle cell"@en) EquivalentClasses(obo:CL_0008009 ObjectIntersectionOf(obo:CL_0008007 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0030017) ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0002478)))) +SubClassOf(obo:CL_0008009 obo:CL_0008008) +SubClassOf(obo:CL_0008009 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0002478)) # Class: obo:CL_0008010 (cranial somatomotor neuron) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:14699587") obo:IAO_0000115 obo:CL_0008010 "A cranial motor neuron whose soma is located in the midbrain andor hindbrain and which innervates the skeletal muscles of the eye or tongue.") AnnotationAssertion(rdfs:label obo:CL_0008010 "cranial somatomotor neuron") EquivalentClasses(obo:CL_0008010 ObjectIntersectionOf(obo:CL_0015000 ObjectSomeValuesFrom(obo:RO_0002120 obo:CL_0008002))) +SubClassOf(obo:CL_0008010 obo:CL_0005024) +SubClassOf(obo:CL_0008010 obo:CL_0015000) # Class: obo:CL_0008011 (skeletal muscle satellite stem cell) @@ -24505,6 +27513,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:23303905") obo:IAO_00001 AnnotationAssertion(oboInOwl:inSubset obo:CL_0008011 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0008011 "skeletal muscle satellite stem cell") EquivalentClasses(obo:CL_0008011 ObjectIntersectionOf(obo:CL_0000594 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001400) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0017145))) +SubClassOf(obo:CL_0008011 obo:CL_0000035) +SubClassOf(obo:CL_0008011 obo:CL_0000594) DisjointClasses(obo:CL_0008011 obo:CL_0008020) # Class: obo:CL_0008012 (quiescent skeletal muscle satellite cell) @@ -24518,7 +27528,10 @@ SubClassOf(obo:CL_0008012 obo:CL_0000594) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:14699587") obo:IAO_0000115 obo:CL_0008013 "A visceromotor motor neuron whose soma is located in the hindbrain, and which synapses to parasympathetic neurons that innervate tear glands, sweat glands, and the smooth muscles of the head.") AnnotationAssertion(rdfs:label obo:CL_0008013 "cranial visceromotor neuron"@en) EquivalentClasses(obo:CL_0008013 ObjectIntersectionOf(obo:CL_0005025 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002028))) +SubClassOf(obo:CL_0008013 obo:CL_0005025) SubClassOf(obo:CL_0008013 obo:CL_0015000) +SubClassOf(obo:CL_0008013 obo:CL_2000029) +SubClassOf(obo:CL_0008013 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002028)) # Class: obo:CL_0008014 (obsolete excitatory motor neuron) @@ -24550,12 +27563,16 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:23303905") oboInOwl:hasB AnnotationAssertion(rdfs:comment obo:CL_0008017 "The vast majority of these cells develop from skeletal muscle satellite cells, although there are some reports of other origins.") AnnotationAssertion(rdfs:label obo:CL_0008017 "adult skeletal muscle myoblast") EquivalentClasses(obo:CL_0008017 ObjectIntersectionOf(obo:CL_0000056 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001134) ObjectSomeValuesFrom(obo:RO_0002203 obo:CL_0008002))) +SubClassOf(obo:CL_0008017 obo:CL_0000188) +SubClassOf(obo:CL_0008017 obo:CL_0000515) # Class: obo:CL_0008018 (somatic muscle myoblast) AnnotationAssertion(obo:IAO_0000115 obo:CL_0008018 "A myoblast that is commited to developing into a somatic muscle.") AnnotationAssertion(rdfs:label obo:CL_0008018 "somatic muscle myoblast") EquivalentClasses(obo:CL_0008018 ObjectIntersectionOf(obo:CL_0000056 ObjectSomeValuesFrom(obo:RO_0002203 obo:CL_0008003))) +SubClassOf(obo:CL_0008018 obo:CL_0000056) +SubClassOf(obo:CL_0008018 ObjectSomeValuesFrom(obo:RO_0002203 obo:CL_0008003)) # Class: obo:CL_0008019 (mesenchymal cell) @@ -24565,7 +27582,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0008019 "mesenchyme cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0008019 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0008019 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0008019 "mesenchymal cell") -SubClassOf(obo:CL_0008019 obo:CL_0000000) +SubClassOf(obo:CL_0008019 obo:CL_0000219) SubClassOf(obo:CL_0008019 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003104)) SubClassOf(obo:CL_0008019 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0016477)) @@ -24578,14 +27595,20 @@ SubClassOf(obo:CL_0008020 ObjectSomeValuesFrom(obo:RO_0002203 obo:CL_0008017)) # Class: obo:CL_0008021 (anterior lateral line ganglion neuron) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0008021 "Any neuron that has its soma located in some anterior lateral line ganglion.") AnnotationAssertion(rdfs:label obo:CL_0008021 "anterior lateral line ganglion neuron") EquivalentClasses(obo:CL_0008021 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_2001391))) +SubClassOf(obo:CL_0008021 obo:CL_2000031) +SubClassOf(obo:CL_0008021 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_2001391)) # Class: obo:CL_0008022 (endocardial cushion cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:18816864") obo:IAO_0000115 obo:CL_0008022 "A mesenchymal cell of the endocardial cushion. These cells develop via an epithelial to mesenchymal transition when endocardial cells break cell-to-cell contacts and migrate into the cardiac jelly. Cells from this population form the heart septa and valves.") AnnotationAssertion(rdfs:label obo:CL_0008022 "endocardial cushion cell") EquivalentClasses(obo:CL_0008022 ObjectIntersectionOf(obo:CL_0000569 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002062))) +SubClassOf(obo:CL_0008022 obo:CL_0000569) +SubClassOf(obo:CL_0008022 obo:CL_0002494) +SubClassOf(obo:CL_0008022 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002062)) # Class: obo:CL_0008023 (obsolete cardiac fibroblast) @@ -24602,20 +27625,27 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0008024 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0008024 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0008024 "pancreatic endocrine cell") EquivalentClasses(obo:CL_0008024 ObjectIntersectionOf(obo:CL_0000163 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001264))) -SubClassOf(obo:CL_0008024 obo:CL_0000163) +SubClassOf(obo:CL_0008024 obo:CL_0000083) +SubClassOf(obo:CL_0008024 obo:CL_0000164) # Class: obo:CL_0008025 (noradrenergic neuron) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:dos") obo:IAO_0000115 obo:CL_0008025 "A neuron that release noradrenaline (noriphinephrine) as a neurotransmitter.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0008025 "ZFA:0005873") AnnotationAssertion(rdfs:label obo:CL_0008025 "noradrenergic neuron") EquivalentClasses(obo:CL_0008025 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061533))) +SubClassOf(obo:CL_0008025 obo:CL_0000459) +SubClassOf(obo:CL_0008025 obo:CL_4033050) +SubClassOf(obo:CL_0008025 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061533)) # Class: obo:CL_0008026 (open tracheal system tracheocyte) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:dos") obo:IAO_0000115 obo:CL_0008026 "An epithelial cell that is part of the epithelium of a tracheal tube in an open tracheal system, such as that found in insects.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0008026 "FBbt:00005038") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0008026 "FBbt:00005038") AnnotationAssertion(rdfs:label obo:CL_0008026 "open tracheal system tracheocyte") EquivalentClasses(obo:CL_0008026 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003127))) +SubClassOf(obo:CL_0008026 obo:CL_0000066) +SubClassOf(obo:CL_0008026 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003127)) # Class: obo:CL_0008027 (rod bipolar cell (sensu Mus)) @@ -24627,10 +27657,13 @@ SubClassOf(obo:CL_0008027 obo:CL_0000751) # Class: obo:CL_0008028 (visual system neuron) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0008028 "Any neuron that is capable of part of some visual perception.") AnnotationAssertion(terms:contributor obo:CL_0008028 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0008028 "2017-07-09T19:12:36Z"^^xsd:dateTime) AnnotationAssertion(rdfs:label obo:CL_0008028 "visual system neuron") EquivalentClasses(obo:CL_0008028 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002216 obo:GO_0007601))) +SubClassOf(obo:CL_0008028 obo:CL_0000540) +SubClassOf(obo:CL_0008028 ObjectSomeValuesFrom(obo:RO_0002216 obo:GO_0007601)) # Class: obo:CL_0008029 (obsolete inhibitory neuron) @@ -24657,17 +27690,20 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0008031 "cerebral cortex int AnnotationAssertion(oboInOwl:inSubset obo:CL_0008031 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0008031 "cortical interneuron"@en) EquivalentClasses(obo:CL_0008031 ObjectIntersectionOf(obo:CL_0000099 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000956))) +SubClassOf(obo:CL_0008031 obo:CL_0000402) +SubClassOf(obo:CL_0008031 obo:CL_0010012) # Class: obo:CL_0008032 (rosehip neuron) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1038/s41593-018-0205-2") obo:IAO_0000115 obo:CL_0008032 "A GABAergic interneuron in human cortical layer 1 that has large rosehip-shaped axonal boutons and compact arborization.") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1038/s41593-018-0205-2") rdfs:comment obo:CL_0008032 "A rosehip cell has been shown to have an immunohistochemical profile GAD1+CCK+, CNR1–SST–CALB2–PVALB– that matches a single transcriptomically defined cell type whose specific molecular marker signature is not seen in mouse cortex.") AnnotationAssertion(rdfs:label obo:CL_0008032 "rosehip neuron"@en) -SubClassOf(obo:CL_0008032 obo:CL_0000099) +SubClassOf(obo:CL_0008032 obo:BFO_0000002) +SubClassOf(obo:CL_0008032 obo:CL_0000255) +SubClassOf(obo:CL_0008032 obo:CL_0010011) SubClassOf(obo:CL_0008032 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000005110) ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000007785))) SubClassOf(obo:CL_0008032 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0005390)) SubClassOf(obo:CL_0008032 ObjectSomeValuesFrom(obo:RO_0002160 obo:NCBITaxon_9606)) -SubClassOf(obo:CL_0008032 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061534)) SubClassOf(obo:CL_0008032 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000011467)) # Class: obo:CL_0008033 (decidual pericyte) @@ -24679,7 +27715,9 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0008033 "decidual perivascul AnnotationAssertion(oboInOwl:inSubset obo:CL_0008033 cl:added_for_HCA) AnnotationAssertion(rdfs:label obo:CL_0008033 "decidual pericyte"@en) EquivalentClasses(obo:CL_0008033 ObjectIntersectionOf(obo:CL_0000669 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002450))) -SubClassOf(obo:CL_0008033 obo:CL_0000669) +SubClassOf(obo:CL_0008033 obo:CL_0000349) +SubClassOf(obo:CL_0008033 obo:CL_2000078) +SubClassOf(obo:CL_0008033 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002450)) # Class: obo:CL_0008034 (mural cell) @@ -24687,6 +27725,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "Wiki:Mural_cell&oldid=9306031 AnnotationAssertion(obo:RO_0002175 obo:CL_0008034 obo:NCBITaxon_9606) AnnotationAssertion(terms:contributor obo:CL_0008034 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0008034 "2020-02-29T17:33:55Z"^^xsd:dateTime) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0008034 "ZFA:0005944") AnnotationAssertion(oboInOwl:inSubset obo:CL_0008034 cl:added_for_HCA) AnnotationAssertion(oboInOwl:inSubset obo:CL_0008034 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0008034 core:human_reference_atlas) @@ -24695,11 +27734,14 @@ SubClassOf(obo:CL_0008034 obo:CL_4033054) # Class: obo:CL_0008035 (microcirculation associated smooth muscle cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0008035 "Any vascular associated smooth muscle cell that is part of some microcirculatory vessel.") AnnotationAssertion(terms:contributor obo:CL_0008035 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0008035 "2020-02-29T17:37:00Z"^^xsd:dateTime) AnnotationAssertion(rdfs:label obo:CL_0008035 "microcirculation associated smooth muscle cell"@en) EquivalentClasses(obo:CL_0008035 ObjectIntersectionOf(obo:CL_0000359 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0010523))) +SubClassOf(obo:CL_0008035 obo:CL_0000359) SubClassOf(obo:CL_0008035 obo:CL_0008034) +SubClassOf(obo:CL_0008035 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0010523)) # Class: obo:CL_0008036 (extravillous trophoblast) @@ -24743,8 +27785,8 @@ AnnotationAssertion(terms:contributor obo:CL_0008039 ) AnnotationAssertion(terms:date obo:CL_0009082 "2021-11-25T09:30:45Z"^^xsd:dateTime) -AnnotationAssertion(oboInOwl:inSubset obo:CL_0009082 core:human_reference_atlas) AnnotationAssertion(rdfs:comment obo:CL_0009082 "There is growing evidence that molecular markers characterizing double negative thymocytes are different across species, especially in human versus mouse thymus. This term is restricted for use with human data.") AnnotationAssertion(rdfs:label obo:CL_0009082 "committed double negative thymocyte (Homo sapiens)") SubClassOf(obo:CL_0009082 obo:CL_0002489) @@ -25690,6 +28869,8 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0009084 pato:location_grouping) AnnotationAssertion(oboInOwl:inSubset obo:CL_0009084 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0009084 "epithelial cell of endometrial gland") EquivalentClasses(obo:CL_0009084 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002451))) +SubClassOf(obo:CL_0009084 obo:CL_0000066) +SubClassOf(obo:CL_0009084 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002451)) # Class: obo:CL_0009085 (colony forming unit – Hill cell) @@ -25711,6 +28892,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0009086 pato:location_grouping) AnnotationAssertion(oboInOwl:inSubset obo:CL_0009086 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0009086 "endothelial cell of respiratory system lymphatic vessel") EquivalentClasses(obo:CL_0009086 ObjectIntersectionOf(obo:CL_0000115 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003456))) +SubClassOf(obo:CL_0009086 obo:CL_0000115) SubClassOf(obo:CL_0009086 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003529)) # Class: obo:CL_0009087 (fused extravillous trophoblast) @@ -25745,6 +28927,8 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0009089 pato:location_grouping) AnnotationAssertion(oboInOwl:inSubset obo:CL_0009089 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0009089 "lung pericyte") EquivalentClasses(obo:CL_0009089 ObjectIntersectionOf(obo:CL_0000669 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002048))) +SubClassOf(obo:CL_0009089 obo:CL_0000669) +SubClassOf(obo:CL_0009089 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002048)) # Class: obo:CL_0009090 (endothelial colony forming cell) @@ -25764,6 +28948,7 @@ AnnotationAssertion(terms:date obo:CL_0009091 "2022-02-18T14:09:25Z"^^xsd:dateTi AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009091 "stem Leydig cell") AnnotationAssertion(rdfs:label obo:CL_0009091 "Leydig stem cell") SubClassOf(obo:CL_0009091 obo:CL_0000034) +SubClassOf(obo:CL_0009091 obo:CL_4030031) SubClassOf(obo:CL_0009091 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005212)) # Class: obo:CL_0009092 (endothelial cell of placenta) @@ -25777,6 +28962,8 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0009092 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0009092 pato:location_grouping) AnnotationAssertion(rdfs:label obo:CL_0009092 "endothelial cell of placenta") EquivalentClasses(obo:CL_0009092 ObjectIntersectionOf(obo:CL_0000115 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001987))) +SubClassOf(obo:CL_0009092 obo:CL_0000115) +SubClassOf(obo:CL_0009092 obo:CL_0002577) # Class: obo:CL_0009093 (smooth muscle cell of placenta) @@ -25788,6 +28975,8 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009093 "placental smooth mu AnnotationAssertion(oboInOwl:inSubset obo:CL_0009093 pato:location_grouping) AnnotationAssertion(rdfs:label obo:CL_0009093 "smooth muscle cell of placenta") EquivalentClasses(obo:CL_0009093 ObjectIntersectionOf(obo:CL_0000192 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001987))) +SubClassOf(obo:CL_0009093 obo:CL_0000192) +SubClassOf(obo:CL_0009093 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001987)) # Class: obo:CL_0009094 (endothelial cell of hepatic portal vein) @@ -25799,6 +28988,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0009094 "EFO:0010704") AnnotationAssertion(oboInOwl:inSubset obo:CL_0009094 pato:location_grouping) AnnotationAssertion(rdfs:label obo:CL_0009094 "endothelial cell of hepatic portal vein") EquivalentClasses(obo:CL_0009094 ObjectIntersectionOf(obo:CL_0000115 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001639))) +SubClassOf(obo:CL_0009094 obo:CL_0000115) +SubClassOf(obo:CL_0009094 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001639)) # Class: obo:CL_0009095 (endothelial cell of uterus) @@ -25811,6 +29002,8 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0009095 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0009095 pato:location_grouping) AnnotationAssertion(rdfs:label obo:CL_0009095 "endothelial cell of uterus") EquivalentClasses(obo:CL_0009095 ObjectIntersectionOf(obo:CL_0000115 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000995))) +SubClassOf(obo:CL_0009095 obo:CL_0000115) +SubClassOf(obo:CL_0009095 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000995)) # Class: obo:CL_0009096 (esophagus non-keratinized squamous epithelial cell) @@ -25828,6 +29021,9 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009096 "nonkeratinized squa AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009096 "nonkeratinizing squamous epithelial cell of esophagus") AnnotationAssertion(rdfs:label obo:CL_0009096 "esophagus non-keratinized squamous epithelial cell") EquivalentClasses(obo:CL_0009096 ObjectIntersectionOf(obo:CL_0000238 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0006920))) +SubClassOf(obo:CL_0009096 obo:CL_0000238) +SubClassOf(obo:CL_0009096 obo:CL_0002252) +SubClassOf(obo:CL_0009096 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0006920)) # Class: obo:CL_0009097 (embryonic skeletal muscle fiber) @@ -25836,6 +29032,8 @@ AnnotationAssertion(terms:contributor obo:CL_0009097 ) oboInOwl:hasDbXref obo:CL_0011004 "ZFA:0009401") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0011004 "lens fibre cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_0011004 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0011004 core:human_reference_atlas) @@ -26275,13 +29530,13 @@ AnnotationAssertion(rdfs:comment obo:CL_0011005 "The formal and textual definiti AnnotationAssertion(rdfs:label obo:CL_0011005 "GABAergic interneuron") EquivalentClasses(obo:CL_0011005 ObjectIntersectionOf(obo:CL_0000099 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061534))) SubClassOf(obo:CL_0011005 obo:CL_0000498) +SubClassOf(obo:CL_0011005 obo:CL_0000617) # Class: obo:CL_0011006 (Lugaro cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:nv") obo:IAO_0000115 obo:CL_0011006 "An inhibitory GABAergic interneuron found in the cerebellar cortex.") AnnotationAssertion(rdfs:label obo:CL_0011006 "Lugaro cell") -SubClassOf(obo:CL_0011006 obo:CL_0011005) -SubClassOf(obo:CL_0011006 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002129)) +SubClassOf(obo:CL_0011006 obo:CL_4023057) # Class: obo:CL_0011007 (paraxial cell) @@ -26292,6 +29547,7 @@ AnnotationAssertion(oboInOwl:hasNarrowSynonym obo:CL_0011007 "presomitic mesoder AnnotationAssertion(rdfs:label obo:CL_0011007 "paraxial cell") EquivalentClasses(obo:CL_0011007 ObjectIntersectionOf(obo:CL_0000222 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003059))) SubClassOf(obo:CL_0011007 obo:CL_0000222) +SubClassOf(obo:CL_0011007 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003059)) # Class: obo:CL_0011008 (embryonic hemocyte) @@ -26332,6 +29588,9 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:30612620") obo:IAO_00001 AnnotationAssertion(terms:contributor obo:CL_0011013 ) AnnotationAssertion(rdfs:label obo:CL_0011013 "motile sperm cell") EquivalentClasses(obo:CL_0011013 ObjectIntersectionOf(obo:CL_0000019 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0097722))) +SubClassOf(obo:CL_0011013 obo:CL_0000019) +SubClassOf(obo:CL_0011013 obo:CL_0000219) +SubClassOf(obo:CL_0011013 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0097722)) # Class: obo:CL_0011014 (non-motile sperm cell) @@ -26354,6 +29613,7 @@ AnnotationAssertion(terms:contributor obo:CL_0011016 ) AnnotationAssertion(rdfs:label obo:CL_0011022 "fibroblast of skin of back") EquivalentClasses(obo:CL_0011022 ObjectIntersectionOf(obo:CL_0000057 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001068))) -SubClassOf(obo:CL_0011022 obo:CL_0000057) +SubClassOf(obo:CL_0011022 obo:CL_0002620) +SubClassOf(obo:CL_0011022 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001068)) # Class: obo:CL_0011023 (CD25+ mast cell) @@ -26414,6 +29678,8 @@ AnnotationAssertion(rdfs:comment obo:CL_0011023 "Mast cells do not normally expr AnnotationAssertion(rdfs:label obo:CL_0011023 "CD25+ mast cell") EquivalentClasses(obo:CL_0011023 ObjectIntersectionOf(obo:CL_0001063 ObjectSomeValuesFrom(obo:RO_0001000 obo:CL_0000097) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001380))) SubClassOf(obo:CL_0011023 obo:CL_0001063) +SubClassOf(obo:CL_0011023 ObjectSomeValuesFrom(obo:RO_0001000 obo:CL_0000097)) +SubClassOf(obo:CL_0011023 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001380)) # Class: obo:CL_0011024 (double negative T regulatory cell) @@ -26426,6 +29692,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0011024 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0011024 "double negative T regulatory cell") EquivalentClasses(obo:CL_0011024 ObjectIntersectionOf(obo:CL_0002489 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050777))) SubClassOf(obo:CL_0011024 obo:CL_0002489) +SubClassOf(obo:CL_0011024 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050777)) # Class: obo:CL_0011025 (exhausted T cell) @@ -26443,7 +29710,9 @@ AnnotationAssertion(terms:contributor obo:CL_0011026 ) oboInOwl:hasDbXref obo:CL_0011102 "ZFA:0005776") AnnotationAssertion(rdfs:label obo:CL_0011102 "parasympathetic neuron") SubClassOf(obo:CL_0011102 obo:CL_0000107) @@ -26530,6 +29804,7 @@ SubClassOf(obo:CL_0011102 obo:CL_0000107) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:NV") Annotation(oboInOwl:hasDbXref "isbn:0080923437") obo:IAO_0000115 obo:CL_0011103 "Sympathetic neurons are part of the sympathetic nervous system and are primarily adrenergic producing the neurotransmitter noradrenalin along with other neuropeptides.") AnnotationAssertion(obo:RO_0002175 obo:CL_0011103 obo:NCBITaxon_9606) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0011103 "ZFA:0005777") AnnotationAssertion(oboInOwl:inSubset obo:CL_0011103 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_0011103 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0011103 "sympathetic neuron") @@ -26543,7 +29818,9 @@ plexiform layer.") AnnotationAssertion(oboInOwl:inSubset obo:CL_0011104 cl:eye_upper_slim) AnnotationAssertion(rdfs:comment obo:CL_0011104 "Need to MIREOT retinal inner nuclear layer (part of)") AnnotationAssertion(rdfs:label obo:CL_0011104 "interplexiform cell") +SubClassOf(obo:CL_0011104 obo:BFO_0000002) SubClassOf(obo:CL_0011104 obo:CL_0000099) +SubClassOf(obo:CL_0011104 obo:CL_0009004) SubClassOf(obo:CL_0011104 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001791)) # Class: obo:CL_0011105 (dopamanergic interplexiform cell) @@ -26554,6 +29831,8 @@ plexiform layer, using dopamine.") AnnotationAssertion(rdfs:comment obo:CL_0011105 "This type of cell is found in Danio rerio.") AnnotationAssertion(rdfs:label obo:CL_0011105 "dopamanergic interplexiform cell") EquivalentClasses(obo:CL_0011105 ObjectIntersectionOf(obo:CL_0011104 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061527))) +SubClassOf(obo:CL_0011105 obo:CL_0000700) +SubClassOf(obo:CL_0011105 obo:CL_0011104) # Class: obo:CL_0011106 (GABAnergic interplexiform cell) @@ -26563,6 +29842,8 @@ plexiform layer using GABA.") AnnotationAssertion(rdfs:comment obo:CL_0011106 "This type of cell is found in many mammals.") AnnotationAssertion(rdfs:label obo:CL_0011106 "GABAnergic interplexiform cell") EquivalentClasses(obo:CL_0011106 ObjectIntersectionOf(obo:CL_0011104 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061534))) +SubClassOf(obo:CL_0011106 obo:CL_0011005) +SubClassOf(obo:CL_0011106 obo:CL_0011104) # Class: obo:CL_0011107 (obsolete Muller cell) @@ -26581,23 +29862,29 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0011108 "colonic epithelial AnnotationAssertion(oboInOwl:inSubset obo:CL_0011108 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0011108 "colon epithelial cell") EquivalentClasses(obo:CL_0011108 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001155))) +SubClassOf(obo:CL_0011108 obo:CL_0002253) SubClassOf(obo:CL_0011108 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000397)) # Class: obo:CL_0011109 (hypocretin-secreting neuron) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:NV") Annotation(oboInOwl:hasDbXref "PMID:23848055") obo:IAO_0000115 obo:CL_0011109 "A neuron that releases hypocretin as a neurotransmitter.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0011109 "ZFA:0005778") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0011109 "orexin") AnnotationAssertion(rdfs:label obo:CL_0011109 "hypocretin-secreting neuron") EquivalentClasses(obo:CL_0011109 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061585))) +SubClassOf(obo:CL_0011109 obo:CL_0000151) SubClassOf(obo:CL_0011109 obo:CL_0000540) +SubClassOf(obo:CL_0011109 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061585)) # Class: obo:CL_0011110 (histaminergic neuron) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:NV") Annotation(oboInOwl:hasDbXref "PMID:22677810") obo:IAO_0000115 obo:CL_0011110 "Neuron that secretes histamine.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0011110 "FBbt:00007367") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0011110 "FBbt:00007367") AnnotationAssertion(rdfs:label obo:CL_0011110 "histaminergic neuron") EquivalentClasses(obo:CL_0011110 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061538))) SubClassOf(obo:CL_0011110 obo:CL_0000540) +SubClassOf(obo:CL_0011110 obo:CL_0002274) +SubClassOf(obo:CL_0011110 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061538)) # Class: obo:CL_0011111 (gonadotropin-releasing hormone neuron) @@ -26622,15 +29909,14 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:NV") obo:IAO_0000115 obo: AnnotationAssertion(rdfs:label obo:CL_0011113 "spiral ganglion neuron") EquivalentClasses(obo:CL_0011113 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000395))) SubClassOf(obo:CL_0011113 obo:CL_0000540) +SubClassOf(obo:CL_0011113 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000395)) # Class: obo:CL_0011114 (segmented neutrophil of bone marrow) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:11138622") Annotation(oboInOwl:hasDbXref "PMID:15514007") obo:IAO_0000115 obo:CL_0011114 "A segmented neutrophilic cell of the bone marrow reserve pool that expresses CD11b (integrin alpha-M) and high levels of CD16 (low affinity immunoglobulin gamma Fc region receptor III) on its cell surface.") AnnotationAssertion(rdfs:label obo:CL_0011114 "segmented neutrophil of bone marrow") SubClassOf(obo:CL_0011114 obo:CL_0000096) -SubClassOf(obo:CL_0011114 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002371)) -SubClassOf(obo:CL_0011114 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001012)) -SubClassOf(obo:CL_0011114 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001483)) +SubClassOf(obo:CL_0011114 obo:CL_1001610) # Class: obo:CL_0011115 (precursor cell) @@ -26639,6 +29925,8 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0011115 cl:cellxgene_subset) AnnotationAssertion(rdfs:comment obo:CL_0011115 "Work is needed on GO 'cell differentiation' before it is clear whether the equivalent class definition 'native cell' that capable_of some 'cell differentiation' works. Also, may want to consider merging this with non-terminally differentiated cell.") AnnotationAssertion(rdfs:label obo:CL_0011115 "precursor cell") EquivalentClasses(obo:CL_0011115 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030154))) +SubClassOf(obo:CL_0011115 obo:CL_0000000) +SubClassOf(obo:CL_0011115 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030154)) # Class: obo:CL_0012000 (astrocyte of the forebrain) @@ -26650,6 +29938,8 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0012000 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0012000 "astrocyte of the forebrain") EquivalentClasses(obo:CL_0012000 ObjectIntersectionOf(obo:CL_0000127 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001890))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0012000 obo:CL_0000127) +SubClassOf(obo:CL_0012000 obo:CL_2000005) +SubClassOf(obo:CL_0012000 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001890)) # Class: obo:CL_0012001 (neuron of the forebrain) @@ -26661,18 +29951,23 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0012001 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0012001 "neuron of the forebrain") EquivalentClasses(obo:CL_0012001 ObjectIntersectionOf(obo:CL_0000117 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001890))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0012001 obo:CL_0000117) +SubClassOf(obo:CL_0012001 obo:CL_2000029) +SubClassOf(obo:CL_0012001 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001890)) # Class: obo:CL_0013000 (forebrain radial glial cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_0013000 "Any radial glial cell that is part of some forebrain.") AnnotationAssertion(oboInOwl:inSubset obo:CL_0013000 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_0013000 "forebrain radial glial cell"@en) EquivalentClasses(obo:CL_0013000 ObjectIntersectionOf(obo:CL_0000681 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001890))) SubClassOf(obo:CL_0013000 obo:CL_0000681) +SubClassOf(obo:CL_0013000 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001890)) # Class: obo:CL_0015000 (cranial motor neuron) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ZFIN:CVS") obo:IAO_0000115 obo:CL_0015000 "Motor neuron that innervate muscles that control eye, jaw, and facial movements of the vertebrate head and parasympathetic neurons that innervate certain glands and organs.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0015000 "PMID:14699587") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_0015000 "ZFA:0005730") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0015000 "cranial motoneuron") AnnotationAssertion(rdfs:label obo:CL_0015000 "cranial motor neuron") SubClassOf(obo:CL_0015000 obo:CL_0000100) @@ -26706,6 +30001,8 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0017002 "neuroendocrine cell AnnotationAssertion(oboInOwl:inSubset obo:CL_0017002 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0017002 "prostate neuroendocrine cell") EquivalentClasses(obo:CL_0017002 ObjectIntersectionOf(obo:CL_0000165 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000428))) +SubClassOf(obo:CL_0017002 obo:CL_0000165) +SubClassOf(obo:CL_0017002 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000428)) # Class: obo:CL_0017003 (epithelial cell of prostatic urethra) @@ -26713,6 +30010,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:30566875") obo:IAO_00001 AnnotationAssertion(oboInOwl:created_by obo:CL_0017003 ) AnnotationAssertion(rdfs:label obo:CL_0017003 "epithelial cell of prostatic urethra") EquivalentClasses(obo:CL_0017003 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001335))) +SubClassOf(obo:CL_0017003 obo:CL_1000296) +SubClassOf(obo:CL_0017003 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001335)) # Class: obo:CL_0017004 (telocyte) @@ -26773,6 +30072,8 @@ AnnotationAssertion(terms:date obo:CL_0017010 "2022-10-13T13:51:35Z"^^xsd:dateTi AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0017010 "hillock cell of urethra") AnnotationAssertion(rdfs:label obo:CL_0017010 "hillock cell of urethral epithelium") EquivalentClasses(obo:CL_0017010 ObjectIntersectionOf(obo:CL_4030024 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000057))) +SubClassOf(obo:CL_0017010 obo:CL_1000296) +SubClassOf(obo:CL_0017010 obo:CL_4030024) # Class: obo:CL_0017011 (hillock cell of prostatic urethral epithelium) @@ -26784,6 +30085,8 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0017011 "hillock cell of pro AnnotationAssertion(oboInOwl:inSubset obo:CL_0017011 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_0017011 "hillock cell of prostatic urethral epithelium") EquivalentClasses(obo:CL_0017011 ObjectIntersectionOf(obo:CL_4030024 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001335))) +SubClassOf(obo:CL_0017011 obo:CL_0017003) +SubClassOf(obo:CL_0017011 obo:CL_0017010) # Class: obo:CL_0017500 (neutrophillic cytoplasm) @@ -26792,6 +30095,8 @@ AnnotationAssertion(terms:contributor obo:CL_0017500 ) oboInOwl:hasDbXref obo:CL_1000082 "ZFA:0009370") AnnotationAssertion(rdfs:label obo:CL_1000082 "stretch receptor cell") SubClassOf(obo:CL_1000082 obo:CL_0000006) # Class: obo:CL_1000083 (stratified keratinized epithelial stem cell) +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_1000083 "ZFA:0009371") AnnotationAssertion(rdfs:label obo:CL_1000083 "stratified keratinized epithelial stem cell") SubClassOf(obo:CL_1000083 obo:CL_0000357) @@ -27104,32 +30466,47 @@ SubClassOf(obo:CL_1000085 obo:CL_0000357) # Class: obo:CL_1000090 (pronephric nephron tubule epithelial cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000090 "Any epithelial cell that is part of some pronephric nephron tubule.") AnnotationAssertion(rdfs:label obo:CL_1000090 "pronephric nephron tubule epithelial cell") EquivalentClasses(obo:CL_1000090 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005310))) +SubClassOf(obo:CL_1000090 obo:CL_1000449) +SubClassOf(obo:CL_1000090 obo:CL_1000507) +SubClassOf(obo:CL_1000090 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005310)) # Class: obo:CL_1000123 (metanephric nephron tubule epithelial cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000123 "Any epithelial cell that is part of some metanephric nephron tubule.") AnnotationAssertion(rdfs:label obo:CL_1000123 "metanephric nephron tubule epithelial cell") EquivalentClasses(obo:CL_1000123 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005146))) +SubClassOf(obo:CL_1000123 obo:CL_1000449) +SubClassOf(obo:CL_1000123 obo:CL_1000507) +SubClassOf(obo:CL_1000123 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005146)) # Class: obo:CL_1000143 (lung goblet cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000143 "Any goblet cell that is part of some lung.") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000143 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_1000143 "lung goblet cell") EquivalentClasses(obo:CL_1000143 ObjectIntersectionOf(obo:CL_0000160 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002048))) +SubClassOf(obo:CL_1000143 obo:CL_0000082) +SubClassOf(obo:CL_1000143 obo:CL_0002370) +SubClassOf(obo:CL_1000143 obo:CL_1000272) # Class: obo:CL_1000147 (cardiac valve cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:25311230") obo:IAO_0000115 obo:CL_1000147 "A cell that is part of a cardiac valve.") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_1000147 "ZFA:0009402") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:30796046") oboInOwl:hasExactSynonym obo:CL_1000147 "heart valve cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000147 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_1000147 "cardiac valve cell") EquivalentClasses(obo:CL_1000147 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000946))) +SubClassOf(obo:CL_1000147 obo:CL_0002494) +SubClassOf(obo:CL_1000147 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000946)) # Class: obo:CL_1000155 (Malpighian tubule stellate cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GO:0061330") obo:IAO_0000115 obo:CL_1000155 "A specialized epithelial secretory cell that moves chloride ions and water across the tubule epithelium.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000155 "FBbt:00005797") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_1000155 "FBbt:00005797") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBbt:00005797") oboInOwl:hasExactSynonym obo:CL_1000155 "Malpighian tubule Type II cell") AnnotationAssertion(rdfs:label obo:CL_1000155 "Malpighian tubule stellate cell") SubClassOf(obo:CL_1000155 obo:CL_0000151) @@ -27137,8 +30514,11 @@ SubClassOf(obo:CL_1000155 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000105 # Class: obo:CL_1000182 (malpighian tubule tip cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000182 "Any tip cell that is part of some Malpighian tubule.") AnnotationAssertion(rdfs:label obo:CL_1000182 "malpighian tubule tip cell") EquivalentClasses(obo:CL_1000182 ObjectIntersectionOf(obo:CL_0000423 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001054))) +SubClassOf(obo:CL_1000182 obo:CL_0000423) +SubClassOf(obo:CL_1000182 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001054)) # Class: obo:CL_1000191 (pillar cell) @@ -27153,13 +30533,20 @@ SubClassOf(obo:CL_1000191 obo:CL_0002490) # Class: obo:CL_1000217 (growth plate cartilage chondrocyte) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000217 "Any chondrocyte that is part of some growth plate cartilage.") AnnotationAssertion(rdfs:label obo:CL_1000217 "growth plate cartilage chondrocyte") EquivalentClasses(obo:CL_1000217 ObjectIntersectionOf(obo:CL_0000138 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004129))) +SubClassOf(obo:CL_1000217 obo:CL_0000138) +SubClassOf(obo:CL_1000217 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004129)) # Class: obo:CL_1000222 (stomach neuroendocrine cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000222 "Any neuroendocrine cell that is part of some stomach.") AnnotationAssertion(rdfs:label obo:CL_1000222 "stomach neuroendocrine cell") EquivalentClasses(obo:CL_1000222 ObjectIntersectionOf(obo:CL_0000165 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000945))) +SubClassOf(obo:CL_1000222 obo:CL_0000164) +SubClassOf(obo:CL_1000222 obo:CL_0000165) +SubClassOf(obo:CL_1000222 obo:CL_0002659) # Class: obo:CL_1000223 (lung neuroendocrine cell) @@ -27171,40 +30558,59 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1000223 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_1000223 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000223 "lung neuroendocrine cell") EquivalentClasses(obo:CL_1000223 ObjectIntersectionOf(obo:CL_0000165 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002048))) +SubClassOf(obo:CL_1000223 obo:CL_0000006) +SubClassOf(obo:CL_1000223 obo:CL_0000082) +SubClassOf(obo:CL_1000223 obo:CL_0000098) +SubClassOf(obo:CL_1000223 obo:CL_0000165) SubClassOf(obo:CL_1000223 obo:CL_0000206) +SubClassOf(obo:CL_1000223 obo:CL_0000458) +SubClassOf(obo:CL_1000223 obo:CL_1000272) SubClassOf(obo:CL_1000223 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0031045)) -SubClassOf(obo:CL_1000223 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001820)) SubClassOf(obo:CL_1000223 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0070483)) # Class: obo:CL_1000236 (posterior lateral line nerve glial cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000236 "Any glial cell that is part of some posterior lateral line nerve.") AnnotationAssertion(rdfs:label obo:CL_1000236 "posterior lateral line nerve glial cell") EquivalentClasses(obo:CL_1000236 ObjectIntersectionOf(obo:CL_0000125 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_2000175))) +SubClassOf(obo:CL_1000236 obo:CL_1000050) +SubClassOf(obo:CL_1000236 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_2000175)) # Class: obo:CL_1000239 (anterior lateral line nerve glial cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000239 "Any glial cell that is part of some anterior lateral line nerve.") AnnotationAssertion(rdfs:label obo:CL_1000239 "anterior lateral line nerve glial cell") EquivalentClasses(obo:CL_1000239 ObjectIntersectionOf(obo:CL_0000125 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_2000425))) +SubClassOf(obo:CL_1000239 obo:CL_1000050) +SubClassOf(obo:CL_1000239 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_2000425)) # Class: obo:CL_1000245 (posterior lateral line ganglion neuron) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000245 "Any neuron that has its soma located in some posterior lateral line ganglion.") AnnotationAssertion(rdfs:label obo:CL_1000245 "posterior lateral line ganglion neuron") EquivalentClasses(obo:CL_1000245 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_2001314))) +SubClassOf(obo:CL_1000245 obo:CL_2000031) +SubClassOf(obo:CL_1000245 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_2001314)) # Class: obo:CL_1000271 (lung ciliated cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000271 "Any ciliated cell that is part of some lung.") AnnotationAssertion(obo:RO_0002175 obo:CL_1000271 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:inSubset obo:CL_1000271 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_1000271 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000271 "lung ciliated cell") EquivalentClasses(obo:CL_1000271 ObjectIntersectionOf(obo:CL_0000064 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002048))) SubClassOf(obo:CL_1000271 obo:CL_4030034) +SubClassOf(obo:CL_1000271 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002048)) # Class: obo:CL_1000272 (lung secretory cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000272 "Any secretory cell that is part of some lung.") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000272 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_1000272 "lung secretory cell") EquivalentClasses(obo:CL_1000272 ObjectIntersectionOf(obo:CL_0000151 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002048))) +SubClassOf(obo:CL_1000272 obo:CL_0000151) +SubClassOf(obo:CL_1000272 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002048)) # Class: obo:CL_1000274 (trophectodermal cell) @@ -27221,6 +30627,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1000275 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_1000275 "smooth muscle cell of small intestine") EquivalentClasses(obo:CL_1000275 ObjectIntersectionOf(obo:CL_0002504 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002108))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000275 obo:CL_0002504) +SubClassOf(obo:CL_1000275 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002108)) # Class: obo:CL_1000276 (smooth muscle fiber of duodenum) @@ -27230,6 +30637,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:15058") oboInOwl:hasExact AnnotationAssertion(rdfs:label obo:CL_1000276 "smooth muscle fiber of duodenum") EquivalentClasses(obo:CL_1000276 ObjectIntersectionOf(obo:CL_1000275 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002114))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000276 obo:CL_1000275) +SubClassOf(obo:CL_1000276 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002114)) # Class: obo:CL_1000277 (smooth muscle fiber of jejunum) @@ -27239,6 +30647,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:15062") oboInOwl:hasExact AnnotationAssertion(rdfs:label obo:CL_1000277 "smooth muscle fiber of jejunum") EquivalentClasses(obo:CL_1000277 ObjectIntersectionOf(obo:CL_1000275 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002115))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000277 obo:CL_1000275) +SubClassOf(obo:CL_1000277 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002115)) # Class: obo:CL_1000278 (smooth muscle fiber of ileum) @@ -27249,6 +30658,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1000278 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_1000278 "smooth muscle fiber of ileum") EquivalentClasses(obo:CL_1000278 ObjectIntersectionOf(obo:CL_1000275 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002116))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000278 obo:CL_1000275) +SubClassOf(obo:CL_1000278 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002116)) # Class: obo:CL_1000279 (smooth muscle cell of large intestine) @@ -27261,6 +30671,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1000279 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000279 "smooth muscle cell of large intestine") EquivalentClasses(obo:CL_1000279 ObjectIntersectionOf(obo:CL_0002504 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000059))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000279 obo:CL_0002504) +SubClassOf(obo:CL_1000279 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000059)) # Class: obo:CL_1000280 (smooth muscle cell of colon) @@ -27269,7 +30680,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000280 "FMA:15663") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:15663") oboInOwl:hasExactSynonym obo:CL_1000280 "non-striated muscle fiber of colon") AnnotationAssertion(rdfs:label obo:CL_1000280 "smooth muscle cell of colon") EquivalentClasses(obo:CL_1000280 ObjectIntersectionOf(obo:CL_0002504 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001155))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000280 obo:CL_0002504) +SubClassOf(obo:CL_1000280 obo:CL_1000279) +SubClassOf(obo:CL_1000280 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001155)) # Class: obo:CL_1000281 (smooth muscle cell of cecum) @@ -27279,7 +30691,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:15681") oboInOwl:hasExact AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_1000281 "smooth muscle fiber of cecum") AnnotationAssertion(rdfs:label obo:CL_1000281 "smooth muscle cell of cecum") EquivalentClasses(obo:CL_1000281 ObjectIntersectionOf(obo:CL_0000192 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001153))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000281 obo:CL_0000192) +SubClassOf(obo:CL_1000281 obo:CL_1000280) +SubClassOf(obo:CL_1000281 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001153)) # Class: obo:CL_1000282 (smooth muscle fiber of ascending colon) @@ -27289,6 +30702,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:17518") oboInOwl:hasExact AnnotationAssertion(rdfs:label obo:CL_1000282 "smooth muscle fiber of ascending colon") EquivalentClasses(obo:CL_1000282 ObjectIntersectionOf(obo:CL_1000280 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001156))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000282 obo:CL_1000280) +SubClassOf(obo:CL_1000282 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001156)) # Class: obo:CL_1000283 (smooth muscle fiber of transverse colon) @@ -27298,6 +30712,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:17519") oboInOwl:hasExact AnnotationAssertion(rdfs:label obo:CL_1000283 "smooth muscle fiber of transverse colon") EquivalentClasses(obo:CL_1000283 ObjectIntersectionOf(obo:CL_1000280 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001157))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000283 obo:CL_1000280) +SubClassOf(obo:CL_1000283 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001157)) # Class: obo:CL_1000284 (smooth muscle fiber of descending colon) @@ -27307,6 +30722,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:17520") oboInOwl:hasExact AnnotationAssertion(rdfs:label obo:CL_1000284 "smooth muscle fiber of descending colon") EquivalentClasses(obo:CL_1000284 ObjectIntersectionOf(obo:CL_1000280 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001158))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000284 obo:CL_1000280) +SubClassOf(obo:CL_1000284 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001158)) # Class: obo:CL_1000285 (smooth muscle cell of sigmoid colon) @@ -27316,6 +30732,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:17521") oboInOwl:hasExact AnnotationAssertion(rdfs:label obo:CL_1000285 "smooth muscle cell of sigmoid colon") EquivalentClasses(obo:CL_1000285 ObjectIntersectionOf(obo:CL_1000280 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001159))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000285 obo:CL_1000280) +SubClassOf(obo:CL_1000285 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001159)) # Class: obo:CL_1000286 (smooth muscle cell of rectum) @@ -27325,7 +30742,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:17522") oboInOwl:hasExact AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_1000286 "smooth muscle fiber of rectum") AnnotationAssertion(rdfs:label obo:CL_1000286 "smooth muscle cell of rectum") EquivalentClasses(obo:CL_1000286 ObjectIntersectionOf(obo:CL_0000192 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001052))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000286 obo:CL_0002504) +SubClassOf(obo:CL_1000286 obo:CL_1000279) +SubClassOf(obo:CL_1000286 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001052)) # Class: obo:CL_1000287 (myocyte of anterior internodal tract) @@ -27393,6 +30811,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000296 "FMA:256165") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000296 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_1000296 "epithelial cell of urethra") EquivalentClasses(obo:CL_1000296 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000057))) +SubClassOf(obo:CL_1000296 obo:CL_0000066) +SubClassOf(obo:CL_1000296 obo:CL_1001320) # Class: obo:CL_1000297 (obo:CL_1000297) @@ -27407,6 +30827,9 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000298 "FMA:256516") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:256516") oboInOwl:hasExactSynonym obo:CL_1000298 "squamous mesothelial cell of dura mater") AnnotationAssertion(rdfs:label obo:CL_1000298 "mesothelial cell of dura mater") EquivalentClasses(obo:CL_1000298 ObjectIntersectionOf(obo:CL_0000077 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002363))) +SubClassOf(obo:CL_1000298 obo:CL_0000077) +SubClassOf(obo:CL_1000298 obo:CL_0002319) +SubClassOf(obo:CL_1000298 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002363)) # Class: obo:CL_1000299 (fibroblast of connective tissue of prostate) @@ -27444,6 +30867,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000302 "FMA:261277") AnnotationAssertion(rdfs:label obo:CL_1000302 "fibroblast of papillary layer of dermis") EquivalentClasses(obo:CL_1000302 ObjectIntersectionOf(obo:CL_0002551 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001992))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000302 obo:CL_0002551) +SubClassOf(obo:CL_1000302 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001992)) # Class: obo:CL_1000303 (fibroblast of areolar connective tissue) @@ -27479,6 +30903,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000306 "FMA:261285") AnnotationAssertion(rdfs:label obo:CL_1000306 "fibroblast of tunica adventitia of artery") EquivalentClasses(obo:CL_1000306 ObjectIntersectionOf(obo:CL_0000057 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005734))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000306 obo:CL_0000057) +SubClassOf(obo:CL_1000306 obo:CL_0002503) +SubClassOf(obo:CL_1000306 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005734)) # Class: obo:CL_1000307 (fibroblast of dense regular elastic tissue) @@ -27488,6 +30914,7 @@ AnnotationAssertion(rdfs:label obo:CL_1000307 "fibroblast of dense regular elast EquivalentClasses(obo:CL_1000307 ObjectIntersectionOf(obo:CL_0000057 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0007846))) SubClassOf(obo:CL_1000307 obo:CL_0000057) SubClassOf(obo:CL_1000307 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002521)) +SubClassOf(obo:CL_1000307 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0007846)) # Class: obo:CL_1000308 (fibrocyte of adventitia of ureter) @@ -27498,6 +30925,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1000308 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000308 "fibrocyte of adventitia of ureter") EquivalentClasses(obo:CL_1000308 ObjectIntersectionOf(obo:CL_0000135 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001252))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000308 obo:CL_0000135) +SubClassOf(obo:CL_1000308 obo:CL_1000708) # Class: obo:CL_1000309 (epicardial adipocyte) @@ -27510,6 +30938,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1000309 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_1000309 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000309 "epicardial adipocyte") SubClassOf(obo:CL_1000309 obo:CL_0000136) +SubClassOf(obo:CL_1000309 obo:CL_0002494) SubClassOf(obo:CL_1000309 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002348)) # Class: obo:CL_1000310 (adipocyte of epicardial fat of right ventricle) @@ -27520,7 +30949,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:261297") oboInOwl:hasExac AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:261297") oboInOwl:hasExactSynonym obo:CL_1000310 "epicardial fat cell of right ventricle") AnnotationAssertion(rdfs:label obo:CL_1000310 "adipocyte of epicardial fat of right ventricle") EquivalentClasses(obo:CL_1000310 ObjectIntersectionOf(obo:CL_1000309 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002080))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000310 obo:CL_0000136) +SubClassOf(obo:CL_1000310 obo:CL_1000309) SubClassOf(obo:CL_1000310 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002080)) # Class: obo:CL_1000311 (adipocyte of epicardial fat of left ventricle) @@ -27532,7 +30961,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:261300") oboInOwl:hasExac AnnotationAssertion(oboInOwl:inSubset obo:CL_1000311 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_1000311 "adipocyte of epicardial fat of left ventricle") EquivalentClasses(obo:CL_1000311 ObjectIntersectionOf(obo:CL_1000309 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002084))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000311 obo:CL_0000136) +SubClassOf(obo:CL_1000311 obo:CL_1000309) SubClassOf(obo:CL_1000311 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002084)) # Class: obo:CL_1000312 (bronchial goblet cell) @@ -27543,7 +30972,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:263032") oboInOwl:hasExac AnnotationAssertion(oboInOwl:inSubset obo:CL_1000312 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_1000312 "bronchial goblet cell") EquivalentClasses(obo:CL_1000312 ObjectIntersectionOf(obo:CL_0000160 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002185))) -SubClassOf(obo:CL_1000312 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002031)) +SubClassOf(obo:CL_1000312 obo:CL_0002328) +SubClassOf(obo:CL_1000312 obo:CL_0019003) # Class: obo:CL_1000313 (gastric goblet cell) @@ -27552,6 +30982,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000313 "FMA:263035") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:263035") oboInOwl:hasExactSynonym obo:CL_1000313 "goblet cell of epithelium of stomach") AnnotationAssertion(rdfs:label obo:CL_1000313 "gastric goblet cell") EquivalentClasses(obo:CL_1000313 ObjectIntersectionOf(obo:CL_0000160 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000945))) +SubClassOf(obo:CL_1000313 obo:CL_0000160) +SubClassOf(obo:CL_1000313 obo:CL_0002180) SubClassOf(obo:CL_1000313 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001276)) # Class: obo:CL_1000314 (gastric cardiac gland goblet cell) @@ -27561,6 +30993,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000314 "FMA:263038") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_1000314 "goblet cell of epithelium of gastric cardiac gland") AnnotationAssertion(rdfs:label obo:CL_1000314 "gastric cardiac gland goblet cell") EquivalentClasses(obo:CL_1000314 ObjectIntersectionOf(obo:CL_0000160 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0008859))) +SubClassOf(obo:CL_1000314 obo:CL_0000152) +SubClassOf(obo:CL_1000314 obo:CL_1000313) SubClassOf(obo:CL_1000314 ObjectSomeValuesFrom(obo:BFO_0000050 ObjectIntersectionOf(obo:UBERON_0000483 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0008859)))) # Class: obo:CL_1000315 (principal gastric gland goblet cell) @@ -27570,7 +31004,9 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000315 "FMA:263040") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_1000315 "goblet cell of epithelium of principal gastric gland") AnnotationAssertion(rdfs:label obo:CL_1000315 "principal gastric gland goblet cell") EquivalentClasses(obo:CL_1000315 ObjectIntersectionOf(obo:CL_0000160 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0009971))) +SubClassOf(obo:CL_1000315 obo:CL_0000152) SubClassOf(obo:CL_1000315 obo:CL_1000313) +SubClassOf(obo:CL_1000315 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0009971)) # Class: obo:CL_1000316 (obsolete goblet cell of epithelium of small intestine) @@ -27587,6 +31023,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000317 "FMA:263046") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_1000317 "goblet cell of epithelium of intestinal villus") AnnotationAssertion(rdfs:label obo:CL_1000317 "intestinal villus goblet cell") EquivalentClasses(obo:CL_1000317 ObjectIntersectionOf(obo:CL_0000160 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001213))) +SubClassOf(obo:CL_1000317 obo:CL_1000495) SubClassOf(obo:CL_1000317 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0013636)) # Class: obo:CL_1000318 (obsolete small intestine crypt goblet cell) @@ -27611,6 +31048,8 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_1000320 "goblet cell of epit AnnotationAssertion(oboInOwl:inSubset obo:CL_1000320 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_1000320 "large intestine goblet cell") EquivalentClasses(obo:CL_1000320 ObjectIntersectionOf(obo:CL_0000160 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000059))) +SubClassOf(obo:CL_1000320 obo:CL_0002658) +SubClassOf(obo:CL_1000320 obo:CL_0019031) SubClassOf(obo:CL_1000320 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001278)) # Class: obo:CL_1000321 (large intestine crypt goblet cell) @@ -27621,6 +31060,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000321 "FMA:263056") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000321 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000321 "large intestine crypt goblet cell") EquivalentClasses(obo:CL_1000321 ObjectIntersectionOf(obo:CL_0000160 ObjectSomeValuesFrom(obo:BFO_0000050 ObjectIntersectionOf(obo:UBERON_0001983 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000059))))) +SubClassOf(obo:CL_1000321 obo:CL_1000320) SubClassOf(obo:CL_1000321 ObjectSomeValuesFrom(obo:BFO_0000050 ObjectIntersectionOf(obo:UBERON_0000483 ObjectSomeValuesFrom(obo:BFO_0000050 ObjectIntersectionOf(obo:UBERON_0001983 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000059)))))) # Class: obo:CL_1000322 (pancreatic goblet cell) @@ -27633,6 +31073,8 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1000322 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000322 "pancreatic goblet cell") EquivalentClasses(obo:CL_1000322 ObjectIntersectionOf(obo:CL_0000160 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001264))) SubClassOf(obo:CL_1000322 obo:CL_0000069) +SubClassOf(obo:CL_1000322 obo:CL_0000160) +SubClassOf(obo:CL_1000322 obo:CL_1001599) SubClassOf(obo:CL_1000322 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0009970)) # Class: obo:CL_1000323 (pyloric gastric gland goblet cell) @@ -27642,6 +31084,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000323 "FMA:263061") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_1000323 "goblet cell of epithelium of pyloric gland") AnnotationAssertion(rdfs:label obo:CL_1000323 "pyloric gastric gland goblet cell") EquivalentClasses(obo:CL_1000323 ObjectIntersectionOf(obo:CL_0000160 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0008861))) +SubClassOf(obo:CL_1000323 obo:CL_0000152) +SubClassOf(obo:CL_1000323 obo:CL_1000313) SubClassOf(obo:CL_1000323 ObjectSomeValuesFrom(obo:BFO_0000050 ObjectIntersectionOf(obo:UBERON_0000483 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0008861)))) # Class: obo:CL_1000324 (duodenal goblet cell) @@ -27653,7 +31097,8 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_1000324 "goblet cell of epit AnnotationAssertion(oboInOwl:inSubset obo:CL_1000324 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000324 "duodenal goblet cell") EquivalentClasses(obo:CL_1000324 ObjectIntersectionOf(obo:CL_0000160 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002114))) -SubClassOf(obo:CL_1000324 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0008346)) +SubClassOf(obo:CL_1000324 obo:CL_1000317) +SubClassOf(obo:CL_1000324 obo:CL_1001589) # Class: obo:CL_1000325 (jejunal goblet cell) @@ -27664,6 +31109,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_1000325 "goblet cell of epit AnnotationAssertion(oboInOwl:inSubset obo:CL_1000325 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000325 "jejunal goblet cell") EquivalentClasses(obo:CL_1000325 ObjectIntersectionOf(obo:CL_0000160 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002115))) +SubClassOf(obo:CL_1000325 obo:CL_1000317) SubClassOf(obo:CL_1000325 ObjectSomeValuesFrom(obo:BFO_0000050 ObjectIntersectionOf(obo:UBERON_0000483 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002115)))) # Class: obo:CL_1000326 (ileal goblet cell) @@ -27674,6 +31120,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_1000326 "goblet cell of epit AnnotationAssertion(oboInOwl:inSubset obo:CL_1000326 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_1000326 "ileal goblet cell") EquivalentClasses(obo:CL_1000326 ObjectIntersectionOf(obo:CL_0000160 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002116))) +SubClassOf(obo:CL_1000326 obo:CL_1000317) SubClassOf(obo:CL_1000326 ObjectSomeValuesFrom(obo:BFO_0000050 ObjectIntersectionOf(obo:UBERON_0000483 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002116)))) # Class: obo:CL_1000327 (appendix goblet cell) @@ -27683,7 +31130,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000327 "FMA:263069") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_1000327 "goblet cell of epithelium proper of appendix") AnnotationAssertion(rdfs:label obo:CL_1000327 "appendix goblet cell") EquivalentClasses(obo:CL_1000327 ObjectIntersectionOf(obo:CL_0000160 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001154))) -SubClassOf(obo:CL_1000327 ObjectSomeValuesFrom(obo:BFO_0000050 ObjectIntersectionOf(obo:UBERON_0000483 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001154)))) +SubClassOf(obo:CL_1000327 obo:CL_1000320) +SubClassOf(obo:CL_1000327 obo:CL_1001585) # Class: obo:CL_1000328 (obsolete goblet cell of epithelium proper of large intestine) @@ -27702,6 +31150,8 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1000329 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_1000329 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000329 "tracheal goblet cell") EquivalentClasses(obo:CL_1000329 ObjectIntersectionOf(obo:CL_0000160 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003126))) +SubClassOf(obo:CL_1000329 obo:CL_0000307) +SubClassOf(obo:CL_1000329 obo:CL_0019003) SubClassOf(obo:CL_1000329 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001901)) # Class: obo:CL_1000330 (serous cell of epithelium of trachea) @@ -27713,6 +31163,8 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1000330 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_1000330 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000330 "serous cell of epithelium of trachea") EquivalentClasses(obo:CL_1000330 ObjectIntersectionOf(obo:CL_0000313 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001901))) +SubClassOf(obo:CL_1000330 obo:CL_0019001) +SubClassOf(obo:CL_1000330 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001901)) # Class: obo:CL_1000331 (serous cell of epithelium of bronchus) @@ -27723,6 +31175,8 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1000331 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_1000331 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000331 "serous cell of epithelium of bronchus") EquivalentClasses(obo:CL_1000331 ObjectIntersectionOf(obo:CL_0000313 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002031))) +SubClassOf(obo:CL_1000331 obo:CL_0019001) +SubClassOf(obo:CL_1000331 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002031)) # Class: obo:CL_1000332 (serous cell of epithelium of terminal bronchiole) @@ -27730,6 +31184,9 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000332 "FMA:263082") AnnotationAssertion(rdfs:label obo:CL_1000332 "serous cell of epithelium of terminal bronchiole") EquivalentClasses(obo:CL_1000332 ObjectIntersectionOf(obo:CL_0000313 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001958))) +SubClassOf(obo:CL_1000332 obo:CL_0019001) +SubClassOf(obo:CL_1000332 obo:CL_1000272) +SubClassOf(obo:CL_1000332 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001958)) # Class: obo:CL_1000333 (serous cell of epithelium of lobular bronchiole) @@ -27737,6 +31194,9 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000333 "FMA:263084") AnnotationAssertion(rdfs:label obo:CL_1000333 "serous cell of epithelium of lobular bronchiole") EquivalentClasses(obo:CL_1000333 ObjectIntersectionOf(obo:CL_0000313 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_8600001))) +SubClassOf(obo:CL_1000333 obo:CL_0019001) +SubClassOf(obo:CL_1000333 obo:CL_1000272) +SubClassOf(obo:CL_1000333 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_8600001)) # Class: obo:CL_1000334 (enterocyte of epithelium of small intestine) @@ -27746,6 +31206,8 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1000334 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_1000334 "enterocyte of epithelium of small intestine") EquivalentClasses(obo:CL_1000334 ObjectIntersectionOf(obo:CL_0000584 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001902))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000334 obo:CL_0000584) +SubClassOf(obo:CL_1000334 obo:CL_0002254) +SubClassOf(obo:CL_1000334 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001902)) # Class: obo:CL_1000335 (enterocyte of epithelium of intestinal villus) @@ -27753,8 +31215,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000335 "FMA:263088") AnnotationAssertion(rdfs:label obo:CL_1000335 "enterocyte of epithelium of intestinal villus") EquivalentClasses(obo:CL_1000335 ObjectIntersectionOf(obo:CL_0000584 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0013636))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000335 obo:CL_0000584) -SubClassOf(obo:CL_1000335 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001213)) +SubClassOf(obo:CL_1000335 obo:CL_1000334) +SubClassOf(obo:CL_1000335 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0013636)) # Class: obo:CL_1000336 (obo:CL_1000336) @@ -27768,6 +31230,9 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000337 "FMA:263092") AnnotationAssertion(rdfs:label obo:CL_1000337 "enterocyte of epithelium of duodenal gland") EquivalentClasses(obo:CL_1000337 ObjectIntersectionOf(obo:CL_0000584 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001212))) +SubClassOf(obo:CL_1000337 obo:CL_0000584) +SubClassOf(obo:CL_1000337 obo:CL_0002254) +SubClassOf(obo:CL_1000337 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001212)) # Class: obo:CL_1000338 (enterocyte of epithelium of crypt of Lieberkuhn of small intestine) @@ -27815,7 +31280,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1000343 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_1000343 "paneth cell of epithelium of small intestine") EquivalentClasses(obo:CL_1000343 ObjectIntersectionOf(obo:CL_0000510 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001902))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000343 obo:CL_0000510) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000343 obo:CL_0002254) +SubClassOf(obo:CL_1000343 obo:CL_1001598) # Class: obo:CL_1000344 (paneth cell of epithelium proper of small intestine) @@ -27832,7 +31297,6 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000345 "FMA:263108") AnnotationAssertion(rdfs:label obo:CL_1000345 "paneth cell of epithelium of crypt of Lieberkuhn of small intestine") SubClassOf(obo:CL_1000345 obo:CL_1000343) -SubClassOf(obo:CL_1000345 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001983)) # Class: obo:CL_1000346 (enterocyte of epithelium proper of large intestine) @@ -27852,6 +31316,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1000347 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_1000347 "enterocyte of colon") EquivalentClasses(obo:CL_1000347 ObjectIntersectionOf(obo:CL_0002071 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000397))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000347 obo:CL_0002071) +SubClassOf(obo:CL_1000347 obo:CL_0011108) # Class: obo:CL_1000348 (basal cell of epithelium of trachea) @@ -27862,7 +31327,9 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1000348 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_1000348 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000348 "basal cell of epithelium of trachea") EquivalentClasses(obo:CL_1000348 ObjectIntersectionOf(obo:CL_0002633 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001901))) +SubClassOf(obo:CL_1000348 obo:CL_0000307) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000348 obo:CL_0002633) +SubClassOf(obo:CL_1000348 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001901)) # Class: obo:CL_1000349 (basal cell of epithelium of bronchus) @@ -27873,7 +31340,9 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_1000349 "basal cell of bronc AnnotationAssertion(oboInOwl:inSubset obo:CL_1000349 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000349 "basal cell of epithelium of bronchus") EquivalentClasses(obo:CL_1000349 ObjectIntersectionOf(obo:CL_0002633 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002031))) +SubClassOf(obo:CL_1000349 obo:CL_0002328) SubClassOf(obo:CL_1000349 obo:CL_0002329) +SubClassOf(obo:CL_1000349 obo:CL_0002633) # Class: obo:CL_1000350 (basal cell of epithelium of terminal bronchiole) @@ -27883,7 +31352,10 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000350 "FMA:263122") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000350 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000350 "basal cell of epithelium of terminal bronchiole") EquivalentClasses(obo:CL_1000350 ObjectIntersectionOf(obo:CL_0002633 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001958))) +SubClassOf(obo:CL_1000350 obo:CL_0000082) +SubClassOf(obo:CL_1000350 obo:CL_0002202) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000350 obo:CL_0002633) +SubClassOf(obo:CL_1000350 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001958)) # Class: obo:CL_1000351 (basal cell of epithelium of respiratory bronchiole) @@ -27893,7 +31365,10 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000351 "FMA:263124") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000351 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000351 "basal cell of epithelium of respiratory bronchiole") EquivalentClasses(obo:CL_1000351 ObjectIntersectionOf(obo:CL_0002633 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001955))) +SubClassOf(obo:CL_1000351 obo:CL_0000082) +SubClassOf(obo:CL_1000351 obo:CL_0002202) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000351 obo:CL_0002633) +SubClassOf(obo:CL_1000351 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001955)) # Class: obo:CL_1000352 (basal cell of epithelium of lobular bronchiole) @@ -27903,7 +31378,10 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000352 "FMA:263126") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000352 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000352 "basal cell of epithelium of lobular bronchiole") EquivalentClasses(obo:CL_1000352 ObjectIntersectionOf(obo:CL_0002633 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_8600001))) +SubClassOf(obo:CL_1000352 obo:CL_0000082) +SubClassOf(obo:CL_1000352 obo:CL_0002202) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000352 obo:CL_0002633) +SubClassOf(obo:CL_1000352 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_8600001)) # Class: obo:CL_1000353 (microfold cell of epithelium of small intestine) @@ -27913,6 +31391,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1000353 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_1000353 "microfold cell of epithelium of small intestine") EquivalentClasses(obo:CL_1000353 ObjectIntersectionOf(obo:CL_0000682 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002108))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000353 obo:CL_0000682) +SubClassOf(obo:CL_1000353 obo:CL_0002254) SubClassOf(obo:CL_1000353 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001902)) # Class: obo:CL_1000354 (microfold cell of epithelium of intestinal villus) @@ -27921,7 +31400,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000354 "FMA:263130") AnnotationAssertion(rdfs:label obo:CL_1000354 "microfold cell of epithelium of intestinal villus") EquivalentClasses(obo:CL_1000354 ObjectIntersectionOf(obo:CL_0000682 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001213))) -SubClassOf(obo:CL_1000354 obo:CL_0000682) +SubClassOf(obo:CL_1000354 obo:CL_1000353) SubClassOf(obo:CL_1000354 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0013636)) # Class: obo:CL_1000355 (microfold cell of epithelium proper of small intestine) @@ -27937,7 +31416,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000356 "FMA:263134") AnnotationAssertion(rdfs:label obo:CL_1000356 "microfold cell of epithelium proper of duodenum") EquivalentClasses(obo:CL_1000356 ObjectIntersectionOf(obo:CL_0000682 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002114))) -SubClassOf(obo:CL_1000356 obo:CL_0000682) +SubClassOf(obo:CL_1000356 obo:CL_1000354) SubClassOf(obo:CL_1000356 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0008346)) # Class: obo:CL_1000357 (microfold cell of epithelium proper of jejunum) @@ -27946,7 +31425,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000357 "FMA:263136") AnnotationAssertion(rdfs:label obo:CL_1000357 "microfold cell of epithelium proper of jejunum") EquivalentClasses(obo:CL_1000357 ObjectIntersectionOf(obo:CL_0000682 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002115))) -SubClassOf(obo:CL_1000357 obo:CL_0000682) +SubClassOf(obo:CL_1000357 obo:CL_1000353) +SubClassOf(obo:CL_1000357 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002115)) # Class: obo:CL_1000358 (microfold cell of epithelium proper of ileum) @@ -27954,7 +31434,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000358 "FMA:263138") AnnotationAssertion(rdfs:label obo:CL_1000358 "microfold cell of epithelium proper of ileum") EquivalentClasses(obo:CL_1000358 ObjectIntersectionOf(obo:CL_0000682 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002116))) -SubClassOf(obo:CL_1000358 obo:CL_0000682) +SubClassOf(obo:CL_1000358 obo:CL_1000353) +SubClassOf(obo:CL_1000358 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002116)) # Class: obo:CL_1000359 (microfold cell of epithelium proper of appendix) @@ -27962,7 +31443,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000359 "FMA:263140") AnnotationAssertion(rdfs:label obo:CL_1000359 "microfold cell of epithelium proper of appendix") EquivalentClasses(obo:CL_1000359 ObjectIntersectionOf(obo:CL_0000682 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001154))) -SubClassOf(obo:CL_1000359 obo:CL_0000682) +SubClassOf(obo:CL_1000359 obo:CL_1000360) +SubClassOf(obo:CL_1000359 obo:CL_1000405) SubClassOf(obo:CL_1000359 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0009697)) # Class: obo:CL_1000360 (microfold cell of epithelium proper of large intestine) @@ -27981,6 +31463,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000361 "FMA:263152") AnnotationAssertion(rdfs:label obo:CL_1000361 "transitional myocyte of interatrial septum") EquivalentClasses(obo:CL_1000361 ObjectIntersectionOf(obo:CL_0002073 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002085))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000361 obo:CL_0002073) +SubClassOf(obo:CL_1000361 obo:CL_2000022) +SubClassOf(obo:CL_1000361 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002085)) # Class: obo:CL_1000362 (transitional myocyte of interventricular septum) @@ -27989,6 +31473,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000362 "FMA:263154") AnnotationAssertion(rdfs:label obo:CL_1000362 "transitional myocyte of interventricular septum") EquivalentClasses(obo:CL_1000362 ObjectIntersectionOf(obo:CL_0002073 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002094))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000362 obo:CL_0002073) +SubClassOf(obo:CL_1000362 obo:CL_2000022) +SubClassOf(obo:CL_1000362 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002094)) # Class: obo:CL_1000363 (transitional myocyte of atrial branch of anterior internodal tract) @@ -28030,16 +31516,14 @@ SubClassOf(obo:CL_1000367 obo:CL_1000480) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_1000368 "A transitional myocyte that is part of the anterior division of left branch of atrioventricular bundle.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000368 "FMA:263166") AnnotationAssertion(rdfs:label obo:CL_1000368 "transitional myocyte of anterior division of left branch of atrioventricular bundle") -SubClassOf(obo:CL_1000368 obo:CL_1000481) -SubClassOf(obo:CL_1000368 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005986)) +SubClassOf(obo:CL_1000368 obo:CL_1000370) # Class: obo:CL_1000369 (transitional myocyte of septal division of left branch of atrioventricular bundle) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_1000369 "A transitional myocyte that is part of the septal division of left branch of atrioventricular bundle.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000369 "FMA:263168") AnnotationAssertion(rdfs:label obo:CL_1000369 "transitional myocyte of septal division of left branch of atrioventricular bundle") -SubClassOf(obo:CL_1000369 obo:CL_1000481) -SubClassOf(obo:CL_1000369 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005986)) +SubClassOf(obo:CL_1000369 obo:CL_1000370) # Class: obo:CL_1000370 (transitional myocyte of left branch of atrioventricular bundle) @@ -28078,8 +31562,7 @@ SubClassOf(obo:CL_1000373 obo:CL_1000481) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_1000374 "A transitional myocyte that is part of the posterior division of left branch of atrioventricular bundle.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000374 "FMA:263178") AnnotationAssertion(rdfs:label obo:CL_1000374 "transitional myocyte of posterior division of left branch of atrioventricular bundle") -SubClassOf(obo:CL_1000374 obo:CL_1000481) -SubClassOf(obo:CL_1000374 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005986)) +SubClassOf(obo:CL_1000374 obo:CL_1000370) # Class: obo:CL_1000375 (myocardial endocrine cell of septal division of left branch of atrioventricular bundle) @@ -28087,6 +31570,9 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000375 "FMA:263180") AnnotationAssertion(rdfs:label obo:CL_1000375 "myocardial endocrine cell of septal division of left branch of atrioventricular bundle") SubClassOf(obo:CL_1000375 obo:CL_0002074) +SubClassOf(obo:CL_1000375 obo:CL_0008009) +SubClassOf(obo:CL_1000375 obo:CL_0010007) +SubClassOf(obo:CL_1000375 obo:CL_2000046) SubClassOf(obo:CL_1000375 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005986)) # Class: obo:CL_1000376 (Purkinje myocyte of interventricular septum) @@ -28096,6 +31582,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000376 "FMA:263182") AnnotationAssertion(rdfs:label obo:CL_1000376 "Purkinje myocyte of interventricular septum") EquivalentClasses(obo:CL_1000376 ObjectIntersectionOf(obo:CL_0002068 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002094))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000376 obo:CL_0002068) +SubClassOf(obo:CL_1000376 obo:CL_2000022) +SubClassOf(obo:CL_1000376 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002094)) # Class: obo:CL_1000377 (dense-core granulated cell of epithelium of trachea) @@ -28105,6 +31593,7 @@ AnnotationAssertion(rdfs:label obo:CL_1000377 "dense-core granulated cell of epi EquivalentClasses(obo:CL_1000377 ObjectIntersectionOf(obo:CL_0002066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001901))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000377 obo:CL_0000307) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000377 obo:CL_0002066) +SubClassOf(obo:CL_1000377 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001901)) # Class: obo:CL_1000378 (type 1 vestibular sensory cell of stato-acoustic epithelium) @@ -28112,6 +31601,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000378 "FMA:263186") AnnotationAssertion(rdfs:label obo:CL_1000378 "type 1 vestibular sensory cell of stato-acoustic epithelium") EquivalentClasses(obo:CL_1000378 ObjectIntersectionOf(obo:CL_0002070 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0009969))) +SubClassOf(obo:CL_1000378 obo:CL_0002070) +SubClassOf(obo:CL_1000378 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0009969)) # Class: obo:CL_1000379 (type 1 vestibular sensory cell of epithelium of macula of utricle of membranous labyrinth) @@ -28119,6 +31610,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000379 "FMA:263188") AnnotationAssertion(rdfs:label obo:CL_1000379 "type 1 vestibular sensory cell of epithelium of macula of utricle of membranous labyrinth") EquivalentClasses(obo:CL_1000379 ObjectIntersectionOf(obo:CL_0002070 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002214))) +SubClassOf(obo:CL_1000379 obo:CL_0002070) SubClassOf(obo:CL_1000379 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003241)) # Class: obo:CL_1000380 (type 1 vestibular sensory cell of epithelium of macula of saccule of membranous labyrinth) @@ -28127,6 +31619,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000380 "FMA:263190") AnnotationAssertion(rdfs:label obo:CL_1000380 "type 1 vestibular sensory cell of epithelium of macula of saccule of membranous labyrinth") EquivalentClasses(obo:CL_1000380 ObjectIntersectionOf(obo:CL_0002070 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002212))) +SubClassOf(obo:CL_1000380 obo:CL_0002070) +SubClassOf(obo:CL_1000380 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002212)) SubClassOf(obo:CL_1000380 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003242)) # Class: obo:CL_1000381 (type 1 vestibular sensory cell of epithelium of crista of ampulla of semicircular duct of membranous labyrinth) @@ -28135,6 +31629,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000381 "FMA:263192") AnnotationAssertion(rdfs:label obo:CL_1000381 "type 1 vestibular sensory cell of epithelium of crista of ampulla of semicircular duct of membranous labyrinth") EquivalentClasses(obo:CL_1000381 ObjectIntersectionOf(obo:CL_0002070 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0006935))) +SubClassOf(obo:CL_1000381 obo:CL_0002070) +SubClassOf(obo:CL_1000381 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0006935)) # Class: obo:CL_1000382 (type 2 vestibular sensory cell of stato-acoustic epithelium) @@ -28142,6 +31638,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000382 "FMA:263194") AnnotationAssertion(rdfs:label obo:CL_1000382 "type 2 vestibular sensory cell of stato-acoustic epithelium") EquivalentClasses(obo:CL_1000382 ObjectIntersectionOf(obo:CL_0002069 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0009969))) +SubClassOf(obo:CL_1000382 obo:CL_0002069) +SubClassOf(obo:CL_1000382 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0009969)) # Class: obo:CL_1000383 (type 2 vestibular sensory cell of epithelium of macula of utricle of membranous labyrinth) @@ -28149,6 +31647,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000383 "FMA:263196") AnnotationAssertion(rdfs:label obo:CL_1000383 "type 2 vestibular sensory cell of epithelium of macula of utricle of membranous labyrinth") EquivalentClasses(obo:CL_1000383 ObjectIntersectionOf(obo:CL_0002069 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002214))) +SubClassOf(obo:CL_1000383 obo:CL_0002069) SubClassOf(obo:CL_1000383 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003241)) # Class: obo:CL_1000384 (type 2 vestibular sensory cell of epithelium of macula of saccule of membranous labyrinth) @@ -28157,6 +31656,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000384 "FMA:263198") AnnotationAssertion(rdfs:label obo:CL_1000384 "type 2 vestibular sensory cell of epithelium of macula of saccule of membranous labyrinth") EquivalentClasses(obo:CL_1000384 ObjectIntersectionOf(obo:CL_0002069 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002212))) +SubClassOf(obo:CL_1000384 obo:CL_0002069) +SubClassOf(obo:CL_1000384 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002212)) SubClassOf(obo:CL_1000384 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003242)) # Class: obo:CL_1000385 (type 2 vestibular sensory cell of epithelium of crista of ampulla of semicircular duct of membranous labyrinth) @@ -28165,6 +31666,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000385 "FMA:263200") AnnotationAssertion(rdfs:label obo:CL_1000385 "type 2 vestibular sensory cell of epithelium of crista of ampulla of semicircular duct of membranous labyrinth") EquivalentClasses(obo:CL_1000385 ObjectIntersectionOf(obo:CL_0002069 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0006935))) +SubClassOf(obo:CL_1000385 obo:CL_0002069) +SubClassOf(obo:CL_1000385 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0006935)) # Class: obo:CL_1000386 (obo:CL_1000386) @@ -28205,6 +31708,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:59175") oboInOwl:hasExact AnnotationAssertion(rdfs:label obo:CL_1000391 "melanocyte of eyelid") EquivalentClasses(obo:CL_1000391 ObjectIntersectionOf(obo:CL_0000148 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001711))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000391 obo:CL_0000148) +SubClassOf(obo:CL_1000391 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001711)) # Class: obo:CL_1000393 (obo:CL_1000393) @@ -28239,6 +31743,8 @@ AnnotationAssertion(rdfs:comment obo:CL_1000397 "todo - add logical definition t AnnotationAssertion(rdfs:label obo:CL_1000397 "endothelial cell of venous sinus of red pulp of spleen") EquivalentClasses(obo:CL_1000397 ObjectIntersectionOf(obo:CL_0000115 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0009967))) SubClassOf(obo:CL_1000397 obo:CL_0002651) +SubClassOf(obo:CL_1000397 obo:CL_2000053) +SubClassOf(obo:CL_1000397 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0009967)) # Class: obo:CL_1000398 (endothelial cell of hepatic sinusoid) @@ -28253,6 +31759,8 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1000398 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_1000398 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000398 "endothelial cell of hepatic sinusoid") EquivalentClasses(obo:CL_1000398 ObjectIntersectionOf(obo:CL_0000115 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001281))) +SubClassOf(obo:CL_1000398 obo:CL_0002262) +SubClassOf(obo:CL_1000398 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001281)) # Class: obo:CL_1000399 (obo:CL_1000399) @@ -28298,6 +31806,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:63602") oboInOwl:hasExact AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:63602") oboInOwl:hasExactSynonym obo:CL_1000405 "epithelial cell of vermiform appendix") AnnotationAssertion(rdfs:label obo:CL_1000405 "epithelial cell of appendix") EquivalentClasses(obo:CL_1000405 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001154))) +SubClassOf(obo:CL_1000405 obo:CL_0002253) +SubClassOf(obo:CL_1000405 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001154)) # Class: obo:CL_1000406 (obo:CL_1000406) @@ -28329,6 +31839,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:67102") oboInOwl:hasExact AnnotationAssertion(rdfs:label obo:CL_1000409 "myocyte of sinoatrial node") EquivalentClasses(obo:CL_1000409 ObjectIntersectionOf(obo:CL_0000187 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002351))) SubClassOf(obo:CL_1000409 obo:CL_0002072) +SubClassOf(obo:CL_1000409 obo:CL_0008009) +SubClassOf(obo:CL_1000409 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002351)) # Class: obo:CL_1000410 (myocyte of atrioventricular node) @@ -28342,6 +31854,9 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:67106") oboInOwl:hasExact AnnotationAssertion(rdfs:label obo:CL_1000410 "myocyte of atrioventricular node") EquivalentClasses(obo:CL_1000410 ObjectIntersectionOf(obo:CL_0000187 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002352))) SubClassOf(obo:CL_1000410 obo:CL_0002072) +SubClassOf(obo:CL_1000410 obo:CL_0008009) +SubClassOf(obo:CL_1000410 obo:CL_2000022) +SubClassOf(obo:CL_1000410 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002352)) # Class: obo:CL_1000411 (endothelial cell of Peyer's patch) @@ -28350,6 +31865,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000411 "FMA:67757") AnnotationAssertion(rdfs:label obo:CL_1000411 "endothelial cell of Peyer's patch") EquivalentClasses(obo:CL_1000411 ObjectIntersectionOf(obo:CL_0000115 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003454))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000411 obo:CL_0000115) +SubClassOf(obo:CL_1000411 obo:CL_0002254) +SubClassOf(obo:CL_1000411 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003454)) # Class: obo:CL_1000412 (endothelial cell of arteriole) @@ -28361,6 +31878,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1000412 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000412 "endothelial cell of arteriole") EquivalentClasses(obo:CL_1000412 ObjectIntersectionOf(obo:CL_0000115 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001980))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000412 obo:CL_0000071) +SubClassOf(obo:CL_1000412 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001980)) # Class: obo:CL_1000413 (endothelial cell of artery) @@ -28387,6 +31905,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1000414 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000414 "endothelial cell of venule") EquivalentClasses(obo:CL_1000414 ObjectIntersectionOf(obo:CL_0002139 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001979))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000414 obo:CL_0002139) +SubClassOf(obo:CL_1000414 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001979)) # Class: obo:CL_1000415 (epithelial cell of gallbladder) @@ -28394,6 +31913,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000415 "FMA:67780") AnnotationAssertion(rdfs:label obo:CL_1000415 "epithelial cell of gallbladder") EquivalentClasses(obo:CL_1000415 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002110))) +SubClassOf(obo:CL_1000415 obo:CL_0000066) +SubClassOf(obo:CL_1000415 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002110)) # Class: obo:CL_1000416 (obsolete myoepithelial cell of lactiferous gland) @@ -28412,6 +31933,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1000417 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000417 "myoepithelial cell of sweat gland") EquivalentClasses(obo:CL_1000417 ObjectIntersectionOf(obo:CL_0000185 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001820))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000417 obo:CL_0000185) +SubClassOf(obo:CL_1000417 obo:CL_1000448) # Class: obo:CL_1000418 (myoepithelial cell of lactiferous alveolus) @@ -28421,7 +31943,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:67802") oboInOwl:hasExact AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:67802") oboInOwl:hasExactSynonym obo:CL_1000418 "myoepithelial cell of mammary alveolus") AnnotationAssertion(rdfs:label obo:CL_1000418 "myoepithelial cell of lactiferous alveolus") EquivalentClasses(obo:CL_1000418 ObjectIntersectionOf(obo:CL_0000185 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003214))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000418 obo:CL_0000185) +SubClassOf(obo:CL_1000418 obo:CL_0002324) +SubClassOf(obo:CL_1000418 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003214)) # Class: obo:CL_1000419 (myoepithelial cell of lactiferous duct) @@ -28429,7 +31952,9 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000419 "FMA:67803") AnnotationAssertion(rdfs:label obo:CL_1000419 "myoepithelial cell of lactiferous duct") EquivalentClasses(obo:CL_1000419 ObjectIntersectionOf(obo:CL_0000185 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001765))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000419 obo:CL_0000185) +SubClassOf(obo:CL_1000419 obo:CL_0000068) +SubClassOf(obo:CL_1000419 obo:CL_0002324) +SubClassOf(obo:CL_1000419 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001765)) # Class: obo:CL_1000420 (myoepithelial cell of terminal lactiferous duct) @@ -28463,7 +31988,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000424 "FMA:69328") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:69328") oboInOwl:hasExactSynonym obo:CL_1000424 "chromaffin cell of para-aortic body") AnnotationAssertion(rdfs:label obo:CL_1000424 "chromaffin cell of paraaortic body") EquivalentClasses(obo:CL_1000424 ObjectIntersectionOf(obo:CL_0000166 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001237))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000424 obo:CL_0000166) +SubClassOf(obo:CL_1000424 obo:CL_1000425) +SubClassOf(obo:CL_1000424 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001237)) # Class: obo:CL_1000425 (chromaffin cell of paraganglion) @@ -28472,6 +31998,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000425 "FMA:69335") AnnotationAssertion(rdfs:label obo:CL_1000425 "chromaffin cell of paraganglion") EquivalentClasses(obo:CL_1000425 ObjectIntersectionOf(obo:CL_0000166 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0012279))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000425 obo:CL_0000166) +SubClassOf(obo:CL_1000425 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0012279)) # Class: obo:CL_1000426 (chromaffin cell of adrenal gland) @@ -28482,6 +32009,7 @@ AnnotationAssertion(rdfs:label obo:CL_1000426 "chromaffin cell of adrenal gland" EquivalentClasses(obo:CL_1000426 ObjectIntersectionOf(obo:CL_0000166 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002369))) SubClassOf(obo:CL_1000426 obo:CL_0000150) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000426 obo:CL_0000166) +SubClassOf(obo:CL_1000426 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002369)) # Class: obo:CL_1000427 (adrenal cortex chromaffin cell) @@ -28491,17 +32019,20 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_1000427 "chromaffin cell of AnnotationAssertion(rdfs:comment obo:CL_1000427 "Not clear this cell type exists. Can't call it a cortical adrenal cell because of different germ layer origin.") AnnotationAssertion(rdfs:label obo:CL_1000427 "adrenal cortex chromaffin cell") EquivalentClasses(obo:CL_1000427 ObjectIntersectionOf(obo:CL_0000166 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001235))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000427 obo:CL_0000166) +SubClassOf(obo:CL_1000427 obo:CL_1000426) +SubClassOf(obo:CL_1000427 obo:CL_1001601) # Class: obo:CL_1000428 (stem cell of epidermis) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_1000428 "A somatic stem cell that is part of the epidermis.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000428 "FMA:70541") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_1000428 "ZFA:0007122") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:70541") oboInOwl:hasExactSynonym obo:CL_1000428 "epidermal stem cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000428 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_1000428 "stem cell of epidermis") EquivalentClasses(obo:CL_1000428 ObjectIntersectionOf(obo:CL_0000723 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001003))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000428 obo:CL_0000723) +SubClassOf(obo:CL_1000428 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001003)) # Class: obo:CL_1000429 (obo:CL_1000429) @@ -28531,6 +32062,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1000432 cl:eye_upper_slim) AnnotationAssertion(rdfs:label obo:CL_1000432 "conjunctival epithelial cell") EquivalentClasses(obo:CL_1000432 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001811))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000432 obo:CL_0000066) +SubClassOf(obo:CL_1000432 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001811)) # Class: obo:CL_1000433 (epithelial cell of lacrimal canaliculus) @@ -28538,6 +32070,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000433 "FMA:70553") AnnotationAssertion(rdfs:label obo:CL_1000433 "epithelial cell of lacrimal canaliculus") EquivalentClasses(obo:CL_1000433 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001770))) +SubClassOf(obo:CL_1000433 obo:CL_0000066) +SubClassOf(obo:CL_1000433 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001770)) # Class: obo:CL_1000434 (epithelial cell of external acoustic meatus) @@ -28545,6 +32079,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000434 "FMA:70555") AnnotationAssertion(rdfs:label obo:CL_1000434 "epithelial cell of external acoustic meatus") EquivalentClasses(obo:CL_1000434 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001352))) +SubClassOf(obo:CL_1000434 obo:CL_0000066) +SubClassOf(obo:CL_1000434 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001352)) # Class: obo:CL_1000435 (epithelial cell of lacrimal drainage system) @@ -28554,6 +32090,7 @@ AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_1000435 "epithelial cell o AnnotationAssertion(rdfs:label obo:CL_1000435 "epithelial cell of lacrimal drainage system") EquivalentClasses(obo:CL_1000435 ObjectIntersectionOf(obo:CL_0000068 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001850))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000435 obo:CL_0000072) +SubClassOf(obo:CL_1000435 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001850)) # Class: obo:CL_1000436 (epithelial cell of lacrimal sac) @@ -28562,6 +32099,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000436 "FMA:70560") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000436 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_1000436 "epithelial cell of lacrimal sac") EquivalentClasses(obo:CL_1000436 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001351))) +SubClassOf(obo:CL_1000436 obo:CL_1000437) +SubClassOf(obo:CL_1000436 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001351)) # Class: obo:CL_1000437 (epithelial cell of nasolacrimal duct) @@ -28569,7 +32108,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000437 "FMA:70561") AnnotationAssertion(rdfs:label obo:CL_1000437 "epithelial cell of nasolacrimal duct") EquivalentClasses(obo:CL_1000437 ObjectIntersectionOf(obo:CL_0000072 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002392))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000437 obo:CL_0000072) +SubClassOf(obo:CL_1000437 obo:CL_1000435) +SubClassOf(obo:CL_1000437 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002392)) # Class: obo:CL_1000438 (epithelial cell of wall of inferior part of anal canal) @@ -28604,6 +32144,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000442 "FMA:70598") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:70598") oboInOwl:hasExactSynonym obo:CL_1000442 "epithelial cell of vesical trigone") AnnotationAssertion(rdfs:label obo:CL_1000442 "urothelial cell of trigone of urinary bladder") EquivalentClasses(obo:CL_1000442 ObjectIntersectionOf(obo:CL_0000731 ObjectSomeValuesFrom(obo:BFO_0000050 ObjectIntersectionOf(obo:UBERON_0000365 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001257))))) +SubClassOf(obo:CL_1000442 obo:CL_1001428) +SubClassOf(obo:CL_1000442 ObjectSomeValuesFrom(obo:BFO_0000050 ObjectIntersectionOf(obo:UBERON_0000365 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001257)))) # Class: obo:CL_1000443 (ciliary muscle cell) @@ -28615,6 +32157,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1000443 cl:eye_upper_slim) AnnotationAssertion(rdfs:label obo:CL_1000443 "ciliary muscle cell") EquivalentClasses(obo:CL_1000443 ObjectIntersectionOf(obo:CL_0000192 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001775))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000443 obo:CL_0000192) +SubClassOf(obo:CL_1000443 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001775)) # Class: obo:CL_1000444 (mesothelial cell of anterior chamber of eye) @@ -28622,6 +32165,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000444 "FMA:70615") AnnotationAssertion(rdfs:label obo:CL_1000444 "mesothelial cell of anterior chamber of eye") EquivalentClasses(obo:CL_1000444 ObjectIntersectionOf(obo:CL_0000077 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001766))) +SubClassOf(obo:CL_1000444 obo:CL_0000077) +SubClassOf(obo:CL_1000444 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001766)) # Class: obo:CL_1000445 (myoepithelial cell of dilator pupillae) @@ -28630,6 +32175,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000445 "FMA:70619") AnnotationAssertion(rdfs:label obo:CL_1000445 "myoepithelial cell of dilator pupillae") EquivalentClasses(obo:CL_1000445 ObjectIntersectionOf(obo:CL_0000185 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001608))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000445 obo:CL_0000185) +SubClassOf(obo:CL_1000445 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001608)) # Class: obo:CL_1000446 (obo:CL_1000446) @@ -28646,6 +32192,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1000447 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_1000447 "epithelial cell of stratum germinativum of esophagus") EquivalentClasses(obo:CL_1000447 ObjectIntersectionOf(obo:CL_0000646 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001976))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000447 obo:CL_0000646) +SubClassOf(obo:CL_1000447 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001976)) # Class: obo:CL_1000448 (epithelial cell of sweat gland) @@ -28654,6 +32201,9 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000448 "FMA:70952") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000448 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_1000448 "epithelial cell of sweat gland") EquivalentClasses(obo:CL_1000448 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001820))) +SubClassOf(obo:CL_1000448 obo:CL_0000362) +SubClassOf(obo:CL_1000448 obo:CL_0002308) +SubClassOf(obo:CL_1000448 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001820)) # Class: obo:CL_1000449 (epithelial cell of nephron) @@ -28662,6 +32212,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000449 "FMA:70965") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000449 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_1000449 "epithelial cell of nephron") EquivalentClasses(obo:CL_1000449 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001285))) +SubClassOf(obo:CL_1000449 obo:CL_0002518) +SubClassOf(obo:CL_1000449 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001285)) # Class: obo:CL_1000450 (epithelial cell of glomerular capsule) @@ -28675,7 +32227,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1000450 cl:kidney_upper_slim) AnnotationAssertion(rdfs:label obo:CL_1000450 "epithelial cell of glomerular capsule") EquivalentClasses(obo:CL_1000450 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001230))) SubClassOf(obo:CL_1000450 obo:CL_1000510) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000450 obo:CL_1000612) +SubClassOf(obo:CL_1000450 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001230)) # Class: obo:CL_1000451 (obsolete epithelial cell of visceral layer of glomerular capsule) @@ -28694,7 +32246,8 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1000452 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_1000452 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000452 "parietal epithelial cell") EquivalentClasses(obo:CL_1000452 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005750))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000452 obo:CL_0000066) +SubClassOf(obo:CL_1000452 obo:CL_1000450) +SubClassOf(obo:CL_1000452 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005750)) # Class: obo:CL_1000453 (epithelial cell of intermediate tubule) @@ -28702,6 +32255,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000453 "FMA:70980") AnnotationAssertion(rdfs:label obo:CL_1000453 "epithelial cell of intermediate tubule") EquivalentClasses(obo:CL_1000453 ObjectIntersectionOf(obo:CL_1000494 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004136))) +SubClassOf(obo:CL_1000453 obo:CL_1000909) +SubClassOf(obo:CL_1000453 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004136)) # Class: obo:CL_1000454 (kidney collecting duct epithelial cell) @@ -28716,7 +32271,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1000454 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000454 "kidney collecting duct epithelial cell") EquivalentClasses(obo:CL_1000454 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001232))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000454 obo:CL_0000072) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000454 obo:CL_0002518) +SubClassOf(obo:CL_1000454 obo:CL_1000449) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000454 obo:CL_1001225) # Class: obo:CL_1000456 (mesothelial cell of parietal peritoneum) @@ -28725,6 +32280,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000456 "FMA:72142") AnnotationAssertion(rdfs:label obo:CL_1000456 "mesothelial cell of parietal peritoneum") EquivalentClasses(obo:CL_1000456 ObjectIntersectionOf(obo:CL_0000077 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001366))) +SubClassOf(obo:CL_1000456 obo:CL_1000490) +SubClassOf(obo:CL_1000456 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001366)) # Class: obo:CL_1000457 (mesothelial cell of visceral peritoneum) @@ -28734,6 +32291,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000457 "FMA:72143") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000457 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000457 "mesothelial cell of visceral peritoneum") EquivalentClasses(obo:CL_1000457 ObjectIntersectionOf(obo:CL_0000077 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001178))) +SubClassOf(obo:CL_1000457 obo:CL_1000490) +SubClassOf(obo:CL_1000457 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001178)) # Class: obo:CL_1000458 (melanocyte of skin) @@ -28747,6 +32306,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1000458 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000458 "melanocyte of skin") EquivalentClasses(obo:CL_1000458 ObjectIntersectionOf(obo:CL_0000148 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002097))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000458 obo:CL_0000148) +SubClassOf(obo:CL_1000458 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002097)) # Class: obo:CL_1000459 (obo:CL_1000459) @@ -28785,6 +32345,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000465 "FMA:74319") AnnotationAssertion(rdfs:label obo:CL_1000465 "chromaffin cell of ovary") EquivalentClasses(obo:CL_1000465 ObjectIntersectionOf(obo:CL_0000166 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000992))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000465 obo:CL_0000166) +SubClassOf(obo:CL_1000465 obo:CL_2000064) # Class: obo:CL_1000466 (chromaffin cell of right ovary) @@ -28792,7 +32353,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000466 "FMA:74320") AnnotationAssertion(rdfs:label obo:CL_1000466 "chromaffin cell of right ovary") EquivalentClasses(obo:CL_1000466 ObjectIntersectionOf(obo:CL_0000166 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002118))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000466 obo:CL_0000166) +SubClassOf(obo:CL_1000466 obo:CL_1000465) +SubClassOf(obo:CL_1000466 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002118)) # Class: obo:CL_1000467 (chromaffin cell of left ovary) @@ -28800,7 +32362,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000467 "FMA:74321") AnnotationAssertion(rdfs:label obo:CL_1000467 "chromaffin cell of left ovary") EquivalentClasses(obo:CL_1000467 ObjectIntersectionOf(obo:CL_0000166 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002119))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000467 obo:CL_0000166) +SubClassOf(obo:CL_1000467 obo:CL_1000465) +SubClassOf(obo:CL_1000467 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002119)) # Class: obo:CL_1000468 (myoepithelial cell of acinus of lactiferous gland) @@ -28808,7 +32371,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000468 "FMA:74469") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:74469") oboInOwl:hasExactSynonym obo:CL_1000468 "basal cell of acinus of lactiferous gland") AnnotationAssertion(rdfs:label obo:CL_1000468 "myoepithelial cell of acinus of lactiferous gland") -SubClassOf(obo:CL_1000468 obo:CL_0000185) +SubClassOf(obo:CL_1000468 obo:CL_0002324) SubClassOf(obo:CL_1000468 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001912)) # Class: obo:CL_1000469 (myoepithelial cell of main lactiferous duct) @@ -28875,7 +32438,6 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_1000477 "pacemaker cell of s AnnotationAssertion(oboInOwl:inSubset obo:CL_1000477 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000477 "cardiac pacemaker cell of sinoatrial node") SubClassOf(obo:CL_1000477 obo:CL_1000409) -SubClassOf(obo:CL_1000477 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002351)) # Class: obo:CL_1000478 (transitional myocyte of sinoatrial node) @@ -28885,6 +32447,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_1000478 "transitinal myocyte AnnotationAssertion(rdfs:label obo:CL_1000478 "transitional myocyte of sinoatrial node") EquivalentClasses(obo:CL_1000478 ObjectIntersectionOf(obo:CL_0002073 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002351))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000478 obo:CL_0002073) +SubClassOf(obo:CL_1000478 obo:CL_1000409) # Class: obo:CL_1000479 (Purkinje myocyte of atrioventricular node) @@ -28893,6 +32456,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000479 "FMA:83386") AnnotationAssertion(rdfs:label obo:CL_1000479 "Purkinje myocyte of atrioventricular node") EquivalentClasses(obo:CL_1000479 ObjectIntersectionOf(obo:CL_0002068 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002352))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000479 obo:CL_0002068) +SubClassOf(obo:CL_1000479 obo:CL_1000410) # Class: obo:CL_1000480 (transitional myocyte of internodal tract) @@ -28901,6 +32465,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000480 "FMA:83387") AnnotationAssertion(rdfs:label obo:CL_1000480 "transitional myocyte of internodal tract") EquivalentClasses(obo:CL_1000480 ObjectIntersectionOf(obo:CL_0002073 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0009966))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000480 obo:CL_0002073) +SubClassOf(obo:CL_1000480 obo:CL_0002096) # Class: obo:CL_1000481 (transitional myocyte of atrioventricular bundle) @@ -28909,6 +32474,9 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000481 "FMA:83388") AnnotationAssertion(rdfs:label obo:CL_1000481 "transitional myocyte of atrioventricular bundle") EquivalentClasses(obo:CL_1000481 ObjectIntersectionOf(obo:CL_0002073 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002353))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000481 obo:CL_0002073) +SubClassOf(obo:CL_1000481 obo:CL_0008009) +SubClassOf(obo:CL_1000481 obo:CL_0010005) +SubClassOf(obo:CL_1000481 obo:CL_2000046) # Class: obo:CL_1000482 (myocardial endocrine cell of interventricular septum) @@ -28917,6 +32485,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000482 "FMA:83390") AnnotationAssertion(rdfs:label obo:CL_1000482 "myocardial endocrine cell of interventricular septum") EquivalentClasses(obo:CL_1000482 ObjectIntersectionOf(obo:CL_0002074 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002094))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000482 obo:CL_0002074) +SubClassOf(obo:CL_1000482 obo:CL_2000022) +SubClassOf(obo:CL_1000482 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002094)) # Class: obo:CL_1000483 (Purkinje myocyte of internodal tract) @@ -28925,6 +32495,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000483 "FMA:83392") AnnotationAssertion(rdfs:label obo:CL_1000483 "Purkinje myocyte of internodal tract") EquivalentClasses(obo:CL_1000483 ObjectIntersectionOf(obo:CL_0002068 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0009966))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000483 obo:CL_0002068) +SubClassOf(obo:CL_1000483 obo:CL_0002096) # Class: obo:CL_1000484 (Purkinje myocyte of atrioventricular bundle) @@ -28933,6 +32504,9 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000484 "FMA:83393") AnnotationAssertion(rdfs:label obo:CL_1000484 "Purkinje myocyte of atrioventricular bundle") EquivalentClasses(obo:CL_1000484 ObjectIntersectionOf(obo:CL_0002068 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002353))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000484 obo:CL_0002068) +SubClassOf(obo:CL_1000484 obo:CL_0008009) +SubClassOf(obo:CL_1000484 obo:CL_0010005) +SubClassOf(obo:CL_1000484 obo:CL_2000046) # Class: obo:CL_1000486 (basal cell of urothelium) @@ -28958,16 +32532,20 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1000487 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000487 "smooth muscle cell of prostate") EquivalentClasses(obo:CL_1000487 ObjectIntersectionOf(obo:CL_0000192 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002367))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000487 obo:CL_0000192) +SubClassOf(obo:CL_1000487 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002367)) # Class: obo:CL_1000488 (cholangiocyte) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:16550043") Annotation(oboInOwl:hasDbXref "PMID:18356246") obo:IAO_0000115 obo:CL_1000488 "An epithelial cell that is part of the bile duct. Cholangiocytes contribute to bile secretion via net release of bicarbonate and water. They are cuboidal epithelium in the small interlobular bile ducts, but become columnar and mucus secreting in larger bile ducts approaching the porta hepatis and the extrahepatic ducts.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000488 "FMA:86481") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_1000488 "ZFA:0009397") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_1000488 "epithelial cell of bile duct") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000488 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_1000488 "cholangiocyte") EquivalentClasses(obo:CL_1000488 ObjectIntersectionOf(obo:CL_0000069 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002394) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0015106))) +SubClassOf(obo:CL_1000488 obo:BFO_0000002) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000488 obo:CL_0000069) +SubClassOf(obo:CL_1000488 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002394)) SubClassOf(obo:CL_1000488 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0005026)) SubClassOf(obo:CL_1000488 ObjectSomeValuesFrom(obo:RO_0002215 ObjectIntersectionOf(obo:GO_0015106 ObjectSomeValuesFrom(obo:BFO_0000050 obo:GO_0032782)))) @@ -28980,6 +32558,8 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1000489 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000489 "reticular cell of splenic cord") EquivalentClasses(obo:CL_1000489 ObjectIntersectionOf(obo:CL_0000432 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001266))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000489 obo:CL_0000432) +SubClassOf(obo:CL_1000489 obo:CL_2000051) +SubClassOf(obo:CL_1000489 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001266)) # Class: obo:CL_1000490 (mesothelial cell of peritoneum) @@ -28988,6 +32568,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000490 "FMA:86736") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:86736") oboInOwl:hasExactSynonym obo:CL_1000490 "peritoneal mesothelial cell") AnnotationAssertion(rdfs:label obo:CL_1000490 "mesothelial cell of peritoneum") EquivalentClasses(obo:CL_1000490 ObjectIntersectionOf(obo:CL_0000077 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002358))) +SubClassOf(obo:CL_1000490 obo:CL_0000077) +SubClassOf(obo:CL_1000490 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002358)) # Class: obo:CL_1000491 (mesothelial cell of pleura) @@ -28997,6 +32579,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:86737") oboInOwl:hasExact AnnotationAssertion(oboInOwl:inSubset obo:CL_1000491 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_1000491 "mesothelial cell of pleura") EquivalentClasses(obo:CL_1000491 ObjectIntersectionOf(obo:CL_0000077 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000977))) +SubClassOf(obo:CL_1000491 obo:CL_0000077) +SubClassOf(obo:CL_1000491 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000977)) # Class: obo:CL_1000492 (mesothelial cell of parietal pleura) @@ -29004,6 +32588,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000492 "FMA:86738") AnnotationAssertion(rdfs:label obo:CL_1000492 "mesothelial cell of parietal pleura") EquivalentClasses(obo:CL_1000492 ObjectIntersectionOf(obo:CL_0000077 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002400))) +SubClassOf(obo:CL_1000492 obo:CL_1000491) +SubClassOf(obo:CL_1000492 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002400)) # Class: obo:CL_1000493 (mesothelial cell of visceral pleura) @@ -29014,6 +32600,9 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1000493 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_1000493 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000493 "mesothelial cell of visceral pleura") EquivalentClasses(obo:CL_1000493 ObjectIntersectionOf(obo:CL_0000077 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002401))) +SubClassOf(obo:CL_1000493 obo:CL_0000082) +SubClassOf(obo:CL_1000493 obo:CL_1000491) +SubClassOf(obo:CL_1000493 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002401)) # Class: obo:CL_1000494 (nephron tubule epithelial cell) @@ -29025,6 +32614,9 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1000494 cl:cellxgene_subset) AnnotationAssertion(rdfs:comment obo:CL_1000494 "This needs to be further defined as a juxtamedullary nephron. Will request the juxtamedullary nephron tubule class from UBERON.") AnnotationAssertion(rdfs:label obo:CL_1000494 "nephron tubule epithelial cell") EquivalentClasses(obo:CL_1000494 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004810))) +SubClassOf(obo:CL_1000494 obo:CL_1000449) +SubClassOf(obo:CL_1000494 obo:CL_1000507) +SubClassOf(obo:CL_1000494 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004810)) # Class: obo:CL_1000495 (small intestine goblet cell) @@ -29036,31 +32628,42 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:86929") oboInOwl:hasExact AnnotationAssertion(oboInOwl:inSubset obo:CL_1000495 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_1000495 "small intestine goblet cell") EquivalentClasses(obo:CL_1000495 ObjectIntersectionOf(obo:CL_0000160 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002108))) -SubClassOf(obo:CL_1000495 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001902)) +SubClassOf(obo:CL_1000495 obo:CL_0019031) +SubClassOf(obo:CL_1000495 obo:CL_1001598) # Class: obo:CL_1000497 (kidney cell) AnnotationAssertion(obo:IAO_0000115 obo:CL_1000497 "A cell that is part of a kidney.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000497 "KUPO:0001010") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_1000497 "ZFA:0009389") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000497 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_1000497 "kidney cell") EquivalentClasses(obo:CL_1000497 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002113))) +SubClassOf(obo:CL_1000497 obo:CL_0000000) +SubClassOf(obo:CL_1000497 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002113)) # Class: obo:CL_1000500 (kidney interstitial cell) AnnotationAssertion(obo:IAO_0000115 obo:CL_1000500 "A cell that is part of kidney interstitium.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000500 "KUPO:0001013") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_1000500 "ZFA:0009390") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000500 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_1000500 cl:kidney_upper_slim) AnnotationAssertion(rdfs:label obo:CL_1000500 "kidney interstitial cell") EquivalentClasses(obo:CL_1000500 ObjectIntersectionOf(obo:CL_1000497 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005215))) +SubClassOf(obo:CL_1000500 obo:CL_1000497) +SubClassOf(obo:CL_1000500 obo:CL_4030031) +SubClassOf(obo:CL_1000500 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005215)) # Class: obo:CL_1000504 (kidney medulla cell) -AnnotationAssertion(obo:IAO_0000115 obo:CL_1000504 "A cell that is part of a renal medulla.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:22343825") obo:IAO_0000115 obo:CL_1000504 "A cell that is part of a renal medulla.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000504 "KUPO:0001017") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_1000504 "ZFA:0009391") AnnotationAssertion(rdfs:label obo:CL_1000504 "kidney medulla cell") EquivalentClasses(obo:CL_1000504 ObjectIntersectionOf(obo:CL_1000497 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000362))) +SubClassOf(obo:CL_1000504 obo:CL_1000497) +SubClassOf(obo:CL_1000504 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000362)) # Class: obo:CL_1000505 (kidney pelvis cell) @@ -29069,6 +32672,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000505 "KUPO:0001018") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000505 cl:kidney_upper_slim) AnnotationAssertion(rdfs:label obo:CL_1000505 "kidney pelvis cell") EquivalentClasses(obo:CL_1000505 ObjectIntersectionOf(obo:CL_1000497 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001224))) +SubClassOf(obo:CL_1000505 obo:CL_1000497) +SubClassOf(obo:CL_1000505 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001224)) # Class: obo:CL_1000507 (kidney tubule cell) @@ -29077,14 +32682,17 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000507 "KUPO:0001020") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000507 cl:kidney_upper_slim) AnnotationAssertion(rdfs:label obo:CL_1000507 "kidney tubule cell") EquivalentClasses(obo:CL_1000507 ObjectIntersectionOf(obo:CL_1000497 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001231))) +SubClassOf(obo:CL_1000507 obo:CL_1000497) +SubClassOf(obo:CL_1000507 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001231)) # Class: obo:CL_1000510 (kidney glomerular epithelial cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000510 "Any kidney epithelial cell that is part of some glomerular epithelium.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000510 "KUPO:0001023") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000510 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_1000510 "kidney glomerular epithelial cell") EquivalentClasses(obo:CL_1000510 ObjectIntersectionOf(obo:CL_0002518 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004188))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000510 obo:CL_0002518) +SubClassOf(obo:CL_1000510 obo:CL_1000746) SubClassOf(obo:CL_1000510 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004188)) # Class: obo:CL_1000546 (kidney medulla collecting duct epithelial cell) @@ -29094,6 +32702,9 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000546 "KUPO:0001060") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000546 cl:kidney_upper_slim) AnnotationAssertion(rdfs:label obo:CL_1000546 "kidney medulla collecting duct epithelial cell") EquivalentClasses(obo:CL_1000546 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005185))) +SubClassOf(obo:CL_1000546 obo:CL_1000454) +SubClassOf(obo:CL_1000546 obo:CL_1000504) +SubClassOf(obo:CL_1000546 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005185)) # Class: obo:CL_1000547 (kidney inner medulla collecting duct epithelial cell) @@ -29102,6 +32713,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000547 "KUPO:0001061") AnnotationAssertion(rdfs:label obo:CL_1000547 "kidney inner medulla collecting duct epithelial cell") EquivalentClasses(obo:CL_1000547 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004205))) SubClassOf(obo:CL_1000547 obo:CL_1000546) +SubClassOf(obo:CL_1000547 obo:CL_1000617) +SubClassOf(obo:CL_1000547 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004205)) # Class: obo:CL_1000548 (kidney outer medulla collecting duct epithelial cell) @@ -29110,6 +32723,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000548 "KUPO:0001062") AnnotationAssertion(rdfs:label obo:CL_1000548 "kidney outer medulla collecting duct epithelial cell") EquivalentClasses(obo:CL_1000548 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004204))) SubClassOf(obo:CL_1000548 obo:CL_1000546) +SubClassOf(obo:CL_1000548 obo:CL_1000616) +SubClassOf(obo:CL_1000548 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004204)) # Class: obo:CL_1000549 (kidney cortex collecting duct epithelial cell) @@ -29117,22 +32732,27 @@ AnnotationAssertion(obo:IAO_0000115 obo:CL_1000549 "An epithelial cell that is p AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000549 "KUPO:0001063") AnnotationAssertion(rdfs:label obo:CL_1000549 "kidney cortex collecting duct epithelial cell") EquivalentClasses(obo:CL_1000549 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004203))) +SubClassOf(obo:CL_1000549 obo:CL_0002584) +SubClassOf(obo:CL_1000549 obo:CL_1000454) +SubClassOf(obo:CL_1000549 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004203)) # Class: obo:CL_1000550 (kidney papillary duct principal epithelial cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000550 "Any kidney cell that is part of some papillary duct.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000550 "KUPO:0001064") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000550 cl:kidney_upper_slim) AnnotationAssertion(rdfs:label obo:CL_1000550 "kidney papillary duct principal epithelial cell") EquivalentClasses(obo:CL_1000550 ObjectIntersectionOf(obo:CL_1000497 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005167))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000550 obo:CL_1000497) +SubClassOf(obo:CL_1000550 obo:CL_1001225) SubClassOf(obo:CL_1000550 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005167)) # Class: obo:CL_1000596 (inner renal cortex cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000596 "Any kidney cell that is part of some juxtamedullary cortex.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000596 "KUPO:0001111") AnnotationAssertion(rdfs:label obo:CL_1000596 "inner renal cortex cell") EquivalentClasses(obo:CL_1000596 ObjectIntersectionOf(obo:CL_1000497 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005271))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000596 obo:CL_1000497) +SubClassOf(obo:CL_1000596 obo:CL_0002681) SubClassOf(obo:CL_1000596 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005271)) # Class: obo:CL_1000597 (papillary tips cell) @@ -29144,52 +32764,65 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1000597 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_1000597 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000597 "papillary tips cell") EquivalentClasses(obo:CL_1000597 ObjectIntersectionOf(obo:CL_1000497 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0009095))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000597 obo:CL_1000497) +SubClassOf(obo:CL_1000597 obo:CL_1000505) +SubClassOf(obo:CL_1000597 obo:CL_1000617) SubClassOf(obo:CL_1000597 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0009095)) # Class: obo:CL_1000600 (lower urinary tract cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000600 "Any cell that is part of some lower urinary tract.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000600 "KUPO:0001115") AnnotationAssertion(rdfs:label obo:CL_1000600 "lower urinary tract cell") EquivalentClasses(obo:CL_1000600 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001556))) +SubClassOf(obo:CL_1000600 obo:CL_0000000) SubClassOf(obo:CL_1000600 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001556)) # Class: obo:CL_1000601 (ureteral cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000601 "Any cell that is part of some ureter.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000601 "KUPO:0001116") AnnotationAssertion(rdfs:label obo:CL_1000601 "ureteral cell") EquivalentClasses(obo:CL_1000601 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000056))) +SubClassOf(obo:CL_1000601 obo:CL_0000000) SubClassOf(obo:CL_1000601 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000056)) # Class: obo:CL_1000606 (kidney nerve cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000606 "Any neuron that has its soma located in some kidney.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000606 "KUPO:0001015") AnnotationAssertion(rdfs:label obo:CL_1000606 "kidney nerve cell") EquivalentClasses(obo:CL_1000606 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002113))) +SubClassOf(obo:CL_1000606 obo:BFO_0000002) SubClassOf(obo:CL_1000606 obo:CL_1000500) SubClassOf(obo:CL_1000606 obo:CL_2000032) +SubClassOf(obo:CL_1000606 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002113)) # Class: obo:CL_1000612 (kidney corpuscule cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000612 "Any renal cortical epithelial cell that is part of some renal corpuscle.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000612 "KUPO:0001021") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000612 cl:kidney_upper_slim) AnnotationAssertion(rdfs:label obo:CL_1000612 "kidney corpuscule cell") EquivalentClasses(obo:CL_1000612 ObjectIntersectionOf(obo:CL_0002584 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001229))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000612 obo:CL_0002584) +SubClassOf(obo:CL_1000612 obo:CL_1000449) SubClassOf(obo:CL_1000612 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001229)) # Class: obo:CL_1000615 (kidney cortex tubule cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000615 "Any kidney tubule cell that is part of some renal cortex tubule.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000615 "KUPO:0001024") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000615 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_1000615 "kidney cortex tubule cell") EquivalentClasses(obo:CL_1000615 ObjectIntersectionOf(obo:CL_1000507 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0006853))) SubClassOf(obo:CL_1000615 obo:CL_0002584) +SubClassOf(obo:CL_1000615 obo:CL_1000449) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000615 obo:CL_1000507) SubClassOf(obo:CL_1000615 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0006853)) # Class: obo:CL_1000616 (kidney outer medulla cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000616 "Any kidney medulla cell that is part of some outer medulla of kidney.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000616 "KUPO:0001025") AnnotationAssertion(rdfs:label obo:CL_1000616 "kidney outer medulla cell") EquivalentClasses(obo:CL_1000616 ObjectIntersectionOf(obo:CL_1000504 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001293))) @@ -29198,6 +32831,7 @@ SubClassOf(obo:CL_1000616 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000129 # Class: obo:CL_1000617 (kidney inner medulla cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000617 "Any kidney medulla cell that is part of some inner medulla of kidney.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000617 "KUPO:0001026") AnnotationAssertion(rdfs:label obo:CL_1000617 "kidney inner medulla cell") EquivalentClasses(obo:CL_1000617 ObjectIntersectionOf(obo:CL_1000504 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001294))) @@ -29206,6 +32840,7 @@ SubClassOf(obo:CL_1000617 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000129 # Class: obo:CL_1000618 (juxtaglomerular complex cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000618 "Any kidney cortical cell that is part of some juxtaglomerular apparatus.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000618 "KUPO:0001028") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GO:0072052") oboInOwl:hasExactSynonym obo:CL_1000618 "juxtaglomerulus cell") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000618 cl:kidney_upper_slim) @@ -29216,6 +32851,7 @@ SubClassOf(obo:CL_1000618 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000230 # Class: obo:CL_1000681 (kidney cortex interstitial cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:18575881") obo:IAO_0000115 obo:CL_1000681 "A cell that is part of an interstitial compartment of a renal cortex.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000681 "KUPO:0001091") AnnotationAssertion(rdfs:label obo:CL_1000681 "kidney cortex interstitial cell") EquivalentClasses(obo:CL_1000681 ObjectIntersectionOf(obo:CL_1000500 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005270))) @@ -29225,6 +32861,7 @@ SubClassOf(obo:CL_1000681 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000527 # Class: obo:CL_1000682 (kidney medulla interstitial cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:21359760") obo:IAO_0000115 obo:CL_1000682 "A cell that is part of an interstitum of a renal medulla.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000682 "KUPO:0001092") AnnotationAssertion(rdfs:label obo:CL_1000682 "kidney medulla interstitial cell") EquivalentClasses(obo:CL_1000682 ObjectIntersectionOf(obo:CL_1000500 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005211))) @@ -29243,12 +32880,15 @@ SubClassOf(obo:CL_1000691 obo:CL_1000500) # Class: obo:CL_1000692 (kidney interstitial fibroblast) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:10559635") obo:IAO_0000115 obo:CL_1000692 "A fibroblast that is part of an interstitial compartment of a kidney.") AnnotationAssertion(obo:RO_0002175 obo:CL_1000692 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000692 "KUPO:0001102") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000692 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_1000692 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000692 "kidney interstitial fibroblast") EquivalentClasses(obo:CL_1000692 ObjectIntersectionOf(obo:CL_0000057 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005215))) +SubClassOf(obo:CL_1000692 obo:CL_0000057) +SubClassOf(obo:CL_1000692 obo:CL_1000500) # Class: obo:CL_1000693 (kidney interstitial fibrocyte) @@ -29291,6 +32931,7 @@ SubClassOf(obo:CL_1000698 obo:CL_1000500) # Class: obo:CL_1000699 (kidney resident dendritic cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:25266210") obo:IAO_0000115 obo:CL_1000699 "A resident-dendritic cell that is part of a kidney.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000699 "KUPO:0001110") AnnotationAssertion(rdfs:label obo:CL_1000699 "kidney resident dendritic cell") SubClassOf(obo:CL_1000699 obo:CL_0001007) @@ -29298,6 +32939,7 @@ SubClassOf(obo:CL_1000699 obo:CL_1000500) # Class: obo:CL_1000702 (kidney pelvis smooth muscle cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000702 "Any smooth muscle cell that is part of some kidney pelvis smooth muscle.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000702 "KUPO:0001113") AnnotationAssertion(rdfs:label obo:CL_1000702 "kidney pelvis smooth muscle cell") EquivalentClasses(obo:CL_1000702 ObjectIntersectionOf(obo:CL_0000192 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004227))) @@ -29307,6 +32949,7 @@ SubClassOf(obo:CL_1000702 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000422 # Class: obo:CL_1000703 (kidney pelvis urothelial cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000703 "Any kidney epithelial cell that is part of some kidney pelvis urothelium.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000703 "KUPO:0001114") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000703 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_1000703 "kidney pelvis urothelial cell") @@ -29318,6 +32961,7 @@ SubClassOf(obo:CL_1000703 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000478 # Class: obo:CL_1000706 (ureter urothelial cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000706 "Any urothelial cell that is part of some urothelium of ureter.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000706 "KUPO:0001117") AnnotationAssertion(rdfs:label obo:CL_1000706 "ureter urothelial cell") EquivalentClasses(obo:CL_1000706 ObjectIntersectionOf(obo:CL_0000731 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001254))) @@ -29327,6 +32971,7 @@ SubClassOf(obo:CL_1000706 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000125 # Class: obo:CL_1000708 (ureter adventitial cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000708 "Any ureteral cell that is part of some adventitia of ureter.") AnnotationAssertion(obo:RO_0002175 obo:CL_1000708 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000708 "KUPO:0001119") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000708 core:human_reference_atlas) @@ -29339,25 +32984,25 @@ SubClassOf(obo:CL_1000708 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000125 # Class: obo:CL_1000714 (kidney cortex collecting duct principal cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000714 "Any renal principal cell that is part of some cortical collecting duct.") AnnotationAssertion(obo:RO_0002175 obo:CL_1000714 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000714 "KUPO:0001130") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000714 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000714 "kidney cortex collecting duct principal cell") EquivalentClasses(obo:CL_1000714 ObjectIntersectionOf(obo:CL_0005009 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004203))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000714 obo:CL_0005009) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000714 obo:CL_1000549) -SubClassOf(obo:CL_1000714 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004203)) +SubClassOf(obo:CL_1000714 obo:CL_1001431) # Class: obo:CL_1000715 (kidney cortex collecting duct intercalated cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000715 "Any renal intercalated cell that is part of some cortical collecting duct.") AnnotationAssertion(obo:RO_0002175 obo:CL_1000715 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000715 "KUPO:0001131") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000715 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000715 "kidney cortex collecting duct intercalated cell") EquivalentClasses(obo:CL_1000715 ObjectIntersectionOf(obo:CL_0005010 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004203))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000715 obo:CL_0005010) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000715 obo:CL_1000549) -SubClassOf(obo:CL_1000715 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004203)) +SubClassOf(obo:CL_1000715 obo:CL_1001432) # Class: obo:CL_1000716 (kidney outer medulla collecting duct principal cell) @@ -29367,9 +33012,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000716 "KUPO:0001132") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000716 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000716 "kidney outer medulla collecting duct principal cell") EquivalentClasses(obo:CL_1000716 ObjectIntersectionOf(obo:CL_0005009 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004204))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000716 obo:CL_0005009) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000716 obo:CL_1000548) -SubClassOf(obo:CL_1000716 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004204)) +SubClassOf(obo:CL_1000716 obo:CL_1001431) # Class: obo:CL_1000717 (kidney outer medulla collecting duct intercalated cell) @@ -29379,47 +33023,46 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000717 "KUPO:0001133") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000717 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000717 "kidney outer medulla collecting duct intercalated cell") EquivalentClasses(obo:CL_1000717 ObjectIntersectionOf(obo:CL_0005010 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004204))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000717 obo:CL_0005010) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000717 obo:CL_1000548) -SubClassOf(obo:CL_1000717 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004204)) +SubClassOf(obo:CL_1000717 obo:CL_1001432) # Class: obo:CL_1000718 (kidney inner medulla collecting duct principal cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000718 "Any renal principal cell that is part of some inner medullary collecting duct.") AnnotationAssertion(obo:RO_0002175 obo:CL_1000718 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000718 "KUPO:0001134") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000718 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000718 "kidney inner medulla collecting duct principal cell") EquivalentClasses(obo:CL_1000718 ObjectIntersectionOf(obo:CL_0005009 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004205))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000718 obo:CL_0005009) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000718 obo:CL_1000547) -SubClassOf(obo:CL_1000718 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004205)) +SubClassOf(obo:CL_1000718 obo:CL_1001431) # Class: obo:CL_1000719 (kidney inner medulla collecting duct intercalated cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000719 "Any renal intercalated cell that is part of some inner medullary collecting duct.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000719 "KUPO:0001135") AnnotationAssertion(rdfs:label obo:CL_1000719 "kidney inner medulla collecting duct intercalated cell") EquivalentClasses(obo:CL_1000719 ObjectIntersectionOf(obo:CL_0005010 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004205))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000719 obo:CL_0005010) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000719 obo:CL_1000547) -SubClassOf(obo:CL_1000719 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004205)) +SubClassOf(obo:CL_1000719 obo:CL_1001432) # Class: obo:CL_1000720 (kidney papillary duct intercalated cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000720 "Any renal intercalated cell that is part of some papillary duct.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000720 "KUPO:0001136") AnnotationAssertion(rdfs:label obo:CL_1000720 "kidney papillary duct intercalated cell") EquivalentClasses(obo:CL_1000720 ObjectIntersectionOf(obo:CL_0005010 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005167))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000720 obo:CL_0005010) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000720 obo:CL_1000550) -SubClassOf(obo:CL_1000720 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005167)) +SubClassOf(obo:CL_1000720 obo:CL_1001432) # Class: obo:CL_1000721 (kidney papillary duct principal cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000721 "Any renal principal cell that is part of some papillary duct.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000721 "KUPO:0001137") AnnotationAssertion(rdfs:label obo:CL_1000721 "kidney papillary duct principal cell") EquivalentClasses(obo:CL_1000721 ObjectIntersectionOf(obo:CL_0005009 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005167))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000721 obo:CL_0005009) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000721 obo:CL_1000550) -SubClassOf(obo:CL_1000721 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005167)) +SubClassOf(obo:CL_1000721 obo:CL_1001431) # Class: obo:CL_1000742 (glomerular mesangial cell) @@ -29430,23 +33073,25 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CL:cjm") oboInOwl:hasExactSyn AnnotationAssertion(oboInOwl:inSubset obo:CL_1000742 core:human_reference_atlas) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:9127003") Annotation(oboInOwl:hasDbXref "https://doi.org/10.1152/physrev.1998.78.3.723") rdfs:comment obo:CL_1000742 "Like smooth muscle, a glomerular mesangial cell is contractile and possesses the filaments actin and myosin. The contractile mechanism is also similar to that of smooth muscle, with Ca2+/calmodulin-activated myosin light-chain kinase instigating myosin-actin cross-bridge cycling. Mesangial cell phagocytosis of apoptotic neutrophils involves a novel CD36-independent, alpha(v)beta3/TSP-mediated mechanism that is uncoupled from chemokine secretion, emphasizing the injury-limiting potential of mesangial cell phagocytosis of apoptotic cells.") AnnotationAssertion(rdfs:label obo:CL_1000742 "glomerular mesangial cell") +SubClassOf(obo:CL_1000742 obo:CL_0000234) SubClassOf(obo:CL_1000742 obo:CL_0000650) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000742 obo:CL_1000612) +SubClassOf(obo:CL_1000742 obo:CL_1000746) +SubClassOf(obo:CL_1000742 obo:CL_1001318) SubClassOf(obo:CL_1000742 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002320)) -SubClassOf(obo:CL_1000742 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0006909)) SubClassOf(obo:CL_1000742 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0070252)) # Class: obo:CL_1000746 (glomerular cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000746 "Any kidney corpuscule cell that is part of some renal glomerulus.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000746 "KUPO:0001036") AnnotationAssertion(rdfs:label obo:CL_1000746 "glomerular cell") EquivalentClasses(obo:CL_1000746 ObjectIntersectionOf(obo:CL_1000612 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000074))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000746 obo:CL_0002584) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000746 obo:CL_1000612) SubClassOf(obo:CL_1000746 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000074)) # Class: obo:CL_1000768 (kidney connecting tubule epithelial cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000768 "Any nephron tubule epithelial cell that is part of some renal connecting tubule.") AnnotationAssertion(obo:RO_0002175 obo:CL_1000768 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000768 "KUPO:0001058") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000768 cl:cellxgene_subset) @@ -29460,6 +33105,7 @@ SubClassOf(obo:CL_1000768 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000509 # Class: obo:CL_1000803 (kidney inner medulla interstitial cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:21359760") obo:IAO_0000115 obo:CL_1000803 "A cell that is part of an interstitial compartment of an inner renal medulla.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000803 "KUPO:0001093") AnnotationAssertion(rdfs:label obo:CL_1000803 "kidney inner medulla interstitial cell") EquivalentClasses(obo:CL_1000803 ObjectIntersectionOf(obo:CL_1000682 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005214))) @@ -29469,6 +33115,7 @@ SubClassOf(obo:CL_1000803 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000521 # Class: obo:CL_1000804 (kidney outer medulla interstitial cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:8694267") obo:IAO_0000115 obo:CL_1000804 "A kidney cell that is part of an interstitial compartment of an outer renal medulla.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000804 "KUPO:0001094") AnnotationAssertion(rdfs:label obo:CL_1000804 "kidney outer medulla interstitial cell") EquivalentClasses(obo:CL_1000804 ObjectIntersectionOf(obo:CL_1000682 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005213))) @@ -29478,27 +33125,29 @@ SubClassOf(obo:CL_1000804 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000521 # Class: obo:CL_1000838 (kidney proximal convoluted tubule epithelial cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000838 "Any epithelial cell of proximal tubule that is part of some proximal convoluted tubule.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000838 "KUPO:0001045") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000838 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_1000838 "kidney proximal convoluted tubule epithelial cell") EquivalentClasses(obo:CL_1000838 ObjectIntersectionOf(obo:CL_0002306 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001287))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000838 obo:CL_0002306) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000838 obo:CL_1000615) SubClassOf(obo:CL_1000838 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001287)) # Class: obo:CL_1000839 (kidney proximal straight tubule epithelial cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000839 "Any epithelial cell of proximal tubule that is part of some proximal straight tubule.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000839 "KUPO:0001046") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000839 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_1000839 "kidney proximal straight tubule epithelial cell") EquivalentClasses(obo:CL_1000839 ObjectIntersectionOf(obo:CL_0002306 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001290))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000839 obo:CL_0002306) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000839 obo:CL_1000615) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000839 obo:CL_1000616) +SubClassOf(obo:CL_1000839 obo:CL_1001021) SubClassOf(obo:CL_1000839 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001290)) # Class: obo:CL_1000849 (kidney distal convoluted tubule epithelial cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000849 "Any epithelial cell of distal tubule that is part of some distal convoluted tubule.") AnnotationAssertion(obo:RO_0002175 obo:CL_1000849 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000849 "KUPO:0001056") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000849 cl:cellxgene_subset) @@ -29511,6 +33160,7 @@ SubClassOf(obo:CL_1000849 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000129 # Class: obo:CL_1000850 (macula densa epithelial cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000850 "Any epithelial cell of distal tubule that is part of some macula densa.") AnnotationAssertion(obo:RO_0002175 obo:CL_1000850 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000850 "KUPO:0001057") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000850 cl:cellxgene_subset) @@ -29518,15 +33168,16 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1000850 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000850 "macula densa epithelial cell") EquivalentClasses(obo:CL_1000850 ObjectIntersectionOf(obo:CL_0002305 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002335))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000850 obo:CL_0002305) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000850 obo:CL_0002584) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000850 obo:CL_1000618) SubClassOf(obo:CL_1000850 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002335)) # Class: obo:CL_1000854 (kidney blood vessel cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34843404") obo:IAO_0000115 obo:CL_1000854 "A blood vessel cell that is part of a kidney.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000854 "KUPO:0001014") AnnotationAssertion(rdfs:label obo:CL_1000854 "kidney blood vessel cell") -EquivalentClasses(obo:CL_1000854 ObjectIntersectionOf(obo:CL_1000504 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003517))) +EquivalentClasses(obo:CL_1000854 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003517))) +SubClassOf(obo:CL_1000854 obo:BFO_0000002) SubClassOf(obo:CL_1000854 obo:CL_0002584) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000854 obo:CL_1000504) SubClassOf(obo:CL_1000854 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003517)) @@ -29534,6 +33185,7 @@ SubClassOf(obo:CL_1000854 ObjectSomeValuesFrom(obo:RO_0000056 obo:GO_0008015)) # Class: obo:CL_1000891 (kidney arterial blood vessel cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000891 "Any kidney blood vessel cell that is part of some kidney arterial blood vessel.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000891 "KUPO:0001029") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000891 cl:kidney_upper_slim) AnnotationAssertion(rdfs:label obo:CL_1000891 "kidney arterial blood vessel cell") @@ -29543,6 +33195,7 @@ SubClassOf(obo:CL_1000891 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000364 # Class: obo:CL_1000892 (kidney capillary endothelial cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000892 "Any kidney blood vessel cell that is part of some kidney capillary.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000892 "KUPO:0001030") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000892 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_1000892 cl:kidney_upper_slim) @@ -29550,9 +33203,11 @@ AnnotationAssertion(rdfs:label obo:CL_1000892 "kidney capillary endothelial cell EquivalentClasses(obo:CL_1000892 ObjectIntersectionOf(obo:CL_1000854 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003527))) SubClassOf(obo:CL_1000892 obo:CL_0000071) SubClassOf(obo:CL_1000892 obo:CL_1000854) +SubClassOf(obo:CL_1000892 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003527)) # Class: obo:CL_1000893 (kidney venous blood vessel cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000893 "Any kidney blood vessel cell that is part of some renal vein.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000893 "KUPO:0001031") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000893 cl:kidney_upper_slim) AnnotationAssertion(rdfs:label obo:CL_1000893 "kidney venous blood vessel cell") @@ -29568,6 +33223,7 @@ AnnotationAssertion(owl:deprecated obo:CL_1000897 "true"^^xsd:boolean) # Class: obo:CL_1000909 (kidney loop of Henle epithelial cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000909 "Any nephron tubule epithelial cell that is part of some loop of Henle.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000909 "KUPO:0001047") AnnotationAssertion(oboInOwl:inSubset obo:CL_1000909 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_1000909 "kidney loop of Henle epithelial cell") @@ -29577,7 +33233,10 @@ SubClassOf(obo:CL_1000909 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000128 # Class: obo:CL_1000979 (ureter smooth muscle cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1000979 "Any smooth muscle cell that is part of some muscular coat of ureter.") +AnnotationAssertion(obo:RO_0002175 obo:CL_1000979 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000979 "KUPO:0001118") +AnnotationAssertion(oboInOwl:inSubset obo:CL_1000979 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1000979 "ureter smooth muscle cell") EquivalentClasses(obo:CL_1000979 ObjectIntersectionOf(obo:CL_0000192 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0006855))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000979 obo:CL_0000192) @@ -29586,46 +33245,54 @@ SubClassOf(obo:CL_1000979 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000685 # Class: obo:CL_1001005 (glomerular capillary endothelial cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001005 "Any kidney capillary endothelial cell that is part of some glomerular capillary endothelium.") AnnotationAssertion(obo:RO_0002175 obo:CL_1001005 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001005 "KUPO:0001037") AnnotationAssertion(oboInOwl:inSubset obo:CL_1001005 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_1001005 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1001005 "glomerular capillary endothelial cell") EquivalentClasses(obo:CL_1001005 ObjectIntersectionOf(obo:CL_1000892 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004294))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001005 obo:CL_1000746) +SubClassOf(obo:CL_1001005 obo:CL_0002144) +SubClassOf(obo:CL_1001005 obo:CL_0002188) +SubClassOf(obo:CL_1001005 obo:CL_1000510) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001005 obo:CL_1000892) SubClassOf(obo:CL_1001005 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004294)) # Class: obo:CL_1001006 (kidney afferent arteriole cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001006 "Any kidney arterial blood vessel cell that is part of some renal afferent arteriole.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001006 "KUPO:0001038") AnnotationAssertion(rdfs:label obo:CL_1001006 "kidney afferent arteriole cell") EquivalentClasses(obo:CL_1001006 ObjectIntersectionOf(obo:CL_1000891 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004639))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001006 obo:CL_0002584) +SubClassOf(obo:CL_1001006 obo:CL_1000612) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001006 obo:CL_1000891) SubClassOf(obo:CL_1001006 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004639)) # Class: obo:CL_1001009 (kidney efferent arteriole cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001009 "Any kidney arterial blood vessel cell that is part of some renal efferent arteriole.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001009 "KUPO:0001041") AnnotationAssertion(rdfs:label obo:CL_1001009 "kidney efferent arteriole cell") EquivalentClasses(obo:CL_1001009 ObjectIntersectionOf(obo:CL_1000891 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004640))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001009 obo:CL_0002584) +SubClassOf(obo:CL_1001009 obo:CL_1000612) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001009 obo:CL_1000891) SubClassOf(obo:CL_1001009 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004640)) # Class: obo:CL_1001016 (kidney loop of Henle ascending limb epithelial cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001016 "Any kidney loop of Henle epithelial cell that is part of some ascending limb of loop of Henle.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001016 "KUPO:0001048") AnnotationAssertion(oboInOwl:inSubset obo:CL_1001016 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_1001016 cl:kidney_upper_slim) AnnotationAssertion(rdfs:label obo:CL_1001016 "kidney loop of Henle ascending limb epithelial cell") EquivalentClasses(obo:CL_1001016 ObjectIntersectionOf(obo:CL_1000909 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005164))) +SubClassOf(obo:CL_1001016 obo:CL_0002305) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001016 obo:CL_1000909) SubClassOf(obo:CL_1001016 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005164)) # Class: obo:CL_1001021 (kidney loop of Henle descending limb epithelial cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001021 "Any kidney loop of Henle epithelial cell that is part of some descending limb of loop of Henle.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001021 "KUPO:0001053") AnnotationAssertion(oboInOwl:inSubset obo:CL_1001021 cl:kidney_upper_slim) AnnotationAssertion(rdfs:label obo:CL_1001021 "kidney loop of Henle descending limb epithelial cell") @@ -29642,35 +33309,37 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1001033 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_1001033 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1001033 "peritubular capillary endothelial cell") EquivalentClasses(obo:CL_1001033 ObjectIntersectionOf(obo:CL_1000892 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005272))) +SubClassOf(obo:CL_1001033 obo:CL_0002144) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001033 obo:CL_1000892) -SubClassOf(obo:CL_1001033 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005272)) SubClassOf(obo:CL_1001033 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0012441)) # Class: obo:CL_1001036 (vasa recta cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:12529271") Annotation(oboInOwl:hasDbXref "PMID:24381184") obo:IAO_0000115 obo:CL_1001036 "A cell that is part of a vasa recta.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001036 "KUPO:0001068") AnnotationAssertion(rdfs:label obo:CL_1001036 "vasa recta cell") EquivalentClasses(obo:CL_1001036 ObjectIntersectionOf(obo:CL_1000892 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004726))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001036 obo:CL_1000504) +SubClassOf(obo:CL_1001036 obo:CL_0002543) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001036 obo:CL_1000892) +SubClassOf(obo:CL_1001036 obo:CL_1000893) SubClassOf(obo:CL_1001036 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004726)) # Class: obo:CL_1001045 (kidney cortex artery cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001045 "Any kidney arterial blood vessel cell that is part of some renal cortex artery.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001045 "KUPO:0001077") AnnotationAssertion(oboInOwl:inSubset obo:CL_1001045 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_1001045 "kidney cortex artery cell") EquivalentClasses(obo:CL_1001045 ObjectIntersectionOf(obo:CL_1000891 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005268))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001045 obo:CL_0002584) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001045 obo:CL_1000891) SubClassOf(obo:CL_1001045 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005268)) # Class: obo:CL_1001052 (kidney cortex vein cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001052 "Any kidney venous blood vessel cell that is part of some renal cortex vein.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001052 "KUPO:0001084") AnnotationAssertion(rdfs:label obo:CL_1001052 "kidney cortex vein cell") EquivalentClasses(obo:CL_1001052 ObjectIntersectionOf(obo:CL_1000893 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005269))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001052 obo:CL_0002584) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001052 obo:CL_1000893) SubClassOf(obo:CL_1001052 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005269)) @@ -29679,7 +33348,8 @@ SubClassOf(obo:CL_1001052 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000526 AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001064 "KUPO:0001096") AnnotationAssertion(rdfs:comment obo:CL_1001064 "Note that the source of this term is KUPO:0001096 (artery smooth muscle cell), which we believe actually denotes the kidney specific structure.") AnnotationAssertion(rdfs:label obo:CL_1001064 "kidney artery smooth muscle cell") -SubClassOf(obo:CL_1001064 obo:CL_0000192) +SubClassOf(obo:CL_1001064 obo:CL_0002078) +SubClassOf(obo:CL_1001064 obo:CL_0019018) SubClassOf(obo:CL_1001064 obo:CL_1000891) # Class: obo:CL_1001066 (kidney arteriole smooth muscle cell) @@ -29687,7 +33357,8 @@ SubClassOf(obo:CL_1001064 obo:CL_1000891) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001066 "KUPO:0001098") AnnotationAssertion(rdfs:comment obo:CL_1001066 "Note that the source of this term is KUPO:0001098 (arteriole smooth muscle cell), which we believe actually denotes the kidney specific structure.") AnnotationAssertion(rdfs:label obo:CL_1001066 "kidney arteriole smooth muscle cell") -SubClassOf(obo:CL_1001066 obo:CL_0000192) +SubClassOf(obo:CL_1001066 obo:CL_0002078) +SubClassOf(obo:CL_1001066 obo:CL_0019018) SubClassOf(obo:CL_1001066 obo:CL_1000891) # Class: obo:CL_1001068 (kidney venous system smooth muscle cell) @@ -29695,48 +33366,52 @@ SubClassOf(obo:CL_1001066 obo:CL_1000891) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001068 "KUPO:0001100") AnnotationAssertion(rdfs:comment obo:CL_1001068 "Note that the source of this term is KUPO:0001068 (venous system smooth muscle cell), which we believe actually denotes the kidney specific structure.") AnnotationAssertion(rdfs:label obo:CL_1001068 "kidney venous system smooth muscle cell") -SubClassOf(obo:CL_1001068 obo:CL_0000192) +SubClassOf(obo:CL_1001068 obo:CL_0002078) +SubClassOf(obo:CL_1001068 obo:CL_0019018) SubClassOf(obo:CL_1001068 obo:CL_1000893) # Class: obo:CL_1001096 (kidney afferent arteriole endothelial cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001096 "Any endothelial cell that is part of some renal afferent arteriole.") AnnotationAssertion(obo:RO_0002175 obo:CL_1001096 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001096 "KUPO:0001039") AnnotationAssertion(oboInOwl:inSubset obo:CL_1001096 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_1001096 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1001096 "kidney afferent arteriole endothelial cell") EquivalentClasses(obo:CL_1001096 ObjectIntersectionOf(obo:CL_0000115 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004639))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001096 obo:CL_0000071) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001096 obo:CL_1000412) +SubClassOf(obo:CL_1001096 obo:CL_1000413) SubClassOf(obo:CL_1001096 obo:CL_1001006) # Class: obo:CL_1001097 (kidney afferent arteriole smooth muscle cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001097 "Any smooth muscle cell that is part of some renal afferent arteriole.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001097 "KUPO:0001040") AnnotationAssertion(rdfs:label obo:CL_1001097 "kidney afferent arteriole smooth muscle cell") EquivalentClasses(obo:CL_1001097 ObjectIntersectionOf(obo:CL_0000192 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004639))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001097 obo:CL_0000359) +SubClassOf(obo:CL_1001097 obo:CL_0008035) SubClassOf(obo:CL_1001097 obo:CL_1001006) SubClassOf(obo:CL_1001097 obo:CL_1001066) # Class: obo:CL_1001099 (kidney efferent arteriole endothelial cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001099 "Any endothelial cell that is part of some renal efferent arteriole.") AnnotationAssertion(obo:RO_0002175 obo:CL_1001099 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001099 "KUPO:0001042") AnnotationAssertion(oboInOwl:inSubset obo:CL_1001099 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_1001099 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1001099 "kidney efferent arteriole endothelial cell") EquivalentClasses(obo:CL_1001099 ObjectIntersectionOf(obo:CL_0000115 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004640))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001099 obo:CL_0000071) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001099 obo:CL_1000412) SubClassOf(obo:CL_1001099 obo:CL_1001009) # Class: obo:CL_1001100 (kidney efferent arteriole smooth muscle cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001100 "Any smooth muscle cell that is part of some renal efferent arteriole.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001100 "KUPO:0001043") AnnotationAssertion(rdfs:label obo:CL_1001100 "kidney efferent arteriole smooth muscle cell") EquivalentClasses(obo:CL_1001100 ObjectIntersectionOf(obo:CL_0000192 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004640))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001100 obo:CL_0000359) +SubClassOf(obo:CL_1001100 obo:CL_0008035) SubClassOf(obo:CL_1001100 obo:CL_1001009) SubClassOf(obo:CL_1001100 obo:CL_1001066) @@ -29750,7 +33425,6 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1001106 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1001106 "kidney loop of Henle thick ascending limb epithelial cell") EquivalentClasses(obo:CL_1001106 ObjectIntersectionOf(obo:CL_1001016 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001291))) SubClassOf(obo:CL_1001106 obo:CL_1000504) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001106 obo:CL_1000615) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001106 obo:CL_1001016) SubClassOf(obo:CL_1001106 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001291)) @@ -29763,6 +33437,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1001107 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_1001107 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1001107 "kidney loop of Henle thin ascending limb epithelial cell") EquivalentClasses(obo:CL_1001107 ObjectIntersectionOf(obo:CL_1001016 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004193))) +SubClassOf(obo:CL_1001107 obo:CL_1000617) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001107 obo:CL_1001016) SubClassOf(obo:CL_1001107 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004193)) @@ -29776,7 +33451,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1001108 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1001108 "kidney loop of Henle medullary thick ascending limb epithelial cell") EquivalentClasses(obo:CL_1001108 ObjectIntersectionOf(obo:CL_1001016 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0006376))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001108 obo:CL_1000616) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001108 obo:CL_1001016) +SubClassOf(obo:CL_1001108 obo:CL_1001106) SubClassOf(obo:CL_1001108 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0006376)) # Class: obo:CL_1001109 (kidney loop of Henle cortical thick ascending limb epithelial cell) @@ -29788,8 +33463,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1001109 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_1001109 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1001109 "kidney loop of Henle cortical thick ascending limb epithelial cell") EquivalentClasses(obo:CL_1001109 ObjectIntersectionOf(obo:CL_1001016 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0006854))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001109 obo:CL_1000615) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001109 obo:CL_1001016) +SubClassOf(obo:CL_1001109 obo:CL_1001106) SubClassOf(obo:CL_1001109 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0006854)) # Class: obo:CL_1001111 (kidney loop of Henle thin descending limb epithelial cell) @@ -29801,12 +33475,14 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1001111 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_1001111 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1001111 "kidney loop of Henle thin descending limb epithelial cell") EquivalentClasses(obo:CL_1001111 ObjectIntersectionOf(obo:CL_1001021 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005096))) +SubClassOf(obo:CL_1001111 obo:CL_1000453) SubClassOf(obo:CL_1001111 obo:CL_1000616) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001111 obo:CL_1001021) SubClassOf(obo:CL_1001111 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005096)) # Class: obo:CL_1001123 (kidney outer medulla peritubular capillary cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001123 "Any peritubular capillary endothelial cell that is part of some outer renal medulla peritubular capillary.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001123 "KUPO:0001066") AnnotationAssertion(rdfs:label obo:CL_1001123 "kidney outer medulla peritubular capillary cell") EquivalentClasses(obo:CL_1001123 ObjectIntersectionOf(obo:CL_1001033 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0006341))) @@ -29816,15 +33492,16 @@ SubClassOf(obo:CL_1001123 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000634 # Class: obo:CL_1001124 (kidney cortex peritubular capillary cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001124 "Any peritubular capillary endothelial cell that is part of some renal cortex peritubular capillary.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001124 "KUPO:0001067") AnnotationAssertion(rdfs:label obo:CL_1001124 "kidney cortex peritubular capillary cell") EquivalentClasses(obo:CL_1001124 ObjectIntersectionOf(obo:CL_1001033 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0006851))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001124 obo:CL_0002584) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001124 obo:CL_1001033) SubClassOf(obo:CL_1001124 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0006851)) # Class: obo:CL_1001126 (inner renal medulla vasa recta cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001126 "Any vasa recta cell that is part of some inner renal medulla vasa recta.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001126 "KUPO:0001069") AnnotationAssertion(rdfs:label obo:CL_1001126 "inner renal medulla vasa recta cell") EquivalentClasses(obo:CL_1001126 ObjectIntersectionOf(obo:CL_1001036 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004776))) @@ -29834,6 +33511,7 @@ SubClassOf(obo:CL_1001126 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000477 # Class: obo:CL_1001127 (outer renal medulla vasa recta cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001127 "Any vasa recta cell that is part of some outer renal medulla vasa recta.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001127 "KUPO:0001070") AnnotationAssertion(rdfs:label obo:CL_1001127 "outer renal medulla vasa recta cell") EquivalentClasses(obo:CL_1001127 ObjectIntersectionOf(obo:CL_1001036 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004775))) @@ -29856,6 +33534,7 @@ SubClassOf(obo:CL_1001131 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000909 # Class: obo:CL_1001135 (arcuate artery cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001135 "Any kidney cortex artery cell that is part of some kidney arcuate artery.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001135 "KUPO:0001078") AnnotationAssertion(rdfs:label obo:CL_1001135 "arcuate artery cell") EquivalentClasses(obo:CL_1001135 ObjectIntersectionOf(obo:CL_1001045 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001552))) @@ -29864,6 +33543,7 @@ SubClassOf(obo:CL_1001135 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000155 # Class: obo:CL_1001138 (interlobular artery cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001138 "Any kidney cortex artery cell that is part of some interlobular artery.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001138 "KUPO:0001081") AnnotationAssertion(rdfs:label obo:CL_1001138 "interlobular artery cell") EquivalentClasses(obo:CL_1001138 ObjectIntersectionOf(obo:CL_1001045 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004723))) @@ -29872,6 +33552,7 @@ SubClassOf(obo:CL_1001138 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000472 # Class: obo:CL_1001142 (arcuate vein cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001142 "Any kidney cortex vein cell that is part of some kidney arcuate vein.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001142 "KUPO:0001085") AnnotationAssertion(rdfs:label obo:CL_1001142 "arcuate vein cell") EquivalentClasses(obo:CL_1001142 ObjectIntersectionOf(obo:CL_1001052 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004719))) @@ -29880,6 +33561,7 @@ SubClassOf(obo:CL_1001142 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000471 # Class: obo:CL_1001145 (interlobular vein cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001145 "Any kidney cortex vein cell that is part of some renal interlobular vein.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001145 "KUPO:0001088") AnnotationAssertion(rdfs:label obo:CL_1001145 "interlobular vein cell") EquivalentClasses(obo:CL_1001145 ObjectIntersectionOf(obo:CL_1001052 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005168))) @@ -29888,6 +33570,7 @@ SubClassOf(obo:CL_1001145 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000516 # Class: obo:CL_1001209 (inner medulla vasa recta ascending limb cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001209 "Any vasa recta ascending limb cell that is part of some inner medulla vasa recta ascending limb.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001209 "KUPO:0001075") AnnotationAssertion(rdfs:label obo:CL_1001209 "inner medulla vasa recta ascending limb cell") EquivalentClasses(obo:CL_1001209 ObjectIntersectionOf(obo:CL_1001131 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0009092))) @@ -29897,6 +33580,7 @@ SubClassOf(obo:CL_1001209 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000909 # Class: obo:CL_1001210 (outer medulla vasa recta ascending limb cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001210 "Any vasa recta ascending limb cell that is part of some outer medulla vasa recta ascending limb.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001210 "KUPO:0001076") AnnotationAssertion(rdfs:label obo:CL_1001210 "outer medulla vasa recta ascending limb cell") EquivalentClasses(obo:CL_1001210 ObjectIntersectionOf(obo:CL_1001131 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0009093))) @@ -29906,73 +33590,73 @@ SubClassOf(obo:CL_1001210 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000909 # Class: obo:CL_1001213 (arcuate artery endothelial cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001213 "Any endothelial cell that is part of some kidney arcuate artery.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001213 "KUPO:0001079") AnnotationAssertion(rdfs:label obo:CL_1001213 "arcuate artery endothelial cell") EquivalentClasses(obo:CL_1001213 ObjectIntersectionOf(obo:CL_0000115 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001552))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001213 obo:CL_0000071) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001213 obo:CL_1000413) SubClassOf(obo:CL_1001213 obo:CL_1001135) # Class: obo:CL_1001214 (arcuate artery smooth muscle cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001214 "Any smooth muscle cell that is part of some kidney arcuate artery.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001214 "KUPO:0001080") AnnotationAssertion(rdfs:label obo:CL_1001214 "arcuate artery smooth muscle cell") EquivalentClasses(obo:CL_1001214 ObjectIntersectionOf(obo:CL_0000192 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001552))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001214 obo:CL_0000359) SubClassOf(obo:CL_1001214 obo:CL_1001064) SubClassOf(obo:CL_1001214 obo:CL_1001135) # Class: obo:CL_1001216 (interlobulary artery endothelial cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001216 "Any endothelial cell that is part of some interlobular artery.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001216 "KUPO:0001082") AnnotationAssertion(rdfs:label obo:CL_1001216 "interlobulary artery endothelial cell") EquivalentClasses(obo:CL_1001216 ObjectIntersectionOf(obo:CL_0000115 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004723))) -SubClassOf(obo:CL_1001216 obo:CL_0000071) SubClassOf(obo:CL_1001216 obo:CL_1000413) SubClassOf(obo:CL_1001216 obo:CL_1001138) # Class: obo:CL_1001217 (interlobulary artery smooth muscle cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001217 "Any smooth muscle cell that is part of some interlobular artery.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001217 "KUPO:0001083") AnnotationAssertion(rdfs:label obo:CL_1001217 "interlobulary artery smooth muscle cell") EquivalentClasses(obo:CL_1001217 ObjectIntersectionOf(obo:CL_0000192 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004723))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001217 obo:CL_0000359) SubClassOf(obo:CL_1001217 obo:CL_1001064) SubClassOf(obo:CL_1001217 obo:CL_1001138) # Class: obo:CL_1001220 (arcuate vein endothelial cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001220 "Any endothelial cell that is part of some kidney arcuate vein.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001220 "KUPO:0001086") AnnotationAssertion(rdfs:label obo:CL_1001220 "arcuate vein endothelial cell") EquivalentClasses(obo:CL_1001220 ObjectIntersectionOf(obo:CL_0000115 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004719))) -SubClassOf(obo:CL_1001220 obo:CL_0000071) SubClassOf(obo:CL_1001220 obo:CL_0002543) SubClassOf(obo:CL_1001220 obo:CL_1001142) # Class: obo:CL_1001221 (arcuate vein smooth muscle cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001221 "Any smooth muscle cell that is part of some kidney arcuate vein.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001221 "KUPO:0001087") AnnotationAssertion(rdfs:label obo:CL_1001221 "arcuate vein smooth muscle cell") EquivalentClasses(obo:CL_1001221 ObjectIntersectionOf(obo:CL_0000192 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004719))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001221 obo:CL_0000359) SubClassOf(obo:CL_1001221 obo:CL_1001068) SubClassOf(obo:CL_1001221 obo:CL_1001142) # Class: obo:CL_1001223 (interlobulary vein endothelial cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001223 "Any endothelial cell that is part of some renal interlobular vein.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001223 "KUPO:0001089") AnnotationAssertion(rdfs:label obo:CL_1001223 "interlobulary vein endothelial cell") EquivalentClasses(obo:CL_1001223 ObjectIntersectionOf(obo:CL_0000115 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005168))) -SubClassOf(obo:CL_1001223 obo:CL_0000071) SubClassOf(obo:CL_1001223 obo:CL_0002543) SubClassOf(obo:CL_1001223 obo:CL_1001145) # Class: obo:CL_1001224 (interlobulary vein smooth muscle cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001224 "Any smooth muscle cell that is part of some renal interlobular vein.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001224 "KUPO:0001090") AnnotationAssertion(rdfs:label obo:CL_1001224 "interlobulary vein smooth muscle cell") EquivalentClasses(obo:CL_1001224 ObjectIntersectionOf(obo:CL_0000192 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005168))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001224 obo:CL_0000359) SubClassOf(obo:CL_1001224 obo:CL_1001068) SubClassOf(obo:CL_1001224 obo:CL_1001145) @@ -29984,6 +33668,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001225 "Wikipedia:Kidney_collecti AnnotationAssertion(oboInOwl:inSubset obo:CL_1001225 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_1001225 "kidney collecting duct cell") EquivalentClasses(obo:CL_1001225 ObjectIntersectionOf(obo:CL_1000497 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001232))) +SubClassOf(obo:CL_1001225 obo:CL_1000497) +SubClassOf(obo:CL_1001225 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001232)) # Class: obo:CL_1001285 (vasa recta descending limb cell) @@ -30000,6 +33686,7 @@ SubClassOf(obo:CL_1001285 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000920 # Class: obo:CL_1001286 (inner medulla vasa recta descending limb cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001286 "Any vasa recta descending limb cell that is part of some inner medulla vasa recta descending limb.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001286 "KUPO:0001072") AnnotationAssertion(rdfs:label obo:CL_1001286 "inner medulla vasa recta descending limb cell") EquivalentClasses(obo:CL_1001286 ObjectIntersectionOf(obo:CL_1001285 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0009089))) @@ -30009,6 +33696,7 @@ SubClassOf(obo:CL_1001286 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000908 # Class: obo:CL_1001287 (outer medulla vasa recta descending limb cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001287 "Any vasa recta descending limb cell that is part of some outer medulla vasa recta descending limb.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001287 "KUPO:0001073") AnnotationAssertion(rdfs:label obo:CL_1001287 "outer medulla vasa recta descending limb cell") EquivalentClasses(obo:CL_1001287 ObjectIntersectionOf(obo:CL_1001285 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0009090))) @@ -30026,22 +33714,27 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1001318 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1001318 "renal interstitial pericyte") EquivalentClasses(obo:CL_1001318 ObjectIntersectionOf(obo:CL_0000669 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005215))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001318 obo:CL_0000669) +SubClassOf(obo:CL_1001318 obo:CL_1000500) # Class: obo:CL_1001319 (bladder cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001319 "Any cell that is part of some urinary bladder.") AnnotationAssertion(obo:RO_0002175 obo:CL_1001319 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001319 "KUPO:0001120") AnnotationAssertion(oboInOwl:inSubset obo:CL_1001319 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_1001319 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1001319 "bladder cell") EquivalentClasses(obo:CL_1001319 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001255))) +SubClassOf(obo:CL_1001319 obo:CL_1000600) SubClassOf(obo:CL_1001319 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001255)) # Class: obo:CL_1001320 (urethra cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001320 "Any cell that is part of some urethra.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001320 "KUPO:0001123") AnnotationAssertion(rdfs:label obo:CL_1001320 "urethra cell") EquivalentClasses(obo:CL_1001320 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000057))) +SubClassOf(obo:CL_1001320 obo:CL_1000600) SubClassOf(obo:CL_1001320 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000057)) # Class: obo:CL_1001428 (bladder urothelial cell) @@ -30056,19 +33749,24 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1001428 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_1001428 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1001428 "bladder urothelial cell") EquivalentClasses(obo:CL_1001428 ObjectIntersectionOf(obo:CL_0000731 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004645))) +SubClassOf(obo:CL_1001428 obo:CL_0000731) +SubClassOf(obo:CL_1001428 obo:CL_1001319) +SubClassOf(obo:CL_1001428 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004645)) # Class: obo:CL_1001430 (urethra urothelial cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001430 "Any urothelial cell that is part of some urethra urothelium.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001430 "KUPO:0001124") AnnotationAssertion(oboInOwl:inSubset obo:CL_1001430 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_1001430 "urethra urothelial cell") EquivalentClasses(obo:CL_1001430 ObjectIntersectionOf(obo:CL_0000731 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004787))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001430 obo:CL_0000731) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001430 obo:CL_1001320) +SubClassOf(obo:CL_1001430 obo:CL_1000296) SubClassOf(obo:CL_1001430 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004787)) # Class: obo:CL_1001431 (kidney collecting duct principal cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001431 "Any renal principal cell that is part of some collecting duct of renal tubule.") AnnotationAssertion(obo:RO_0002175 obo:CL_1001431 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001431 "KUPO:0001128") AnnotationAssertion(oboInOwl:inSubset obo:CL_1001431 cl:cellxgene_subset) @@ -30077,10 +33775,10 @@ AnnotationAssertion(rdfs:label obo:CL_1001431 "kidney collecting duct principal EquivalentClasses(obo:CL_1001431 ObjectIntersectionOf(obo:CL_0005009 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001232))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001431 obo:CL_0005009) SubClassOf(obo:CL_1001431 obo:CL_1000454) -SubClassOf(obo:CL_1001431 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001232)) # Class: obo:CL_1001432 (kidney collecting duct intercalated cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001432 "Any renal intercalated cell that is part of some collecting duct of renal tubule.") AnnotationAssertion(obo:RO_0002175 obo:CL_1001432 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001432 "KUPO:0001129") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001432 "http://en.wikipedia.org/wiki/Collecting_duct_system#Intercalated_cells") @@ -30090,7 +33788,6 @@ AnnotationAssertion(rdfs:label obo:CL_1001432 "kidney collecting duct intercalat EquivalentClasses(obo:CL_1001432 ObjectIntersectionOf(obo:CL_0005010 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001232))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001432 obo:CL_0005010) SubClassOf(obo:CL_1001432 obo:CL_1000454) -SubClassOf(obo:CL_1001432 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001232)) # Class: obo:CL_1001433 (epithelial cell of exocrine pancreas) @@ -30102,14 +33799,19 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1001433 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_1001433 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1001433 "epithelial cell of exocrine pancreas") EquivalentClasses(obo:CL_1001433 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000017))) +SubClassOf(obo:CL_1001433 obo:CL_0000083) +SubClassOf(obo:CL_1001433 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000017)) # Class: obo:CL_1001434 (olfactory bulb interneuron) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:18603310") obo:IAO_0000115 obo:CL_1001434 "A neuron residing in the olfactory bulb that serve to process and refine signals arising from olfactory sensory neurons") AnnotationAssertion(rdfs:label obo:CL_1001434 "olfactory bulb interneuron") EquivalentClasses(obo:CL_1001434 ObjectIntersectionOf(obo:CL_0000099 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002264))) +SubClassOf(obo:CL_1001434 obo:BFO_0000002) SubClassOf(obo:CL_1001434 obo:CL_0000101) +SubClassOf(obo:CL_1001434 obo:CL_0000402) SubClassOf(obo:CL_1001434 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002264)) +SubClassOf(obo:CL_1001434 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002264)) # Class: obo:CL_1001435 (periglomerular cell) @@ -30143,8 +33845,10 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MP:0004297") obo:IAO_0000115 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MP:0004297") oboInOwl:hasExactSynonym obo:CL_1001451 "proprioceptive neuron") AnnotationAssertion(rdfs:label obo:CL_1001451 "sensory neuron of dorsal root ganglion") EquivalentClasses(obo:CL_1001451 ObjectIntersectionOf(obo:CL_0000101 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000044))) +SubClassOf(obo:CL_1001451 obo:CL_0000006) SubClassOf(obo:CL_1001451 obo:CL_4023168) SubClassOf(obo:CL_1001451 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000044)) +SubClassOf(obo:CL_1001451 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000044)) # Class: obo:CL_1001474 (medium spiny neuron) @@ -30158,9 +33862,9 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "BTO:0004778") oboInOwl:hasRel AnnotationAssertion(oboInOwl:inSubset obo:CL_1001474 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_1001474 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1001474 "medium spiny neuron") -SubClassOf(obo:CL_1001474 obo:CL_0000540) +SubClassOf(obo:CL_1001474 obo:CL_0000617) +SubClassOf(obo:CL_1001474 obo:CL_2000029) SubClassOf(obo:CL_1001474 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000369)) -SubClassOf(obo:CL_1001474 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061534)) # Class: obo:CL_1001502 (mitral cell) @@ -30173,6 +33877,7 @@ SubClassOf(obo:CL_1001502 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0004186 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MP:0009955") obo:IAO_0000115 obo:CL_1001503 "The principal glutaminergic neuron located in the outer third of the external plexiform layer of the olfactory bulb; a single short primary dendrite traverses the outer external plexiform layer and terminates within an olfactory glomerulus in a tuft of branches, where it receives the input from olfactory receptor neuron axon terminals; axons of the tufted cells transfer information to a number of areas in the brain, including the piriform cortex, entorhinal cortex, olfactory tubercle, and amygdala.") AnnotationAssertion(rdfs:label obo:CL_1001503 "olfactory bulb tufted cell") +SubClassOf(obo:CL_1001503 obo:BFO_0000002) SubClassOf(obo:CL_1001503 obo:CL_0000540) SubClassOf(obo:CL_1001503 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005376)) @@ -30182,17 +33887,22 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MP:0010125") obo:IAO_0000115 AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_1001505 "parvocellular neuron") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_1001505 "parvocellular neurosecretory neuron") AnnotationAssertion(rdfs:label obo:CL_1001505 "parvocellular neurosecretory cell") -SubClassOf(obo:CL_1001505 obo:CL_0000540) +SubClassOf(obo:CL_1001505 obo:CL_0000165) +SubClassOf(obo:CL_1001505 obo:CL_0000167) +SubClassOf(obo:CL_1001505 obo:CL_2000030) SubClassOf(obo:CL_1001505 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001930)) SubClassOf(obo:CL_1001505 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030103)) # Class: obo:CL_1001509 (glycinergic neuron) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MP:0010385") obo:IAO_0000115 obo:CL_1001509 "The neurons that utilize glycine as a neurotransmitter.") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001509 "FBbt:00048032") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_1001509 "FBbt:00048032") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_1001509 "ZFA:0009396") AnnotationAssertion(rdfs:label obo:CL_1001509 "glycinergic neuron") EquivalentClasses(obo:CL_1001509 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061537))) +SubClassOf(obo:CL_1001509 obo:CL_0000151) SubClassOf(obo:CL_1001509 obo:CL_0000540) +SubClassOf(obo:CL_1001509 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061537)) # Class: obo:CL_1001516 (intestinal enteroendocrine cell) @@ -30200,18 +33910,26 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MP:0010802") obo:IAO_0000115 AnnotationAssertion(oboInOwl:inSubset obo:CL_1001516 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_1001516 "intestinal enteroendocrine cell") EquivalentClasses(obo:CL_1001516 ObjectIntersectionOf(obo:CL_0000164 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001242))) +SubClassOf(obo:CL_1001516 obo:CL_0000164) +SubClassOf(obo:CL_1001516 obo:CL_0002563) # Class: obo:CL_1001517 (stomach enteroendocrine cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MP:0010803") obo:IAO_0000115 obo:CL_1001517 "The various hormone- or neurotransmitter-secreting cells present throughout the mucosa of the stomach.") AnnotationAssertion(rdfs:label obo:CL_1001517 "stomach enteroendocrine cell") EquivalentClasses(obo:CL_1001517 ObjectIntersectionOf(obo:CL_0000164 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001160))) +SubClassOf(obo:CL_1001517 obo:CL_0000164) +SubClassOf(obo:CL_1001517 obo:CL_0002659) +SubClassOf(obo:CL_1001517 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001160)) # Class: obo:CL_1001561 (vomeronasal sensory neuron) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MP:0011679") obo:IAO_0000115 obo:CL_1001561 "Chemosensitive cells that innervate the vomernasal organ epithelium and are responsible for receiving and transmitting pheromone signals.") AnnotationAssertion(rdfs:label obo:CL_1001561 "vomeronasal sensory neuron") EquivalentClasses(obo:CL_1001561 ObjectIntersectionOf(obo:CL_0000101 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002255) ObjectSomeValuesFrom(obo:RO_0013007 obo:UBERON_0003367))) +SubClassOf(obo:CL_1001561 obo:CL_0000101) +SubClassOf(obo:CL_1001561 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002255)) +SubClassOf(obo:CL_1001561 ObjectSomeValuesFrom(obo:RO_0013007 obo:UBERON_0003367)) # Class: obo:CL_1001566 (obsolete bronchioalveolar stem cells) @@ -30224,14 +33942,18 @@ AnnotationAssertion(owl:deprecated obo:CL_1001566 "true"^^xsd:boolean) # Class: obo:CL_1001567 (lung endothelial cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001567 "Any endothelial cell of vascular tree that is part of some lung.") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_1001567 "endothelial cell of lung") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_1001567 "pulmonary vessel endothelial cell") AnnotationAssertion(rdfs:label obo:CL_1001567 "lung endothelial cell") EquivalentClasses(obo:CL_1001567 ObjectIntersectionOf(obo:CL_0002139 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002048))) +SubClassOf(obo:CL_1001567 obo:CL_0000082) +SubClassOf(obo:CL_1001567 obo:CL_0002139) SubClassOf(obo:CL_1001567 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000102)) # Class: obo:CL_1001568 (pulmonary artery endothelial cell) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_1001568 "Any endothelial cell of vascular tree that is part of some pulmonary artery.") AnnotationAssertion(obo:RO_0002175 obo:CL_1001568 obo:NCBITaxon_9606) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001568 "BTO:0001141") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "BTO:0001141") oboInOwl:hasRelatedSynonym obo:CL_1001568 "PAEC cell") @@ -30239,6 +33961,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_1001568 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_1001568 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1001568 "pulmonary artery endothelial cell") EquivalentClasses(obo:CL_1001568 ObjectIntersectionOf(obo:CL_0002139 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002012))) +SubClassOf(obo:CL_1001568 obo:CL_1000413) SubClassOf(obo:CL_1001568 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005317)) # Class: obo:CL_1001569 (hippocampal interneuron) @@ -30247,6 +33970,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:pr") obo:IAO_0000115 obo: AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001569 "FMA:84777") AnnotationAssertion(rdfs:label obo:CL_1001569 "hippocampal interneuron") EquivalentClasses(obo:CL_1001569 ObjectIntersectionOf(obo:CL_0000099 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002421))) +SubClassOf(obo:CL_1001569 obo:CL_0002608) +SubClassOf(obo:CL_1001569 obo:CL_0008031) # Class: obo:CL_1001571 (hippocampal pyramidal neuron) @@ -30257,6 +33982,9 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "NIFSTD:sao131261273") oboInOw AnnotationAssertion(Annotation(oboInOwl:hasDbXref "NIFSTD:sao131261273") oboInOwl:hasNarrowSynonym obo:CL_1001571 "hippocampus (CA) pyramidal neuron") AnnotationAssertion(rdfs:label obo:CL_1001571 "hippocampal pyramidal neuron") EquivalentClasses(obo:CL_1001571 ObjectIntersectionOf(obo:CL_0000598 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002421))) +SubClassOf(obo:CL_1001571 obo:BFO_0000002) +SubClassOf(obo:CL_1001571 obo:CL_0002608) +SubClassOf(obo:CL_1001571 obo:CL_4023111) SubClassOf(obo:CL_1001571 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002313)) # Class: obo:CL_1001572 (colon endothelial cell) @@ -30267,6 +33995,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-2397") Annotation(o AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-2397") oboInOwl:hasRelatedSynonym obo:CL_1001572 "colonic endothelial cell") AnnotationAssertion(rdfs:label obo:CL_1001572 "colon endothelial cell") EquivalentClasses(obo:CL_1001572 ObjectIntersectionOf(obo:CL_0000115 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001155))) +SubClassOf(obo:CL_1001572 obo:CL_0000115) +SubClassOf(obo:CL_1001572 obo:CL_0011108) SubClassOf(obo:CL_1001572 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0013695)) # Class: obo:CL_1001573 (nasopharyngeal epithelial cell) @@ -30276,7 +34006,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001573 "CALOHA:TS-2398") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-2398") oboInOwl:hasRelatedSynonym obo:CL_1001573 "nasopharynx respiratory epithelial cells") AnnotationAssertion(rdfs:label obo:CL_1001573 "nasopharyngeal epithelial cell") EquivalentClasses(obo:CL_1001573 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001728))) -SubClassOf(obo:CL_1001573 obo:CL_0000066) +SubClassOf(obo:CL_1001573 obo:CL_0002251) +SubClassOf(obo:CL_1001573 obo:CL_0002631) SubClassOf(obo:CL_1001573 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001951)) # Class: obo:CL_1001575 (uterine cervix squamous cell) @@ -30290,7 +34021,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1251") oboInOwl:has AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1251") oboInOwl:hasRelatedSynonym obo:CL_1001575 "uterine cervix squamous epithelial cells") AnnotationAssertion(rdfs:label obo:CL_1001575 "uterine cervix squamous cell") EquivalentClasses(obo:CL_1001575 ObjectIntersectionOf(obo:CL_0000076 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000002))) -SubClassOf(obo:CL_1001575 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004801)) +SubClassOf(obo:CL_1001575 obo:CL_0000076) +SubClassOf(obo:CL_1001575 obo:CL_0002535) # Class: obo:CL_1001576 (oral mucosa squamous cell) @@ -30302,6 +34034,9 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1252") oboInOwl:has AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1252") oboInOwl:hasRelatedSynonym obo:CL_1001576 "oral mucosa squamous epithelial cells") AnnotationAssertion(rdfs:label obo:CL_1001576 "oral mucosa squamous cell") EquivalentClasses(obo:CL_1001576 ObjectIntersectionOf(obo:CL_0000076 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002424))) +SubClassOf(obo:CL_1001576 obo:CL_0000076) +SubClassOf(obo:CL_1001576 obo:CL_0002251) +SubClassOf(obo:CL_1001576 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002424)) # Class: obo:CL_1001577 (tonsil squamous cell) @@ -30315,6 +34050,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1253") oboInOwl:has AnnotationAssertion(oboInOwl:inSubset obo:CL_1001577 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1001577 "tonsil squamous cell") EquivalentClasses(obo:CL_1001577 ObjectIntersectionOf(obo:CL_0000076 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002372))) +SubClassOf(obo:CL_1001577 obo:CL_0000076) +SubClassOf(obo:CL_1001577 obo:CL_0002251) SubClassOf(obo:CL_1001577 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0013696)) # Class: obo:CL_1001578 (vagina squamous cell) @@ -30327,6 +34064,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1254") oboInOwl:has AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1254") oboInOwl:hasRelatedSynonym obo:CL_1001578 "vaginal squamous epithelial cell") AnnotationAssertion(rdfs:label obo:CL_1001578 "vagina squamous cell") EquivalentClasses(obo:CL_1001578 ObjectIntersectionOf(obo:CL_0000076 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000996))) +SubClassOf(obo:CL_1001578 obo:CL_0000076) SubClassOf(obo:CL_1001578 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001344)) # Class: obo:CL_1001579 (cerebral cortex glial cell) @@ -30338,6 +34076,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1256") oboInOwl:has AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1256") oboInOwl:hasRelatedSynonym obo:CL_1001579 "cerebrum cortex glial cell") AnnotationAssertion(rdfs:label obo:CL_1001579 "cerebral cortex glial cell") EquivalentClasses(obo:CL_1001579 ObjectIntersectionOf(obo:CL_0000125 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000956))) +SubClassOf(obo:CL_1001579 obo:CL_0000125) +SubClassOf(obo:CL_1001579 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000956)) # Class: obo:CL_1001580 (hippocampal glial cell) @@ -30347,6 +34087,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1257") oboInOwl:has AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1257") oboInOwl:hasExactSynonym obo:CL_1001580 "hippocampus neuroglial cell") AnnotationAssertion(rdfs:label obo:CL_1001580 "hippocampal glial cell") EquivalentClasses(obo:CL_1001580 ObjectIntersectionOf(obo:CL_0000125 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002421))) +SubClassOf(obo:CL_1001580 obo:CL_1001579) +SubClassOf(obo:CL_1001580 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002421)) # Class: obo:CL_1001581 (lateral ventricle glial cell) @@ -30355,6 +34097,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001581 "CALOHA:TS-1258") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1258") oboInOwl:hasRelatedSynonym obo:CL_1001581 "lateral ventricle glial cells") AnnotationAssertion(rdfs:label obo:CL_1001581 "lateral ventricle glial cell") EquivalentClasses(obo:CL_1001581 ObjectIntersectionOf(obo:CL_0000125 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002285))) +SubClassOf(obo:CL_1001581 obo:CL_0000125) +SubClassOf(obo:CL_1001581 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002285)) # Class: obo:CL_1001582 (lateral ventricle neuron) @@ -30365,6 +34109,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1261") oboInOwl:has AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1261") oboInOwl:hasRelatedSynonym obo:CL_1001582 "lateral ventricle neuronal cells") AnnotationAssertion(rdfs:label obo:CL_1001582 "lateral ventricle neuron") EquivalentClasses(obo:CL_1001582 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002285))) +SubClassOf(obo:CL_1001582 obo:CL_2000029) +SubClassOf(obo:CL_1001582 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002285)) # Class: obo:CL_1001583 (obsolete breast adipocyte) @@ -30384,6 +34130,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1271") oboInOwl:has AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1271") oboInOwl:hasRelatedSynonym obo:CL_1001585 "vermiform appendix glandular cell") AnnotationAssertion(rdfs:label obo:CL_1001585 "appendix glandular cell") EquivalentClasses(obo:CL_1001585 ObjectIntersectionOf(obo:CL_0000150 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001154))) +SubClassOf(obo:CL_1001585 obo:CL_0002658) +SubClassOf(obo:CL_1001585 obo:CL_1000405) SubClassOf(obo:CL_1001585 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0009697)) # Class: obo:CL_1001586 (mammary gland glandular cell) @@ -30395,6 +34143,9 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1272") oboInOwl:has AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1272") oboInOwl:hasRelatedSynonym obo:CL_1001586 "mammary glandular cell") AnnotationAssertion(rdfs:label obo:CL_1001586 "mammary gland glandular cell") EquivalentClasses(obo:CL_1001586 ObjectIntersectionOf(obo:CL_0000150 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001911))) +SubClassOf(obo:CL_1001586 obo:CL_0000150) +SubClassOf(obo:CL_1001586 obo:CL_0000152) +SubClassOf(obo:CL_1001586 obo:CL_0002327) SubClassOf(obo:CL_1001586 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003244)) # Class: obo:CL_1001587 (uterine cervix glandular cell) @@ -30406,7 +34157,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1273") oboInOwl:has AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1273") oboInOwl:hasRelatedSynonym obo:CL_1001587 "cervix, uterine glandular cells") AnnotationAssertion(rdfs:label obo:CL_1001587 "uterine cervix glandular cell") EquivalentClasses(obo:CL_1001587 ObjectIntersectionOf(obo:CL_0000150 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000002))) -SubClassOf(obo:CL_1001587 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004801)) +SubClassOf(obo:CL_1001587 obo:CL_0002535) +SubClassOf(obo:CL_1001587 obo:CL_1001591) # Class: obo:CL_1001588 (colon glandular cell) @@ -30415,7 +34167,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001588 "CALOHA:TS-1274") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1274") oboInOwl:hasRelatedSynonym obo:CL_1001588 "colon glandular cells") AnnotationAssertion(rdfs:label obo:CL_1001588 "colon glandular cell") EquivalentClasses(obo:CL_1001588 ObjectIntersectionOf(obo:CL_0000150 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001155))) -SubClassOf(obo:CL_1001588 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000397)) +SubClassOf(obo:CL_1001588 obo:CL_0002658) +SubClassOf(obo:CL_1001588 obo:CL_0011108) # Class: obo:CL_1001589 (duodenum glandular cell) @@ -30425,6 +34178,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1275") oboInOwl:has AnnotationAssertion(oboInOwl:inSubset obo:CL_1001589 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_1001589 "duodenum glandular cell") EquivalentClasses(obo:CL_1001589 ObjectIntersectionOf(obo:CL_0000150 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002114))) +SubClassOf(obo:CL_1001589 obo:CL_1001598) SubClassOf(obo:CL_1001589 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0008346)) # Class: obo:CL_1001590 (epididymis glandular cell) @@ -30435,6 +34189,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1276") oboInOwl:has AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1276") oboInOwl:hasRelatedSynonym obo:CL_1001590 "epididymis glandular cells") AnnotationAssertion(rdfs:label obo:CL_1001590 "epididymis glandular cell") EquivalentClasses(obo:CL_1001590 ObjectIntersectionOf(obo:CL_0000150 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001301))) +SubClassOf(obo:CL_1001590 obo:CL_0000068) +SubClassOf(obo:CL_1001590 obo:CL_0000150) SubClassOf(obo:CL_1001590 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004544)) # Class: obo:CL_1001591 (oviduct glandular cell) @@ -30446,6 +34202,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1277") oboInOwl:has AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1277") oboInOwl:hasRelatedSynonym obo:CL_1001591 "uterine tube glandular cell") AnnotationAssertion(rdfs:label obo:CL_1001591 "oviduct glandular cell") EquivalentClasses(obo:CL_1001591 ObjectIntersectionOf(obo:CL_0000150 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000993))) +SubClassOf(obo:CL_1001591 obo:CL_0000150) SubClassOf(obo:CL_1001591 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004804)) # Class: obo:CL_1001592 (gallbladder glandular cell) @@ -30457,6 +34214,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1278") oboInOwl:has AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1278") oboInOwl:hasRelatedSynonym obo:CL_1001592 "gallbladder glandular cells") AnnotationAssertion(rdfs:label obo:CL_1001592 "gallbladder glandular cell") EquivalentClasses(obo:CL_1001592 ObjectIntersectionOf(obo:CL_0000150 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002110))) +SubClassOf(obo:CL_1001592 obo:CL_0000150) +SubClassOf(obo:CL_1001592 obo:CL_1000415) SubClassOf(obo:CL_1001592 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002029)) # Class: obo:CL_1001593 (parathyroid glandular cell) @@ -30467,6 +34226,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1279") oboInOwl:has AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1279") oboInOwl:hasRelatedSynonym obo:CL_1001593 "parathyroid gland glandular cells") AnnotationAssertion(rdfs:label obo:CL_1001593 "parathyroid glandular cell") EquivalentClasses(obo:CL_1001593 ObjectIntersectionOf(obo:CL_0000150 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001132))) +SubClassOf(obo:CL_1001593 obo:CL_0000150) SubClassOf(obo:CL_1001593 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0011197)) # Class: obo:CL_1001595 (rectum glandular cell) @@ -30477,6 +34237,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1281") oboInOwl:has AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1281") oboInOwl:hasRelatedSynonym obo:CL_1001595 "rectum glandular cells") AnnotationAssertion(rdfs:label obo:CL_1001595 "rectum glandular cell") EquivalentClasses(obo:CL_1001595 ObjectIntersectionOf(obo:CL_0000150 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001052))) +SubClassOf(obo:CL_1001595 obo:CL_0002658) SubClassOf(obo:CL_1001595 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003354)) # Class: obo:CL_1001596 (salivary gland glandular cell) @@ -30486,6 +34247,9 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001596 "CALOHA:TS-1282") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1282") oboInOwl:hasRelatedSynonym obo:CL_1001596 "salivary gland glandular cells") AnnotationAssertion(rdfs:label obo:CL_1001596 "salivary gland glandular cell") EquivalentClasses(obo:CL_1001596 ObjectIntersectionOf(obo:CL_0000150 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001044))) +SubClassOf(obo:CL_1001596 obo:CL_0000150) +SubClassOf(obo:CL_1001596 obo:CL_0000152) +SubClassOf(obo:CL_1001596 obo:CL_0002251) SubClassOf(obo:CL_1001596 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004809)) # Class: obo:CL_1001597 (seminal vesicle glandular cell) @@ -30496,6 +34260,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1283") oboInOwl:has AnnotationAssertion(oboInOwl:inSubset obo:CL_1001597 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_1001597 "seminal vesicle glandular cell") EquivalentClasses(obo:CL_1001597 ObjectIntersectionOf(obo:CL_0000150 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000998))) +SubClassOf(obo:CL_1001597 obo:CL_0000068) +SubClassOf(obo:CL_1001597 obo:CL_0000150) SubClassOf(obo:CL_1001597 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004805)) # Class: obo:CL_1001598 (small intestine glandular cell) @@ -30508,6 +34274,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1286") oboInOwl:has AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1286") oboInOwl:hasRelatedSynonym obo:CL_1001598 "small intestine glandular cells") AnnotationAssertion(rdfs:label obo:CL_1001598 "small intestine glandular cell") EquivalentClasses(obo:CL_1001598 ObjectIntersectionOf(obo:CL_0000150 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002108))) +SubClassOf(obo:CL_1001598 obo:CL_0000150) +SubClassOf(obo:CL_1001598 obo:CL_0002254) SubClassOf(obo:CL_1001598 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001902)) # Class: obo:CL_1001599 (pancreas exocrine glandular cell) @@ -30521,6 +34289,9 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1242") oboInOwl:has AnnotationAssertion(oboInOwl:inSubset obo:CL_1001599 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1001599 "pancreas exocrine glandular cell") EquivalentClasses(obo:CL_1001599 ObjectIntersectionOf(obo:CL_0000150 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000017))) +SubClassOf(obo:CL_1001599 obo:CL_0000150) +SubClassOf(obo:CL_1001599 obo:CL_0000152) +SubClassOf(obo:CL_1001599 obo:CL_1001433) SubClassOf(obo:CL_1001599 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0013697)) # Class: obo:CL_1001601 (adrenal gland glandular cell) @@ -30532,6 +34303,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-2177") oboInOwl:has AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-2177") oboInOwl:hasRelatedSynonym obo:CL_1001601 "suprarenal gland glandular cell") AnnotationAssertion(rdfs:label obo:CL_1001601 "adrenal gland glandular cell") EquivalentClasses(obo:CL_1001601 ObjectIntersectionOf(obo:CL_0000150 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001235))) +SubClassOf(obo:CL_1001601 obo:CL_0000150) +SubClassOf(obo:CL_1001601 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001235)) # Class: obo:CL_1001602 (cerebral cortex endothelial cell) @@ -30542,6 +34315,9 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-2372") oboInOwl:has AnnotationAssertion(oboInOwl:inSubset obo:CL_1001602 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_1001602 "cerebral cortex endothelial cell") EquivalentClasses(obo:CL_1001602 ObjectIntersectionOf(obo:CL_0000115 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000956))) +SubClassOf(obo:CL_1001602 obo:CL_0000115) +SubClassOf(obo:CL_1001602 obo:CL_0002319) +SubClassOf(obo:CL_1001602 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000956)) SubClassOf(obo:CL_1001602 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0013694)) # Class: obo:CL_1001603 (lung macrophage) @@ -30552,6 +34328,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-0576") oboInOwl:has AnnotationAssertion(oboInOwl:inSubset obo:CL_1001603 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_1001603 "lung macrophage") EquivalentClasses(obo:CL_1001603 ObjectIntersectionOf(obo:CL_0000235 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002048))) +SubClassOf(obo:CL_1001603 obo:CL_0000235) +SubClassOf(obo:CL_1001603 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002048)) # Class: obo:CL_1001606 (foreskin keratinocyte) @@ -30559,6 +34337,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "NPX:PDR") obo:IAO_0000115 obo AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001606 "CALOHA:TS-0385") AnnotationAssertion(rdfs:label obo:CL_1001606 "foreskin keratinocyte") EquivalentClasses(obo:CL_1001606 ObjectIntersectionOf(obo:CL_0000312 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001332))) +SubClassOf(obo:CL_1001606 obo:CL_0000312) +SubClassOf(obo:CL_1001606 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001332)) # Class: obo:CL_1001607 (articular chondrocyte) @@ -30568,6 +34348,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001607 "CALOHA:TS-0056") AnnotationAssertion(oboInOwl:inSubset obo:CL_1001607 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_1001607 "articular chondrocyte") EquivalentClasses(obo:CL_1001607 ObjectIntersectionOf(obo:CL_0000138 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0010996))) +SubClassOf(obo:CL_1001607 obo:CL_0000138) +SubClassOf(obo:CL_1001607 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0010996)) # Class: obo:CL_1001608 (foreskin fibroblast) @@ -30576,6 +34358,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001608 "CALOHA:TS-0384") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_1001608 "BJ fibroblast") AnnotationAssertion(rdfs:label obo:CL_1001608 "foreskin fibroblast") EquivalentClasses(obo:CL_1001608 ObjectIntersectionOf(obo:CL_0002620 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001332))) +SubClassOf(obo:CL_1001608 obo:CL_0002620) +SubClassOf(obo:CL_1001608 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001332)) # Class: obo:CL_1001609 (muscle fibroblast) @@ -30583,6 +34367,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "NPX:PDR") obo:IAO_0000115 obo AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001609 "CALOHA:TS-0643") AnnotationAssertion(rdfs:label obo:CL_1001609 "muscle fibroblast") EquivalentClasses(obo:CL_1001609 ObjectIntersectionOf(obo:CL_0000057 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001630))) +SubClassOf(obo:CL_1001609 obo:CL_0000057) +SubClassOf(obo:CL_1001609 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001630)) # Class: obo:CL_1001610 (bone marrow hematopoietic cell) @@ -30592,6 +34378,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-2109") oboInOwl:has AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-2109") oboInOwl:hasRelatedSynonym obo:CL_1001610 "bone marrow poietic cells") AnnotationAssertion(rdfs:label obo:CL_1001610 "bone marrow hematopoietic cell") EquivalentClasses(obo:CL_1001610 ObjectIntersectionOf(obo:CL_0000988 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002371))) +SubClassOf(obo:CL_1001610 obo:CL_0000988) +SubClassOf(obo:CL_1001610 obo:CL_0002092) SubClassOf(obo:CL_1001610 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0012429)) # Class: obo:CL_1001611 (cerebellar neuron) @@ -30602,6 +34390,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001611 "FMA:84665") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-2359") oboInOwl:hasRelatedSynonym obo:CL_1001611 "cerebellum neuron") AnnotationAssertion(rdfs:label obo:CL_1001611 "cerebellar neuron") EquivalentClasses(obo:CL_1001611 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002037))) +SubClassOf(obo:CL_1001611 obo:CL_2000029) +SubClassOf(obo:CL_1001611 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002037)) # Class: obo:CL_2000000 (epidermal melanocyte) @@ -30612,6 +34402,9 @@ AnnotationAssertion(oboInOwl:id obo:CL_2000000 "CL:2000000") AnnotationAssertion(rdfs:comment obo:CL_2000000 "These cells are found primarily, but not exclusively, in primates including humans") AnnotationAssertion(rdfs:label obo:CL_2000000 "epidermal melanocyte") EquivalentClasses(obo:CL_2000000 ObjectIntersectionOf(obo:CL_0000148 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001003))) +SubClassOf(obo:CL_2000000 obo:CL_0002484) +SubClassOf(obo:CL_2000000 obo:CL_1000458) +SubClassOf(obo:CL_2000000 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001003)) # Class: obo:CL_2000001 (peripheral blood mononuclear cell) @@ -30622,6 +34415,9 @@ AnnotationAssertion(oboInOwl:id obo:CL_2000001 "CL:2000001") AnnotationAssertion(oboInOwl:inSubset obo:CL_2000001 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_2000001 "peripheral blood mononuclear cell") EquivalentClasses(obo:CL_2000001 ObjectIntersectionOf(obo:CL_0000842 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000178))) +SubClassOf(obo:CL_2000001 obo:CL_0000080) +SubClassOf(obo:CL_2000001 obo:CL_0000842) +SubClassOf(obo:CL_2000001 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000178)) # Class: obo:CL_2000002 (decidual cell) @@ -30635,6 +34431,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "BTO:0005756") Annotation(oboI AnnotationAssertion(oboInOwl:id obo:CL_2000002 "CL:2000002") AnnotationAssertion(oboInOwl:inSubset obo:CL_2000002 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_2000002 "decidual cell") +SubClassOf(obo:CL_2000002 obo:CL_0000349) SubClassOf(obo:CL_2000002 obo:CL_0000499) SubClassOf(obo:CL_2000002 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002450)) SubClassOf(obo:CL_2000002 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002255)) @@ -30648,6 +34445,8 @@ AnnotationAssertion(oboInOwl:id obo:CL_2000004 "CL:2000004") AnnotationAssertion(oboInOwl:inSubset obo:CL_2000004 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_2000004 "pituitary gland cell") EquivalentClasses(obo:CL_2000004 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000007))) +SubClassOf(obo:CL_2000004 obo:CL_0002319) +SubClassOf(obo:CL_2000004 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000007)) # Class: obo:CL_2000005 (brain macroglial cell) @@ -30657,6 +34456,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000005 "2014-03-28T21:35:27Z" AnnotationAssertion(oboInOwl:id obo:CL_2000005 "CL:2000005") AnnotationAssertion(rdfs:label obo:CL_2000005 "brain macroglial cell") EquivalentClasses(obo:CL_2000005 ObjectIntersectionOf(obo:CL_0000126 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000955))) +SubClassOf(obo:CL_2000005 obo:CL_0000126) +SubClassOf(obo:CL_2000005 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000955)) # Class: obo:CL_2000006 (tonsil germinal center B cell) @@ -30667,6 +34468,8 @@ AnnotationAssertion(oboInOwl:id obo:CL_2000006 "CL:2000006") AnnotationAssertion(oboInOwl:inSubset obo:CL_2000006 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_2000006 "tonsil germinal center B cell") EquivalentClasses(obo:CL_2000006 ObjectIntersectionOf(obo:CL_0000844 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002372))) +SubClassOf(obo:CL_2000006 obo:CL_0000844) +SubClassOf(obo:CL_2000006 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002372)) # Class: obo:CL_2000007 (articular chondrocyte of knee joint) @@ -30676,6 +34479,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000007 "2014-06-04T14:40:11Z" AnnotationAssertion(oboInOwl:id obo:CL_2000007 "CL:2000007") AnnotationAssertion(rdfs:label obo:CL_2000007 "articular chondrocyte of knee joint") EquivalentClasses(obo:CL_2000007 ObjectIntersectionOf(obo:CL_1001607 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001485))) +SubClassOf(obo:CL_2000007 obo:CL_1001607) +SubClassOf(obo:CL_2000007 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001485)) # Class: obo:CL_2000008 (microvascular endothelial cell) @@ -30685,6 +34490,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000008 "2014-06-04T15:07:42Z" AnnotationAssertion(oboInOwl:id obo:CL_2000008 "CL:2000008") AnnotationAssertion(rdfs:label obo:CL_2000008 "microvascular endothelial cell") EquivalentClasses(obo:CL_2000008 ObjectIntersectionOf(obo:CL_0000071 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0008339))) +SubClassOf(obo:CL_2000008 obo:CL_0000071) +SubClassOf(obo:CL_2000008 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0008339)) # Class: obo:CL_2000009 (obsolete microvascular endothelium blood vessel endothelial cell) @@ -30704,6 +34511,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000010 "2014-06-04T15:12:06Z" AnnotationAssertion(oboInOwl:id obo:CL_2000010 "CL:2000010") AnnotationAssertion(rdfs:label obo:CL_2000010 "dermis blood vessel endothelial cell") EquivalentClasses(obo:CL_2000010 ObjectIntersectionOf(obo:CL_0000071 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002067))) +SubClassOf(obo:CL_2000010 obo:CL_0000071) +SubClassOf(obo:CL_2000010 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002067)) # Class: obo:CL_2000011 (dermis lymphatic vessel endothelial cell) @@ -30713,6 +34522,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000011 "2014-06-04T15:15:08Z" AnnotationAssertion(oboInOwl:id obo:CL_2000011 "CL:2000011") AnnotationAssertion(rdfs:label obo:CL_2000011 "dermis lymphatic vessel endothelial cell") EquivalentClasses(obo:CL_2000011 ObjectIntersectionOf(obo:CL_0002138 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002067))) +SubClassOf(obo:CL_2000011 obo:CL_0002138) +SubClassOf(obo:CL_2000011 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002067)) # Class: obo:CL_2000012 (fibroblast of pedal digit skin) @@ -30722,6 +34533,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000012 "2014-06-04T15:16:44Z" AnnotationAssertion(oboInOwl:id obo:CL_2000012 "CL:2000012") AnnotationAssertion(rdfs:label obo:CL_2000012 "fibroblast of pedal digit skin") EquivalentClasses(obo:CL_2000012 ObjectIntersectionOf(obo:CL_0002620 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003530))) +SubClassOf(obo:CL_2000012 obo:CL_0002620) +SubClassOf(obo:CL_2000012 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003530)) # Class: obo:CL_2000013 (fibroblast of skin of abdomen) @@ -30731,6 +34544,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000013 "2014-06-04T15:18:16Z" AnnotationAssertion(oboInOwl:id obo:CL_2000013 "CL:2000013") AnnotationAssertion(rdfs:label obo:CL_2000013 "fibroblast of skin of abdomen") EquivalentClasses(obo:CL_2000013 ObjectIntersectionOf(obo:CL_0002620 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001416))) +SubClassOf(obo:CL_2000013 obo:CL_0002620) +SubClassOf(obo:CL_2000013 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001416)) # Class: obo:CL_2000014 (fibroblast of upper leg skin) @@ -30740,6 +34555,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000014 "2014-06-04T15:19:44Z" AnnotationAssertion(oboInOwl:id obo:CL_2000014 "CL:2000014") AnnotationAssertion(rdfs:label obo:CL_2000014 "fibroblast of upper leg skin") EquivalentClasses(obo:CL_2000014 ObjectIntersectionOf(obo:CL_0002620 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004262))) +SubClassOf(obo:CL_2000014 obo:CL_0002620) +SubClassOf(obo:CL_2000014 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004262)) # Class: obo:CL_2000015 (fibroblast of arm) @@ -30749,6 +34566,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000015 "2014-06-04T15:29:06Z" AnnotationAssertion(oboInOwl:id obo:CL_2000015 "CL:2000015") AnnotationAssertion(rdfs:label obo:CL_2000015 "fibroblast of arm") EquivalentClasses(obo:CL_2000015 ObjectIntersectionOf(obo:CL_0002620 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001460))) +SubClassOf(obo:CL_2000015 obo:CL_0002620) +SubClassOf(obo:CL_2000015 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001460)) # Class: obo:CL_2000016 (lung microvascular endothelial cell) @@ -30759,6 +34578,7 @@ AnnotationAssertion(oboInOwl:id obo:CL_2000016 "CL:2000016") AnnotationAssertion(oboInOwl:inSubset obo:CL_2000016 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_2000016 "lung microvascular endothelial cell") EquivalentClasses(obo:CL_2000016 ObjectIntersectionOf(obo:CL_1001567 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0008339))) +SubClassOf(obo:CL_2000016 obo:CL_1001567) SubClassOf(obo:CL_2000016 obo:CL_2000008) # Class: obo:CL_2000017 (fibroblast of peridontal ligament) @@ -30769,6 +34589,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000017 "2014-06-04T16:50:33Z" AnnotationAssertion(oboInOwl:id obo:CL_2000017 "CL:2000017") AnnotationAssertion(rdfs:label obo:CL_2000017 "fibroblast of peridontal ligament") EquivalentClasses(obo:CL_2000017 ObjectIntersectionOf(obo:CL_0000057 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0008266))) +SubClassOf(obo:CL_2000017 obo:CL_0002556) +SubClassOf(obo:CL_2000017 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0008266)) # Class: obo:CL_2000018 (endothelial cell of coronary artery) @@ -30779,16 +34601,21 @@ AnnotationAssertion(oboInOwl:id obo:CL_2000018 "CL:2000018") AnnotationAssertion(oboInOwl:inSubset obo:CL_2000018 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_2000018 "endothelial cell of coronary artery") EquivalentClasses(obo:CL_2000018 ObjectIntersectionOf(obo:CL_1000413 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001621))) +SubClassOf(obo:CL_2000018 obo:CL_0010006) +SubClassOf(obo:CL_2000018 obo:CL_1000413) +SubClassOf(obo:CL_2000018 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001621)) # Class: obo:CL_2000019 (compound eye photoreceptor cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:TermGenie") obo:IAO_0000115 obo:CL_2000019 "Any photoreceptor cell that is part of a compound eye.") AnnotationAssertion(terms:contributor obo:CL_2000019 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_2000019 "2014-06-24T23:16:45Z") -AnnotationAssertion(oboInOwl:hasDbXref obo:CL_2000019 "FBbt:00004211") +AnnotationAssertion(Annotation(sssom:mapping_justification ) oboInOwl:hasDbXref obo:CL_2000019 "FBbt:00006009") AnnotationAssertion(oboInOwl:id obo:CL_2000019 "CL:2000019") AnnotationAssertion(rdfs:label obo:CL_2000019 "compound eye photoreceptor cell") EquivalentClasses(obo:CL_2000019 ObjectIntersectionOf(obo:CL_0000210 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000018))) +SubClassOf(obo:CL_2000019 obo:CL_0000287) +SubClassOf(obo:CL_2000019 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000018)) # Class: obo:CL_2000020 (inner cell mass cell) @@ -30798,6 +34625,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000020 "2014-06-24T23:16:53Z" AnnotationAssertion(oboInOwl:id obo:CL_2000020 "CL:2000020") AnnotationAssertion(rdfs:label obo:CL_2000020 "inner cell mass cell") EquivalentClasses(obo:CL_2000020 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000087))) +SubClassOf(obo:CL_2000020 obo:CL_0000000) +SubClassOf(obo:CL_2000020 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000087)) # Class: obo:CL_2000021 (sebaceous gland cell) @@ -30808,6 +34637,8 @@ AnnotationAssertion(oboInOwl:id obo:CL_2000021 "CL:2000021") AnnotationAssertion(oboInOwl:inSubset obo:CL_2000021 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_2000021 "sebaceous gland cell") EquivalentClasses(obo:CL_2000021 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001821))) +SubClassOf(obo:CL_2000021 obo:CL_0000000) +SubClassOf(obo:CL_2000021 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001821)) # Class: obo:CL_2000022 (cardiac septum cell) @@ -30817,6 +34648,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000022 "2014-06-24T23:17:07Z" AnnotationAssertion(oboInOwl:id obo:CL_2000022 "CL:2000022") AnnotationAssertion(rdfs:label obo:CL_2000022 "cardiac septum cell") EquivalentClasses(obo:CL_2000022 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002099))) +SubClassOf(obo:CL_2000022 obo:CL_0002494) +SubClassOf(obo:CL_2000022 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002099)) # Class: obo:CL_2000023 (spinal cord ventral column interneuron) @@ -30826,6 +34659,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000023 "2014-06-25T00:23:36Z" AnnotationAssertion(oboInOwl:id obo:CL_2000023 "CL:2000023") AnnotationAssertion(rdfs:label obo:CL_2000023 "spinal cord ventral column interneuron") EquivalentClasses(obo:CL_2000023 ObjectIntersectionOf(obo:CL_0000099 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0005375))) +SubClassOf(obo:CL_2000023 obo:CL_0005000) +SubClassOf(obo:CL_2000023 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0005375)) # Class: obo:CL_2000024 (spinal cord medial motor column neuron) @@ -30835,6 +34670,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000024 "2014-06-25T00:23:43Z" AnnotationAssertion(oboInOwl:id obo:CL_2000024 "CL:2000024") AnnotationAssertion(rdfs:label obo:CL_2000024 "spinal cord medial motor column neuron") EquivalentClasses(obo:CL_2000024 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0004059))) +SubClassOf(obo:CL_2000024 obo:CL_2000029) +SubClassOf(obo:CL_2000024 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0004059)) # Class: obo:CL_2000025 (spinal cord oligodendrocyte) @@ -30844,6 +34681,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000025 "2014-06-25T00:23:50Z" AnnotationAssertion(oboInOwl:id obo:CL_2000025 "CL:2000025") AnnotationAssertion(rdfs:label obo:CL_2000025 "spinal cord oligodendrocyte") EquivalentClasses(obo:CL_2000025 ObjectIntersectionOf(obo:CL_0000128 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002240))) +SubClassOf(obo:CL_2000025 obo:CL_0000128) +SubClassOf(obo:CL_2000025 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002240)) # Class: obo:CL_2000026 (obsolete cerebellum Golgi cell) @@ -30862,6 +34701,9 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000027 "2014-06-25T00:24:03Z" AnnotationAssertion(oboInOwl:id obo:CL_2000027 "CL:2000027") AnnotationAssertion(rdfs:label obo:CL_2000027 "cerebellum basket cell") EquivalentClasses(obo:CL_2000027 ObjectIntersectionOf(obo:CL_0000118 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002037))) +SubClassOf(obo:CL_2000027 obo:CL_0000118) +SubClassOf(obo:CL_2000027 obo:CL_0000402) +SubClassOf(obo:CL_2000027 obo:CL_1001611) # Class: obo:CL_2000028 (cerebellum glutamatergic neuron) @@ -30871,6 +34713,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000028 "2014-06-25T00:24:10Z" AnnotationAssertion(oboInOwl:id obo:CL_2000028 "CL:2000028") AnnotationAssertion(rdfs:label obo:CL_2000028 "cerebellum glutamatergic neuron") EquivalentClasses(obo:CL_2000028 ObjectIntersectionOf(obo:CL_0000679 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002037))) +SubClassOf(obo:CL_2000028 obo:CL_0000679) +SubClassOf(obo:CL_2000028 obo:CL_1001611) # Class: obo:CL_2000029 (central nervous system neuron) @@ -30880,6 +34724,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000029 "2014-06-25T01:17:43Z" AnnotationAssertion(oboInOwl:id obo:CL_2000029 "CL:2000029") AnnotationAssertion(rdfs:label obo:CL_2000029 "central nervous system neuron") EquivalentClasses(obo:CL_2000029 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001017))) +SubClassOf(obo:CL_2000029 obo:CL_0000540) +SubClassOf(obo:CL_2000029 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001017)) # Class: obo:CL_2000030 (hypothalamus cell) @@ -30889,6 +34735,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000030 "2014-06-25T01:17:50Z" AnnotationAssertion(oboInOwl:id obo:CL_2000030 "CL:2000030") AnnotationAssertion(rdfs:label obo:CL_2000030 "hypothalamus cell") EquivalentClasses(obo:CL_2000030 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001898))) +SubClassOf(obo:CL_2000030 obo:CL_0002319) +SubClassOf(obo:CL_2000030 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001898)) # Class: obo:CL_2000031 (lateral line ganglion neuron) @@ -30898,10 +34746,13 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000031 "2014-06-25T01:17:57Z" AnnotationAssertion(oboInOwl:id obo:CL_2000031 "CL:2000031") AnnotationAssertion(rdfs:label obo:CL_2000031 "lateral line ganglion neuron") EquivalentClasses(obo:CL_2000031 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_2000120))) +SubClassOf(obo:CL_2000031 obo:CL_0000540) +SubClassOf(obo:CL_2000031 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_2000120)) # Class: obo:CL_2000032 (peripheral nervous system neuron) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:TermGenie") Annotation(oboInOwl:hasDbXref "ISBN:0721662544") obo:IAO_0000115 obo:CL_2000032 "A neuron that is part of a peripheral nervous system.") +AnnotationAssertion(obo:RO_0002175 obo:CL_2000032 obo:NCBITaxon_9606) AnnotationAssertion(terms:contributor obo:CL_2000032 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_2000032 "2014-06-25T02:28:17Z") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_2000032 "FMA:84664") @@ -30909,8 +34760,11 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_2000032 "PNS neuron") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_2000032 "peripheral neuron") AnnotationAssertion(oboInOwl:id obo:CL_2000032 "CL:2000032") AnnotationAssertion(oboInOwl:inSubset obo:CL_2000032 cl:cellxgene_subset) +AnnotationAssertion(oboInOwl:inSubset obo:CL_2000032 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_2000032 "peripheral nervous system neuron") EquivalentClasses(obo:CL_2000032 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000010))) +SubClassOf(obo:CL_2000032 obo:CL_0000540) +SubClassOf(obo:CL_2000032 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000010)) # Class: obo:CL_2000033 (limb basal cell of epidermis) @@ -30920,6 +34774,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000033 "2014-06-25T02:28:25Z" AnnotationAssertion(oboInOwl:id obo:CL_2000033 "CL:2000033") AnnotationAssertion(rdfs:label obo:CL_2000033 "limb basal cell of epidermis") EquivalentClasses(obo:CL_2000033 ObjectIntersectionOf(obo:CL_0002187 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002101))) +SubClassOf(obo:CL_2000033 obo:CL_0002187) +SubClassOf(obo:CL_2000033 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002101)) # Class: obo:CL_2000034 (anterior lateral line neuromast hair cell) @@ -30929,6 +34785,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000034 "2014-06-25T03:44:37Z" AnnotationAssertion(oboInOwl:id obo:CL_2000034 "CL:2000034") AnnotationAssertion(rdfs:label obo:CL_2000034 "anterior lateral line neuromast hair cell") EquivalentClasses(obo:CL_2000034 ObjectIntersectionOf(obo:CL_0000856 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_2001470))) +SubClassOf(obo:CL_2000034 obo:CL_0000856) +SubClassOf(obo:CL_2000034 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_2001470)) # Class: obo:CL_2000035 (anterior lateral line neuromast mantle cell) @@ -30938,6 +34796,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000035 "2014-06-25T03:44:44Z" AnnotationAssertion(oboInOwl:id obo:CL_2000035 "CL:2000035") AnnotationAssertion(rdfs:label obo:CL_2000035 "anterior lateral line neuromast mantle cell") EquivalentClasses(obo:CL_2000035 ObjectIntersectionOf(obo:CL_0000851 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_2001470))) +SubClassOf(obo:CL_2000035 obo:CL_0000851) +SubClassOf(obo:CL_2000035 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_2001470)) # Class: obo:CL_2000036 (anterior lateral line neuromast supporting cell) @@ -30948,6 +34808,8 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_2000036 "anterior lateral li AnnotationAssertion(oboInOwl:id obo:CL_2000036 "CL:2000036") AnnotationAssertion(rdfs:label obo:CL_2000036 "anterior lateral line neuromast supporting cell") EquivalentClasses(obo:CL_2000036 ObjectIntersectionOf(obo:CL_0000852 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_2001470))) +SubClassOf(obo:CL_2000036 obo:CL_0000852) +SubClassOf(obo:CL_2000036 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_2001470)) # Class: obo:CL_2000037 (posterior lateral line neuromast hair cell) @@ -30957,6 +34819,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000037 "2014-06-25T03:44:57Z" AnnotationAssertion(oboInOwl:id obo:CL_2000037 "CL:2000037") AnnotationAssertion(rdfs:label obo:CL_2000037 "posterior lateral line neuromast hair cell") EquivalentClasses(obo:CL_2000037 ObjectIntersectionOf(obo:CL_0000856 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0006334))) +SubClassOf(obo:CL_2000037 obo:CL_0000856) +SubClassOf(obo:CL_2000037 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0006334)) # Class: obo:CL_2000038 (posterior lateral line neuromast mantle cell) @@ -30966,6 +34830,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000038 "2014-06-25T03:45:04Z" AnnotationAssertion(oboInOwl:id obo:CL_2000038 "CL:2000038") AnnotationAssertion(rdfs:label obo:CL_2000038 "posterior lateral line neuromast mantle cell") EquivalentClasses(obo:CL_2000038 ObjectIntersectionOf(obo:CL_0000851 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0006334))) +SubClassOf(obo:CL_2000038 obo:CL_0000851) +SubClassOf(obo:CL_2000038 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0006334)) # Class: obo:CL_2000039 (posterior lateral line neuromast supporting cell) @@ -30976,6 +34842,8 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_2000039 "posterior lateral l AnnotationAssertion(oboInOwl:id obo:CL_2000039 "CL:2000039") AnnotationAssertion(rdfs:label obo:CL_2000039 "posterior lateral line neuromast supporting cell") EquivalentClasses(obo:CL_2000039 ObjectIntersectionOf(obo:CL_0000852 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0006334))) +SubClassOf(obo:CL_2000039 obo:CL_0000852) +SubClassOf(obo:CL_2000039 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0006334)) # Class: obo:CL_2000040 (bladder microvascular endothelial cell) @@ -30987,6 +34855,8 @@ AnnotationAssertion(oboInOwl:id obo:CL_2000040 "CL:2000040") AnnotationAssertion(oboInOwl:inSubset obo:CL_2000040 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_2000040 "bladder microvascular endothelial cell") EquivalentClasses(obo:CL_2000040 ObjectIntersectionOf(obo:CL_2000008 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001255))) +SubClassOf(obo:CL_2000040 obo:CL_1001319) +SubClassOf(obo:CL_2000040 obo:CL_2000008) # Class: obo:CL_2000041 (dermis microvascular lymphatic vessel endothelial cell) @@ -30997,6 +34867,8 @@ AnnotationAssertion(oboInOwl:id obo:CL_2000041 "CL:2000041") AnnotationAssertion(oboInOwl:inSubset obo:CL_2000041 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_2000041 "dermis microvascular lymphatic vessel endothelial cell") EquivalentClasses(obo:CL_2000041 ObjectIntersectionOf(obo:CL_2000011 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0008339))) +SubClassOf(obo:CL_2000041 obo:CL_2000011) +SubClassOf(obo:CL_2000041 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0008339)) # Class: obo:CL_2000042 (embryonic fibroblast) @@ -31007,6 +34879,8 @@ AnnotationAssertion(oboInOwl:id obo:CL_2000042 "CL:2000042") AnnotationAssertion(oboInOwl:inSubset obo:CL_2000042 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_2000042 "embryonic fibroblast") EquivalentClasses(obo:CL_2000042 ObjectIntersectionOf(obo:CL_0000057 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000922))) +SubClassOf(obo:CL_2000042 obo:CL_0000057) +SubClassOf(obo:CL_2000042 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000922)) # Class: obo:CL_2000043 (brain pericyte) @@ -31017,6 +34891,8 @@ AnnotationAssertion(oboInOwl:id obo:CL_2000043 "CL:2000043") AnnotationAssertion(oboInOwl:inSubset obo:CL_2000043 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_2000043 "brain pericyte") EquivalentClasses(obo:CL_2000043 ObjectIntersectionOf(obo:CL_0000669 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000955))) +SubClassOf(obo:CL_2000043 obo:CL_0002575) +SubClassOf(obo:CL_2000043 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000955)) # Class: obo:CL_2000044 (brain microvascular endothelial cell) @@ -31026,15 +34902,22 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000044 "2014-07-09T00:24:53Z" AnnotationAssertion(oboInOwl:id obo:CL_2000044 "CL:2000044") AnnotationAssertion(rdfs:label obo:CL_2000044 "brain microvascular endothelial cell") EquivalentClasses(obo:CL_2000044 ObjectIntersectionOf(obo:CL_2000008 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000955))) +SubClassOf(obo:CL_2000044 obo:CL_0002319) +SubClassOf(obo:CL_2000044 obo:CL_2000008) +SubClassOf(obo:CL_2000044 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000955)) # Class: obo:CL_2000045 (foreskin melanocyte) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:TermGenie") obo:IAO_0000115 obo:CL_2000045 "Any melanocyte that is part of a prepuce of penis.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:TermGenie") obo:IAO_0000115 obo:CL_2000045 "Any melanocyte of skin that is part of a skin of prepuce of penis.") +AnnotationAssertion(terms:contributor obo:CL_2000045 ) AnnotationAssertion(terms:contributor obo:CL_2000045 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_2000045 "2014-07-09T00:45:07Z") +AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_2000045 "melanocyte of foreskin") AnnotationAssertion(oboInOwl:id obo:CL_2000045 "CL:2000045") AnnotationAssertion(rdfs:label obo:CL_2000045 "foreskin melanocyte") -EquivalentClasses(obo:CL_2000045 ObjectIntersectionOf(obo:CL_0000148 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001332))) +EquivalentClasses(obo:CL_2000045 ObjectIntersectionOf(obo:CL_1000458 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001471))) +SubClassOf(obo:CL_2000045 obo:CL_1000458) +SubClassOf(obo:CL_2000045 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001471)) # Class: obo:CL_2000046 (ventricular cardiac muscle cell) @@ -31045,6 +34928,8 @@ AnnotationAssertion(oboInOwl:id obo:CL_2000046 "CL:2000046") AnnotationAssertion(oboInOwl:inSubset obo:CL_2000046 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_2000046 "ventricular cardiac muscle cell") EquivalentClasses(obo:CL_2000046 ObjectIntersectionOf(obo:CL_0000746 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002082))) +SubClassOf(obo:CL_2000046 obo:CL_0000746) +SubClassOf(obo:CL_2000046 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002082)) # Class: obo:CL_2000047 (brainstem motor neuron) @@ -31054,6 +34939,9 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000047 "2014-10-02T23:52:53Z" AnnotationAssertion(oboInOwl:id obo:CL_2000047 "CL:2000047") AnnotationAssertion(rdfs:label obo:CL_2000047 "brainstem motor neuron") EquivalentClasses(obo:CL_2000047 ObjectIntersectionOf(obo:CL_0000100 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002298))) +SubClassOf(obo:CL_2000047 obo:CL_0000100) +SubClassOf(obo:CL_2000047 obo:CL_2000029) +SubClassOf(obo:CL_2000047 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002298)) # Class: obo:CL_2000048 (anterior horn motor neuron) @@ -31067,6 +34955,7 @@ AnnotationAssertion(oboInOwl:id obo:CL_2000048 "CL:2000048") AnnotationAssertion(rdfs:comment obo:CL_2000048 "Yang & Connolly (DOI:10.1016/B978-0-323-37101-8.00140-5) classify these as alpha motor neurons. Consider reflecting this if more references support this.") AnnotationAssertion(rdfs:label obo:CL_2000048 "anterior horn motor neuron") SubClassOf(obo:CL_2000048 obo:CL_0008039) +SubClassOf(obo:CL_2000048 obo:CL_0011001) SubClassOf(obo:CL_2000048 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002257)) # Class: obo:CL_2000049 (primary motor cortex pyramidal cell) @@ -31078,6 +34967,8 @@ AnnotationAssertion(oboInOwl:id obo:CL_2000049 "CL:2000049") AnnotationAssertion(rdfs:comment obo:CL_2000049 "http://www.ncbi.nlm.nih.gov/pubmed/12524689") AnnotationAssertion(rdfs:label obo:CL_2000049 "primary motor cortex pyramidal cell") EquivalentClasses(obo:CL_2000049 ObjectIntersectionOf(obo:CL_0000598 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001384))) +SubClassOf(obo:CL_2000049 obo:CL_4023111) +SubClassOf(obo:CL_2000049 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001384)) # Class: obo:CL_2000050 (obsolete retina retinal ganglion cell) @@ -31097,6 +34988,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000051 "2014-10-06T18:58:47Z" AnnotationAssertion(oboInOwl:id obo:CL_2000051 "CL:2000051") AnnotationAssertion(rdfs:label obo:CL_2000051 "splenic fibroblast") EquivalentClasses(obo:CL_2000051 ObjectIntersectionOf(obo:CL_0000057 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002106))) +SubClassOf(obo:CL_2000051 obo:CL_0000057) +SubClassOf(obo:CL_2000051 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002106)) # Class: obo:CL_2000052 (umbilical artery endothelial cell) @@ -31107,6 +35000,9 @@ AnnotationAssertion(oboInOwl:id obo:CL_2000052 "CL:2000052") AnnotationAssertion(rdfs:comment obo:CL_2000052 "http://www.sciencellonline.com/site/productInformation.php?keyword=8010") AnnotationAssertion(rdfs:label obo:CL_2000052 "umbilical artery endothelial cell") EquivalentClasses(obo:CL_2000052 ObjectIntersectionOf(obo:CL_1000413 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002331))) +SubClassOf(obo:CL_2000052 obo:CL_0000349) +SubClassOf(obo:CL_2000052 obo:CL_1000413) +SubClassOf(obo:CL_2000052 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002331)) # Class: obo:CL_2000053 (splenic endothelial cell) @@ -31119,6 +35015,8 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_2000053 core:human_reference_atlas) AnnotationAssertion(rdfs:comment obo:CL_2000053 "http://www.sciencellonline.com/site/productInformation.php?keyword=5500") AnnotationAssertion(rdfs:label obo:CL_2000053 "splenic endothelial cell") EquivalentClasses(obo:CL_2000053 ObjectIntersectionOf(obo:CL_0000115 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002106))) +SubClassOf(obo:CL_2000053 obo:CL_0000115) +SubClassOf(obo:CL_2000053 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002106)) # Class: obo:CL_2000054 (hepatic pit cell) @@ -31141,6 +35039,8 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_2000055 cl:cellxgene_subset) AnnotationAssertion(rdfs:comment obo:CL_2000055 "http://www.jleukbio.org/content/66/2/322.abstract") AnnotationAssertion(rdfs:label obo:CL_2000055 "liver dendritic cell") EquivalentClasses(obo:CL_2000055 ObjectIntersectionOf(obo:CL_0000451 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002107))) +SubClassOf(obo:CL_2000055 obo:CL_0000451) +SubClassOf(obo:CL_2000055 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002107)) # Class: obo:CL_2000056 (Meynert cell) @@ -31149,8 +35049,7 @@ AnnotationAssertion(terms:contributor obo:CL_2000056 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_2000062 "2014-10-07T17:55:56Z") AnnotationAssertion(oboInOwl:id obo:CL_2000062 "CL:2000062") +AnnotationAssertion(oboInOwl:inSubset obo:CL_2000062 core:human_reference_atlas) AnnotationAssertion(rdfs:comment obo:CL_2000062 "http://www.ncbi.nlm.nih.gov/books/NBK53245/") AnnotationAssertion(rdfs:label obo:CL_2000062 "placental villus capillary endothelial cell") EquivalentClasses(obo:CL_2000062 ObjectIntersectionOf(obo:CL_0002144 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0010005))) +SubClassOf(obo:CL_2000062 obo:CL_0002144) +SubClassOf(obo:CL_2000062 obo:CL_0009092) +SubClassOf(obo:CL_2000062 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0010005)) # Class: obo:CL_2000063 (ovarian fibroblast) @@ -31230,6 +35145,8 @@ AnnotationAssertion(oboInOwl:id obo:CL_2000063 "CL:2000063") AnnotationAssertion(rdfs:comment obo:CL_2000063 "http://www.sciencellonline.com/site/productInformation.php?keyword=7330") AnnotationAssertion(rdfs:label obo:CL_2000063 "ovarian fibroblast") EquivalentClasses(obo:CL_2000063 ObjectIntersectionOf(obo:CL_0000057 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000992))) +SubClassOf(obo:CL_2000063 obo:CL_0000057) +SubClassOf(obo:CL_2000063 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000992)) # Class: obo:CL_2000064 (ovarian surface epithelial cell) @@ -31241,6 +35158,8 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_2000064 cl:cellxgene_subset) AnnotationAssertion(rdfs:comment obo:CL_2000064 "http://www.sciencellonline.com/site/productInformation.php?keyword=7310") AnnotationAssertion(rdfs:label obo:CL_2000064 "ovarian surface epithelial cell") EquivalentClasses(obo:CL_2000064 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000992))) +SubClassOf(obo:CL_2000064 obo:CL_0000066) +SubClassOf(obo:CL_2000064 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000992)) # Class: obo:CL_2000065 (ovarian microvascular endothelial cell) @@ -31251,6 +35170,9 @@ AnnotationAssertion(oboInOwl:id obo:CL_2000065 "CL:2000065") AnnotationAssertion(rdfs:comment obo:CL_2000065 "http://www.sciencellonline.com/site/productInformation.php?keyword=7300") AnnotationAssertion(rdfs:label obo:CL_2000065 "ovarian microvascular endothelial cell") EquivalentClasses(obo:CL_2000065 ObjectIntersectionOf(obo:CL_2000008 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001334))) +SubClassOf(obo:CL_2000065 obo:CL_1000296) +SubClassOf(obo:CL_2000065 obo:CL_2000008) +SubClassOf(obo:CL_2000065 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001334)) # Class: obo:CL_2000066 (cardiac ventricle fibroblast) @@ -31263,6 +35185,8 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_2000066 core:human_reference_atlas) AnnotationAssertion(rdfs:comment obo:CL_2000066 "http://www.sciencellonline.com/site/productInformation.php?keyword=6310") AnnotationAssertion(rdfs:label obo:CL_2000066 "cardiac ventricle fibroblast") EquivalentClasses(obo:CL_2000066 ObjectIntersectionOf(obo:CL_0000057 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002082))) +SubClassOf(obo:CL_2000066 obo:CL_0002548) +SubClassOf(obo:CL_2000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002082)) # Class: obo:CL_2000067 (cardiac atrium fibroblast) @@ -31275,6 +35199,8 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_2000067 core:human_reference_atlas) AnnotationAssertion(rdfs:comment obo:CL_2000067 "http://www.sciencellonline.com/site/productInformation.php?keyword=6320") AnnotationAssertion(rdfs:label obo:CL_2000067 "cardiac atrium fibroblast") EquivalentClasses(obo:CL_2000067 ObjectIntersectionOf(obo:CL_0000057 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002081))) +SubClassOf(obo:CL_2000067 obo:CL_0002548) +SubClassOf(obo:CL_2000067 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002081)) # Class: obo:CL_2000068 (pericardium fibroblast) @@ -31285,6 +35211,8 @@ AnnotationAssertion(oboInOwl:id obo:CL_2000068 "CL:2000068") AnnotationAssertion(rdfs:comment obo:CL_2000068 "http://www.sciencellonline.com/site/productInformation.php?keyword=6430") AnnotationAssertion(rdfs:label obo:CL_2000068 "pericardium fibroblast") EquivalentClasses(obo:CL_2000068 ObjectIntersectionOf(obo:CL_0000057 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002407))) +SubClassOf(obo:CL_2000068 obo:CL_0000057) +SubClassOf(obo:CL_2000068 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002407)) # Class: obo:CL_2000069 (gallbladder fibroblast) @@ -31295,6 +35223,8 @@ AnnotationAssertion(oboInOwl:id obo:CL_2000069 "CL:2000069") AnnotationAssertion(rdfs:comment obo:CL_2000069 "http://www.sciencellonline.com/site/productInformation.php?keyword=5430") AnnotationAssertion(rdfs:label obo:CL_2000069 "gallbladder fibroblast") EquivalentClasses(obo:CL_2000069 ObjectIntersectionOf(obo:CL_0000057 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002110))) +SubClassOf(obo:CL_2000069 obo:CL_0000057) +SubClassOf(obo:CL_2000069 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002110)) # Class: obo:CL_2000070 (optic choroid fibroblast) @@ -31305,6 +35235,8 @@ AnnotationAssertion(oboInOwl:id obo:CL_2000070 "CL:2000070") AnnotationAssertion(rdfs:comment obo:CL_2000070 "http://www.sciencellonline.com/site/productInformation.php?keyword=6620") AnnotationAssertion(rdfs:label obo:CL_2000070 "optic choroid fibroblast") EquivalentClasses(obo:CL_2000070 ObjectIntersectionOf(obo:CL_0000057 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001776))) +SubClassOf(obo:CL_2000070 obo:CL_0000057) +SubClassOf(obo:CL_2000070 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001776)) # Class: obo:CL_2000071 (mammary microvascular endothelial cell) @@ -31315,6 +35247,8 @@ AnnotationAssertion(oboInOwl:id obo:CL_2000071 "CL:2000071") AnnotationAssertion(rdfs:comment obo:CL_2000071 "http://www.sciencellonline.com/site/productInformation.php?keyword=7600") AnnotationAssertion(rdfs:label obo:CL_2000071 "mammary microvascular endothelial cell") EquivalentClasses(obo:CL_2000071 ObjectIntersectionOf(obo:CL_2000008 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000310))) +SubClassOf(obo:CL_2000071 obo:CL_2000008) +SubClassOf(obo:CL_2000071 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000310)) # Class: obo:CL_2000072 (adipose microvascular endothelial cell) @@ -31325,6 +35259,9 @@ AnnotationAssertion(oboInOwl:id obo:CL_2000072 "CL:2000072") AnnotationAssertion(rdfs:comment obo:CL_2000072 "http://www.sciencellonline.com/site/productInformation.php?keyword=7200") AnnotationAssertion(rdfs:label obo:CL_2000072 "adipose microvascular endothelial cell") EquivalentClasses(obo:CL_2000072 ObjectIntersectionOf(obo:CL_2000008 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001013))) +SubClassOf(obo:CL_2000072 obo:CL_0002320) +SubClassOf(obo:CL_2000072 obo:CL_2000008) +SubClassOf(obo:CL_2000072 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001013)) # Class: obo:CL_2000073 (migratory cardiac neural crest cell) @@ -31335,6 +35272,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:33060096") oboInOwl:hasE AnnotationAssertion(oboInOwl:id obo:CL_2000073 "CL:2000073") AnnotationAssertion(rdfs:label obo:CL_2000073 "migratory cardiac neural crest cell") EquivalentClasses(obo:CL_2000073 ObjectIntersectionOf(obo:CL_0000333 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000095))) +SubClassOf(obo:CL_2000073 obo:CL_0000333) +SubClassOf(obo:CL_2000073 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000095)) # Class: obo:CL_2000074 (splenocyte) @@ -31345,6 +35284,8 @@ AnnotationAssertion(oboInOwl:id obo:CL_2000074 "CL:2000074") AnnotationAssertion(rdfs:comment obo:CL_2000074 "Splenocytes is a vague term that refers to any one of the different white blood cell types in the spleen. This name is seen many references as such and is not explained further, necessitating a need for this terminology.") AnnotationAssertion(rdfs:label obo:CL_2000074 "splenocyte") EquivalentClasses(obo:CL_2000074 ObjectIntersectionOf(obo:CL_0000738 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002106))) +SubClassOf(obo:CL_2000074 obo:CL_0000738) +SubClassOf(obo:CL_2000074 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002106)) # Class: obo:CL_2000075 (anterior visceral endoderm cell) @@ -31354,6 +35295,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000075 "2014-11-05T01:34:13Z" AnnotationAssertion(oboInOwl:id obo:CL_2000075 "CL:2000075") AnnotationAssertion(rdfs:label obo:CL_2000075 "anterior visceral endoderm cell") EquivalentClasses(obo:CL_2000075 ObjectIntersectionOf(obo:CL_0000223 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004044))) +SubClassOf(obo:CL_2000075 obo:CL_0000223) +SubClassOf(obo:CL_2000075 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004044)) # Class: obo:CL_2000076 (hindlimb stylopod vein endothelial cell) @@ -31363,6 +35306,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000076 "2014-12-02T18:40:47Z" AnnotationAssertion(oboInOwl:id obo:CL_2000076 "CL:2000076") AnnotationAssertion(rdfs:label obo:CL_2000076 "hindlimb stylopod vein endothelial cell") EquivalentClasses(obo:CL_2000076 ObjectIntersectionOf(obo:CL_0002543 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000376))) +SubClassOf(obo:CL_2000076 obo:CL_0002543) +SubClassOf(obo:CL_2000076 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000376)) # Class: obo:CL_2000077 (skeletal muscle tissue of pectoralis major striated muscle cell) @@ -31372,6 +35317,9 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000077 "2014-12-02T18:48:17Z" AnnotationAssertion(oboInOwl:id obo:CL_2000077 "CL:2000077") AnnotationAssertion(rdfs:label obo:CL_2000077 "skeletal muscle tissue of pectoralis major striated muscle cell") EquivalentClasses(obo:CL_2000077 ObjectIntersectionOf(obo:CL_0000737 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004510))) +SubClassOf(obo:CL_2000077 obo:CL_0000188) +SubClassOf(obo:CL_2000077 obo:CL_0000737) +SubClassOf(obo:CL_2000077 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004510)) # Class: obo:CL_2000078 (placental pericyte) @@ -31381,6 +35329,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000078 "2014-12-02T18:51:03Z" AnnotationAssertion(oboInOwl:id obo:CL_2000078 "CL:2000078") AnnotationAssertion(rdfs:label obo:CL_2000078 "placental pericyte") EquivalentClasses(obo:CL_2000078 ObjectIntersectionOf(obo:CL_0000669 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001987))) +SubClassOf(obo:CL_2000078 obo:CL_0000669) +SubClassOf(obo:CL_2000078 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001987)) # Class: obo:CL_2000079 (mesenchymal stem cell of femoral bone marrow) @@ -31390,6 +35340,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000079 "2014-12-02T19:07:31Z" AnnotationAssertion(oboInOwl:id obo:CL_2000079 "CL:2000079") AnnotationAssertion(rdfs:label obo:CL_2000079 "mesenchymal stem cell of femoral bone marrow") EquivalentClasses(obo:CL_2000079 ObjectIntersectionOf(obo:CL_0002540 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000981))) +SubClassOf(obo:CL_2000079 obo:CL_0002540) +SubClassOf(obo:CL_2000079 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000981)) # Class: obo:CL_2000080 (mesenchymal stem cell of abdominal adipose tissue) @@ -31400,6 +35352,8 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_2000080 "mesenchymal stem ce AnnotationAssertion(oboInOwl:id obo:CL_2000080 "CL:2000080") AnnotationAssertion(rdfs:label obo:CL_2000080 "mesenchymal stem cell of abdominal adipose tissue") EquivalentClasses(obo:CL_2000080 ObjectIntersectionOf(obo:CL_0002570 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000916))) +SubClassOf(obo:CL_2000080 obo:CL_0002570) +SubClassOf(obo:CL_2000080 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000916)) # Class: obo:CL_2000081 (melanocyte of skin of face) @@ -31409,15 +35363,20 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000081 "2014-12-02T19:10:40Z" AnnotationAssertion(oboInOwl:id obo:CL_2000081 "CL:2000081") AnnotationAssertion(rdfs:label obo:CL_2000081 "melanocyte of skin of face") EquivalentClasses(obo:CL_2000081 ObjectIntersectionOf(obo:CL_1000458 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_1000021))) +SubClassOf(obo:CL_2000081 obo:CL_1000458) +SubClassOf(obo:CL_2000081 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_1000021)) -# Class: obo:CL_2000082 (melanocyte of foreskin) +# Class: obo:CL_2000082 (obsolete melanocyte of foreskin) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:TermGenie") obo:IAO_0000115 obo:CL_2000082 "Any melanocyte of skin that is part of a skin of prepuce of penis.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:TermGenie") obo:IAO_0000115 obo:CL_2000082 "OBSOLETE. Any melanocyte of skin that is part of a skin of prepuce of penis.") +AnnotationAssertion(obo:IAO_0000233 obo:CL_2000082 ) +AnnotationAssertion(obo:IAO_0100001 obo:CL_2000082 obo:CL_2000045) AnnotationAssertion(terms:contributor obo:CL_2000082 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_2000082 "2014-12-02T19:10:45Z") AnnotationAssertion(oboInOwl:id obo:CL_2000082 "CL:2000082") -AnnotationAssertion(rdfs:label obo:CL_2000082 "melanocyte of foreskin") -EquivalentClasses(obo:CL_2000082 ObjectIntersectionOf(obo:CL_1000458 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001471))) +AnnotationAssertion(rdfs:comment obo:CL_2000082 "Term was merged into foreskin melanocyte CL_2000045") +AnnotationAssertion(rdfs:label obo:CL_2000082 "obsolete melanocyte of foreskin") +AnnotationAssertion(owl:deprecated obo:CL_2000082 "true"^^xsd:boolean) # Class: obo:CL_2000083 (hair follicle dermal papilla cell of scalp) @@ -31427,6 +35386,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000083 "2014-12-02T19:10:50Z" AnnotationAssertion(oboInOwl:id obo:CL_2000083 "CL:2000083") AnnotationAssertion(rdfs:label obo:CL_2000083 "hair follicle dermal papilla cell of scalp") EquivalentClasses(obo:CL_2000083 ObjectIntersectionOf(obo:CL_0000346 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000403))) +SubClassOf(obo:CL_2000083 obo:CL_0000346) +SubClassOf(obo:CL_2000083 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000403)) # Class: obo:CL_2000084 (conjunctiva goblet cell) @@ -31436,6 +35397,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000084 "2014-12-02T19:28:38Z" AnnotationAssertion(oboInOwl:id obo:CL_2000084 "CL:2000084") AnnotationAssertion(rdfs:label obo:CL_2000084 "conjunctiva goblet cell") EquivalentClasses(obo:CL_2000084 ObjectIntersectionOf(obo:CL_0000160 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001811))) +SubClassOf(obo:CL_2000084 obo:CL_0000160) +SubClassOf(obo:CL_2000084 obo:CL_1000432) # Class: obo:CL_2000085 (mononuclear cell of umbilical cord) @@ -31445,6 +35408,9 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000085 "2014-12-02T20:14:16Z" AnnotationAssertion(oboInOwl:id obo:CL_2000085 "CL:2000085") AnnotationAssertion(rdfs:label obo:CL_2000085 "mononuclear cell of umbilical cord") EquivalentClasses(obo:CL_2000085 ObjectIntersectionOf(obo:CL_0000842 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002331))) +SubClassOf(obo:CL_2000085 obo:CL_0000349) +SubClassOf(obo:CL_2000085 obo:CL_0000842) +SubClassOf(obo:CL_2000085 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002331)) # Class: obo:CL_2000086 (neocortex basket cell) @@ -31454,6 +35420,9 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000086 "2014-12-24T00:37:19Z" AnnotationAssertion(oboInOwl:id obo:CL_2000086 "CL:2000086") AnnotationAssertion(rdfs:label obo:CL_2000086 "neocortex basket cell") EquivalentClasses(obo:CL_2000086 ObjectIntersectionOf(obo:CL_0000118 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001950))) +SubClassOf(obo:CL_2000086 obo:CL_0000118) +SubClassOf(obo:CL_2000086 obo:CL_0010011) +SubClassOf(obo:CL_2000086 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001950)) # Class: obo:CL_2000087 (dentate gyrus of hippocampal formation basket cell) @@ -31463,6 +35432,10 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000087 "2014-12-24T00:37:24Z" AnnotationAssertion(oboInOwl:id obo:CL_2000087 "CL:2000087") AnnotationAssertion(rdfs:label obo:CL_2000087 "dentate gyrus of hippocampal formation basket cell") EquivalentClasses(obo:CL_2000087 ObjectIntersectionOf(obo:CL_0000118 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001885))) +SubClassOf(obo:CL_2000087 obo:CL_0000118) +SubClassOf(obo:CL_2000087 obo:CL_0010011) +SubClassOf(obo:CL_2000087 obo:CL_1001569) +SubClassOf(obo:CL_2000087 obo:CL_4023062) # Class: obo:CL_2000088 (Ammon's horn basket cell) @@ -31472,6 +35445,10 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000088 "2014-12-24T00:37:30Z" AnnotationAssertion(oboInOwl:id obo:CL_2000088 "CL:2000088") AnnotationAssertion(rdfs:label obo:CL_2000088 "Ammon's horn basket cell") EquivalentClasses(obo:CL_2000088 ObjectIntersectionOf(obo:CL_0000118 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001954))) +SubClassOf(obo:CL_2000088 obo:CL_0000118) +SubClassOf(obo:CL_2000088 obo:CL_0010011) +SubClassOf(obo:CL_2000088 obo:CL_1001569) +SubClassOf(obo:CL_2000088 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001954)) # Class: obo:CL_2000089 (dentate gyrus granule cell) @@ -31483,6 +35460,9 @@ AnnotationAssertion(oboInOwl:id obo:CL_2000089 "CL:2000089") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:17765709") rdfs:comment obo:CL_2000089 "As far as can be determined, all dentate granule cells appear to project to CA3 and the axon trajectory is partially correlated with the position of the parent cell body.") AnnotationAssertion(rdfs:label obo:CL_2000089 "dentate gyrus granule cell") EquivalentClasses(obo:CL_2000089 ObjectIntersectionOf(obo:CL_0001033 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0005381))) +SubClassOf(obo:CL_2000089 obo:CL_0001033) +SubClassOf(obo:CL_2000089 obo:CL_4023062) +SubClassOf(obo:CL_2000089 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0005381)) # Class: obo:CL_2000090 (dentate gyrus of hippocampal formation stellate cell) @@ -31492,6 +35472,9 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000090 "2015-02-23T05:48:40Z" AnnotationAssertion(oboInOwl:id obo:CL_2000090 "CL:2000090") AnnotationAssertion(rdfs:label obo:CL_2000090 "dentate gyrus of hippocampal formation stellate cell") EquivalentClasses(obo:CL_2000090 ObjectIntersectionOf(obo:CL_0000122 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001885))) +SubClassOf(obo:CL_2000090 obo:CL_0000122) +SubClassOf(obo:CL_2000090 obo:CL_0012001) +SubClassOf(obo:CL_2000090 obo:CL_4023062) # Class: obo:CL_2000091 (endometrial microvascular endothelial cell) @@ -31503,6 +35486,9 @@ AnnotationAssertion(oboInOwl:id obo:CL_2000091 "CL:2000091") AnnotationAssertion(oboInOwl:inSubset obo:CL_2000091 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_2000091 "endometrial microvascular endothelial cell") EquivalentClasses(obo:CL_2000091 ObjectIntersectionOf(obo:CL_2000008 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0015172))) +SubClassOf(obo:CL_2000091 obo:CL_0009095) +SubClassOf(obo:CL_2000091 obo:CL_2000008) +SubClassOf(obo:CL_2000091 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0015172)) # Class: obo:CL_2000092 (hair follicular keratinocyte) @@ -31513,6 +35499,8 @@ AnnotationAssertion(oboInOwl:id obo:CL_2000092 "CL:2000092") AnnotationAssertion(oboInOwl:inSubset obo:CL_2000092 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_2000092 "hair follicular keratinocyte") EquivalentClasses(obo:CL_2000092 ObjectIntersectionOf(obo:CL_0000312 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002073))) +SubClassOf(obo:CL_2000092 obo:CL_0000312) +SubClassOf(obo:CL_2000092 obo:CL_0002559) # Class: obo:CL_2000093 (bronchus fibroblast of lung) @@ -31523,6 +35511,8 @@ AnnotationAssertion(oboInOwl:id obo:CL_2000093 "CL:2000093") AnnotationAssertion(oboInOwl:inSubset obo:CL_2000093 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_2000093 "bronchus fibroblast of lung") EquivalentClasses(obo:CL_2000093 ObjectIntersectionOf(obo:CL_0002553 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002185))) +SubClassOf(obo:CL_2000093 obo:CL_0002553) +SubClassOf(obo:CL_2000093 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002185)) # Class: obo:CL_2000094 (nasal cavity respiratory epithelium epithelial cell of viscerocranial mucosa) @@ -31532,6 +35522,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000094 "2015-03-31T22:25:17Z" AnnotationAssertion(oboInOwl:id obo:CL_2000094 "CL:2000094") AnnotationAssertion(rdfs:label obo:CL_2000094 "nasal cavity respiratory epithelium epithelial cell of viscerocranial mucosa") EquivalentClasses(obo:CL_2000094 ObjectIntersectionOf(obo:CL_1000441 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005385))) +SubClassOf(obo:CL_2000094 obo:CL_1000441) +SubClassOf(obo:CL_2000094 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005385)) # Class: obo:CL_2000095 (cord blood hematopoietic stem cell) @@ -31542,6 +35534,9 @@ AnnotationAssertion(oboInOwl:id obo:CL_2000095 "CL:2000095") AnnotationAssertion(oboInOwl:inSubset obo:CL_2000095 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_2000095 "cord blood hematopoietic stem cell") EquivalentClasses(obo:CL_2000095 ObjectIntersectionOf(obo:CL_0000037 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0012168))) +SubClassOf(obo:CL_2000095 obo:CL_0002246) +SubClassOf(obo:CL_2000095 obo:CL_0002352) +SubClassOf(obo:CL_2000095 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0012168)) # Class: obo:CL_2000096 (fibroblast of the reticular layer of dermis) @@ -31551,6 +35546,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000096 "2015-08-11T16:28:16Z" AnnotationAssertion(oboInOwl:id obo:CL_2000096 "CL:2000096") AnnotationAssertion(rdfs:label obo:CL_2000096 "fibroblast of the reticular layer of dermis") EquivalentClasses(obo:CL_2000096 ObjectIntersectionOf(obo:CL_0000057 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001993))) +SubClassOf(obo:CL_2000096 obo:CL_0002551) +SubClassOf(obo:CL_2000096 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001993)) # Class: obo:CL_2000097 (midbrain dopaminergic neuron) @@ -31560,6 +35557,9 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_2000097 "2015-12-03T16:42:40Z" AnnotationAssertion(oboInOwl:id obo:CL_2000097 "CL:2000097") AnnotationAssertion(rdfs:label obo:CL_2000097 "midbrain dopaminergic neuron") EquivalentClasses(obo:CL_2000097 ObjectIntersectionOf(obo:CL_0000700 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001891))) +SubClassOf(obo:CL_2000097 obo:CL_0000700) +SubClassOf(obo:CL_2000097 obo:CL_2000029) +SubClassOf(obo:CL_2000097 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001891)) # Class: obo:CL_3000000 (ciliated epithelial cell of esophagus) @@ -31569,16 +35569,21 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_3000000 "2019-02-09T16:40:30Z" AnnotationAssertion(oboInOwl:id obo:CL_3000000 "CL:3000000") AnnotationAssertion(rdfs:label obo:CL_3000000 "ciliated epithelial cell of esophagus") EquivalentClasses(obo:CL_3000000 ObjectIntersectionOf(obo:CL_0000067 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001976))) +SubClassOf(obo:CL_3000000 obo:CL_0000067) +SubClassOf(obo:CL_3000000 obo:CL_0002252) +SubClassOf(obo:CL_3000000 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001976)) # Class: obo:CL_3000001 (Hofbauer cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:CellBLAST") Annotation(oboInOwl:hasDbXref "PMID:30429548") Annotation(oboInOwl:hasDbXref "PMID:30498493") Annotation(oboInOwl:hasDbXref "PMID:34745147") Annotation(oboInOwl:hasDbXref "PMID:35438172") obo:IAO_0000115 obo:CL_3000001 "A tissue-resident macrophage that is part of the placenta. A Hofbauer cell expresses high levels of growth factors and metalloproteinases that support vasculogenesis, angiogenesis, branching morphogenesis and tissue remodeling. A Hofbauer cell has a fetal origin and is present throughout pregnancy.") +AnnotationAssertion(obo:RO_0002175 obo:CL_3000001 obo:NCBITaxon_9606) AnnotationAssertion(terms:contributor obo:CL_3000001 ) AnnotationAssertion(terms:contributor obo:CL_3000001 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_3000001 "2019-02-18T19:41:20Z") AnnotationAssertion(Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_3000001 "HBC") AnnotationAssertion(oboInOwl:id obo:CL_3000001 "CL:3000001") AnnotationAssertion(oboInOwl:inSubset obo:CL_3000001 cl:cellxgene_subset) +AnnotationAssertion(oboInOwl:inSubset obo:CL_3000001 core:human_reference_atlas) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:30498493") rdfs:comment obo:CL_3000001 "Hofbauer cells are a heterogenic group of macrophages that resemble M2-like cells. Initially described in chorionic villi in humans, a Hofbauer cell is now often used to describe any fetal-derived placental macrophage that resides within the placental villous core, amnion, and chorion laeve.") AnnotationAssertion(rdfs:label obo:CL_3000001 "Hofbauer cell") SubClassOf(obo:CL_3000001 obo:CL_0000864) @@ -31594,6 +35599,8 @@ AnnotationAssertion(oboInOwl:id obo:CL_3000002 "CL:3000002") AnnotationAssertion(oboInOwl:inSubset obo:CL_3000002 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_3000002 "sympathetic noradrenergic neuron") EquivalentClasses(obo:CL_3000002 ObjectIntersectionOf(obo:CL_0011103 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061533))) +SubClassOf(obo:CL_3000002 obo:CL_0008025) +SubClassOf(obo:CL_3000002 obo:CL_0011103) # Class: obo:CL_3000003 (sympathetic cholinergic neuron) @@ -31603,6 +35610,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_3000003 "2019-02-25T19:32:20Z" AnnotationAssertion(oboInOwl:id obo:CL_3000003 "CL:3000003") AnnotationAssertion(rdfs:label obo:CL_3000003 "sympathetic cholinergic neuron") EquivalentClasses(obo:CL_3000003 ObjectIntersectionOf(obo:CL_0011103 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0014055))) +SubClassOf(obo:CL_3000003 obo:CL_0000108) +SubClassOf(obo:CL_3000003 obo:CL_0011103) # Class: obo:CL_3000004 (peripheral sensory neuron) @@ -31612,6 +35621,8 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_3000004 "2019-02-25T19:34:33Z" AnnotationAssertion(oboInOwl:id obo:CL_3000004 "CL:3000004") AnnotationAssertion(rdfs:label obo:CL_3000004 "peripheral sensory neuron") EquivalentClasses(obo:CL_3000004 ObjectIntersectionOf(obo:CL_2000032 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050906))) +SubClassOf(obo:CL_3000004 obo:CL_0000101) +SubClassOf(obo:CL_3000004 obo:CL_2000032) # Class: obo:CL_4006000 (fibroblast of breast) @@ -31622,6 +35633,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_4006000 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_4006000 "fibroblast of breast") EquivalentClasses(obo:CL_4006000 ObjectIntersectionOf(obo:CL_0000057 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000310))) SubClassOf(obo:CL_4006000 obo:CL_0000057) +SubClassOf(obo:CL_4006000 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000310)) # Class: obo:CL_4006001 (fibroblast of skin of scalp) @@ -31630,7 +35642,8 @@ AnnotationAssertion(terms:contributor obo:CL_4006001 ) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_4023008 "ILX:0770100") -AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023008 "IT projecting neuron") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1038/s41467-021-24565-z") oboInOwl:hasExactSynonym obo:CL_4023008 "IT neuron") AnnotationAssertion(oboInOwl:inSubset obo:CL_4023008 cl:BDS_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_4023008 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_4023008 "intratelencephalic-projecting glutamatergic cortical neuron") EquivalentClasses(obo:CL_4023008 ObjectIntersectionOf(obo:CL_0000679 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070034) ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000956))) +SubClassOf(obo:CL_4023008 obo:CL_0000679) +SubClassOf(obo:CL_4023008 obo:CL_0010012) +SubClassOf(obo:CL_4023008 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070034)) # Class: obo:CL_4023009 (extratelencephalic-projecting glutamatergic cortical neuron) @@ -31728,6 +35742,9 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_4023009 cl:BDS_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_4023009 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_4023009 "extratelencephalic-projecting glutamatergic cortical neuron") EquivalentClasses(obo:CL_4023009 ObjectIntersectionOf(obo:CL_0000679 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070028) ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000956))) +SubClassOf(obo:CL_4023009 obo:CL_0000679) +SubClassOf(obo:CL_4023009 obo:CL_0010012) +SubClassOf(obo:CL_4023009 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070028)) # Class: obo:CL_4023010 (alpha7 GABAergic cortical interneuron (Mmus)) @@ -31738,22 +35755,24 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023010 "A7 cell (Mus muscul AnnotationAssertion(oboInOwl:inSubset obo:CL_4023010 cl:BDS_subset) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOI:10.1101/2020.10.19.343129") Annotation(oboInOwl:hasDbXref "PMID:30413647") Annotation(oboInOwl:hasDbXref "PMID:33184512") rdfs:comment obo:CL_4023010 "Unlike typical Lamp5 electrophysiology, A7 cells have Vip- and Sst-like firing properties, with active depolarizing hump at near-threshold membrane potentials, and larger hyperpolarization sag, stronger burst, and rebound firing. A7 cells have a transcriptomics signature that looks like Lamp5 GABAergic interneuron.") AnnotationAssertion(rdfs:label obo:CL_4023010 "alpha7 GABAergic cortical interneuron (Mmus)") -SubClassOf(obo:CL_4023010 obo:CL_0000099) -SubClassOf(obo:CL_4023010 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000956)) +SubClassOf(obo:CL_4023010 obo:BFO_0000002) +SubClassOf(obo:CL_4023010 obo:CL_0010011) SubClassOf(obo:CL_4023010 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_10090)) -SubClassOf(obo:CL_4023010 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061534)) SubClassOf(obo:CL_4023010 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000005460)) # Class: obo:CL_4023011 (lamp5 GABAergic cortical interneuron) AnnotationAssertion(obo:IAO_0000028 obo:CL_4023011 "Lamp5 cortical interneuron") -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:30382198") obo:IAO_0000115 obo:CL_4023011 "A GABAergic neuron located in the cerebral cortex that expresses Lamp5") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:30382198") Annotation(oboInOwl:hasDbXref "PMID:37824655") obo:IAO_0000115 obo:CL_4023011 "A GABAergic neuron located in the cerebral cortex that expresses Lamp5") AnnotationAssertion(terms:contributor obo:CL_4023011 ) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_4023011 "ILX:0770149") AnnotationAssertion(oboInOwl:inSubset obo:CL_4023011 cl:BDS_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_4023011 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_4023011 "lamp5 GABAergic cortical interneuron") EquivalentClasses(obo:CL_4023011 ObjectIntersectionOf(obo:CL_0000099 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000956) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061534) ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000032148))) +SubClassOf(obo:CL_4023011 obo:BFO_0000002) +SubClassOf(obo:CL_4023011 obo:CL_0010011) +SubClassOf(obo:CL_4023011 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000032148)) # Class: obo:CL_4023012 (near-projecting glutamatergic cortical neuron) @@ -31768,6 +35787,9 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_4023012 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_4023012 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_4023012 "near-projecting glutamatergic cortical neuron") EquivalentClasses(obo:CL_4023012 ObjectIntersectionOf(obo:CL_0000679 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070030) ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000956))) +SubClassOf(obo:CL_4023012 obo:CL_0000679) +SubClassOf(obo:CL_4023012 obo:CL_0010012) +SubClassOf(obo:CL_4023012 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070030)) # Class: obo:CL_4023013 (corticothalamic-projecting glutamatergic cortical neuron) @@ -31781,6 +35803,9 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_4023013 cl:cellxgene_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_4023013 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_4023013 "corticothalamic-projecting glutamatergic cortical neuron") EquivalentClasses(obo:CL_4023013 ObjectIntersectionOf(obo:CL_0000679 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070029) ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000956))) +SubClassOf(obo:CL_4023013 obo:CL_0000679) +SubClassOf(obo:CL_4023013 obo:CL_0010012) +SubClassOf(obo:CL_4023013 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070029)) # Class: obo:CL_4023014 (L5 vip GABAergic interneuron (Mmus)) @@ -31790,55 +35815,66 @@ AnnotationAssertion(terms:contributor obo:CL_4023014 ) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_4023015 "ILX:0770150") AnnotationAssertion(oboInOwl:inSubset obo:CL_4023015 cl:BDS_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_4023015 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_4023015 "sncg GABAergic cortical interneuron") EquivalentClasses(obo:CL_4023015 ObjectIntersectionOf(obo:CL_0000099 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000956) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061534) ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000015325))) +SubClassOf(obo:CL_4023015 obo:BFO_0000002) +SubClassOf(obo:CL_4023015 obo:CL_0010011) +SubClassOf(obo:CL_4023015 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000015325)) # Class: obo:CL_4023016 (vip GABAergic cortical interneuron) AnnotationAssertion(obo:IAO_0000028 obo:CL_4023016 "vip cortical interneuron") -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:33186530") obo:IAO_0000115 obo:CL_4023016 "A GABAergic neuron located in the cerebral cortex that expresses vasoactive intestinal polypeptide") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:33186530") Annotation(oboInOwl:hasDbXref "PMID:37824655") obo:IAO_0000115 obo:CL_4023016 "A GABAergic neuron located in the cerebral cortex that expresses vasoactive intestinal polypeptide") AnnotationAssertion(terms:contributor obo:CL_4023016 ) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_4023016 "ILX:0770151") AnnotationAssertion(oboInOwl:inSubset obo:CL_4023016 cl:BDS_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_4023016 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_4023016 "vip GABAergic cortical interneuron") EquivalentClasses(obo:CL_4023016 ObjectIntersectionOf(obo:CL_0000099 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000956) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061534) ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000017299))) +SubClassOf(obo:CL_4023016 obo:BFO_0000002) +SubClassOf(obo:CL_4023016 obo:CL_0010011) +SubClassOf(obo:CL_4023016 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000017299)) # Class: obo:CL_4023017 (sst GABAergic cortical interneuron) AnnotationAssertion(obo:IAO_0000028 obo:CL_4023017 "sst cortical interneuron") -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:27477017") obo:IAO_0000115 obo:CL_4023017 "A GABAergic neuron located in the cerebral cortex that expresses somatostatin (sst)") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:27477017") Annotation(oboInOwl:hasDbXref "PMID:37824655") obo:IAO_0000115 obo:CL_4023017 "A GABAergic neuron located in the cerebral cortex that expresses somatostatin (sst)") AnnotationAssertion(terms:contributor obo:CL_4023017 ) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_4023017 "ILX:0770152") AnnotationAssertion(oboInOwl:inSubset obo:CL_4023017 cl:BDS_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_4023017 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_4023017 "sst GABAergic cortical interneuron") EquivalentClasses(obo:CL_4023017 ObjectIntersectionOf(obo:CL_0000099 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000956) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061534) ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000015665))) +SubClassOf(obo:CL_4023017 obo:BFO_0000002) +SubClassOf(obo:CL_4023017 obo:CL_0010011) +SubClassOf(obo:CL_4023017 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000015665)) # Class: obo:CL_4023018 (pvalb GABAergic cortical interneuron) AnnotationAssertion(obo:IAO_0000028 obo:CL_4023018 "pvalb cortical interneuron") -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:27477017") obo:IAO_0000115 obo:CL_4023018 "A GABAergic interneuron located in the cerebral cortex that expresses Parvalbumin.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:27477017") Annotation(oboInOwl:hasDbXref "PMID:37824655") obo:IAO_0000115 obo:CL_4023018 "A GABAergic interneuron located in the cerebral cortex that expresses Parvalbumin.") AnnotationAssertion(terms:contributor obo:CL_4023018 ) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_4023018 "ILX:0770154") AnnotationAssertion(oboInOwl:inSubset obo:CL_4023018 cl:BDS_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_4023018 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_4023018 "pvalb GABAergic cortical interneuron") EquivalentClasses(obo:CL_4023018 ObjectIntersectionOf(obo:CL_0000099 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000956) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061534) ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000013502))) +SubClassOf(obo:CL_4023018 obo:BFO_0000002) +SubClassOf(obo:CL_4023018 obo:CL_0010011) +SubClassOf(obo:CL_4023018 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000013502)) # Class: obo:CL_4023019 (L5/6 cck, vip GABAergic interneuron (Mmus)) @@ -31848,6 +35884,9 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023019 "L5/6 CCK Vip (Mus m AnnotationAssertion(oboInOwl:inSubset obo:CL_4023019 cl:BDS_subset) AnnotationAssertion(rdfs:label obo:CL_4023019 "L5/6 cck, vip GABAergic interneuron (Mmus)") EquivalentClasses(obo:CL_4023019 ObjectIntersectionOf(obo:CL_4023071 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_P32648))) +SubClassOf(obo:CL_4023019 obo:CL_4023016) +SubClassOf(obo:CL_4023019 obo:CL_4023071) +SubClassOf(obo:CL_4023019 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_P32648)) # Class: obo:CL_4023020 (dynamic gamma motor neuron) @@ -31872,10 +35911,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:30413647") obo:IAO_00001 AnnotationAssertion(terms:contributor obo:CL_4023022 ) AnnotationAssertion(oboInOwl:inSubset obo:CL_4023022 cl:BDS_subset) AnnotationAssertion(rdfs:label obo:CL_4023022 "canopy lamp5 GABAergic cortical interneuron (Mmus)") -SubClassOf(obo:CL_4023022 obo:CL_0000099) -SubClassOf(obo:CL_4023022 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000956)) +SubClassOf(obo:CL_4023022 obo:CL_4023011) SubClassOf(obo:CL_4023022 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_10090)) -SubClassOf(obo:CL_4023022 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061534)) SubClassOf(obo:CL_4023022 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_Q9D387)) # Class: obo:CL_4023023 (L5,6 neurogliaform lamp5 GABAergic interneuron (Mmus)) @@ -31886,11 +35923,9 @@ AnnotationAssertion(terms:contributor obo:CL_4023023 ) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_4023038 "ILX:0770163") AnnotationAssertion(oboInOwl:inSubset obo:CL_4023038 cl:BDS_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_4023038 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_4023038 "L6b glutamatergic cortical neuron") EquivalentClasses(obo:CL_4023038 ObjectIntersectionOf(obo:CL_0000679 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_8440003))) +SubClassOf(obo:CL_4023038 obo:CL_0000679) +SubClassOf(obo:CL_4023038 obo:CL_0010012) +SubClassOf(obo:CL_4023038 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_8440003)) # Class: obo:CL_4023039 (amygdala excitatory neuron) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_4023039 "Any neuron that has its soma located in some amygdala and is capable of some glutamate secretion, neurotransmission.") AnnotationAssertion(obo:RO_0002175 obo:CL_4023039 obo:NCBITaxon_9606) AnnotationAssertion(terms:contributor obo:CL_4023039 ) AnnotationAssertion(oboInOwl:inSubset obo:CL_4023039 core:human_reference_atlas) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOI:10.1101/2022.10.12.511898") rdfs:comment obo:CL_4023039 "An excitatory neuron that is located in the amygdala.") AnnotationAssertion(rdfs:label obo:CL_4023039 "amygdala excitatory neuron") EquivalentClasses(obo:CL_4023039 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001876) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061535))) +SubClassOf(obo:CL_4023039 obo:CL_0000679) +SubClassOf(obo:CL_4023039 obo:CL_2000029) +SubClassOf(obo:CL_4023039 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001876)) # Class: obo:CL_4023040 (L2/3-6 intratelencephalic projecting glutamatergic neuron) AnnotationAssertion(obo:IAO_0000028 obo:CL_4023040 "L2/3-6 IT glut") -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOI:10.1101/2020.10.19.343129") obo:IAO_0000115 obo:CL_4023040 "A intratelencephalic-projecting glutamatergic neuron with a soma found in cortical layers L2/3-6") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34616075") Annotation(oboInOwl:hasDbXref "https://cellxgene.cziscience.com/e/c3aa4f95-7a18-4a7d-8dd8-ca324d714363.cxg/") obo:IAO_0000115 obo:CL_4023040 "An intratelencephalic-projecting glutamatergic neuron with a soma found in cortical layers L2/3-6.") AnnotationAssertion(terms:contributor obo:CL_4023040 ) AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023040 "L2/3-6 IT projecting neuron") AnnotationAssertion(oboInOwl:inSubset obo:CL_4023040 cl:BDS_subset) @@ -32091,10 +36125,10 @@ SubClassOf(obo:CL_4023040 obo:CL_4023008) # Class: obo:CL_4023041 (L5 extratelencephalic projecting glutamatergic cortical neuron) AnnotationAssertion(obo:IAO_0000028 obo:CL_4023041 "L5 ET glut") -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOI:10.1101/2020.10.19.343129") obo:IAO_0000115 obo:CL_4023041 "A glutamatergic neuron, with a soma found in the deeper portion of L5, that has long-range axonal projections including deep subcortical targets outside of the telencephalon and, in some cases, the spinal cord. While the L5 ET neuron projections are not limited to ET targets, they are clearly differentiated from the neuron subclasses whose projections are constrained to intratelencephalic (IT) targets. L5 ET neurons are generally the largest excitatory cortical neurons, typically having a thick apical dendrite with a prominent dendritic tuft in layer 1 and displaying burst-firing physiological characteristics.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34616075") Annotation(oboInOwl:hasDbXref "PMID:37824655") obo:IAO_0000115 obo:CL_4023041 "A glutamatergic neuron, with a soma found in the deeper portion of L5, that has long-range axonal projections including deep subcortical targets outside of the telencephalon and, in some cases, the spinal cord. While the L5 ET neuron projections are not limited to ET targets, they are clearly differentiated from the neuron subclasses whose projections are constrained to intratelencephalic (IT) targets. L5 ET neurons are generally the largest excitatory cortical neurons, typically having a thick apical dendrite with a prominent dendritic tuft in layer 1 and displaying burst-firing physiological characteristics.") AnnotationAssertion(terms:contributor obo:CL_4023041 ) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOI:10.1016/j.neuron.2005.08.030") oboInOwl:hasBroadSynonym obo:CL_4023041 "subcerebral projection (SCPN) neuron") -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOI:10.1016/j.cell.2019.09.023") Annotation(rdfs:comment "pyramidal tract-like is used because, unlike pyramidal tract neurons in the motor cortex, neurons in the structures like the auditory cortex do not project to the spinal cord.") oboInOwl:hasExactSynonym obo:CL_4023041 "Pyramidal tract-like (PT-l)") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:31626774") Annotation(rdfs:comment "pyramidal tract-like is used because, unlike pyramidal tract neurons in the motor cortex, neurons in the structures like the auditory cortex do not project to the spinal cord.") oboInOwl:hasExactSynonym obo:CL_4023041 "Pyramidal tract-like (PT-l)") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOI:10.3389/fncel.2011.00001") oboInOwl:hasExactSynonym obo:CL_4023041 "burst-firing layer 5 neuron") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOI:10.3389/fncel.2015.00233") oboInOwl:hasExactSynonym obo:CL_4023041 "thick-tufted layer 5 (TTL5) pyramidal neuron") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOI:10.1038/nrn3469") oboInOwl:hasNarrowSynonym obo:CL_4023041 "pyramidal tract (PT) neuron") @@ -32103,24 +36137,28 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_4023041 cl:BDS_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_4023041 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_4023041 "L5 extratelencephalic projecting glutamatergic cortical neuron") EquivalentClasses(obo:CL_4023041 ObjectIntersectionOf(obo:CL_4023009 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0005394))) -SubClassOf(obo:CL_4023041 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070015)) +SubClassOf(obo:CL_4023041 obo:CL_4023009) +SubClassOf(obo:CL_4023041 obo:CL_4023111) +SubClassOf(obo:CL_4023041 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0005394)) # Class: obo:CL_4023042 (L6 corticothalamic-projecting glutamatergic cortical neuron) AnnotationAssertion(obo:IAO_0000028 obo:CL_4023042 "L6 CT glut") -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOI:10.1101/2020.10.19.343129") obo:IAO_0000115 obo:CL_4023042 "A corticothalamic-projecting neuron with a soma found in cortical layer 6.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34616075") Annotation(oboInOwl:hasDbXref "PMID:37824655") obo:IAO_0000115 obo:CL_4023042 "A corticothalamic-projecting neuron with a soma found in cortical layer 6.") AnnotationAssertion(terms:contributor obo:CL_4023042 ) -AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023042 "L6 CT") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:28625486") Annotation(oboInOwl:hasDbXref "PMID:34616075") oboInOwl:hasExactSynonym obo:CL_4023042 "L6 CT") AnnotationAssertion(oboInOwl:inSubset obo:CL_4023042 cl:BDS_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_4023042 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_4023042 "L6 corticothalamic-projecting glutamatergic cortical neuron") EquivalentClasses(obo:CL_4023042 ObjectIntersectionOf(obo:CL_4023013 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0005395))) +SubClassOf(obo:CL_4023042 obo:CL_4023013) +SubClassOf(obo:CL_4023042 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0005395)) SubClassOf(obo:CL_4023042 ObjectSomeValuesFrom(obo:RO_0013001 obo:UBERON_0010225)) # Class: obo:CL_4023043 (L5/6 near-projecting glutamatergic neuron of the primary motor cortex) AnnotationAssertion(obo:IAO_0000028 obo:CL_4023043 "L5/6 NP glut MOp") -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOI:10.1101/2020.10.19.343129") Annotation(oboInOwl:hasDbXref "PMID:31209381") obo:IAO_0000115 obo:CL_4023043 "A near-projecting glutamatergic neuron with a soma found in layer 5/6 of the primary motor cortex.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:31209381") Annotation(oboInOwl:hasDbXref "PMID:34616075") obo:IAO_0000115 obo:CL_4023043 "A near-projecting glutamatergic neuron with a soma found in layer 5/6 of the primary motor cortex.") AnnotationAssertion(terms:contributor obo:CL_4023043 ) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_4023043 "ILX:0770161") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023043 "L5/6 NP M1") @@ -32129,6 +36167,8 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_4023043 cl:BDS_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_4023043 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_4023043 "L5/6 near-projecting glutamatergic neuron of the primary motor cortex") EquivalentClasses(obo:CL_4023043 ObjectIntersectionOf(obo:CL_4030067 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001384))) +SubClassOf(obo:CL_4023043 obo:CL_4030067) +SubClassOf(obo:CL_4023043 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001384)) # Class: obo:CL_4023044 (non-medulla, extratelencephalic-projecting glutamatergic neuron of the primary motor cortex) @@ -32139,8 +36179,8 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023044 "non-MY ET M1") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023044 "non-MY ET MOp (Mus)") AnnotationAssertion(oboInOwl:inSubset obo:CL_4023044 cl:BDS_subset) AnnotationAssertion(rdfs:label obo:CL_4023044 "non-medulla, extratelencephalic-projecting glutamatergic neuron of the primary motor cortex") +SubClassOf(obo:CL_4023044 obo:CL_2000049) SubClassOf(obo:CL_4023044 obo:CL_4023041) -SubClassOf(obo:CL_4023044 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001384)) # Class: obo:CL_4023045 (medulla-projecting glutamatergic neuron of the primary motor cortex) @@ -32152,9 +36192,9 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023045 "MY ET MOp") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023045 "medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex") AnnotationAssertion(oboInOwl:inSubset obo:CL_4023045 cl:BDS_subset) AnnotationAssertion(rdfs:label obo:CL_4023045 "medulla-projecting glutamatergic neuron of the primary motor cortex") +SubClassOf(obo:CL_4023045 obo:CL_2000049) SubClassOf(obo:CL_4023045 obo:CL_4023041) SubClassOf(obo:CL_4023045 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070031)) -SubClassOf(obo:CL_4023045 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001384)) SubClassOf(obo:CL_4023045 ObjectSomeValuesFrom(obo:RO_0013001 obo:UBERON_0001896)) # Class: obo:CL_4023046 (L6b glutamatergic neuron of the primary motor cortex) @@ -32171,14 +36211,16 @@ SubClassOf(obo:CL_4023046 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001384 # Class: obo:CL_4023047 (L2/3 intratelencephalic projecting glutamatergic neuron of the primary motor cortex) AnnotationAssertion(obo:IAO_0000028 obo:CL_4023047 "L2/3 IT glut MOp") -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOI:10.1101/2020.10.19.343129") obo:IAO_0000115 obo:CL_4023047 "An intratelencephalic-projecting glutamatergic neuron with a soma found in cortical layer 2/3 of the primary motor cortex.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34616075") obo:IAO_0000115 obo:CL_4023047 "An intratelencephalic-projecting glutamatergic neuron with a soma found in cortical layer 2/3 of the primary motor cortex.") AnnotationAssertion(terms:contributor obo:CL_4023047 ) -AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023047 "L2/3 IT M1") -AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023047 "L2/3 IT MOp") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34616075") oboInOwl:hasExactSynonym obo:CL_4023047 "L2/3 IT M1") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34616075") oboInOwl:hasExactSynonym obo:CL_4023047 "L2/3 IT MOp") AnnotationAssertion(oboInOwl:inSubset obo:CL_4023047 cl:BDS_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_4023047 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_4023047 "L2/3 intratelencephalic projecting glutamatergic neuron of the primary motor cortex") EquivalentClasses(obo:CL_4023047 ObjectIntersectionOf(obo:CL_4030059 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001384))) +SubClassOf(obo:CL_4023047 obo:CL_4030059) +SubClassOf(obo:CL_4023047 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001384)) # Class: obo:CL_4023048 (L4/5 intratelencephalic projecting glutamatergic neuron of the primary motor cortex) @@ -32192,6 +36234,8 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_4023048 cl:BDS_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_4023048 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_4023048 "L4/5 intratelencephalic projecting glutamatergic neuron of the primary motor cortex") EquivalentClasses(obo:CL_4023048 ObjectIntersectionOf(obo:CL_4030062 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001384))) +SubClassOf(obo:CL_4023048 obo:CL_4030062) +SubClassOf(obo:CL_4023048 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001384)) # Class: obo:CL_4023049 (L5 intratelencephalic projecting glutamatergic neuron of the primary motor cortex) @@ -32204,11 +36248,13 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023049 "L5 IT MOp") AnnotationAssertion(oboInOwl:inSubset obo:CL_4023049 cl:BDS_subset) AnnotationAssertion(rdfs:label obo:CL_4023049 "L5 intratelencephalic projecting glutamatergic neuron of the primary motor cortex") EquivalentClasses(obo:CL_4023049 ObjectIntersectionOf(obo:CL_4030064 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001384))) +SubClassOf(obo:CL_4023049 obo:CL_4030064) +SubClassOf(obo:CL_4023049 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001384)) # Class: obo:CL_4023050 (L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex) AnnotationAssertion(obo:IAO_0000028 obo:CL_4023050 "L6 IT glut MOp") -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:9236245") obo:IAO_0000115 obo:CL_4023050 "An intratelencephalic-projecting glutamatergic neuron with a soma found in L6 of the primary motor cortex. These cells are short untufted pyramidal cells, which could be stellate or inverted.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:33184512") Annotation(oboInOwl:hasDbXref "PMID:34616063") Annotation(oboInOwl:hasDbXref "PMID:34616075") Annotation(oboInOwl:hasDbXref "PMID:9236245") obo:IAO_0000115 obo:CL_4023050 "An intratelencephalic-projecting glutamatergic neuron with a soma found in L6 of the primary motor cortex. These cells are short untufted pyramidal cells, which could be stellate or inverted.") AnnotationAssertion(terms:contributor obo:CL_4023050 ) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_4023050 "ILX:0770158") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023050 "L6 IT M1") @@ -32217,19 +36263,20 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_4023050 cl:BDS_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_4023050 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_4023050 "L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex") EquivalentClasses(obo:CL_4023050 ObjectIntersectionOf(obo:CL_4030065 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001384))) +SubClassOf(obo:CL_4023050 obo:CL_2000049) +SubClassOf(obo:CL_4023050 obo:CL_4030065) SubClassOf(obo:CL_4023050 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070019)) # Class: obo:CL_4023051 (vascular leptomeningeal cell) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:27284195") Annotation(oboInOwl:hasDbXref "PMID:29443965") Annotation(oboInOwl:hasDbXref "PMID:30096314") obo:IAO_0000115 obo:CL_4023051 "A type of mesothelial fibroblast that is derived from the neural crest, is localized on blood vessels, and is a key component of the pia and arachnoid membranes surrounding the brain.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:27284195") Annotation(oboInOwl:hasDbXref "PMID:29443965") Annotation(oboInOwl:hasDbXref "PMID:30096314") Annotation(oboInOwl:hasDbXref "PMID:37824655") obo:IAO_0000115 obo:CL_4023051 "A type of mesothelial fibroblast that is derived from the neural crest, is localized on blood vessels, and is a key component of the pia and arachnoid membranes surrounding the brain.") AnnotationAssertion(terms:contributor obo:CL_4023051 ) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_4023051 "ILX:0770143") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023051 "VLMC") AnnotationAssertion(oboInOwl:inSubset obo:CL_4023051 cl:BDS_subset) AnnotationAssertion(oboInOwl:inSubset obo:CL_4023051 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_4023051 "vascular leptomeningeal cell") -SubClassOf(obo:CL_4023051 obo:CL_4023054) -SubClassOf(obo:CL_4023051 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000391)) +SubClassOf(obo:CL_4023051 obo:CL_4023058) SubClassOf(obo:CL_4023051 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0011012)) # Class: obo:CL_4023052 (Betz upper motor neuron) @@ -32270,9 +36317,9 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023055 "CT VAL/VM MOp") AnnotationAssertion(oboInOwl:inSubset obo:CL_4023055 cl:BDS_subset) AnnotationAssertion(rdfs:comment obo:CL_4023055 "The assertion of this cell type under L6 CT is due to the ambiguity of lower L5 and L6.") AnnotationAssertion(rdfs:label obo:CL_4023055 "corticothalamic VAL/VM projecting glutamatergic neuron of the primary motor cortex") +SubClassOf(obo:CL_4023055 obo:CL_2000049) SubClassOf(obo:CL_4023055 obo:CL_4023042) SubClassOf(obo:CL_4023055 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070019)) -SubClassOf(obo:CL_4023055 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001384)) # Class: obo:CL_4023056 (vascular leptomeningeal cell (Mmus)) @@ -32290,12 +36337,17 @@ SubClassOf(Annotation(oboInOwl:hasDbXref "PMID:30096314") obo:CL_4023056 ObjectS # Class: obo:CL_4023057 (cerebellar inhibitory GABAergic interneuron) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:Autogenerated") obo:IAO_0000115 obo:CL_4023057 "Any GABAergic interneuron that has its soma located in some cerebellar cortex.") AnnotationAssertion(obo:RO_0002175 obo:CL_4023057 obo:NCBITaxon_9606) AnnotationAssertion(terms:contributor obo:CL_4023057 ) AnnotationAssertion(oboInOwl:inSubset obo:CL_4023057 core:human_reference_atlas) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOI:10.1101/2022.10.12.511898") rdfs:comment obo:CL_4023057 "A GABAergic interneuron whose soma is located in the cerebellar cortex.") AnnotationAssertion(rdfs:label obo:CL_4023057 "cerebellar inhibitory GABAergic interneuron") EquivalentClasses(obo:CL_4023057 ObjectIntersectionOf(obo:CL_0011005 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002129))) +SubClassOf(obo:CL_4023057 obo:CL_0000402) +SubClassOf(obo:CL_4023057 obo:CL_0011005) +SubClassOf(obo:CL_4023057 obo:CL_1001611) +SubClassOf(obo:CL_4023057 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002129)) # Class: obo:CL_4023058 (mesothelial fibroblast of the leptomeninx) @@ -32303,6 +36355,9 @@ AnnotationAssertion(obo:IAO_0000115 obo:CL_4023058 "A mesothelial fibroblast fou AnnotationAssertion(terms:contributor obo:CL_4023058 ) AnnotationAssertion(rdfs:label obo:CL_4023058 "mesothelial fibroblast of the leptomeninx") EquivalentClasses(obo:CL_4023058 ObjectIntersectionOf(obo:CL_4023054 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000391))) +SubClassOf(obo:CL_4023058 obo:CL_0002319) +SubClassOf(obo:CL_4023058 obo:CL_4023054) +SubClassOf(obo:CL_4023058 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000391)) # Class: obo:CL_4023059 (differentiation-committed oligodendrocyte precursor) @@ -32326,7 +36381,7 @@ AnnotationAssertion(obo:RO_0002175 obo:CL_4023060 obo:NCBITaxon_9606) AnnotationAssertion(terms:contributor obo:CL_4023060 ) AnnotationAssertion(oboInOwl:inSubset obo:CL_4023060 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_4023060 "hippocampal CA1-3 neuron") -SubClassOf(obo:CL_4023060 obo:CL_0000540) +SubClassOf(obo:CL_4023060 obo:CL_0002608) SubClassOf(obo:CL_4023060 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001954)) # Class: obo:CL_4023061 (hippocampal CA4 neuron) @@ -32346,6 +36401,8 @@ AnnotationAssertion(terms:contributor obo:CL_4023062 ) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:27199673") Annotation(oboInOwl:hasDbXref "PMID:33862423") oboInOwl:hasBroadSynonym obo:CL_4023083 "axo-axonic cell") AnnotationAssertion(Annotation(obo:IAO_0000116 "Interlex cross reference refers specifically to Markram 2015 rat chandelier cell.") oboInOwl:hasDbXref obo:CL_4023083 "ILX:0777213") @@ -32556,6 +36641,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:15378039") Annotation(ob AnnotationAssertion(oboInOwl:inSubset obo:CL_4023083 cl:BDS_subset) AnnotationAssertion(rdfs:label obo:CL_4023083 "chandelier cell") EquivalentClasses(obo:CL_4023083 ObjectIntersectionOf(obo:CL_0011005 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070011))) +SubClassOf(obo:CL_4023083 obo:CL_0011005) +SubClassOf(obo:CL_4023083 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070011)) # Class: obo:CL_4023086 (T Martinotti neuron) @@ -32565,6 +36652,8 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023086 "T-shaped Martinotti AnnotationAssertion(oboInOwl:inSubset obo:CL_4023086 cl:BDS_subset) AnnotationAssertion(rdfs:label obo:CL_4023086 "T Martinotti neuron") EquivalentClasses(obo:CL_4023086 ObjectIntersectionOf(obo:CL_0000099 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070008) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061534))) +SubClassOf(obo:CL_4023086 obo:CL_4023076) +SubClassOf(obo:CL_4023086 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070008)) # Class: obo:CL_4023087 (fan Martinotti neuron) @@ -32574,6 +36663,8 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023087 "fanning-out Martino AnnotationAssertion(oboInOwl:inSubset obo:CL_4023087 cl:BDS_subset) AnnotationAssertion(rdfs:label obo:CL_4023087 "fan Martinotti neuron") EquivalentClasses(obo:CL_4023087 ObjectIntersectionOf(obo:CL_0000099 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070009) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061534))) +SubClassOf(obo:CL_4023087 obo:CL_4023076) +SubClassOf(obo:CL_4023087 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070009)) # Class: obo:CL_4023088 (large basket cell) @@ -32582,6 +36673,8 @@ AnnotationAssertion(terms:contributor obo:CL_4023088 ) AnnotationAssertion(rdfs:label obo:CL_4023108 "oxytocin-secreting magnocellular cell") EquivalentClasses(obo:CL_4023108 ObjectIntersectionOf(obo:CL_0011003 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0036162))) +SubClassOf(obo:CL_4023108 obo:CL_0011003) +SubClassOf(obo:CL_4023108 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0036162)) # Class: obo:CL_4023109 (vasopressin-secreting magnocellular cell) @@ -32759,6 +36873,9 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "WikipediaVersioned:Magnocellu AnnotationAssertion(terms:contributor obo:CL_4023109 ) AnnotationAssertion(rdfs:label obo:CL_4023109 "vasopressin-secreting magnocellular cell") EquivalentClasses(obo:CL_4023109 ObjectIntersectionOf(obo:CL_0011003 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030103))) +SubClassOf(obo:CL_4023109 obo:CL_0000167) +SubClassOf(obo:CL_4023109 obo:CL_0011003) +SubClassOf(obo:CL_4023109 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030103)) # Class: obo:CL_4023110 (amygdala pyramidal neuron) @@ -32766,6 +36883,9 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:1375860") obo:IAO_000011 AnnotationAssertion(terms:contributor obo:CL_4023110 ) AnnotationAssertion(rdfs:label obo:CL_4023110 "amygdala pyramidal neuron") EquivalentClasses(obo:CL_4023110 ObjectIntersectionOf(obo:CL_0000598 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001876))) +SubClassOf(obo:CL_4023110 obo:CL_0000598) +SubClassOf(obo:CL_4023110 obo:CL_2000029) +SubClassOf(obo:CL_4023110 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001876)) # Class: obo:CL_4023111 (cerebral cortex pyramidal neuron) @@ -32773,6 +36893,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:30715238") obo:IAO_00001 AnnotationAssertion(terms:contributor obo:CL_4023111 ) AnnotationAssertion(rdfs:label obo:CL_4023111 "cerebral cortex pyramidal neuron") EquivalentClasses(obo:CL_4023111 ObjectIntersectionOf(obo:CL_0000598 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000956))) +SubClassOf(obo:CL_4023111 obo:CL_0000598) +SubClassOf(obo:CL_4023111 obo:CL_0010012) # Class: obo:CL_4023112 (vestibular afferent neuron) @@ -32808,7 +36930,10 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023115 "type I spiral gangl AnnotationAssertion(Annotation(oboInOwl:hasDbXref "WikipediaVersioned:Spiral_ganglion&oldid=994446209") rdfs:comment obo:CL_4023115 "Type 1 spiral ganglion neurons comprise the vast majority of spiral ganglion cells.") AnnotationAssertion(rdfs:label obo:CL_4023115 "type 1 spiral ganglion neuron") EquivalentClasses(obo:CL_4023115 ObjectIntersectionOf(obo:CL_0011113 ObjectSomeValuesFrom(obo:RO_0002134 obo:CL_0000589))) +SubClassOf(obo:CL_4023115 obo:CL_0011113) +SubClassOf(obo:CL_4023115 obo:UBERON_0000122) SubClassOf(obo:CL_4023115 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070006)) +SubClassOf(obo:CL_4023115 ObjectSomeValuesFrom(obo:RO_0002134 obo:CL_0000589)) # Class: obo:CL_4023116 (type 2 spiral ganglion neuron) @@ -32818,7 +36943,10 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023116 "type II spiral gang AnnotationAssertion(Annotation(oboInOwl:hasDbXref "WikipediaVersioned:Spiral_ganglion&oldid=994446209") rdfs:comment obo:CL_4023116 "Outer hair cells form reciprocal synapses onto type 2 spiral ganglion cells, suggesting that the type 2 cells have both afferent and efferent roles.") AnnotationAssertion(rdfs:label obo:CL_4023116 "type 2 spiral ganglion neuron") EquivalentClasses(obo:CL_4023116 ObjectIntersectionOf(obo:CL_0011113 ObjectSomeValuesFrom(obo:RO_0002134 obo:CL_0000601))) +SubClassOf(obo:CL_4023116 obo:CL_0011113) +SubClassOf(obo:CL_4023116 obo:UBERON_0000122) SubClassOf(obo:CL_4023116 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070025)) +SubClassOf(obo:CL_4023116 ObjectSomeValuesFrom(obo:RO_0002134 obo:CL_0000601)) # Class: obo:CL_4023118 (L5/6 non-Martinotti sst GABAergic interneuron (Mmus)) @@ -32830,10 +36958,9 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023118 "L5/6 non-Martinotti AnnotationAssertion(oboInOwl:inSubset obo:CL_4023118 cl:BDS_subset) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:27477017") rdfs:comment obo:CL_4023118 "L5/6 non-Martinotti SST cells have strongly facilitating excitatory inputs and moderately depressing outputs. They have faster action potential than Martinotti morphology SST cells and slightly slower than PV basket cells.") AnnotationAssertion(rdfs:label obo:CL_4023118 "L5/6 non-Martinotti sst GABAergic interneuron (Mmus)") -SubClassOf(obo:CL_4023118 obo:CL_0000099) +SubClassOf(obo:CL_4023118 obo:CL_4023017) SubClassOf(obo:CL_4023118 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_8440002)) SubClassOf(obo:CL_4023118 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_10090)) -SubClassOf(obo:CL_4023118 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061534)) SubClassOf(obo:CL_4023118 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_P60041)) # Class: obo:CL_4023119 (displaced amacrine cell) @@ -32855,20 +36982,21 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_4023120 "FMA:62364") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023120 "cochlear hair cell") AnnotationAssertion(rdfs:label obo:CL_4023120 "cochlea auditory hair cell") EquivalentClasses(obo:CL_4023120 ObjectIntersectionOf(obo:CL_0000202 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002227))) +SubClassOf(obo:CL_4023120 obo:BFO_0000002) +SubClassOf(obo:CL_4023120 obo:CL_0000202) +SubClassOf(obo:CL_4023120 obo:CL_0002374) +SubClassOf(obo:CL_4023120 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002227)) # Class: obo:CL_4023121 (sst chodl GABAergic cortical interneuron) AnnotationAssertion(obo:IAO_0000028 obo:CL_4023121 "sst chodl cortical interneuron") -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:15845086") Annotation(oboInOwl:hasDbXref "PMID:31209381") Annotation(oboInOwl:hasDbXref "PMID:33372656") obo:IAO_0000115 obo:CL_4023121 "A sst GABAergic cortical interneuron that also expresses Chodl. These neurons are rare and correspond to the only known cortical interneurons with long-range projection.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:15845086") Annotation(oboInOwl:hasDbXref "PMID:31209381") Annotation(oboInOwl:hasDbXref "PMID:33372656") Annotation(oboInOwl:hasDbXref "PMID:37824655") obo:IAO_0000115 obo:CL_4023121 "A sst GABAergic cortical interneuron that also expresses Chodl. These neurons are rare and correspond to the only known cortical interneurons with long-range projection.") AnnotationAssertion(terms:contributor obo:CL_4023121 ) AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_4023121 "long-range GABAergic interneuron") AnnotationAssertion(oboInOwl:inSubset obo:CL_4023121 cl:cellxgene_subset) AnnotationAssertion(rdfs:label obo:CL_4023121 "sst chodl GABAergic cortical interneuron") -SubClassOf(obo:CL_4023121 obo:CL_0000099) -SubClassOf(obo:CL_4023121 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000956)) -SubClassOf(obo:CL_4023121 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061534)) +SubClassOf(obo:CL_4023121 obo:CL_4023017) SubClassOf(obo:CL_4023121 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000005444)) -SubClassOf(obo:CL_4023121 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000015665)) # Class: obo:CL_4023122 (oxytocin receptor sst GABAergic cortical interneuron) @@ -32878,11 +37006,8 @@ AnnotationAssertion(terms:contributor obo:CL_4023122 ) AnnotationAssertion(rdfs:label obo:CL_4023123 "hypothalamus kisspeptin neuron") EquivalentClasses(obo:CL_4023123 ObjectIntersectionOf(obo:CL_4023130 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001898))) +SubClassOf(obo:CL_4023123 obo:CL_2000029) +SubClassOf(obo:CL_4023123 obo:CL_4023130) +SubClassOf(obo:CL_4023123 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001898)) # Class: obo:CL_4023124 (dentate gyrus kisspeptin neuron) @@ -32899,6 +37027,8 @@ AnnotationAssertion(terms:contributor obo:CL_4023124 ) AnnotationAssertion(rdfs:label obo:CL_4023124 "dentate gyrus kisspeptin neuron") EquivalentClasses(obo:CL_4023124 ObjectIntersectionOf(obo:CL_4023130 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001885))) +SubClassOf(obo:CL_4023124 obo:CL_4023062) +SubClassOf(obo:CL_4023124 obo:CL_4023130) # Class: obo:CL_4023125 (KNDy neuron) @@ -32909,6 +37039,9 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023125 "kisspeptin, neuroki AnnotationAssertion(Annotation(oboInOwl:hasDbXref "WikipediaVersioned:KNDy_neuron&oldid=964682278") rdfs:comment obo:CL_4023125 "KNDy neurons are involved in the negative feedback of gonadotropin-releasing hormone release in the hypothalamic–pituitary–gonadal axis. Sex steroids released from the gonads act on KNDy neurons as inhibitors of kisspeptin release. This inhibition provides negative feedback control on the hypothalamic–pituitary–gonadal axis. Other roles of KNDy neurons include influences on prolactin production; puberty; stress' effects on reproduction; and the control of thermoregulation.") AnnotationAssertion(rdfs:label obo:CL_4023125 "KNDy neuron") EquivalentClasses(obo:CL_4023125 ObjectIntersectionOf(obo:CL_4023123 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000012526) ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000016004))) +SubClassOf(obo:CL_4023125 obo:CL_4023123) +SubClassOf(obo:CL_4023125 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000012526)) +SubClassOf(obo:CL_4023125 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000016004)) # Class: obo:CL_4023127 (arcuate nucleus of hypothalamus KNDy neuron) @@ -32917,6 +37050,8 @@ AnnotationAssertion(terms:contributor obo:CL_4023127 ) AnnotationAssertion(rdfs:label obo:CL_4023127 "arcuate nucleus of hypothalamus KNDy neuron") EquivalentClasses(obo:CL_4023127 ObjectIntersectionOf(obo:CL_4023125 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001932))) +SubClassOf(obo:CL_4023127 obo:CL_4023125) +SubClassOf(obo:CL_4023127 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001932)) # Class: obo:CL_4023128 (rostral periventricular region of the third ventricle KNDy neuron) @@ -32927,6 +37062,8 @@ AnnotationAssertion(terms:contributor obo:CL_4023128 ) AnnotationAssertion(rdfs:label obo:CL_4023154 "myelinating glial cell") EquivalentClasses(obo:CL_4023154 ObjectIntersectionOf(obo:CL_0000125 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0043209))) +SubClassOf(obo:CL_4023154 obo:CL_0000125) +SubClassOf(obo:CL_4023154 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0043209)) # Class: obo:CL_4023158 (octopus cell of the mammalian cochlear nucleus) @@ -32962,7 +37104,7 @@ AnnotationAssertion(obo:IAO_0000116 obo:CL_4023158 "This term is restricted to t AnnotationAssertion(terms:contributor obo:CL_4023158 ) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:11976365") Annotation(oboInOwl:hasDbXref "WikipediaVersioned:title=Cochlear_nucleus&oldid=1090176664") rdfs:comment obo:CL_4023158 "Octopus cells respond only at the onset of a broad-band simple tonal stimulus and form a pathway to the superior paraolivary nucleus and to the ventral nucleus of the lateral lemniscus.") AnnotationAssertion(rdfs:label obo:CL_4023158 "octopus cell of the mammalian cochlear nucleus") -SubClassOf(obo:CL_4023158 obo:CL_0000540) +SubClassOf(obo:CL_4023158 obo:CL_2000029) SubClassOf(obo:CL_4023158 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002831)) SubClassOf(obo:CL_4023158 ObjectSomeValuesFrom(obo:RO_0013001 obo:UBERON_8440043)) @@ -32972,6 +37114,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:15378039") obo:IAO_00001 AnnotationAssertion(terms:contributor obo:CL_4023159 ) AnnotationAssertion(rdfs:label obo:CL_4023159 "double bouquet cell") EquivalentClasses(obo:CL_4023159 ObjectIntersectionOf(obo:CL_0000099 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070061))) +SubClassOf(obo:CL_4023159 obo:CL_0000099) +SubClassOf(obo:CL_4023159 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070061)) # Class: obo:CL_4023160 (cartwheel cell) @@ -32980,28 +37124,28 @@ AnnotationAssertion(terms:contributor obo:CL_4023160 ) AnnotationAssertion(rdfs:label obo:CL_4023161 "unipolar brush cell") -SubClassOf(obo:CL_4023161 obo:CL_0000099) +SubClassOf(obo:CL_4023161 obo:CL_0000402) +SubClassOf(obo:CL_4023161 obo:CL_0000679) SubClassOf(obo:CL_4023161 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070025)) SubClassOf(obo:CL_4023161 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002028)) -SubClassOf(obo:CL_4023161 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061535)) # Class: obo:CL_4023162 (bushy cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "WikipediaVersioned:Bushy_cell&oldid=879061753") obo:IAO_0000115 obo:CL_4023162 "A neuron found in the anterior part of the ventral cochlear nucleus that has the appearance of bushes, having short dendrites. Bushy cells give outputs to different parts of the superior olivary complex.") AnnotationAssertion(terms:contributor obo:CL_4023162 ) AnnotationAssertion(rdfs:label obo:CL_4023162 "bushy cell") -SubClassOf(obo:CL_4023162 obo:CL_0000540) +SubClassOf(obo:CL_4023162 obo:CL_2000029) SubClassOf(obo:CL_4023162 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002830)) SubClassOf(obo:CL_4023162 ObjectSomeValuesFrom(obo:RO_0013001 obo:UBERON_0002128)) @@ -33027,6 +37171,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:22865660") obo:IAO_00001 AnnotationAssertion(terms:contributor obo:CL_4023168 ) AnnotationAssertion(rdfs:label obo:CL_4023168 "somatosensory neuron") EquivalentClasses(obo:CL_4023168 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003942))) +SubClassOf(obo:CL_4023168 obo:CL_0000540) +SubClassOf(obo:CL_4023168 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003942)) # Class: obo:CL_4023169 (trigeminal neuron) @@ -33041,7 +37187,9 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "https://www.ncbi.nlm.nih.gov/ AnnotationAssertion(terms:contributor obo:CL_4023170 ) AnnotationAssertion(rdfs:label obo:CL_4023170 "trigeminal sensory neuron") EquivalentClasses(obo:CL_4023170 ObjectIntersectionOf(obo:CL_4023169 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050906))) -SubClassOf(obo:CL_4023170 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003942)) +SubClassOf(obo:CL_4023170 obo:CL_0000006) +SubClassOf(obo:CL_4023170 obo:CL_4023168) +SubClassOf(obo:CL_4023170 obo:CL_4023169) # Class: obo:CL_4023171 (trigeminal motor neuron) @@ -33049,6 +37197,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "https://www.ncbi.nlm.nih.gov/ AnnotationAssertion(terms:contributor obo:CL_4023171 ) AnnotationAssertion(rdfs:label obo:CL_4023171 "trigeminal motor neuron") EquivalentClasses(obo:CL_4023171 ObjectIntersectionOf(obo:CL_0000100 obo:CL_4023169)) +SubClassOf(obo:CL_4023171 obo:CL_0000100) +SubClassOf(obo:CL_4023171 obo:CL_4023169) # Class: obo:CL_4023181 (hypendymal cell) @@ -33057,6 +37207,7 @@ AnnotationAssertion(terms:contributor obo:CL_4023181 ) AnnotationAssertion(terms:date obo:CL_4030059 "2023-10-10T14:10:21Z"^^xsd:dateTime) +AnnotationAssertion(oboInOwl:hasDbXref obo:CL_4030059 "ILX:0770156") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34004146") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4030059 "L2/3 IT") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37824655") rdfs:comment obo:CL_4030059 "Hystorically, the L2/3 intratelencephalic projectic glutametergic neuron was known to have its soma in cortical layer 2/3. MERFISH data showed that this intratelencephalic-projecting glutametergic neuron can have its soma in layer 2/3, 4B, 4C. The position of the soma in layer 4b and 4C is less frequent for this neuronal type in comparison to cortical layer 2/3.") AnnotationAssertion(rdfs:label obo:CL_4030059 "L2/3 intratelencephalic projecting glutamatergic neuron") EquivalentClasses(obo:CL_4030059 ObjectIntersectionOf(obo:CL_4023040 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_8440000))) +SubClassOf(obo:CL_4030059 obo:CL_4023040) +SubClassOf(obo:CL_4030059 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_8440000)) # Class: obo:CL_4030060 (L2 intratelencephalic projecting glutamatergic neuron) +AnnotationAssertion(obo:IAO_0000028 obo:CL_4030060 "L2 IT") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34004146") obo:IAO_0000115 obo:CL_4030060 "An intratelencephalic-projecting glutamatergic neuron with a soma found in cortical layer 2.") AnnotationAssertion(terms:contributor obo:CL_4030060 ) AnnotationAssertion(terms:date obo:CL_4030060 "2023-10-10T14:10:36Z"^^xsd:dateTime) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34004146") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4030060 "L2 IT") AnnotationAssertion(rdfs:label obo:CL_4030060 "L2 intratelencephalic projecting glutamatergic neuron") EquivalentClasses(obo:CL_4030060 ObjectIntersectionOf(obo:CL_4023040 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0005391))) +SubClassOf(obo:CL_4030060 obo:CL_4023040) +SubClassOf(obo:CL_4030060 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0005391)) # Class: obo:CL_4030061 (L3 intratelencephalic projecting glutamatergic neuron) +AnnotationAssertion(obo:IAO_0000028 obo:CL_4030061 "L3 IT") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34004146") obo:IAO_0000115 obo:CL_4030061 "An intratelencephalic-projecting glutamatergic neuron with a soma found in cortical layer 3.") AnnotationAssertion(terms:contributor obo:CL_4030061 ) AnnotationAssertion(terms:date obo:CL_4030061 "2023-10-10T14:10:47Z"^^xsd:dateTime) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34004146") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4030061 "L3 IT") AnnotationAssertion(rdfs:label obo:CL_4030061 "L3 intratelencephalic projecting glutamatergic neuron") EquivalentClasses(obo:CL_4030061 ObjectIntersectionOf(obo:CL_4023040 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0005392))) +SubClassOf(obo:CL_4030061 obo:CL_4023040) +SubClassOf(obo:CL_4030061 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0005392)) # Class: obo:CL_4030062 (L4/5 intratelencephalic projecting glutamatergic neuron) +AnnotationAssertion(obo:IAO_0000028 obo:CL_4030062 "L4/5 IT") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34004146") obo:IAO_0000115 obo:CL_4030062 "An intratelencephalic-projecting glutamatergic with a soma located in cortical layer 4/5.") AnnotationAssertion(terms:contributor obo:CL_4030062 ) AnnotationAssertion(terms:date obo:CL_4030062 "2023-10-10T14:11:04Z"^^xsd:dateTime) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34004146") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4030062 "L4/5 IT") AnnotationAssertion(rdfs:label obo:CL_4030062 "L4/5 intratelencephalic projecting glutamatergic neuron") EquivalentClasses(obo:CL_4030062 ObjectIntersectionOf(obo:CL_4023040 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_8440001))) +SubClassOf(obo:CL_4030062 obo:CL_4023040) +SubClassOf(obo:CL_4030062 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_8440001)) # Class: obo:CL_4030063 (L4 intratelencephalic projecting glutamatergic neuron) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37292694") obo:IAO_0000115 obo:CL_4030063 "An intratelencephalic-projecting glutamatergic neuron with a soma found in cortical layer 4.") +AnnotationAssertion(obo:IAO_0000028 obo:CL_4030063 "L4 IT") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37292694") Annotation(oboInOwl:hasDbXref "PMID:37824655") Annotation(oboInOwl:hasDbXref "https://cellxgene.cziscience.com/e/c3aa4f95-7a18-4a7d-8dd8-ca324d714363.cxg/") obo:IAO_0000115 obo:CL_4030063 "A transcriptomically distinct intratelencephalic-projecting glutamatergic neuron with a soma found in cortical layer 3-4. This neuron type can have a pyramidal, star-pyramidal or spiny stellate morphology and projects its output to L2/3 and L5A/B. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: IT-projecting excitatory neurons', Author Categories: 'CrossArea_subclass', L4 IT.") AnnotationAssertion(terms:contributor obo:CL_4030063 ) AnnotationAssertion(terms:date obo:CL_4030063 "2023-10-10T14:11:25Z"^^xsd:dateTime) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37292694") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4030063 "L4 IT") +AnnotationAssertion(rdfs:comment obo:CL_4030063 "Historically, the L4 intratelencephalic projectic glutametergic neuron was known to have its soma in cortical layer 4. MERFISH data showed that this intratelencephalic-projecting glutametergic neuron can also have its soma in layer 3.") AnnotationAssertion(rdfs:label obo:CL_4030063 "L4 intratelencephalic projecting glutamatergic neuron") EquivalentClasses(obo:CL_4030063 ObjectIntersectionOf(obo:CL_4023040 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0005393))) +SubClassOf(obo:CL_4030063 obo:CL_4023040) +SubClassOf(obo:CL_4030063 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0005393)) # Class: obo:CL_4030064 (L5 intratelencephalic projecting glutamatergic neuron) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37292694") Annotation(oboInOwl:hasDbXref "PMID:37609206") obo:IAO_0000115 obo:CL_4030064 "An intratelencephalic-projecting glutamatergic neuron with a soma found in cortical layer 5.") +AnnotationAssertion(obo:IAO_0000028 obo:CL_4030064 "L5 IT") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37292694") Annotation(oboInOwl:hasDbXref "PMID:37609206") Annotation(oboInOwl:hasDbXref "PMID:37824655") Annotation(oboInOwl:hasDbXref "https://cellxgene.cziscience.com/e/c3aa4f95-7a18-4a7d-8dd8-ca324d714363.cxg/") obo:IAO_0000115 obo:CL_4030064 "An intratelencephalic-projecting glutamatergic neuron with a soma found in cortical layer 5. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: IT-projecting excitatory neurons', Author Categories: 'CrossArea_subclass', L5 IT.") AnnotationAssertion(terms:contributor obo:CL_4030064 ) AnnotationAssertion(terms:date obo:CL_4030064 "2023-10-10T14:11:59Z"^^xsd:dateTime) +AnnotationAssertion(oboInOwl:hasDbXref obo:CL_4030064 "ILX:0770157") AnnotationAssertion(Annotation(oboInOwl:SynonymTypeProperty obo:OMO_0003000) Annotation(oboInOwl:hasDbXref "PMID:37292694") oboInOwl:hasRelatedSynonym obo:CL_4030064 "L5 IT") AnnotationAssertion(rdfs:label obo:CL_4030064 "L5 intratelencephalic projecting glutamatergic neuron") EquivalentClasses(obo:CL_4030064 ObjectIntersectionOf(obo:CL_4023040 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0005394))) +SubClassOf(obo:CL_4030064 obo:CL_4023040) +SubClassOf(obo:CL_4030064 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0005394)) # Class: obo:CL_4030065 (L6 intratelencephalic projecting glutamatergic neuron) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37292694") Annotation(oboInOwl:hasDbXref "PMID:37609206") obo:IAO_0000115 obo:CL_4030065 "An intratelencephalic-projecting glutamatergic neuron with a soma found in cortical layer 6.") +AnnotationAssertion(obo:IAO_0000028 obo:CL_4030065 "L6 IT") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37292694") Annotation(oboInOwl:hasDbXref "PMID:37609206") Annotation(oboInOwl:hasDbXref "PMID:37824655") Annotation(oboInOwl:hasDbXref "https://cellxgene.cziscience.com/e/c3aa4f95-7a18-4a7d-8dd8-ca324d714363.cxg/") obo:IAO_0000115 obo:CL_4030065 "A transcriptomically distinct intratelencephalic-projecting glutamatergic neuron with a soma found in L6 of the primary motor cortex. These cells are short untufted pyramidal cells, which could be stellate or inverted. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: IT-projecting excitatory neurons', Author Categories: 'CrossArea_subclass', L6 IT.") AnnotationAssertion(terms:contributor obo:CL_4030065 ) AnnotationAssertion(terms:date obo:CL_4030065 "2023-10-10T14:12:23Z"^^xsd:dateTime) +AnnotationAssertion(oboInOwl:hasDbXref obo:CL_4030065 "ILX:0770158") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37292694") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4030065 "L6 IT") AnnotationAssertion(rdfs:label obo:CL_4030065 "L6 intratelencephalic projecting glutamatergic neuron") EquivalentClasses(obo:CL_4030065 ObjectIntersectionOf(obo:CL_4023040 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0005395))) +SubClassOf(obo:CL_4030065 obo:CL_4023040) +SubClassOf(obo:CL_4030065 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0005395)) # Class: obo:CL_4030066 (ureteric bud cell) @@ -33880,29 +38115,39 @@ AnnotationAssertion(terms:date obo:CL_4030066 "2023-10-13T11:22:42Z"^^xsd:dateTi AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:24183650") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4030066 "UB cell") AnnotationAssertion(rdfs:label obo:CL_4030066 "ureteric bud cell") EquivalentClasses(obo:CL_4030066 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000084))) +SubClassOf(obo:CL_4030066 obo:BFO_0000002) +SubClassOf(obo:CL_4030066 obo:CL_0000068) +SubClassOf(obo:CL_4030066 obo:CL_0002518) +SubClassOf(obo:CL_4030066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000084)) SubClassOf(Annotation(oboInOwl:hasDbXref "PMID:9374839") obo:CL_4030066 ObjectSomeValuesFrom(obo:RO_0000056 obo:GO_2001013)) # Class: obo:CL_4030067 (L5/6 near-projecting glutamatergic neuron) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34004146") Annotation(oboInOwl:hasDbXref "PMID:37292694") obo:IAO_0000115 obo:CL_4030067 "A near-projecting glutamatergic neuron with a soma found in cortical layer 5/6.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34004146") Annotation(oboInOwl:hasDbXref "PMID:37292694") Annotation(oboInOwl:hasDbXref "PMID:37824655") obo:IAO_0000115 obo:CL_4030067 "A near-projecting glutamatergic neuron with a soma found in cortical layer 5/6.") AnnotationAssertion(terms:contributor obo:CL_4030067 ) AnnotationAssertion(terms:date obo:CL_4030067 "2023-11-17T11:35:06Z"^^xsd:dateTime) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34004146") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4030067 "L5/6 NP") AnnotationAssertion(rdfs:label obo:CL_4030067 "L5/6 near-projecting glutamatergic neuron") EquivalentClasses(obo:CL_4030067 ObjectIntersectionOf(obo:CL_4023012 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_8440002))) +SubClassOf(obo:CL_4030067 obo:CL_4023012) +SubClassOf(obo:CL_4030067 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_8440002)) # Class: obo:CL_4030068 (L6 intratelencephalic projecting Car3 glutamatergic neuron) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1016/j.cell.2021.04.021") Annotation(oboInOwl:hasDbXref "doi:10.1101/2022.11.06.515349") Annotation(oboInOwl:hasDbXref "doi:10.1101/2022.11.30.518285") obo:IAO_0000115 obo:CL_4030068 "An intratelencephalic-projecting glutamatergic neuron with a soma found in cortical layer 6 that expresses Car3.") +AnnotationAssertion(obo:IAO_0000028 obo:CL_4030068 "L6 IT Car3") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34004146") Annotation(oboInOwl:hasDbXref "PMID:37824655") Annotation(oboInOwl:hasDbXref "doi:10.1007/s00424-024-02923-2") Annotation(oboInOwl:hasDbXref "doi:10.1101/2022.11.30.518285") obo:IAO_0000115 obo:CL_4030068 "A transcriptomically distinct intratelencepalic-projecting glutamatergic neuron that expresses Car3 with a soma found in L6 . The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: IT-projecting excitatory neurons', Author Categories: 'CrossArea_cluster', L6 IT Car3.") AnnotationAssertion(terms:contributor obo:CL_4030068 ) AnnotationAssertion(terms:date obo:CL_4030068 "2023-11-23T09:16:14Z"^^xsd:dateTime) AnnotationAssertion(Annotation(oboInOwl:hasDbXref ) Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasExactSynonym obo:CL_4030068 "L6 IT Car3 glutamatergic neuron") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1101/2022.11.06.515349") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4030068 "L6 IT Car3") -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1101/2022.11.06.515349") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4030068 "L6 IT Car3 neuron") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37824655") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4030068 "L6 IT Car3 neuron") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1101/2022.11.30.518285") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4030068 "L6-IT-Car3") -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1101/2022.11.30.518285") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4030068 "L6-IT-Car3 cell") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37824655") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4030068 "L6-IT-Car3 cell") AnnotationAssertion(rdfs:label obo:CL_4030068 "L6 intratelencephalic projecting Car3 glutamatergic neuron") EquivalentClasses(obo:CL_4030068 ObjectIntersectionOf(obo:CL_4030065 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0005395) ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000004919))) +SubClassOf(obo:CL_4030068 obo:BFO_0000002) +SubClassOf(obo:CL_4030068 obo:CL_4030065) +SubClassOf(obo:CL_4030068 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000004919)) # Class: obo:CL_4032000 (club-like cell of the urethral epithelium) @@ -33916,6 +38161,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:30566875") oboInOwl:hasE AnnotationAssertion(oboInOwl:inSubset obo:CL_4032000 core:human_reference_atlas) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:30566875") rdfs:comment obo:CL_4032000 "Club cells typically refer to bronchiolar exocrine cells found in the lungs. This cell type is given the name club cell due to their similarity to club cells in the lungs.") AnnotationAssertion(rdfs:label obo:CL_4032000 "club-like cell of the urethral epithelium") +SubClassOf(obo:CL_4032000 obo:BFO_0000002) SubClassOf(obo:CL_4032000 obo:CL_1000296) SubClassOf(obo:CL_4032000 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000014505)) @@ -33928,6 +38174,9 @@ AnnotationAssertion(terms:contributor obo:CL_4032001 "http://orcid.org/0000-0001 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:29904965") oboInOwl:hasExactSynonym obo:CL_4032001 "rln GABAergic cortical interneuron") AnnotationAssertion(rdfs:label obo:CL_4032001 "reelin GABAergic cortical interneuron") EquivalentClasses(obo:CL_4032001 ObjectIntersectionOf(obo:CL_0000099 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000956) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061534) ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000013879))) +SubClassOf(obo:CL_4032001 obo:BFO_0000002) +SubClassOf(obo:CL_4032001 obo:CL_0010011) +SubClassOf(obo:CL_4032001 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000013879)) # Class: obo:CL_4033000 (endothelial cell of venule of lymph node) @@ -33935,6 +38184,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:28217126") obo:IAO_00001 AnnotationAssertion(terms:contributor obo:CL_4033000 ) AnnotationAssertion(rdfs:label obo:CL_4033000 "endothelial cell of venule of lymph node") EquivalentClasses(obo:CL_4033000 ObjectIntersectionOf(obo:CL_0000115 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_8410041))) +SubClassOf(obo:CL_4033000 obo:CL_0000115) +SubClassOf(obo:CL_4033000 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_8410041)) # Class: obo:CL_4033001 (endothelial cell of arteriole of lymph node) @@ -33942,6 +38193,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:28217126") obo:IAO_00001 AnnotationAssertion(terms:contributor obo:CL_4033001 ) AnnotationAssertion(rdfs:label obo:CL_4033001 "endothelial cell of arteriole of lymph node") EquivalentClasses(obo:CL_4033001 ObjectIntersectionOf(obo:CL_0000115 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_8410042))) +SubClassOf(obo:CL_4033001 obo:CL_1000412) +SubClassOf(obo:CL_4033001 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_8410042)) # Class: obo:CL_4033002 (neuroendocrine cell of epithelium of crypt of Lieberkuhn) @@ -33949,6 +38202,9 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:31390635") obo:IAO_00001 AnnotationAssertion(terms:contributor obo:CL_4033002 ) AnnotationAssertion(rdfs:label obo:CL_4033002 "neuroendocrine cell of epithelium of crypt of Lieberkuhn") EquivalentClasses(obo:CL_4033002 ObjectIntersectionOf(obo:CL_0000165 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0011184))) +SubClassOf(obo:CL_4033002 obo:CL_0000165) +SubClassOf(obo:CL_4033002 obo:CL_1001516) +SubClassOf(obo:CL_4033002 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0011184)) # Class: obo:CL_4033003 (myoepithelial cell of bronchus submucosal gland) @@ -33958,6 +38214,9 @@ AnnotationAssertion(terms:contributor obo:CL_4033003 ) AnnotationAssertion(rdfs:label obo:CL_4033004 "smooth muscle cell of taenia coli") EquivalentClasses(obo:CL_4033004 ObjectIntersectionOf(obo:CL_0000192 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0012419))) +SubClassOf(obo:CL_4033004 obo:CL_1000279) +SubClassOf(obo:CL_4033004 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0012419)) # Class: obo:CL_4033005 (serous secreting cell of bronchus submucosal gland) @@ -33974,6 +38235,9 @@ AnnotationAssertion(terms:contributor obo:CL_4033005 ) AnnotationAssertion(rdfs:label obo:CL_4033006 "endothelial cell of efferent lymphatic vessel") EquivalentClasses(obo:CL_4033006 ObjectIntersectionOf(obo:CL_0000115 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0010397))) +SubClassOf(obo:CL_4033006 obo:CL_0000115) +SubClassOf(obo:CL_4033006 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0010397)) # Class: obo:CL_4033007 (brush cell of epithelium of lobar bronchus) @@ -33990,6 +38256,9 @@ AnnotationAssertion(terms:contributor obo:CL_4033007 ) AnnotationAssertion(rdfs:label obo:CL_4033011 "smooth muscle cell of large intestine smooth muscle circular layer") EquivalentClasses(obo:CL_4033011 ObjectIntersectionOf(obo:CL_0000192 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0012398))) +SubClassOf(obo:CL_4033011 obo:CL_1000279) +SubClassOf(obo:CL_4033011 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0012398)) # Class: obo:CL_4033012 (smooth muscle cell of large intestine smooth muscle longitudinal layer) @@ -34031,6 +38310,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:24997029") obo:IAO_00001 AnnotationAssertion(terms:contributor obo:CL_4033012 ) AnnotationAssertion(rdfs:label obo:CL_4033012 "smooth muscle cell of large intestine smooth muscle longitudinal layer") EquivalentClasses(obo:CL_4033012 ObjectIntersectionOf(obo:CL_0000192 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0012399))) +SubClassOf(obo:CL_4033012 obo:CL_1000279) +SubClassOf(obo:CL_4033012 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0012399)) # Class: obo:CL_4033013 (suprabasal keratinocyte) @@ -34039,6 +38320,8 @@ AnnotationAssertion(terms:contributor obo:CL_4033013 ) AnnotationAssertion(terms:date obo:CL_4033036 "2023-04-04T10:54:15Z"^^xsd:dateTime) AnnotationAssertion(rdfs:label obo:CL_4033036 "OFFx cell") +SubClassOf(obo:CL_4033036 obo:BFO_0000002) SubClassOf(obo:CL_4033036 obo:CL_0000750) SubClassOf(obo:CL_4033036 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001786)) @@ -34329,7 +38633,10 @@ AnnotationAssertion(terms:contributor obo:CL_4033037 ) AnnotationAssertion(terms:date obo:CL_4033062 "2024-01-08T15:43:15Z"^^xsd:dateTime) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1007/978-3-030-84725-8") oboInOwl:hasExactSynonym obo:CL_4033062 "invasive interstitial extravillous trophoblast cell") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37630754") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4033062 "iEVT") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37630754") oboInOwl:hasRelatedSynonym obo:CL_4033062 "interstitial extravillous trophoblast") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:11337369") oboInOwl:hasRelatedSynonym obo:CL_4033062 "interstitial trophoblast") +AnnotationAssertion(oboInOwl:inSubset obo:CL_4033062 core:human_reference_atlas) AnnotationAssertion(rdfs:label obo:CL_4033062 "interstitial extravillous trophoblast cell") +SubClassOf(obo:CL_4033062 obo:BFO_0000002) SubClassOf(obo:CL_4033062 obo:CL_0000351) SubClassOf(obo:CL_4033062 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0008036)) # Class: obo:CL_4033063 (endovascular extravillous trophoblast cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37630754") Annotation(oboInOwl:hasDbXref "doi:10.1007/978-3-030-84725-8") obo:IAO_0000115 obo:CL_4033063 "A trophoblast cell that invades the maternal spiral arteries and replace the endothelial lining, remodeling the vessels and allowing for adequate blood transport into the placenta. An endovascular extravillous trophoblast cell differentiates from an extravillous trophoblast cell. In humans, this cell can be distinguished by the expression of CD56.") +AnnotationAssertion(obo:RO_0002175 obo:CL_4033063 obo:NCBITaxon_9606) AnnotationAssertion(terms:contributor obo:CL_4033063 ) AnnotationAssertion(terms:date obo:CL_4033063 "2024-01-08T15:43:32Z"^^xsd:dateTime) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37630754") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4033063 "eEVT") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37630754") oboInOwl:hasRelatedSynonym obo:CL_4033063 "endovascular extravillous trophoblast") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:11337369") oboInOwl:hasRelatedSynonym obo:CL_4033063 "endovascular trophoblast") +AnnotationAssertion(oboInOwl:inSubset obo:CL_4033063 core:human_reference_atlas) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37630754") rdfs:comment obo:CL_4033063 "Shortly after implantation, the endovascular extravillous trophoblast cells occlude the maternal spiral arteries, preventing premature oxygen delivery to the placental villi and reducing fetal oxidative stress.") AnnotationAssertion(rdfs:label obo:CL_4033063 "endovascular extravillous trophoblast cell") +SubClassOf(obo:CL_4033063 obo:BFO_0000002) SubClassOf(obo:CL_4033063 obo:CL_0000351) SubClassOf(obo:CL_4033063 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0008036)) # Class: obo:CL_4033064 (uterine resident macrophage) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:36113384") obo:IAO_0000115 obo:CL_4033064 "A tissue-resident macrophage that is part of the uterus.") +AnnotationAssertion(obo:RO_0002175 obo:CL_4033064 obo:NCBITaxon_9606) AnnotationAssertion(terms:contributor obo:CL_4033064 ) AnnotationAssertion(terms:date obo:CL_4033064 "2024-01-08T16:05:09Z"^^xsd:dateTime) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:36113384") oboInOwl:hasBroadSynonym obo:CL_4033064 "uterine macrophage") +AnnotationAssertion(oboInOwl:inSubset obo:CL_4033064 core:human_reference_atlas) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:36113384") rdfs:comment obo:CL_4033064 "Uterine macrophages are reported to be evenly distributed throughout the endometrial stroma but with aggregations observed close to the lumen of superficial secretory glands.") AnnotationAssertion(rdfs:label obo:CL_4033064 "uterine resident macrophage") EquivalentClasses(obo:CL_4033064 ObjectIntersectionOf(obo:CL_0000864 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000995))) +SubClassOf(obo:CL_4033064 obo:CL_0000864) +SubClassOf(obo:CL_4033064 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000995)) + +# Class: obo:CL_4033065 (preplasmablast) + +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:21918187") Annotation(oboInOwl:hasDbXref "PMID:30755708") Annotation(oboInOwl:hasDbXref "PMID:33150420") obo:IAO_0000115 obo:CL_4033065 "A mature B cell that serves as an intermediate stage in the differentiation of naive B cells into a plasmablast. A preplasmablast expresses CD30 and IL-6R and lacks expression of CD20, CD23, CD38 and CD138.") +AnnotationAssertion(terms:contributor obo:CL_4033065 ) +AnnotationAssertion(terms:contributor obo:CL_4033065 ) +AnnotationAssertion(terms:date obo:CL_4033065 "2024-04-25T09:14:58Z"^^xsd:dateTime) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:23613519") oboInOwl:hasExactSynonym obo:CL_4033065 "pre-plasmablast") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:33661294") oboInOwl:hasExactSynonym obo:CL_4033065 "preplasmablastic cell") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:21918187") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4033065 "prePB") +AnnotationAssertion(rdfs:label obo:CL_4033065 "preplasmablast") +SubClassOf(obo:CL_4033065 obo:CL_0000785) +SubClassOf(obo:CL_4033065 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000788)) +SubClassOf(obo:CL_4033065 ObjectSomeValuesFrom(obo:RO_0002203 obo:CL_0000980)) # Class: obo:CL_4040000 (glial restricted tripotential precursor cell) @@ -34680,7 +39038,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:11921204") oboInOwl:hasE AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:11756508") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4040000 "GRP cell") AnnotationAssertion(rdfs:label obo:CL_4040000 "glial restricted tripotential precursor cell") SubClassOf(obo:CL_4040000 obo:CL_0000123) -SubClassOf(obo:CL_4040000 obo:CL_0011115) +SubClassOf(obo:CL_4040000 obo:CL_0011026) # Class: obo:CL_4040001 (chorionic girdle cell) @@ -34691,8 +39049,7 @@ AnnotationAssertion(terms:date obo:CL_4040001 "2023-04-03T15:08:05Z"^^xsd:dateTi AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:35328607") oboInOwl:hasExactSynonym obo:CL_4040001 "equine chorionic girdle cell") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:27280409") oboInOwl:note obo:CL_4040001 "Humans, mice and rats have a highly invasive (hemochorial) placentation. Horses have a non-invasive epitheliochorial placenta, except for the transient endometrial cup.") AnnotationAssertion(rdfs:label obo:CL_4040001 "chorionic girdle cell") -SubClassOf(obo:CL_4040001 obo:CL_0000351) -SubClassOf(obo:CL_4040001 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003124)) +SubClassOf(obo:CL_4040001 obo:CL_0011101) # Class: obo:CL_4040002 (enteroglial cell) @@ -34703,6 +39060,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:11169131") Annotation(ob AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:11169131") Annotation(oboInOwl:hasSynonymType obo:OMO_0003004) oboInOwl:hasRelatedSynonym obo:CL_4040002 "enteric glia") AnnotationAssertion(rdfs:label obo:CL_4040002 "enteroglial cell") EquivalentClasses(obo:CL_4040002 ObjectIntersectionOf(obo:CL_0000125 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002005))) +SubClassOf(obo:CL_4040002 obo:CL_0000125) +SubClassOf(obo:CL_4040002 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002005)) SubClassOf(obo:CL_4040002 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000007939)) # Class: obo:CL_4040003 (fetal pre-type II pneumocyte) @@ -34727,6 +39086,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:30210548") oboInOwl:hasE AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:31377878") oboInOwl:hasExactSynonym obo:CL_4040004 "orbital adipose-derived mesenchymal stem cell") AnnotationAssertion(rdfs:label obo:CL_4040004 "mesenchymal stem cell of orbital adipose tissue") EquivalentClasses(obo:CL_4040004 ObjectIntersectionOf(obo:CL_0002570 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004088))) +SubClassOf(obo:CL_4040004 obo:CL_0002570) +SubClassOf(obo:CL_4040004 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004088)) # Class: obo:CL_4040005 (mesenchymal stem cell of apical papilla) @@ -34741,9 +39102,147 @@ AnnotationAssertion(rdfs:label obo:CL_4040005 "mesenchymal stem cell of apical p SubClassOf(obo:CL_4040005 obo:CL_0000134) SubClassOf(obo:CL_4040005 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003677)) - +# Class: obo:CL_4040006 (dermal chromatophore) + +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:28553007") obo:IAO_0000115 obo:CL_4040006 "A chromatophore that is part of the dermis.") +AnnotationAssertion(terms:contributor obo:CL_4040006 ) +AnnotationAssertion(terms:date obo:CL_4040006 "2024-03-07T09:37:14Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:CL_4040006 "dermal chromatophore") +SubClassOf(obo:CL_4040006 obo:CL_0000147) +SubClassOf(obo:CL_4040006 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002067)) + +# Class: obo:CL_4042001 (TAC3-positive striatal interneuron) + +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:32999462") Annotation(oboInOwl:hasDbXref "PMID:34727523") obo:IAO_0000115 obo:CL_4042001 "A GABAergic interneuron that has its soma located in the striatum and that has an enriched expression of the gene TAC3.") +AnnotationAssertion(terms:contributor obo:CL_4042001 ) +AnnotationAssertion(terms:date obo:CL_4042001 "2024-03-05T14:29:32Z"^^xsd:dateTime) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34727523") oboInOwl:hasExactSynonym obo:CL_4042001 "TAC3 interneuron") +AnnotationAssertion(rdfs:label obo:CL_4042001 "TAC3-positive striatal interneuron"@en) +SubClassOf(obo:CL_4042001 obo:CL_0000402) +SubClassOf(obo:CL_4042001 obo:CL_0011005) +SubClassOf(obo:CL_4042001 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002435)) +SubClassOf(obo:CL_4042001 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000016004)) + +# Class: obo:CL_4042002 (TAC3-positive medium spiny neuron) + +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34727523") obo:IAO_0000115 obo:CL_4042002 "A nucleus accumbens shell and olfactory tubercle D1 medium spiny neuron that co-expresses TAC3 and the DRD1 receptor.") +AnnotationAssertion(terms:contributor obo:CL_4042002 ) +AnnotationAssertion(terms:date obo:CL_4042002 "2024-03-05T13:36:54Z"^^xsd:dateTime) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34727523") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4042002 "D1Sh TAC3 archetype") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34727523") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4042002 "TAC3-positive D1Sh-MSN") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34727523") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4042002 "TAC3-positive MSN") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34727523") rdfs:comment obo:CL_4042002 "A TAC3-positive medium spiny neuron has its soma in a cluster in the medial shell region of the nucleus accumbens. In Rhesus Macaque, this medium spiny neuron has an enriched expression of the genes MPPED1, HPCAL1, MEIS3.") +AnnotationAssertion(rdfs:label obo:CL_4042002 "TAC3-positive medium spiny neuron"@en) +SubClassOf(obo:CL_4042002 obo:CL_4030051) +SubClassOf(obo:CL_4042002 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000016004)) + +# Class: obo:CL_4042003 (border associated macrophage) + +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37232741") Annotation(oboInOwl:hasDbXref "PMID:37626977") obo:IAO_0000115 obo:CL_4042003 "A central nervous system macrophage that is part of a choroid plexus, a meninx and a perivascular space. A border associated macrophage interacts with various components of the CNS vasculature and meninges, it participates in immune surveillance and in the regulation of the blood brain barrier.") +AnnotationAssertion(terms:contributor obo:CL_4042003 ) +AnnotationAssertion(terms:date obo:CL_4042003 "2024-03-26T16:39:56Z"^^xsd:dateTime) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:36945367") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4042003 "BAM") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:33556248") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4042003 "CAM") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37232741") oboInOwl:hasRelatedSynonym obo:CL_4042003 "CNS-associated macrophage") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:29426702") Annotation(oboInOwl:hasDbXref "PMID:37232741") rdfs:comment obo:CL_4042003 "In humans, a border associate macrophage expresses CD45 and CD11B. This cell is also known to have the following molecular signature: CD206, CD38, LYVE1, CD163, CD169.") +AnnotationAssertion(rdfs:label obo:CL_4042003 "border associated macrophage"@en) +SubClassOf(obo:CL_4042003 obo:CL_0000878) + +# Class: obo:CL_4042004 (choroid epiplexus macrophage) + +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:31061494") Annotation(oboInOwl:hasDbXref "PMID:37232741") obo:IAO_0000115 obo:CL_4042004 "A choroid plexus macrophage that is part of the apical surface of some choroid plexus epithelium. This macrophage has a star-like shaped body.") +AnnotationAssertion(terms:contributor obo:CL_4042004 ) +AnnotationAssertion(terms:date obo:CL_4042004 "2024-03-26T19:14:58Z"^^xsd:dateTime) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:31433571") oboInOwl:hasExactSynonym obo:CL_4042004 "Kolmer’s cell") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:38347231") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4042004 "cpepiMΦ") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:38347231") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4042004 "epiplexus cpMΦ") +AnnotationAssertion(rdfs:label obo:CL_4042004 "choroid epiplexus macrophage"@en) +SubClassOf(obo:CL_4042004 obo:CL_0000880) +SubClassOf(obo:CL_4042004 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003911)) + +# Class: obo:CL_4042005 (stromal choroid plexus macrophage) + +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:38347231") obo:IAO_0000115 obo:CL_4042005 "A choroid plexus macrophage that is part of a choroid plexus stroma.") +AnnotationAssertion(terms:contributor obo:CL_4042005 ) +AnnotationAssertion(terms:date obo:CL_4042005 "2024-03-26T19:21:51Z"^^xsd:dateTime) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37626977") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4042005 "cpstMΦ") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37232741") Annotation(oboInOwl:hasDbXref "PMID:38347231") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4042005 "stromal cpMΦ") +AnnotationAssertion(rdfs:label obo:CL_4042005 "stromal choroid plexus macrophage"@en) +SubClassOf(obo:CL_4042005 obo:CL_0000880) +SubClassOf(obo:CL_4042005 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005206)) + +# Class: obo:CL_4042006 (dural macrophage) + +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:31061494") obo:IAO_0000115 obo:CL_4042006 "A border associated macrophage which is part of a dura matter. This macrophage phagocytoses intruding pathogens and foreign molecules detected in the bloodstream or in the cerebrospinal fluid. This cell has an amoeboid body with dynamic protrusions in homeostasis.") +AnnotationAssertion(terms:contributor obo:CL_4042006 ) +AnnotationAssertion(terms:date obo:CL_4042006 "2024-03-26T19:27:03Z"^^xsd:dateTime) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37232741") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4042006 "dmMΦ") +AnnotationAssertion(rdfs:label obo:CL_4042006 "dural macrophage"@en) +SubClassOf(obo:CL_4042006 obo:CL_4042003) +SubClassOf(obo:CL_4042006 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002092)) + +# Class: obo:CL_4042007 (protoplasmic astrocyte) + +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:19279265") Annotation(oboInOwl:hasDbXref "PMID:25904839") Annotation(oboInOwl:hasDbXref "PMID:34616062") Annotation(oboInOwl:hasDbXref "PMID:37139179") Annotation(oboInOwl:hasDbXref "PMID:37824655") obo:IAO_0000115 obo:CL_4042007 "An astrocyte with highly branched protrusions, found in neocortex layers 2-6. It is involved with the formation and elimination of synapses, glutamate clearance, modulation of synaptic functions and regulation of blood flow in response to synaptic activity.") +AnnotationAssertion(terms:contributor obo:CL_4042007 ) +AnnotationAssertion(terms:date obo:CL_4042007 "2024-04-08T16:01:24Z"^^xsd:dateTime) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:19279265") Annotation(oboInOwl:hasDbXref "PMID:20012068") rdfs:comment obo:CL_4042007 "This astrocyte extends its branches to several hundred of dendrites to multiple neurons to envelope 100,000 or more synapses. In humans, a protoplasmic astrocyte has an average diameter of 142 µm, and its diameter ranges between 100 and 400 µm. In rodents the average diameter of a protoplasmic astrocites is 56 µm.") +AnnotationAssertion(rdfs:label obo:CL_4042007 "protoplasmic astrocyte"@en) +SubClassOf(obo:CL_4042007 obo:CL_0000029) +SubClassOf(obo:CL_4042007 obo:CL_0002605) +SubClassOf(obo:CL_4042007 obo:CL_0010012) +SubClassOf(obo:CL_4042007 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001950)) +SubClassOf(obo:CL_4042007 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001950)) + +# Class: obo:CL_4042008 (fibrous astrocyte) + +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:19279265") Annotation(oboInOwl:hasDbXref "PMID:22144298") Annotation(oboInOwl:hasDbXref "PMID:28280934") Annotation(oboInOwl:hasDbXref "PMID:31435019") Annotation(oboInOwl:hasDbXref "PMID:34616062") Annotation(oboInOwl:hasDbXref "PMID:37824655") obo:IAO_0000115 obo:CL_4042008 "A cell type located in the first layer of the neocortex with radial protrusions extending transversely into the deeper cortex layers, herby facilitating communication across neurons, astrocytes, capillaries, meninges and cerebrospinal fluid through contact with neurons, pia mater and capillaries.") +AnnotationAssertion(terms:contributor obo:CL_4042008 ) +AnnotationAssertion(terms:date obo:CL_4042008 "2024-04-08T16:29:28Z"^^xsd:dateTime) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:28280934") rdfs:comment obo:CL_4042008 "In humans, a fibrous astrocyte diameter is circa 182 µm. In rodents, a fibrous astrocyte diameter is circa 85 µm.") +AnnotationAssertion(rdfs:label obo:CL_4042008 "fibrous astrocyte"@en) +SubClassOf(obo:CL_4042008 obo:CL_0000029) +SubClassOf(obo:CL_4042008 obo:CL_0000127) +SubClassOf(obo:CL_4042008 obo:CL_2000029) +SubClassOf(obo:CL_4042008 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002316)) +SubClassOf(obo:CL_4042008 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002316)) + +# Class: obo:CL_4042009 (interlaminar astrocyte) + +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:19279265") Annotation(oboInOwl:hasDbXref "PMID:30552685") Annotation(oboInOwl:hasDbXref "PMID:31435019") Annotation(oboInOwl:hasDbXref "PMID:32930323") Annotation(oboInOwl:hasDbXref "PMID:34616062") Annotation(oboInOwl:hasDbXref "PMID:37824655") obo:IAO_0000115 obo:CL_4042009 "An astrocyte type that presents radial protrusions across the layers of a cortex. The soma of this astrocyte is part of the first layer of a neocortex. This astrocyte extents its protrusions transversally to the deeper layers of a cortex and it creates contact with neurons, the pia matter and capillaries. This astrocyte is involved in facilitating the communication across neurons, astrocytes, capillaries, meninges and the cerebrospinal fluid.") +AnnotationAssertion(terms:contributor obo:CL_4042009 ) +AnnotationAssertion(terms:date obo:CL_4042009 "2024-04-08T16:33:45Z"^^xsd:dateTime) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:30552685") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4042009 "ILA") +AnnotationAssertion(rdfs:label obo:CL_4042009 "interlaminar astrocyte"@en) +SubClassOf(obo:CL_4042009 obo:CL_0000029) +SubClassOf(obo:CL_4042009 obo:CL_0002605) +SubClassOf(obo:CL_4042009 obo:CL_0010012) +SubClassOf(obo:CL_4042009 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001950)) +SubClassOf(obo:CL_4042009 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001950)) + +# Class: obo:CL_4042010 (pial interlaminar astrocyte) + +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:32930323") Annotation(oboInOwl:hasDbXref "PMID:37139179") obo:IAO_0000115 obo:CL_4042010 "An interlaminar astrocyte whose soma is part of the first layer of a neocortex and is in contact with a pia surface.") +AnnotationAssertion(terms:contributor obo:CL_4042010 ) +AnnotationAssertion(terms:date obo:CL_4042010 "2024-04-08T16:37:57Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:CL_4042010 "pial interlaminar astrocyte"@en) +SubClassOf(obo:CL_4042010 obo:CL_4042009) + +# Class: obo:CL_4042011 (subpial interlaminar astrocyte) + +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:32930323") Annotation(oboInOwl:hasDbXref "PMID:37139179") obo:IAO_0000115 obo:CL_4042011 "An interlaminar astrocyte type whose soma is part of the upper first layer of the neocortex and its processes extend to a pia surface.") +AnnotationAssertion(terms:contributor obo:CL_4042011 ) +AnnotationAssertion(terms:date obo:CL_4042011 "2024-04-08T16:39:09Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:CL_4042011 "subpial interlaminar astrocyte"@en) +SubClassOf(obo:CL_4042011 obo:CL_4042009) +SubClassOf(obo:CL_4042011 ObjectSomeValuesFrom(obo:RO_0002170 obo:UBERON_0002361)) + + +SubClassOf(ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001407)) ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0005634)) +SubClassOf(ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001908)) ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0005634)) SubClassOf(ObjectIntersectionOf(obo:CL_0000163 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000160)) obo:CL_0000164) SubClassOf(ObjectIntersectionOf(obo:CL_0000163 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000945)) obo:CL_0000164) SubClassOf(ObjectIntersectionOf(obo:CL_0000163 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001264)) obo:CL_0000164) SubClassOf(Annotation(oboInOwl:hasDbXref ) ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_7742)) ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000031)) +DisjointClasses(ObjectSomeValuesFrom(obo:BFO_0000050 obo:CL_0000000) ObjectSomeValuesFrom(obo:BFO_0000050 obo:GO_0005576)) ) \ No newline at end of file diff --git a/src/ontology/reports/uberon-edit.obo-obo-report.tsv b/src/ontology/reports/uberon-edit.obo-obo-report.tsv index 5456b64a1e..c209db802e 100644 --- a/src/ontology/reports/uberon-edit.obo-obo-report.tsv +++ b/src/ontology/reports/uberon-edit.obo-obo-report.tsv @@ -21,7 +21,6 @@ WARN duplicate_label_synonym UBERON:0001004 oboInOwl:hasExactSynonym respiratory WARN duplicate_label_synonym UBERON:0001015 oboInOwl:hasExactSynonym musculature WARN duplicate_label_synonym UBERON:0001019 oboInOwl:hasExactSynonym nerve fasciculus WARN duplicate_label_synonym UBERON:0001031 oboInOwl:hasExactSynonym sheath of Schwann -WARN duplicate_label_synonym UBERON:0001072 oboInOwl:hasExactSynonym posterior vena cava WARN duplicate_label_synonym UBERON:0001079 oboInOwl:hasExactSynonym prezygapophysis WARN duplicate_label_synonym UBERON:0001080 oboInOwl:hasExactSynonym postzygapophysis WARN duplicate_label_synonym UBERON:0001121 oboInOwl:hasExactSynonym longus colli muscle diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo index 70bbdae5f4..5bb56388f4 100644 --- a/src/ontology/uberon-edit.obo +++ b/src/ontology/uberon-edit.obo @@ -222728,7 +222728,6 @@ def: "A hypothalamic region in rodents that is homologous to the lateral tuberal comment: While lateral tuberal nucleus is often used interchangeably with tuberal nucleus in rodents, lateral tuberal nucleus is specific to humans and higher primates. In some cases, lateral tuberal nucleus is thought to be part of the tuberal nucleus in rodents, and could possibly be homologous to human tuberal region instead. {xref="PMID:29976824", xref="neuronames:1890", xref="PMID:1362279"} synonym: "lateral tuberal nucleus (sensu Rodentia)" BROAD [neuronames:1890] synonym: "lateral tuberal nucleus (sensu Rodentia)" EXACT [PMID:29976812] -xref: DMBA:16271 xref: MBA:614 is_a: UBERON:0002308 ! nucleus of brain relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 ! Shawn Zheng Kai Tan diff --git a/src/ontology/uberon-odk.yaml b/src/ontology/uberon-odk.yaml index 1e024d4d07..1bb15d31eb 100644 --- a/src/ontology/uberon-odk.yaml +++ b/src/ontology/uberon-odk.yaml @@ -3,7 +3,8 @@ title: "Uberon multi-species anatomy ontology" github_org: obophenotype git_main_branch: master repo: uberon -#report_fail_on: ERROR +workflows: + - diff report_fail_on: None use_dosdps: TRUE use_mappings: True diff --git a/src/sparql/class-count-by-prefix.sparql b/src/sparql/class-count-by-prefix.sparql index 0c4d284469..a6a4851edd 100644 --- a/src/sparql/class-count-by-prefix.sparql +++ b/src/sparql/class-count-by-prefix.sparql @@ -7,4 +7,4 @@ SELECT ?prefix (COUNT(DISTINCT ?cls) AS ?numberOfClasses) WHERE FILTER (!isBlank(?cls)) BIND( STRBEFORE(STRAFTER(str(?cls),"http://purl.obolibrary.org/obo/"), "_") AS ?prefix) } -GROUP BY ?prefix +GROUP BY ?prefix \ No newline at end of file diff --git a/subsets/life-stages-composite.obo b/subsets/life-stages-composite.obo index beef637c58..eac5995e52 100755 --- a/subsets/life-stages-composite.obo +++ b/subsets/life-stages-composite.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: uberon/releases/2024-05-13/subsets/life-stages-composite.owl +data-version: uberon/releases/2024-06-14/subsets/life-stages-composite.owl subsetdef: 1_STAR "" subsetdef: 2_STAR "" subsetdef: 3_STAR "" @@ -122,8 +122,17 @@ synonymtypedef: synonym "" synonymtypedef: SYSTEMATIC "a systematic synonym used as the base name for design patterns" synonymtypedef: systematic_synonym "" synonymtypedef: vertebrate "" +idspace: dc http://purl.org/dc/elements/1.1/ +idspace: doap http://usefulinc.com/ns/doap# +idspace: foaf http://xmlns.com/foaf/0.1/ +idspace: oboInOwl http://www.geneontology.org/formats/oboInOwl# +idspace: skos http://www.w3.org/2004/02/skos/core# +idspace: sssom https://w3id.org/sssom/ +idspace: swrl http://www.w3.org/2003/11/swrl# +idspace: swrlb http://www.w3.org/2003/11/swrlb# +idspace: terms http://purl.org/dc/terms/ ontology: uberon/subsets/life-stages-composite -property_value: owl:versionInfo "2024-05-13" xsd:string +property_value: owl:versionInfo "2024-06-14" xsd:string [Term] id: BFO:0000001 @@ -1566,8 +1575,8 @@ namespace: chebi_ontology subset: 3_STAR synonym: ">C=O" RELATED [IUPAC] synonym: "carbonyl" EXACT IUPAC_NAME [IUPAC] -synonym: "carbonyl group" EXACT [UniProt] synonym: "carbonyl group" EXACT [ChEBI] +synonym: "carbonyl group" EXACT [UniProt] is_a: CHEBI:51422 ! organodiyl group [Term] @@ -3758,7 +3767,7 @@ comment: The definition of cell is intended to represent all cells, and thus a c subset: cellxgene_subset subset: ubprop:upper_level xref: CALOHA:TS-2035 -xref: FBbt:00007002 +xref: FBbt:00007002 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:68646 xref: GO:0005623 xref: KUPO:0000002 @@ -3766,6 +3775,7 @@ xref: MESH:D002477 xref: VHOG:0001533 xref: WBbt:0004017 xref: XAO:0003012 +xref: ZFA:0009000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: UBERON:0000061 ! anatomical structure relationship: only_in_taxon NCBITaxon:131567 ! cellular organisms @@ -3773,6 +3783,7 @@ relationship: only_in_taxon NCBITaxon:131567 ! cellular organisms id: CL:0000007 name: early embryonic cell (metazoa) def: "A cell found in the embryo before the formation of all the gem layers is complete." [GOC:tfm] +xref: ZFA:0009002 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0002321 ! embryonic cell (metazoa) [Term] @@ -3786,6 +3797,7 @@ subset: human_reference_atlas synonym: "animal stem cell" EXACT [] xref: CALOHA:TS-2086 xref: FMA:63368 +xref: ZFA:0005957 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0011115 ! precursor cell intersection_of: CL:0000000 ! cell intersection_of: capable_of GO:0017145 ! stem cell division @@ -3800,6 +3812,7 @@ def: "A stem cell from which all cells of the body can form." [GOC:add, GOC:tfm] synonym: "totipotential stem cell" EXACT [] xref: FMA:84790 xref: MESH:D039901 +xref: ZFA:0009024 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0000723 ! somatic stem cell [Term] @@ -3819,9 +3832,10 @@ name: myoblast def: "A cell that is commited to differentiating into a muscle cell. Embryonic myoblasts develop from the mesoderm. They undergo proliferation, migrate to their various sites, and then differentiate into the appropriate form of myocytes. Myoblasts also occur as transient populations of cells in muscles undergoing repair." [GOC:tfm, MESH:D032446, PMID:21849021] xref: BTO:0000222 xref: CALOHA:TS-0650 -xref: FBbt:00005083 +xref: FBbt:00005083 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:70335 xref: VHOG:0001529 +xref: ZFA:0009025 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0000680 ! muscle precursor cell [Term] @@ -3835,9 +3849,10 @@ synonym: "epitheliocyte" EXACT [] xref: BTO:0000414 xref: CALOHA:TS-2026 xref: CARO:0000077 -xref: FBbt:00000124 +xref: FBbt:00000124 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:66768 xref: WBbt:0003672 +xref: ZFA:0009034 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0000000 ! cell relationship: part_of UBERON:0000483 ! epithelium relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -3848,6 +3863,7 @@ id: CL:0000068 name: duct epithelial cell def: "An epithelial cell that is part of a duct." [https://orcid.org/0000-0001-5208-3432] subset: cellxgene_subset +xref: ZFA:0009372 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0000066 ! epithelial cell intersection_of: CL:0000066 ! epithelial cell intersection_of: part_of UBERON:0000058 ! duct @@ -3858,6 +3874,7 @@ id: CL:0000133 name: neurectodermal cell def: "Ectoderm destined to be nervous tissue." [GOC:tfm, ISBN:068340007X] synonym: "neurectoderm cell" EXACT [] +xref: ZFA:0009080 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0000221 ! ectodermal cell [Term] @@ -3877,9 +3894,10 @@ synonym: "myocyte" EXACT [] xref: BTO:0000888 xref: BTO:0000902 xref: CALOHA:TS-2032 -xref: FBbt:00005074 +xref: FBbt:00005074 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:67328 xref: WBbt:0003675 +xref: ZFA:0009114 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0000183 ! contractile cell is_a: CL:0000393 ! electrically responsive cell is_a: UBERON:0004120 ! mesoderm-derived structure @@ -3890,6 +3908,7 @@ property_value: depiction "https://www.swissbiopics.org/api/image/Muscle_cells.s id: CL:0000211 name: electrically active cell def: "A cell whose function is determined by the generation or the reception of an electric signal." [FB:ma] +xref: ZFA:0009128 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0000000 ! cell [Term] @@ -3898,6 +3917,7 @@ name: ectodermal cell def: "A cell of the outer of the three germ layers of the embryo." [MESH:D004475] synonym: "ectoderm cell" EXACT [] xref: FMA:72549 +xref: ZFA:0009137 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0002321 ! embryonic cell (metazoa) relationship: part_of UBERON:0000924 ! ectoderm @@ -3909,6 +3929,7 @@ subset: cellxgene_subset synonym: "mesoblast" EXACT [] synonym: "mesoderm cell" EXACT [] xref: FMA:72554 +xref: ZFA:0009138 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0002321 ! embryonic cell (metazoa) relationship: part_of UBERON:0000926 ! mesoderm @@ -3918,12 +3939,14 @@ name: endodermal cell def: "A cell of the inner of the three germ layers of the embryo." [MESH:D004707] synonym: "endoderm cell" EXACT [] xref: FMA:72555 +xref: ZFA:0009139 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0002321 ! embryonic cell (metazoa) relationship: part_of UBERON:0000925 ! endoderm [Term] id: CL:0000255 name: eukaryotic cell +def: "Any cell that only exists in Eukaryota." [FBC:Autogenerated] subset: cellxgene_subset xref: MESH:D005057 is_a: CL:0000000 ! cell @@ -3956,12 +3979,14 @@ relationship: only_in_taxon NCBITaxon:33208 ! Metazoa id: CL:0000393 name: electrically responsive cell def: "A cell whose function is determined by its response to an electric signal." [FB:ma] +xref: ZFA:0009190 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0000211 ! electrically active cell [Term] id: CL:0000404 name: electrically signaling cell def: "A cell that initiates an electrical signal and passes that signal to another cell." [FB:ma] +xref: ZFA:0009193 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0000211 ! electrically active cell [Term] @@ -3975,10 +4000,11 @@ subset: human_reference_atlas synonym: "nerve cell" EXACT [] xref: BTO:0000938 xref: CALOHA:TS-0683 -xref: FBbt:00005106 +xref: FBbt:00005106 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:54527 xref: VHOG:0001483 xref: WBbt:0003679 +xref: ZFA:0009248 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0000393 ! electrically responsive cell is_a: CL:0000404 ! electrically signaling cell is_a: CL:0002319 ! neural cell @@ -3991,6 +4017,7 @@ id: CL:0000680 name: muscle precursor cell def: "A non-terminally differentiated cell that is capable of developing into a muscle cell." [GOC:add] subset: cellxgene_subset +xref: ZFA:0009291 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0000055 ! non-terminally differentiated cell is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: CL:0011115 ! precursor cell @@ -4004,6 +4031,7 @@ name: somatic stem cell def: "A stem cell that can give rise to cell types of the body other than those of the germ-line." [GO:0048103] xref: CALOHA:TS-2086 xref: MESH:D053687 +xref: ZFA:0009307 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0000034 ! stem cell intersection_of: CL:0000034 ! stem cell intersection_of: capable_of GO:0048103 ! somatic stem cell division @@ -4014,6 +4042,7 @@ id: CL:0002077 name: ecto-epithelial cell def: "An epithelial cell derived from ectoderm." [FMA:69074, GOC:tfm] xref: FMA:69074 +xref: ZFA:0009385 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0000066 ! epithelial cell is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: CL:0000066 ! epithelial cell @@ -4043,6 +4072,7 @@ def: "A cell of the embryo." [FMA:0618947256] xref: CALOHA:TS-0263 xref: FMA:82840 xref: WBbt:0007028 +xref: ZFA:0007089 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0000000 ! cell relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-09-15T03:39:21Z @@ -20647,7 +20677,7 @@ synonym: "ducts" RELATED OMO:0003004 [XAO:0004000] synonym: "exocrine duct" NARROW [] synonym: "exocrine gland duct" NARROW [] xref: AAO:0011123 -xref: FBbt:00100314 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00100314 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:30320 xref: galen:Duct xref: NCIT:C12948 @@ -20696,7 +20726,7 @@ xref: BILA:0000003 xref: CARO:0000003 xref: EHDAA2:0003003 xref: EMAPA:0 -xref: FBbt:00007001 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007001 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:305751 xref: FMA:67135 xref: GAID:781 @@ -20910,11 +20940,11 @@ relationship: immediately_preceded_by UBERON:0000069 ! larval stage relationship: only_in_taxon NCBITaxon:33392 ! Endopterygota relationship: part_of UBERON:0000092 ! post-embryonic stage relationship: simultaneous_with GO:0035209 {notes="may be better to model pupal development as including the pre-pupal stage"} ! pupal development -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/ANiknejad -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/dosumis -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/fbastian -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mmc46 +property_value: dc:contributor https://github.com/ANiknejad +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/dosumis +property_value: dc:contributor https://github.com/fbastian +property_value: dc:contributor https://github.com/mmc46 property_value: seeAlso "https://github.com/obophenotype/uberon/issues/562" xsd:anyURI property_value: taxon_notes "The pupal stage is found only in holometabolous insects, those that undergo a complete metamorphosis, going through four life stages; embryo, larva, pupa and imago" xsd:string @@ -21053,7 +21083,7 @@ xref: BILS:0000106 xref: EFO:0001322 xref: EHDAA:27 xref: FBdv:00005288 -xref: IDOMAL:0000302 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: IDOMAL:0000302 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C12601 xref: PdumDv:0000100 xref: VHOG:0000745 @@ -21267,7 +21297,7 @@ xref: EFO:0000825 xref: EHDAA2:0001326 xref: EHDAA:542 xref: EMAPA:16262 -xref: FBbt:00003126 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003126 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:49184 xref: GAID:75 xref: galen:Mouth @@ -21384,7 +21414,7 @@ xref: CALOHA:TS-2101 xref: CARO:0000004 xref: EHDAA2:0003004 xref: EMAPA:35178 -xref: FBbt:00007019 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007019 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:9669 xref: galen:BodySubstance xref: HAO:0000004 @@ -21420,7 +21450,7 @@ xref: AEO:0000005 xref: BILA:0000005 xref: CARO:0000005 xref: EHDAA2:0003005 -xref: FBbt:00007017 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007017 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:5897 xref: HAO:0000005 xref: NCIT:C94478 @@ -21449,7 +21479,7 @@ xref: AEO:0000006 xref: BILA:0000006 xref: CARO:0000006 xref: EHDAA2:0003006 -xref: FBbt:00007016 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007016 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:67165 xref: HAO:0000006 xref: TAO:0001836 @@ -21475,7 +21505,7 @@ xref: AEO:0000007 xref: BILA:0000007 xref: CARO:0000007 xref: EHDAA2:0003007 -xref: FBbt:00007015 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007015 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:67112 xref: HAO:0000007 xref: TAO:0001835 @@ -21514,11 +21544,11 @@ xref: EHDAA2:0003011 xref: EHDAA:392 xref: EMAPA:16103 xref: EV:0100000 -xref: FBbt:00004856 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004856 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:7149 xref: galen:AnatomicalSystem xref: HAO:0000011 -xref: IDOMAL:0002460 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: IDOMAL:0002460 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MA:0000003 xref: NCIT:C12919 xref: SCTID:278195005 @@ -21570,7 +21600,7 @@ xref: EHDAA2:0003191 xref: EHDAA:1 xref: EMAPA:25765 xref: EV:0100016 -xref: FBbt:00000001 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000001 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:256135 xref: galen:Organism xref: HAO:0000012 @@ -21606,7 +21636,7 @@ xref: AEO:0000040 xref: BILA:0000040 xref: CARO:0000040 xref: EHDAA2:0003040 -xref: FBbt:00007013 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007013 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:63863 xref: HAO:0000040 xref: TAO:0000382 @@ -21639,7 +21669,7 @@ xref: CALOHA:TS-2090 xref: CARO:0000043 xref: EHDAA2:0003043 xref: EMAPA:35868 -xref: FBbt:00007003 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007003 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:9637 xref: galen:Tissue xref: HAO:0000043 @@ -21675,7 +21705,7 @@ xref: AEO:0000055 xref: BILA:0000055 xref: CARO:0000055 xref: EHDAA2:0003055 -xref: FBbt:00007010 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007010 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000055 xref: TAO:0001488 xref: TGMA:0001847 @@ -21709,7 +21739,7 @@ xref: CALOHA:TS-0288 xref: CARO:0000066 xref: EHDAA2:0003066 xref: EMAPA:32738 -xref: FBbt:00007005 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007005 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:9639 xref: GAID:402 xref: HAO:0000066 @@ -21788,11 +21818,11 @@ xref: EHDAA2:0000002 xref: EHDAA2_RETIRED:0003236 xref: EHDAA:38 xref: EMAPA:16039 -xref: FBbt:00000052 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000052 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:69068 xref: GAID:963 xref: http://neurolex.org/wiki/Category\:Embryonic_organism -xref: IDOMAL:0000646 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: IDOMAL:0000646 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MAT:0000226 xref: MESH:D004622 xref: MIAA:0000019 @@ -21834,7 +21864,7 @@ xref: AAO:0000480 xref: BILA:0000035 xref: BTO:0000556 xref: EMAPA:36033 -xref: FBbt:00000110 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000110 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:69069 xref: GAID:1303 xref: MESH:D005855 @@ -21869,7 +21899,7 @@ xref: EFO:0000414 xref: EHDAA2:0000428 xref: EMAPA:16069 xref: EV:0100003 -xref: FBbt:00000111 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000111 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:69070 xref: GAID:1304 xref: MAT:0000155 @@ -21911,7 +21941,7 @@ xref: EFO:0002545 xref: EHDAA2:0000436 xref: EMAPA:16062 xref: EV:0100005 -xref: FBbt:00000125 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000125 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:69071 xref: GAID:1305 xref: MAT:0000175 @@ -21958,7 +21988,7 @@ xref: EHDAA:160 xref: EHDAA:183 xref: EMAPA:16083 xref: EV:0100006 -xref: FBbt:00000126 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000126 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:69072 xref: GAID:522 xref: MAT:0000174 @@ -22003,7 +22033,7 @@ synonym: "stomodeal-hypophyseal primordium" BROAD [XAO:0000269] xref: BTO:0004224 xref: EHDAA2:0001929 xref: EMAPA:16263 -xref: FBbt:00000439 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000439 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:295846 xref: NCIT:C34306 xref: TAO:0001290 @@ -22085,7 +22115,7 @@ xref: BILA:0000082 xref: BTO:0000058 xref: CALOHA:TS-1293 xref: EFO:0000793 -xref: FBbt:00005055 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005055 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:7152 xref: GAID:278 xref: galen:DigestiveSystem @@ -22172,7 +22202,7 @@ xref: EHDAA2:0001246 xref: EHDAA:826 xref: EMAPA:16469 xref: EV:0100162 -xref: FBbt:00005093 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005093 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:7157 xref: GAID:466 xref: MA:0000016 @@ -22234,7 +22264,7 @@ xref: EHDAA:828 xref: EMAPA:16470 xref: EMAPA:16754 xref: EV:0100163 -xref: FBbt:00005094 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005094 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:55675 xref: GAID:570 xref: MA:0000167 @@ -22284,7 +22314,7 @@ xref: EMAPA:16164 xref: EMAPA:16757 xref: FMA:293882 xref: MAT:0000069 -xref: MESH:D054259 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D054259 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MIAA:0000069 xref: NCIT:C34226 xref: neuronames:1365 @@ -22320,7 +22350,7 @@ xref: BILA:0000000 xref: BIRNLEX:6 xref: CARO:0000000 xref: EHDAA2:0002229 -xref: FBbt:10000000 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:10000000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:62955 xref: HAO:0000000 xref: MA:0000001 @@ -22403,11 +22433,11 @@ xref: BTO:0000545 xref: EHDAA2:0000726 xref: EHDAA:518 xref: EMAPA:16247 -xref: FBbt:00003125 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003125 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:45615 xref: galen:AlimentaryTract xref: MA:0000917 -xref: MESH:D041981 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D041981 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C34082 xref: TAO:0000112 xref: TGMA:0001819 @@ -22479,7 +22509,7 @@ xref: BILA:0000034 xref: BTO:0000174 xref: CALOHA:TS-2110 xref: EFO:0000461 -xref: FBbt:00004208 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004208 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:69067 xref: GAID:407 xref: MESH:D004628 @@ -22528,10 +22558,10 @@ relationship: existence_ends_during UBERON:0000066 ! fully formed stage relationship: has_developmental_contribution_from UBERON:0000926 {notes="check ctenophore"} ! mesoderm relationship: has_part UBERON:0000383 ! musculature of body relationship: has_part UBERON:0001434 ! skeletal system +property_value: dc:contributor https://github.com/cmungall property_value: external_definition "Anatomical system that provides locomotion and physical support to the organism.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010546", ontology="AAO", source="AAO:EJS"} property_value: has_relational_adjective "musculoskeletal" xsd:string property_value: homology_notes "There are more than 50,000 extant vertebrate species, representing over 500 million years of evolution. During that time, the vertebrate musculoskeletal systems have adapted to aquatic, terrestrial, fossorial, and arboreal lifestyles, while simultaneously retaining functionally integrated axial and appendicular skeletal systems.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001275", ontology="VHOG", source="DOI:10.1002/jez.b.21246 Shearman RM, Burke AC, The lateral somitic frontier in ontogeny and phylogeny. Journal of Experimental Zoology (2009)", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall [Term] id: UBERON:0002328 @@ -22581,6 +22611,8 @@ relationship: part_of UBERON:0011137 ! axial skeletal system relationship: produces PR:000014841 ! sonic hedgehog protein relationship: ventral_to UBERON:0001049 ! neural tube property_value: axiom_lost_from_external_ontology "relationship type change: differentiates_from mesoderm (AAO:0000304) CHANGED TO: develops_from mesoderm (UBERON:0000926)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000327", ontology="AAO"} +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/wdahdul property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png" xsd:anyURI property_value: development_notes "In between vertebra the notochord becomes the nucleus pulposus, under it degenerates, and at anterior end in some species its tissue merges with some of the cranial bones.. Some organisms retain a post-embryonic notochord." xsd:string property_value: external_definition "Avascular multi-tissue structure composed of large vacuolated epithelial cells (chordablasts) and perichordal fibrous tissue.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000032", ontology="VSAO", source="PSPUB:0000170"} @@ -22588,8 +22620,6 @@ property_value: external_definition "Rod-like principal supportive element of th property_value: external_definition "Slender rod of fibrous connective tissue surrounding a core of fluid-filled cells of mesodermal origin; it lies above the gut and directly beneath the spinal cord. The notochord is present during early development and in a few cases it is retained through life; however, usually the notochord is replaced by the vertebral column.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000327", ontology="AAO", source="AAO:LAP"} property_value: has_relational_adjective "notochordal" xsd:string property_value: homology_notes "(...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (3) a stiff, longitudinal rod of turgid cells along the dorsal part of the body that is called a notochord (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000199", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.28", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/wdahdul [Term] id: UBERON:0002346 @@ -22612,7 +22642,7 @@ xref: EHDAA:1498 xref: EHDAA:255 xref: EMAPA:16073 xref: EV:0100004 -xref: FBbt:00001057 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001057 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:87657 xref: MAT:0000176 xref: MIAA:0000176 @@ -22717,9 +22747,9 @@ synonym: "wriggler" NARROW [Wikipedia:Larva] synonym: "zoea" NARROW [Wikipedia:Larva] xref: AEO:0000126 xref: BTO:0000707 -xref: FBbt:00001727 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001727 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000459 -xref: MESH:D007814 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D007814 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: TAO:0002048 xref: Wikipedia:Larva is_a: UBERON:0000468 ! multicellular organism @@ -22789,7 +22819,7 @@ xref: EHDAA:346 xref: EHDAA:902 xref: EMAPA:35593 xref: FMA:293879 -xref: MESH:D054258 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D054258 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C34225 xref: neuronames:1362 xref: RETIRED_EHDAA2:0001252 @@ -22822,9 +22852,9 @@ synonym: "chrysalis" NARROW [NCBITaxon:37572, Wikipedia:Pupa] synonym: "pupae" RELATED OMO:0003004 [] xref: BTO:0001143 xref: EFO:0002684 -xref: FBbt:00002953 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00002953 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000886 -xref: MESH:D011679 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D011679 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: Wikipedia:Pupa is_a: UBERON:0000468 ! multicellular organism intersection_of: UBERON:0000468 ! multicellular organism @@ -22832,12 +22862,12 @@ intersection_of: existence_starts_and_ends_during UBERON:0000070 ! pupal stage relationship: existence_starts_and_ends_during UBERON:0000070 ! pupal stage relationship: has_quality PATO:0001187 ! pupal relationship: only_in_taxon NCBITaxon:33392 ! Endopterygota +property_value: dc:contributor https://github.com/ANiknejad +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/dosumis +property_value: dc:contributor https://github.com/fbastian +property_value: dc:contributor https://github.com/mmc46 property_value: has_relational_adjective "pupal" xsd:string -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/ANiknejad -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/dosumis -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/fbastian -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mmc46 [Term] id: UBERON:0003914 @@ -22848,7 +22878,7 @@ def: "Epithelial tubes transport gases, liquids and cells from one site to anoth synonym: "epithelial or endothelial tube" EXACT [] xref: AEO:0000114 xref: EHDAA2:0003114 -xref: FBbt:00007474 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007474 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000025 ! tube is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium @@ -23057,7 +23087,7 @@ synonym: "trilaminar disk" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "trilaminar germ" RELATED [https://orcid.org/0000-0002-6601-2165] xref: BILA:0000060 xref: BTO:0001403 -xref: FBbt:00005317 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005317 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:293108 xref: GAID:1302 xref: MESH:D005775 @@ -23144,7 +23174,7 @@ namespace: uberon def: "Anatomical structure that connects two or more adjacent skeletal elements or hardened body parts." [http://orcid.org/0000-0002-6601-2165] subset: grouping_class synonym: "joint" NARROW [] -xref: FBbt:00005811 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005811 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0034921 ! multi organ part structure relationship: part_of UBERON:0004770 ! articular system @@ -23160,7 +23190,7 @@ synonym: "gut section" RELATED [FBbt:00100315] synonym: "intestinal tract" RELATED [] synonym: "segment of intestinal tract" RELATED [] synonym: "subdivision of alimentary system" RELATED [FMA:71131] -xref: FBbt:00100315 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00100315 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:71131 is_a: UBERON:0013522 ! subdivision of tube intersection_of: UBERON:0013522 ! subdivision of tube @@ -23238,7 +23268,7 @@ synonym: "developmental tissue" RELATED [MIAA:0000019] xref: AEO:0000125 xref: CALOHA:TS-2122 xref: EHDAA2:0003125 -xref: FBbt:00007006 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007006 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:292313 xref: MIAA:0000019 is_a: UBERON:0000465 ! material anatomical entity @@ -23651,7 +23681,7 @@ subset: common_anatomy subset: upper_level synonym: "multicellular structure" EXACT [FBbt:00100313] xref: CARO:0010000 -xref: FBbt:00100313 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00100313 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000061 ! anatomical structure intersection_of: UBERON:0000061 ! anatomical structure intersection_of: has_quality PATO:0001993 ! multicellular @@ -23710,7 +23740,7 @@ def: "A subdivision of an anatomical system." [http://orcid.org/0000-0002-6601-2 subset: common_anatomy subset: human_reference_atlas subset: upper_level -xref: FBbt:00007330 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007330 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:67509 xref: SCTID:91690000 is_a: UBERON:0010000 {source="FBbt"} ! multicellular anatomical structure @@ -23948,9 +23978,9 @@ subset: life_stage synonym: "adulthood stage" RELATED [] is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000113 ! post-juvenile adult stage -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/ANiknejad -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/fbastian +property_value: dc:contributor https://github.com/ANiknejad +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/fbastian [Term] id: UBERON:0018378 @@ -23981,8 +24011,8 @@ def: "The stage of being no more dependent of the nest and/or from caregivers fo subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000112 ! sexually immature stage -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/ANiknejad -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/ANiknejad +property_value: dc:contributor https://github.com/cmungall [Term] id: UBERON:0034920 @@ -23994,8 +24024,8 @@ is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by UBERON:0007221 ! neonate stage relationship: only_in_taxon NCBITaxon:40674 ! Mammalia relationship: part_of UBERON:0018685 ! nursing stage -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/ANiknejad -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/ANiknejad +property_value: dc:contributor https://github.com/cmungall [Term] id: UBERON:0034921 diff --git a/uberon-base.owl b/uberon-base.owl index 556ae06d52..78c8f799de 100755 --- a/uberon-base.owl +++ b/uberon-base.owl @@ -15,7 +15,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + @@ -179,7 +179,7 @@ ZFA part_of NCBITaxon:7954 ZFS part_of NCBITaxon:7954 Aurelie Comte, Bill Bug, Catherine Leroy, Duncan Davidson and Trish Whetzel are also contributors. However their ORCIDs were not found. - 2024-05-13 + 2024-06-14 http://uberon.org @@ -911,6 +911,7 @@ brain name abbreviations (drosophila) + @@ -919,6 +920,7 @@ preferred term in the context of comparative anatomy + @@ -927,6 +929,7 @@ A historic synonym, no longer encouraged + @@ -935,6 +938,7 @@ developmental term + @@ -943,6 +947,7 @@ a synonym made on the basis of a possibly homologous structure in another species + @@ -951,6 +956,7 @@ preferred term when talking about an instance of this class in Homo sapiens + @@ -959,6 +965,7 @@ indicates that a synonym is used in an inconsistent or confusing way, typically between species + @@ -967,6 +974,7 @@ a mis-spelling that is in common use and thus recorded + @@ -975,6 +983,7 @@ synonym that is inappropriate for amniotes + @@ -983,6 +992,7 @@ synonym that is inappropriate for mammals + @@ -991,6 +1001,7 @@ expert consultation and attribution required + @@ -999,6 +1010,7 @@ taxonomic disambiguation + @@ -1007,6 +1019,7 @@ a systematic synonym used as the base name for design patterns + @@ -1015,6 +1028,7 @@ Classes tagged with this subset property were added upon request from the Human Cell Atlas (HCA). + @@ -1023,6 +1037,7 @@ Terms applicable across life, not restricted to Metazoa + @@ -1031,6 +1046,7 @@ CUMBO + @@ -1039,6 +1055,7 @@ cyclostome structures + @@ -1047,6 +1064,7 @@ brain region defined by cyto-architecture + @@ -1055,6 +1073,7 @@ classes that are defined by relative position counting from first in a series of elements along an axis in an individual organism rather than by strict homology + @@ -1063,6 +1082,7 @@ developmental_classification + @@ -1071,6 +1091,7 @@ Indicates that subclasses in AOs may be inappropriately linked + @@ -1079,6 +1100,7 @@ A class that represents an early developmental structure, like a blastocyst. This part of the ontology is undergoing review to remove inappropriate grouping classes. + @@ -1087,6 +1109,7 @@ EFO slim + @@ -1095,6 +1118,7 @@ derived from the union of EHDAA2 and EMAPA - still to be checked + @@ -1103,6 +1127,7 @@ subset of classes that have logical defs text defs and synonyms aligned with FEED + @@ -1111,6 +1136,7 @@ functional_classification + @@ -1119,6 +1145,7 @@ Subset consisting of classes creating for grouping purposes + @@ -1139,6 +1166,7 @@ A grouping class that depends on an assumption of homology between subclasses + @@ -1147,6 +1175,7 @@ + @@ -1155,6 +1184,7 @@ classes that have some inconsistency with FMA + @@ -1163,6 +1193,7 @@ + @@ -1171,6 +1202,7 @@ somewhat fuzzy grouping for analysis purposes, currently composed of something like: liver, heart, skeletal, kidney, bladder, brain, skin, mouth, esophagus, stomach, small intestine, large intestines, trachea nose, lungs, brain, spinal cord, peripheral nerves, kidneys, ureters, bladder, urethra, gonads + @@ -1179,6 +1211,7 @@ core classes typically found across metazoa. one purpose is to create a rough set of terms that could be used to start a new metazoan AO. Note this subset is not yet fully fleshed out + @@ -1187,6 +1220,7 @@ abstract class brought in to group ontology classes but not informative + @@ -1195,6 +1229,7 @@ organs, excluding individual muscles and skeletal elements + @@ -1203,6 +1238,7 @@ Phenotype slim + @@ -1211,6 +1247,7 @@ A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA + @@ -1219,6 +1256,7 @@ Uberon slim - subset that excludes obscure terms and deep compositional terms + @@ -1227,6 +1265,7 @@ Indicates that the class encompasses classes from other AOs that have not been verified + @@ -1235,6 +1274,7 @@ abstract upper-level terms not directly useful for analysis + @@ -1243,6 +1283,7 @@ core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO + @@ -1331,6 +1372,18 @@ + + + + + + + + + + + + @@ -2514,6 +2567,8 @@ + + carries uberon channel_for @@ -2525,6 +2580,7 @@ + uberon channels_from channels_from @@ -2535,6 +2591,7 @@ + uberon channels_into channels_into @@ -2548,6 +2605,7 @@ + x distally_connected_to y iff the distal part of x is connected to y. i.e. x connected_to y and x proximal_to y. uberon distally_connected_to @@ -2566,6 +2624,7 @@ + X extends_fibers into Y iff there exists some neuron (N) and N has_soma_location X and N 'has synaptic IO in region' some Y uberon extends_fibers_into @@ -2627,6 +2686,7 @@ + @@ -2737,6 +2797,7 @@ + uberon transitively_anteriorly_connected_to transitively anteriorly connected to @@ -2748,6 +2809,7 @@ + uberon transitively_connected_to transitively_connected to @@ -2758,6 +2820,7 @@ + uberon transitively_distally_connected_to transitively distally connected to @@ -2769,6 +2832,7 @@ + uberon transitively_proximally_connected_to transitively proximally connected to @@ -7111,7 +7175,8 @@ uterine cervix - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Uterus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.0/assets/VH_F_Uterus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.1/assets/VH_F_Uterus.glb @@ -9824,6 +9889,10 @@ lymph node https://github.com/obophenotype/uberon/issues/650 http://upload.wikimedia.org/wikipedia/commons/b/b8/Illu_lymph_node_structure.png + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-left/v1.0/assets/NIH_F_Lymph_Node_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-right/v1.0/assets/NIH_F_Lymph_Node_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb @@ -11697,8 +11766,12 @@ fornix of brain http://upload.wikimedia.org/wikipedia/commons/2/21/Gray747.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -12345,9 +12418,12 @@ large intestine - https://ccf-ontology.hubmapconsortium.org/objects/v1.0/SBU_F_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb @@ -13832,7 +13908,7 @@ male reproductive system - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb @@ -20191,7 +20267,7 @@ - UBERON:0000965 + 2009-04-18T01:37:39Z uberon UBERON:0000208 @@ -21094,7 +21170,7 @@ amnion http://upload.wikimedia.org/wikipedia/commons/e/e7/Gray14.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Placenta.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/placenta-full-term-female/v1.0/assets/VH_F_Placenta.glb @@ -23178,8 +23254,8 @@ BTO has def The multilamellar myelin membrane is a specisalised lipid-rich domain of the glial cell plasma membrane. FMA has primary term name Myelinated plasma membrane of Schwann cell - BTO:0000895 - FMA:73417 + + myelinated plasma membrane of Schwann cell uberon UBERON:0000346 @@ -24057,10 +24133,10 @@ - UBERON:0004757 - UBERON:0004758 - UBERON:0004759 - UBERON:0004760 + + + + uberon UBERON:0000360 obsolete rectal gland @@ -24212,10 +24288,18 @@ Note that 'renal medulla' is not synonymous with 'medullary region of kidney'. The former is composed of kidney pyramids only, while the latter covers kidney pyramids and renal columns, which are histologically different. renal medulla - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.2/assets/VH_F_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.2/assets/VH_F_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb https://upload.wikimedia.org/wikipedia/commons/6/69/Illu_kidney.jpg @@ -24399,7 +24483,7 @@ - FMA:76787 + BTO:0001192 Rootlets Rootlets set @@ -25886,8 +25970,8 @@ - EFO:0001015 - FMA:75430 + + BTO:0001400 uberon UBERON:0000380 @@ -26231,8 +26315,8 @@ - FMA:71613 - HAO:0000449 + + BTO:0001548 Labial glands Labial glands set @@ -28568,7 +28652,7 @@ - NCIT:C38575 + uberon UBERON:0000427 obsolete cytotrophoblastic cell @@ -29111,6 +29195,7 @@ Nerve cell nuclei situated ventrally in the intermediate hypothalamic region, mainly in the lateral hypothalamic area. + LTu BAMS:LTu BIRNLEX:1206 @@ -29131,6 +29216,7 @@ nucleus tuberis hypothalami nucleus tuberis lateralis UBERON:0000435 + The lateral tuberal nucleus is specific to humans and higher primates, however, this term is sometimes used loosely. If using for rodents, please use tuberal nucleus (sensu Rodentia) instead. If refering to the nucleus lateralis tuberis of fish, please use nucleus lateralis tuberis system (sensu Teleostei) lateral tuberal nucleus @@ -29276,7 +29362,7 @@ - FMA:77761 + Arachnoid trabeculae set trabeculae arachnoideae uberon @@ -29830,11 +29916,11 @@ - CL:2000002 - BTO:0002770 - FMA:86480 - NCIT:C32429 - UMLS:C1511740 + + + + + Wikipedia:Decidual_cells uberon UBERON:0000449 @@ -29844,7 +29930,7 @@ - UMLS:C1511740 + ncithesaurus:Decidual_Cell @@ -31104,18 +31190,18 @@ Anatomical structure that is a direct part of the cell. TODO - move metadata to GO and obsolete this class once homes have been found for existing children. Note the inconsistency between the usage of the label 'cell component' in GO and CARO - AAO:0010271 - BILA:0000014 - CARO:0000014 - FBbt:00007012 - FMA:86454 - GO:0044464 - HAO:0000014 - NCIT:C34070 - NIF_Subcellular:sao-1337158144 - OpenCyc:Mx4rwQwkcZwpEbGdrcN5Y29ycA - TGMA:0001834 - UMLS:C1178969 + + + + + + + + + + + + uberon cell component UBERON:0000470 @@ -31133,7 +31219,7 @@ - UMLS:C1178969 + ncithesaurus:Cell_Part @@ -32759,8 +32845,11 @@ ileocecal valve http://upload.wikimedia.org/wikipedia/commons/f/fc/Gray1075.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb @@ -33553,10 +33642,10 @@ - FBbt:00000021 - HAO:0000016 - SPD:0000055 - UBERON:0002417 + + + + segment of abdomen uberon UBERON:0000917 @@ -33576,12 +33665,12 @@ The nutritive substance contained in the egg. - BTO:0000371 - FBbt:00000035 - GO:0060417 - UBERON:0007378 - XAO:0000281 - ZFA:0000084 + + + + + + vegetal yolk mass MAT:0000335 MIAA:0000335 @@ -33603,9 +33692,9 @@ - GO:0005811 - FMA:62962 - GO:0005811 + + + uberon UBERON:0000919 obsolete lipid droplet @@ -33682,10 +33771,10 @@ It is the nucleus of a sperm or an egg cell during the process of fertilization. - GO:0045120 - FBbt:00000048 - FMA:84673 - GO:0045120 + + + + Wikipedia:Pronucleus uberon UBERON:0000921 @@ -34295,9 +34384,9 @@ - FBbt:00000154 - MAT:0000244 - MIAA:0000244 + + + segment - embryonic uberon UBERON:0000928 @@ -34687,8 +34776,8 @@ - FBbt:00000482 - WBbt:0005814 + + uberon UBERON:0000932 originally unified on basis of terminological similarity @@ -34949,8 +35038,12 @@ anterior commissure http://upload.wikimedia.org/wikipedia/commons/b/b4/Gray744.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -35192,8 +35285,8 @@ - FBbt:00001135 - ZFA:0000068 + + uberon proneural clusters UBERON:0000937 @@ -35512,6 +35605,7 @@ The frontal nerve is the largest branch of the ophthalmic, and may be regarded, both from its size and direction, as the continuation of the nerve. It enters the orbit through the supraorbital foramen, and runs forward between the Levator palpebræ superioris and the periosteum. Midway between the apex and base of the orbit it divides into two branches, supratrochlear nerve and supraorbital nerve. [WP,unvetted]. + FMA:52638 NCIT:C32638 SCTID:280219004 @@ -35521,6 +35615,7 @@ uberon nervus frontalis UBERON:0000942 + frontal nerve (branch of ophthalmic) http://upload.wikimedia.org/wikipedia/commons/4/45/Gray787.png @@ -35566,8 +35661,8 @@ - FBbt:00002721 - WBbt:0005107 + + uberon UBERON:0000943 obsolete labial sensillum @@ -35579,8 +35674,8 @@ - FBbt:00003051 - FMA:76733 + + dorsal vein ramus dorsalis uberon @@ -35932,8 +36027,12 @@ aorta - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb https://upload.wikimedia.org/wikipedia/commons/9/91/Aorta_scheme.jpg @@ -36102,9 +36201,12 @@ Taxon notes:" the ascidian tube-like heart lacks chambers....The ascidian heart is formed after metamorphosis as a simple tube-like structure with a single-layered myoepithelium that is continuous with a single-layered pericar- dial wall. It lacks chambers and endocardium.... The innovation of the chambered heart was a key event in vertebrate evolution, because the chambered heart generates one-way blood flow with high pressure, a critical requirement for the efficient blood supply of large-body vertebrates... all extant vertebrates have hearts with two or more chambers (Moorman and Christoffels 2003)" DOI:10.1101/gad.1485706 heart - https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb @@ -36440,8 +36542,8 @@ - UBERON:0011144 - UBERON:0011145 + + uberon UBERON:0000952 obsoleted as it conflated a generic functional grouping with a specific group of muscles in the leg/hip @@ -36477,8 +36579,8 @@ Intestinal muscle cell, attach to intestine and body wall anterior to anus. - FBbt:00003537 - WBbt:0005796 + + intestinal muscle uberon UBERON:0000954 @@ -36585,8 +36687,14 @@ brain - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.0/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.0/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -37070,6 +37178,7 @@ optic chiasma http://upload.wikimedia.org/wikipedia/commons/b/b3/1543%2CVisalius%27OpticChiasma.jpg + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb @@ -37158,9 +37267,9 @@ OBSOLETE. Original definition: The pharyngeal nerve (pterygopalatine nerve) is a small branch arising from the posterior part of the pterygopalatine ganglion. It passes through the pharyngeal canal with the pharyngeal branch of the maxillary artery, and is distributed to the mucous membrane of the nasal part of the pharynx, behind the auditory tube. [WP,unvetted]. - FBbt:00004021 - FMA:77524 - WBbt:0005441 + + + Wikipedia:Pharyngeal_nerve uberon UBERON:0000960 @@ -37294,6 +37403,7 @@ The cervical nerves are the spinal nerves from the cervical vertebrae. Although there are seven cervical vertebrae (C1-C7), there are eight cervical nerves (C1-C8). All nerves except C8 emerge above their corresponding vertebrae, while the C8 nerve emerges below the C7 vertebra. (In the other portions of the spine, the nerve emerges below the vertebra with the same name. Dorsal (posterior) distribution includes the greater occipital (C2) and third occipital (C3). Ventral (anterior) distribution includes the cervical plexus (C1-C4) and brachial plexus (C5-C8) [WP,unvetted]. + BAMS:cern FMA:5859 NCIT:C32299 @@ -37308,6 +37418,7 @@ nervus cervicalis uberon UBERON:0000962 + Innervates: sternohyoid muscle, sternothyroid muscle, omohyoid muscle[WP] nerve of cervical vertebra @@ -37853,9 +37964,9 @@ - FBbt:00004245 - MAT:0000205 - MIAA:0000205 + + + arthropod sensillum of thorax sensillum of thorax thoracic sensillum @@ -37896,9 +38007,9 @@ - FBbt:00004461 - MAT:0000206 - MIAA:0000206 + + + abdomen arthropod sensillum abdomen sensillum abdominal sensillum @@ -40679,7 +40790,8 @@ uterus http://upload.wikimedia.org/wikipedia/commons/6/6a/Female_reproductive_system_lateral_nolabel.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Uterus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.0/assets/VH_F_Uterus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.1/assets/VH_F_Uterus.glb https://upload.wikimedia.org/wikipedia/commons/c/cb/Female_anatomy.png @@ -41049,7 +41161,8 @@ seminal vesicle http://upload.wikimedia.org/wikipedia/commons/d/d1/Male_anatomy_en.svg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb @@ -41214,7 +41327,8 @@ ejaculatory duct - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb https://upload.wikimedia.org/wikipedia/commons/3/35/Male_anatomy.png @@ -41729,11 +41843,12 @@ respiratory system http://upload.wikimedia.org/wikipedia/commons/5/5e/Respiratory_system_complete_en.svg - https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.0/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb @@ -41850,10 +41965,10 @@ OBSOLETE: The mostly slit-like opening on the body surface through which air is taken into the respiratory system. - FBbt:00005054 - HAO:0000950 - TGMA:0000578 - UBERON:0010019 + + + + EFO:0000936 MAT:0000208 MIAA:0000208 @@ -42622,7 +42737,7 @@ - UBERON:0003917 + fat pad uberon UBERON:0001014 @@ -43423,10 +43538,10 @@ - FBbt:00005107 - FMA:67301 - GO:0043025 - NIF_Subcellular:sao1044911821 + + + + uberon UBERON:0001022 obsolete cell body @@ -43440,16 +43555,16 @@ The region of a neuron receiving inputs from other neurons, typically a slender neurite, often branched. In insect neurons, this is often not a clear designation and often presynaptic sites co-extend with postsynaptic ones. dendritic - FBbt:00005110 - FMA:67314 - GAID:749 - GO:0030425 - MESH:A08.663.256 - NCIT:C32447 - NIF_Subcellular:sao1211023249 - OpenCyc:Mx4rviIdspwpEbGdrcN5Y29ycA - TGMA:0001373 - UMLS:C0011305 + + + + + + + + + + Wikipedia:Dendrite uberon UBERON:0001023 @@ -43472,12 +43587,12 @@ One of the processes or extensions of a neuron, axon or dendrite or cell body fiber. // Cell appendage of the neuron which includes the axon and the dendrite. - FBbt:00005113 - FMA:61814 - GAID:751 - GO:0043005 - MESH:A08.663.256.500 - NIF_Subcellular:sao-867568886 + + + + + + Wikipedia:Neurite uberon UBERON:0001024 @@ -43501,15 +43616,15 @@ The structural contact that is the site of transmission between neurons, identified by a presynaptic ribbon and synaptic vesicles as the input element and one or (usually) more postsynaptic elements with various specializations (membrane densities, cisternae, etc.). synaptic - FBbt:00005114 - FMA:67408 - GAID:766 - GO:0045202 - MESH:A08.850 - NCIT:C13281 - NIF_Subcellular:sao914572699 - SCTID:362298009 - UMLS:C0039062 + + + + + + + + + Wikipedia:Synapse synaptic junction uberon @@ -43533,7 +43648,7 @@ A motor nerve is an efferent nerve that exclusively contains the axons of somatic and branchial motoneurons, which innervate skeletal muscles (that ensure locomotion) and branchial muscles (that motorize the face and neck)[WP]. - UBERON:0006798 + Wikipedia:Motor_nerve nervus motorius uberon @@ -43697,12 +43812,12 @@ - GO:0031594 - FBbt:00005142 - FMA:61803 - GAID:809 - MESH:D009469 - NIF_Subcellular:sao1124888485 + + + + + + Wikipedia:Neuromuscular_junction uberon junctio neuromuscularis @@ -43732,10 +43847,10 @@ - FBbt:00005143 - FMA:67107 - GO:0048788 - NIF_Subcellular:sao1884931180 + + + + ribbon synapse uberon UBERON:0001030 @@ -44056,10 +44171,10 @@ Can refer to a light sensitive organ, a photoreceptor cell or a photoreceptor protein. This class was made obsolete because it was ambiguous. - CL:0000210 - FBbt:00005162 - FMA:85613 - GAID:778 + + + + BTO:0001060 Wikipedia:Photoreceptor uberon @@ -45397,8 +45512,8 @@ - FMA:85574 - UBERON:0002081 + + uberon UBERON:0001050 obsoleted because 'atrium' as a general grouping class that encompasses the cardiac atrium and atrium of alveolus atrium is of questionable value. Furthermore, the use of the term 'atrium' in the generic sense is misleading, as this is commonly used to refer specifically to the cardiac atrium @@ -45566,8 +45681,12 @@ rectum http://upload.wikimedia.org/wikipedia/commons/7/75/Anorectum.gif - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb @@ -45759,8 +45878,8 @@ - UBERON:0000056 - UBERON:0000057 + + uberon UBERON:0001055 obsolete ureter @@ -46779,8 +46898,12 @@ head of pancreas http://upload.wikimedia.org/wikipedia/commons/f/fe/Illu_pancreas_duodenum.jpg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pancreas.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pancreas.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.0/assets/VH_F_Pancreas.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.1/assets/VH_F_Pancreas.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.2/assets/3d-vh-f-pancreas.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.0/assets/VH_M_Pancreas.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.1/assets/VH_M_Pancreas.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.2/assets/3d-vh-m-pancreas.glb @@ -47047,7 +47170,6 @@ XAO:0000388 galen:InferiorVenaCava inferior caval vein - inferior vena cava posterior vena cava uberon caudal vena cava @@ -47057,7 +47179,7 @@ - posterior vena cava + inferior vena cava http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray577.png @@ -47101,17 +47223,11 @@ inferior caval vein http://orcid.org/0000-0002-6601-2165 - - - - inferior vena cava - Wikipedia:Venae_cavae - posterior vena cava - Wikipedia:Venae_cavae + PMID:21154280 @@ -47208,14 +47324,14 @@ - + - + @@ -47256,11 +47372,11 @@ pericardial cavity - + - + @@ -47273,13 +47389,13 @@ - + FMA - + Wikipedia @@ -47973,7 +48089,7 @@ - + @@ -48005,14 +48121,14 @@ endocardium of ventricle - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -48150,7 +48266,7 @@ - + @@ -48178,14 +48294,14 @@ myocardium of ventricle - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -48386,8 +48502,8 @@ - UBERON:0010996 - UBERON:0011002 + + uberon UBERON:0001086 obsoleted as it conflated two distinct classes @@ -48666,9 +48782,9 @@ - - - + + + Skeletal element within the mouth (or in some species, upper part of the digestive tract) that is composed of dentine and is used in procuring or masticating food. @@ -48711,34 +48827,34 @@ calcareous tooth http://upload.wikimedia.org/wikipedia/commons/1/14/Teeth_by_David_Shankbone.jpg - + - + - + - + XAO-modified - + ZFA-modified - + cjm @@ -48901,7 +49017,7 @@ - + The second vertebral bone in the vertebral column. Vertebra that is posteriorly adjacent to vertebra 1.[TAO] @@ -48937,14 +49053,14 @@ vertebral bone 2 - + - + FMA @@ -49474,8 +49590,8 @@ - - + + The Pectoralis minor is a thin, triangular muscle, situated at the upper part of the chest, beneath the Pectoralis major. [WP,unvetted]. EHDAA2:0001425 @@ -49501,11 +49617,11 @@ pectoralis minor https://upload.wikimedia.org/wikipedia/commons/5/5d/Pectoralis_minor.png - + - + @@ -49518,14 +49634,14 @@ - + third to fifth ribs near their costal cartilages dbpedia - + medial border and superior surface of the coracoid process of the scapula dbpedia @@ -49567,7 +49683,7 @@ - + The external jugular vein receives the greater part of the blood from the exterior of the cranium and the deep parts of the face, being formed by the junction of the posterior division of the posterior facial with the posterior auricular vein. [WP,unvetted]. Vein which collects blood from the muscles of the head and tongue and the thyroid gland.[AAO] @@ -49593,14 +49709,14 @@ external jugular vein http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png - + - + FMA @@ -49740,8 +49856,8 @@ - - + + A thin musculomebranous barrier that separates the abdominal and thoracic cavities. Often used for breathing control. The diaphragm is a skeletal muscle that is responsible for contraction and expansion of the lungs[GO]. @@ -49781,24 +49897,24 @@ diaphragm - + - + - + PMID:23586979 - + definitional @@ -49860,8 +49976,8 @@ - - + + The anterior jugular vein begins near the hyoid bone by the confluence of several superficial veins from the submaxillary region. It descends between the median line and the anterior border of the Sternocleidomastoideus, and, at the lower part of the neck, passes beneath that muscle to open into the termination of the external jugular, or, in some instances, into the subclavian vein. It varies considerably in size, bearing usually an inverse proportion to the external jugular; most frequently there are two anterior jugulars, a right and left; but sometimes only one. Its tributaries are some laryngeal veins, and occasionally a small thyroid vein. Just above the sternum the two anterior jugular veins communicate by a transverse trunk, the venous jugular arch, which receive tributaries from the inferior thyroid veins; each also communicates with the internal jugular. There are no valves in this vein. [WP,unvetted]. @@ -49881,24 +49997,24 @@ anterior jugular vein http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray558.png - + - + - + Wikipedia - + FMA Wikipedia @@ -49948,8 +50064,8 @@ - - + + A paired dermal or endochondral bone that is part of the pectoral girdle. The clavicle may be in contact with the interclavicle or coracoid and forms an attachment site for pectoral musculature. [PHENOSCAPE:ad]. Slender, paired bones of intramembranous origin that invest the anterior margins of the procoracoids.[AAO] @@ -49985,11 +50101,11 @@ clavicle bone https://upload.wikimedia.org/wikipedia/commons/5/59/Pectoral_girdles-en.svg - + - + @@ -50002,14 +50118,14 @@ - + mah ISBN:978-0-12-319060-4 - + from secondary cartilage of fusion ISBN:978-0-12-319060-4 @@ -50085,8 +50201,8 @@ - - + + A superficial vein of the upper limb that communicates with the basilic vein via the median cubital vein at the elbow and is located in the superficial fascia along the anterolateral surface of the biceps brachii muscle. Superiorly the cephalic vein passes between the deltoid and pectoralis major muscles and through the deltopectoral triangle, where it empties into the axillary vein. It is often visible through the skin, and its location in the deltopectoral groove is fairly consistent, making this site a good candidate for cannulation. It is often referred to as the 'House-man's Friend' for this reason and is generally a good place for cannulaton when a large bore cannula needs to be sited. [WP,modified]. EMAPA:25075 @@ -50107,24 +50223,24 @@ cephalic vein http://upload.wikimedia.org/wikipedia/commons/b/ba/Gray574.png - + - + - + FMA/obol - + FMA/obol @@ -50161,9 +50277,9 @@ - - - + + + The sternohyoid muscle is a thin, narrow muscle attaching the hyoid bone to the sternum, one of the paired strap muscles of the infrahyoid muscles serving to depress the hyoid bone. It is innervated by the ansa cervicalis. The muscle arises from the posterior border of the medial end of the clavicle, the posterior sternoclavicular ligament, and the upper and posterior part of the manubrium sterni. Passing upward and medially, it is inserted by short tendinous fibers into the lower border of the body of the hyoid bone. [WP,unvetted]. The sternohyoid is a somitic muscle that participates in oral/pharyngeal behaviors and is innervated by the cervical plexus; it attaches to the hyoid appratus and the sternum.[FEED] @@ -50190,15 +50306,15 @@ sternohyoid muscle https://upload.wikimedia.org/wikipedia/commons/6/67/Sternohyoid_muscle.PNG - + - + - + @@ -50211,21 +50327,21 @@ - + inferred dbpedia - + manubrium of sternum dbpedia - + dbpedia @@ -50293,8 +50409,8 @@ - - + + The omohyoid muscle is a muscle at the front of the neck that consists of two bellies separated by an intermediate tendon. It belongs to the group of infrahyoid muscles. [WP,unvetted]. The omohyoid is a somitic muscle that participates in oral/pharyngeal behaviors and is innervated by the cervical plexus; it attaches to the hyoid appratus and the scapula.[FEED] @@ -50317,11 +50433,11 @@ omohyoid muscle http://upload.wikimedia.org/wikipedia/commons/b/b0/Gray1210.png - + - + @@ -50334,14 +50450,14 @@ - + inferred dbpedia - + dbpedia @@ -50396,9 +50512,9 @@ - - - + + + The Sternothyreoideus (or Sternothyroid muscle) is shorter and wider than the Sternohyoideus, beneath which it is situated. It arises from the posterior surface of the manubrium sterni, below the origin of the Sternohyoideus, and from the edge of the cartilage of the first rib, and sometimes that of the second rib, it is inserted into the oblique line on the lamina of the thyroid cartilage. This muscle is in close contact with its fellow at the lower part of the neck, but diverges somewhat as it ascends; it is occasionally traversed by a transverse or oblique tendinous inscription. [WP,unvetted]. The sternothyroid is a somitic muscle that participates in oral/pharyngeal behaviors and is innervated by the cervical plexus; it attaches to the thyroid cartilage and the sternum.[FEED] @@ -50423,15 +50539,15 @@ sternothyroid muscle http://upload.wikimedia.org/wikipedia/commons/1/10/Sternothyroideus.png - + - + - + @@ -50444,20 +50560,20 @@ - + inferred dbpedia - + dbpedia - + dbpedia @@ -50519,9 +50635,9 @@ - - - + + + The thyrohyoid muscle is a small, quadrilateral muscle appearing like an upward continuation of the Sternothyreoideus. It belongs to the infrahyoid muscles group. It arises from the oblique line on the lamina of the thyroid cartilage, and is inserted into the lower border of the greater cornu of the hyoid bone. [WP,unvetted]. The thyrohyoid is a somitic muscle that participates in oral/pharyngeal behaviors and is innervated by C1 and Cranial Nerve XII ; it attaches to the thyroid cartilage and the hyoid apparatus.[FEED] @@ -50544,15 +50660,15 @@ thyrohyoid muscle https://upload.wikimedia.org/wikipedia/commons/a/aa/Thyrohyoid_muscle.PNG - + - + - + @@ -50565,21 +50681,21 @@ - + first cervical nerve via hypoglossal nerve dbpedia - + first cervical nerve via hypoglossal nerve dbpedia - + dbpedia @@ -50647,8 +50763,8 @@ - - + + @@ -50660,10 +50776,10 @@ - - - - + + + + The respiratory muscles that arise from the lower border of one rib and insert into the upper border of the adjoining rib. Inspiration by active expansion of the thorax evolved later, in the ancestor of reptiles, birds, and mammals. This was powered originally by the intercostal muscles (as in lizards or crocodilians) and later (in mammals only) by a muscular diaphragm.[well established][VHOG] BTO:0005281 @@ -50693,45 +50809,45 @@ intercostal muscle http://upload.wikimedia.org/wikipedia/commons/f/f2/Gray411.png - + - + - + - + - + dbpedia - + EHDAA2 - + ribs 1-11 dbpedia - + ribs 2-12 dbpedia @@ -50776,18 +50892,18 @@ - - + + - - - - + + + + The latissimus dorsi is the larger, flat, dorso-lateral muscle on the trunk, posterior to the arm, and partly covered by the trapezius on its median dorsal region. [WP,unvetted]. In humans it inserts along a roughened line deep in the groove. In other mammals (most, I believe) it is an actual projection, the latissimus dorsi process [FEED:rd] [https://github.com/obophenotype/uberon/issues/1192] @@ -50817,66 +50933,66 @@ latissimus dorsi muscle https://upload.wikimedia.org/wikipedia/commons/7/7d/Latissimus_dorsi.png - + - + - + - + - + - + - + EHDAA2 - + EHDAA2 - + spinous processes of thoracic T7-T12 thoracolumbar fascia iliac crest and inferior 3 or 4 ribs inferior angle of scapula dbpedia - + floor of intertubercular groove of the humerus dbpedia - + dbpedia - + dbpedia @@ -50987,8 +51103,10 @@ right lobe of liver http://upload.wikimedia.org/wikipedia/commons/a/a3/Gray1087-liver.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb @@ -51087,8 +51205,10 @@ left lobe of liver http://upload.wikimedia.org/wikipedia/commons/a/a3/Gray1087-liver.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb @@ -51157,8 +51277,10 @@ quadrate lobe of liver http://upload.wikimedia.org/wikipedia/commons/a/a3/Gray1087-liver.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb @@ -51197,7 +51319,7 @@ - + The caudate lobe (posterior hepatic segment I, Spigelian lobe) is situated upon the postero-superior surface of the liver on the right lobe of the liver, opposite the tenth and eleventh thoracic vertebrae. It is bounded on the left side by the physiological division of the liver called the ligamentum venosum. It is bounded, below, by the porta; on the right, by the fossa for the inferior vena cava; and, on the left, by the fossa for the ductus venosus. It looks backward, being nearly vertical in position; it is longer from above downward than from side to side, and is somewhat concave in the transverse direction. The caudate process is a small elevation of the hepatic substance extending obliquely and laterally, from the lower extremity of the caudate lobe to the under surface of the right lobe. It is situated behind the porta, and separates the fossa for the gall-bladder from the commencement of the fossa for the inferior vena cava. Budd-Chiari syndrome, caused by occlusion of hepatic venous outflow, can lead to hypertrophy of the caudate lobe due to its own caval anastomosis that allows for continued function of this lobe of the liver. [WP,unvetted]. Check left vs right in mouse and human The portion of the right lobe of the liver between the fissure of the ligamentum venosum and the bare area of the liver. It ends into the superior recess of the lesser peritoneal sac. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] @@ -51232,10 +51354,12 @@ caudate lobe of liver http://upload.wikimedia.org/wikipedia/commons/a/a3/Gray1087-liver.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb - + @@ -51248,7 +51372,7 @@ - + FMA @@ -51351,7 +51475,7 @@ - + A lobe of tissue that is part of a thyroid gland. Thus, a thyroid capable of forming iodotyrosines and iodothyronines is present in all vertebrates. (...) Certain morphologic changes occur after the biochemical evolution of the thyroid has ceased. In the adult lamprey and in most bony fishes, the gland is not encapsulated. (...) In cartilaginous fish, the thyroid is encapsulated. In the higher vertebrate forms, the thyroid is a one- or two-lobed encapsulated structure.[well established][VHOG] EHDAA2:0002032 @@ -51374,14 +51498,14 @@ lobe of thyroid gland http://upload.wikimedia.org/wikipedia/commons/9/9e/Gray1174.png - + - + FMA-abduced-lr @@ -51557,9 +51681,9 @@ - - - + + + The Longus colli muscle is a muscle of the human body. The Longus colli is situated on the anterior surface of the vertebral column, between the atlas and the third thoracic vertebra. It is broad in the middle, narrow and pointed at either end, and consists of three portions, a superior oblique, an inferior oblique, and a vertical. The superior oblique portion arises from the anterior tubercles of the transverse processes of the third, fourth, and fifth cervical vertebræ and, ascending obliquely with a medial inclination, is inserted by a narrow tendon into the tubercle on the anterior arch of the atlas. The inferior oblique portion, the smallest part of the muscle, arises from the front of the bodies of the first two or three thoracic vertebræ; and, ascending obliquely in a lateral direction, is inserted into the anterior tubercles of the transverse processes of the fifth and sixth cervical vertebræ. The vertical portion arises, below, from the front of the bodies of the upper three thoracic and lower three cervical vertebræ, and is inserted into the front of the bodies of the second, third, and fourth cervical vertebræ. [WP,unvetted]. EMAPA:37654 FMA:13370 @@ -51579,35 +51703,35 @@ longus colli muscle https://upload.wikimedia.org/wikipedia/commons/a/a6/Longus_colli.png - + - + - + - + FMA-modified - + Transverse processes of C-5 to T-3 dbpedia - + dbpedia @@ -51661,9 +51785,9 @@ - - - + + + The Scalenus medius, the largest and longest of the three scalene muscles, arises from the posterior tubercles of the transverse processes of the lower six cervical vertebræ. It descendes along the side of the vertebral column to insert by a broad attachment into the upper surface of the first rib, between the tubercle and the subclavian groove. The brachial plexus and the subclavian artery pass anterior to it. Because it elevates the upper ribs, the middle scalene muscle is also one of the accessory muscles of respiration. [WP,unvetted]. EMAPA:37738 @@ -51685,35 +51809,35 @@ scalenus medius https://upload.wikimedia.org/wikipedia/commons/f/fa/Scalenus_medius.png - + - + - + - + Ventral rami of the third to eighth cervical spinal nerves dbpedia - + dbpedia - + dbpedia @@ -51756,7 +51880,7 @@ - + The Scalenus posterior (Scalenus posticus), the smallest and most deeply seated of the three Scaleni, arises, by two or three separate tendons, from the posterior tubercles of the transverse processes of the lower two or three cervical vertebræ, and is inserted by a thin tendon into the outer surface of the second rib, behind the attachment of the serratus ventralis. It is occasionally blended with the Scalenus medius. [WP,unvetted]. EMAPA:37737 @@ -51777,14 +51901,14 @@ scalenus posterior https://upload.wikimedia.org/wikipedia/commons/f/f3/Scalenus_posterior.png - + - + transverse processes of C4 - C6 dbpedia @@ -51845,11 +51969,11 @@ - - - - - + + + + + The serratus ventralis is a muscle that originates on the surface of the upper eight or nine ribs at the side of the chest and inserts along the entire anterior length of the medial border of the scapula. [WP,unvetted]. EHDAA2:0001832 @@ -51876,57 +52000,57 @@ serratus ventralis https://upload.wikimedia.org/wikipedia/commons/c/c6/Serratus_anterior.png - + - + - + - + - + - + long thoracic nerve dbpedia - + EHDAA2 - + fleshy slips from the outer surface of upper 8 or 9 ribs dbpedia - + costal aspect of medial margin of the scapula dbpedia - + dbpedia @@ -51975,7 +52099,7 @@ - + The serratus dorsalis superior is a thin, quadrilateral muscle, situated at the upper and back part of the thorax. It arises by a thin and broad aponeurosis from the lower part of the ligamentum nuchae, from the spinous processes of the seventh cervical and upper two or three thoracic vertebræ and from the supraspinal ligament. Inclining downward and lateralward it becomes muscular, and is inserted, by four fleshy digitations, into the upper borders of the second, third, fourth, and fifth ribs, a little beyond their angles. [WP,unvetted]. EMAPA:37698 FMA:13401 @@ -51994,7 +52118,7 @@ serratus dorsalis superior muscle - + @@ -52007,7 +52131,7 @@ - + C7 thru T3 in human dbpedia @@ -52054,7 +52178,7 @@ - + A muscle that originates from the vertebrae and inserts in the ribs. EMAPA:37697 FMA:13402 @@ -52075,7 +52199,7 @@ serratus dorsalis inferior muscle https://upload.wikimedia.org/wikipedia/commons/a/aa/Serratus_posterior.PNG - + @@ -52088,7 +52212,7 @@ - + T11 through L2 in human dbpedia @@ -52137,14 +52261,14 @@ - + - + A paired muscle in the superficial layers of the anterior portion of the neck. It acts to flex and rotate the head. It also acts as an accessory muscle of inspiration, along with the scalene muscles of the neck. [WP,unvetted]. TODO: sternocleidomastoid = sternomastoid + Cleidomastoideus. Origin: from manubrium sterni (sterno) and clavicle (cleido) and it's insertion at the mastoid process of the temporal bone. @@ -52183,25 +52307,25 @@ http://upload.wikimedia.org/wikipedia/commons/6/61/Gray512.png http://upload.wikimedia.org/wikipedia/commons/f/f9/Gray512.svg - + - + - + sensory: cervical plexus dbpedia - + manubrium sterni medial portion of the clavicle dbpedia @@ -52322,8 +52446,8 @@ - - + + @@ -52336,7 +52460,7 @@ - + The subscapularis is a large triangular muscle which fills the subscapular fossa and inserts into the lesser tubercle of the humerus and the front of the capsule of the shoulder-joint. [WP,unvetted]. EHDAA2:0001943 @@ -52361,34 +52485,34 @@ http://upload.wikimedia.org/wikipedia/commons/f/f2/Gray411.png - + - + - + - + Wikipedia - + EHDAA2 - + lesser tubercle of humerus dbpedia @@ -52442,7 +52566,7 @@ - + @@ -52508,14 +52632,14 @@ vertebral column - + - + cjm @@ -52701,14 +52825,14 @@ - + - + The parathyroid gland is an endocrine gland for secretion of parathyroid hormone, usually found as a pair, embedded in the connective tissue capsule on the posterior surface of the thyroid gland. Parathyroid regulates calcium and phosphorous metabolism. Any one of several small structures, usually four, attached to the dorsal surfaces of the lateral lobes of the thyroid gland. [TFD][VHOG] Either of the two pairs of small, spherical, encapsulated glands which develop from ventral growths of the third and fourth pharyngeal pouches and are closely associated with the external jugular veins. Calcitonin and parathyroid hormone are secreted by these glands.[AAO] @@ -52744,24 +52868,24 @@ parathyroid gland - + - + - + PMID:16313389 - + Wikipedia @@ -53322,7 +53446,7 @@ - + Simple squamous epithelium of mesodermal origin which lines serous membranes. Examples: mesothelium of pleura, mesothelium of peritoneum[FMA]. Wikipedia: The mesothelium is a membrane that forms the lining of several body cavities: the pleura (thoracal cavity), peritoneum (abdominal cavity including the mesentery) and pericardium (heart sac). Mesothelial tissue also surrounds the male internal reproductive organs (the tunica vaginalis testis) and covers the internal reproductive organs of women (the tunica serosa uteri). AEO:0000111 BTO:0002422 @@ -53347,14 +53471,14 @@ mesothelium http://upload.wikimedia.org/wikipedia/commons/2/25/Mesothelium_peritoneal_wash_high_mag.jpg - + - + FMA @@ -53469,7 +53593,7 @@ - + In anatomy, the superior mesenteric vein (SMV) is a blood vessel that drains blood from the small intestine. At its termination behind the neck of the pancreas, the SMV combines with the splenic vein to form the hepatic portal vein. The SMV lies to the right of the similarly named artery, the superior mesenteric artery, which originates from the abdominal aorta. [WP,unvetted]. BTO:0002783 @@ -53491,15 +53615,18 @@ superior mesenteric vein http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb - + - + Wikipedia:Vitelline_vein @@ -53535,7 +53662,7 @@ - + A vein that drains the pelvis and lower limbs into the inferior vena cava. In human anatomy, the common iliac veins are formed by the external iliac veins and internal iliac veins and together, in the abdomen at the level of the fifth lumbar vertebrae, form the inferior vena cava. They drain blood from the pelvis and lower limbs. Both common iliac veins are accompanied along their course by common iliac arteries. @@ -53554,11 +53681,14 @@ common iliac vein - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb https://upload.wikimedia.org/wikipedia/commons/6/65/Iliac_veins.gif - + @@ -53571,7 +53701,7 @@ - + FMA-abduced-lr @@ -53658,8 +53788,11 @@ renal vein http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1122.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb @@ -53744,8 +53877,11 @@ right renal vein - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb @@ -53810,8 +53946,11 @@ left renal vein http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1122.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb @@ -53868,7 +54007,7 @@ - + Vein that carries blood away from the liver[ZFA]. todo - add developmental relationships for other taxa @@ -53899,14 +54038,14 @@ hepatic vein http://upload.wikimedia.org/wikipedia/commons/6/61/Gray1121.png - + - + FMA-abduced-lr @@ -54396,8 +54535,10 @@ hepatic bare area UBERON:0001149 bare area of liver - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb @@ -54459,8 +54600,12 @@ body of pancreas http://upload.wikimedia.org/wikipedia/commons/f/fe/Illu_pancreas_duodenum.jpg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pancreas.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pancreas.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.0/assets/VH_F_Pancreas.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.1/assets/VH_F_Pancreas.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.2/assets/3d-vh-f-pancreas.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.0/assets/VH_M_Pancreas.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.1/assets/VH_M_Pancreas.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.2/assets/3d-vh-m-pancreas.glb @@ -54499,8 +54644,8 @@ - - + + The tail of the pancreas, located anatomically left near the hilum of the spleen, is not simply an anatomical distinction. The tail is the only part of the pancreas which contains Pancreatic Polypeptide (PP) cells, which are responsible for secreting pancreatic polypeptide to coordinate exocrine and islet enzyme release. PP cells are found in the tail's periphery. Beta cells and delta cells are found in the central part of the tail as with the rest of the pancreas. The cells described above are located exclusively in the islet cells; their secretions reach exocrine portions of the pancreas via the capillary network surrounding the islet cell populations. [WP,unvetted]. Hagfish and lampreys may have one or more endocrine buds - and later the vertebrate pancreas develop as independent ventral and dorsal buds that eventually fuse to become one organ.[well established][VHOG] @@ -54523,27 +54668,31 @@ tail of pancreas http://upload.wikimedia.org/wikipedia/commons/f/fe/Illu_pancreas_duodenum.jpg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pancreas.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pancreas.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.0/assets/VH_F_Pancreas.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.1/assets/VH_F_Pancreas.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.2/assets/3d-vh-f-pancreas.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.0/assets/VH_M_Pancreas.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.1/assets/VH_M_Pancreas.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.2/assets/3d-vh-m-pancreas.glb - + - + - + FMA - + EHDAA2 @@ -54621,7 +54770,7 @@ - + @@ -54657,7 +54806,7 @@ http://upload.wikimedia.org/wikipedia/commons/4/48/Illu_liver_gallbladder.jpg http://upload.wikimedia.org/wikipedia/commons/5/5d/Digestive_system_showing_bile_duct.png - + @@ -54670,7 +54819,7 @@ - + EHDAA2 @@ -54718,15 +54867,15 @@ - - + + - + @@ -54774,37 +54923,41 @@ Taxon notes: in some herbivorous lizards, a cecum is present between small and large intestines[Kardong] caecum http://upload.wikimedia.org/wikipedia/commons/8/82/Stomach_colon_rectum_diagram.svg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb - + - + - + - + EHDAA2 - + Wikipedia - + Wikipedia @@ -54894,8 +55047,8 @@ - - + + A blind-ended tube connected to the cecum, from which it develops embryologically[WP]. @@ -54937,27 +55090,31 @@ vermiform appendix http://upload.wikimedia.org/wikipedia/commons/a/ad/Gray536.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb - - + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb + + - + - + http://orcid.org/0000-0002-1572-1316 - + Wikipedia @@ -55023,7 +55180,7 @@ - + @@ -55078,7 +55235,7 @@ colon - + @@ -55092,7 +55249,7 @@ - + FMA @@ -55157,7 +55314,7 @@ - + Section of colon which is distal to the cecum and proximal to the transversecolon.[FMA,modified]. in MA, this is a subclass of colon @@ -55184,10 +55341,14 @@ ascending colon http://upload.wikimedia.org/wikipedia/commons/3/3b/Dickdarm-Schema.svg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb - - + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb + + @@ -55200,7 +55361,7 @@ - + Wikipedia @@ -55257,7 +55418,7 @@ - + The proximal-distal subdivision of colon that runs transversely across the upper part of the abdomen, from the right to the left colic flexure. Continuous with the descending colon[BTO,modified]. BTO:0000272 @@ -55282,10 +55443,14 @@ transverse colon http://upload.wikimedia.org/wikipedia/commons/3/3b/Dickdarm-Schema.svg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb - - + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb + + @@ -55298,7 +55463,7 @@ - + Wikipedia @@ -55342,7 +55507,7 @@ - + The portion of the colon between the left colic flexure and the sigmoid colon at the pelvic brim; the portion of the descending colon lying in the left iliac fossa is sometimes called the iliac colon. BTO:0000641 @@ -55367,10 +55532,14 @@ descending colon http://upload.wikimedia.org/wikipedia/commons/c/ca/Gray1223.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb - - + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb + + @@ -55383,7 +55552,7 @@ - + Wikipedia @@ -55426,7 +55595,7 @@ - + The part of the large intestine that is closest to the rectum and anus. It forms a loop that averages about 40 cm. in length, and normally lies within the pelvis, but on account of its freedom of movement it is liable to be displaced into the abdominal cavity. BTO:0000645 @@ -55455,10 +55624,14 @@ sigmoid colon http://upload.wikimedia.org/wikipedia/commons/3/3b/Dickdarm-Schema.svg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb - - + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb + + @@ -55471,7 +55644,7 @@ - + Wikipedia @@ -55714,7 +55887,7 @@ - + @@ -55751,14 +55924,14 @@ cardia of stomach https://upload.wikimedia.org/wikipedia/commons/3/33/Illu_stomach.jpg - + - + ISBN:0073040584 @@ -55914,7 +56087,7 @@ - + @@ -55968,7 +56141,7 @@ pyloric antrum http://upload.wikimedia.org/wikipedia/commons/3/31/Gray1046.svg - + @@ -55981,7 +56154,7 @@ - + Wikipedia @@ -56484,7 +56657,7 @@ - + @@ -56501,7 +56674,7 @@ portal lobule - + @@ -56514,7 +56687,7 @@ - + MA MP @@ -56538,7 +56711,7 @@ - + @@ -56564,14 +56737,14 @@ UBERON:0001172 hepatic acinus - + - + cjm @@ -56806,10 +56979,10 @@ - - - - + + + + @@ -56838,19 +57011,19 @@ common hepatic duct http://upload.wikimedia.org/wikipedia/commons/4/48/Illu_liver_gallbladder.jpg - + - + - + - + @@ -56863,25 +57036,25 @@ - + MA - + Wikipedia - + Wikipedia - + definitional @@ -57144,7 +57317,7 @@ - + @@ -57186,14 +57359,14 @@ peritoneal cavity - + - + Wikipedia @@ -57252,8 +57425,8 @@ - - + + classified as a cavity in EHDAA2, organ segment in FMA. We hedge and use a union UBERON:0006299 EHDAA2:0001958 @@ -57272,24 +57445,24 @@ UBERON:0001180 superior recess of lesser sac - + - + - + EMAPA - + EHDAA2 @@ -57466,8 +57639,11 @@ superior mesenteric artery http://upload.wikimedia.org/wikipedia/commons/6/68/Gray1099.png http://upload.wikimedia.org/wikipedia/commons/c/c0/Superior_mesenteric_a.gif - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb @@ -57560,8 +57736,11 @@ inferior mesenteric artery http://upload.wikimedia.org/wikipedia/commons/e/e4/Gray538.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb @@ -57649,8 +57828,11 @@ renal artery http://upload.wikimedia.org/wikipedia/commons/d/da/Gray1120.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb @@ -57735,8 +57917,11 @@ The right [renal artery] passes behind the inferior vena cava, the right renal vein, the head of the pancreas, and the descending part of the duodenum[WP] right renal artery http://upload.wikimedia.org/wikipedia/commons/d/da/Gray1120.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb @@ -57795,8 +57980,11 @@ The left [renal artery] is somewhat higher than the right; it lies behind the left renal vein, the body of the pancreas and the splenic vein, and is crossed by the inferior mesenteric vein[WP] left renal artery - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb @@ -58381,8 +58569,12 @@ splenic artery https://github.com/obophenotype/uberon/issues/268 http://upload.wikimedia.org/wikipedia/commons/a/a2/Gray1188.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb @@ -58530,8 +58722,11 @@ middle colic artery http://upload.wikimedia.org/wikipedia/commons/c/cb/Gray537.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb @@ -58629,8 +58824,6 @@ ileocolic artery http://upload.wikimedia.org/wikipedia/commons/a/ad/Gray536.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb @@ -60180,14 +60373,14 @@ - + - + The protruding lymphoid tissue located on the mucosa of the intestine that is composed of densely packed B cell follicles. Reptiles have accumulations of lymphocytes in their guts that may be primitive Peyer's patches (Zapata and Solas). @@ -60215,11 +60408,11 @@ Peyer's patch - + - + @@ -60233,13 +60426,13 @@ - + EDITOR_NOTE check this - + PMID:PMID:20181529 @@ -60318,8 +60511,8 @@ - - + + A compound tubular submucosal gland found in that portion of the duodenum which is above the hepatopancreatic sphincter (Sphincter of Oddi). The main function of these glands is to produce a mucus-rich alkaline secretion (containing bicarbonate)[WP]. currently defined as equivalent to any submucosal gland in the duodenum. Said to be absent outside mammlian (Andrew 1959) but Ziswiler and Farner (1972) noted similar glands at the gastroduodenal junction of some birds @@ -60345,11 +60538,11 @@ duodenal gland - + - + @@ -60362,13 +60555,13 @@ - + FMA, modified - + unclear for Aves ISBN:9780521617147 @@ -60423,7 +60616,7 @@ - + @@ -60469,7 +60662,7 @@ intestinal villus http://upload.wikimedia.org/wikipedia/commons/3/38/Small_intestine_low_mag.jpg - + @@ -60482,7 +60675,7 @@ - + ZFA @@ -60578,7 +60771,7 @@ - + The pancreatic veins consist of several small vessels which drain the body and tail of the pancreas, and open into the trunk of the great pancreatic vein. [WP,unvetted]. see also MA:0002165 ! lieno-pancreatic vein @@ -60596,14 +60789,14 @@ pancreatic tributary of splenic vein - + - + FMA/obol @@ -60654,7 +60847,7 @@ - + A blood vessel that drains blood from the large intestine that usually terminates when reaching the splenic vein, which goes on to form the portal vein with the superior mesenteric vein (SMV). Anatomical variations include the IMV draining into the confluence of the SMV and splenic vein and the IMV draining in the SMV. The IMV lies to the right of the similarly name artery, the inferior mesenteric artery, which originates from the abdominal aorta. [WP,unvetted]. BTO:0002782 @@ -60676,16 +60869,17 @@ inferior mesenteric vein http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb - + - + FMA/obol @@ -60737,7 +60931,7 @@ - + A tributary of the superior mesenteric vein that drains the jejunum. EMAPA:37160 @@ -60751,7 +60945,7 @@ jejunal vein http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png - + @@ -60764,7 +60958,7 @@ - + FMA/obol @@ -60817,7 +61011,7 @@ - + The veins that drain blood from the ileum into the superior mesenteric vein. EMAPA:37149 @@ -60831,14 +61025,14 @@ ileal vein - + - + FMA Wikipedia @@ -60909,8 +61103,11 @@ middle colic vein http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb @@ -60989,8 +61186,11 @@ ileocolic vein http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb @@ -61025,9 +61225,9 @@ - - - + + + An abdominal muscle that inserts on the last rib and transverse processes of lumbar vertebrae. It is irregular and quadrilateral in shape, and broader below than above. EMAPA:18524 FMA:15569 @@ -61043,36 +61243,36 @@ quadratus lumborum http://upload.wikimedia.org/wikipedia/commons/d/de/Gray1124.png - + - + - + - + Last rib and transverse processes of lumbar vertebrae dbpedia - + Last rib and transverse processes of lumbar vertebrae dbpedia - + Last rib and transverse processes of lumbar vertebrae dbpedia @@ -61116,7 +61316,7 @@ - + The lateral abdominal wall muscle that is deep to the internal oblique. One of a pair of transverse abdominal muscles that is the anterolateral muscle of the abdomen, lying immediately under the internal abdominal oblique. [TFD][VHOG] @@ -61153,7 +61353,7 @@ transversus abdominis muscle http://upload.wikimedia.org/wikipedia/commons/3/32/Illu_trunk_muscles.jpg - + @@ -61166,7 +61366,7 @@ - + dbpedia @@ -61324,8 +61524,12 @@ uberon UBERON:0001222 right ureter - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Ureter_R.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Ureter_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-female-right/v1.0/assets/VH_F_Ureter_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-female-right/v1.1/assets/VH_F_Ureter_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-male-right/v1.0/assets/VH_M_Ureter_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-male-right/v1.1/assets/VH_M_Ureter_R.glb @@ -61380,8 +61584,12 @@ uberon UBERON:0001223 left ureter - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Ureter_L.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Ureter_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-female-left/v1.0/assets/VH_F_Ureter_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-female-left/v1.1/assets/VH_F_Ureter_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-male-left/v1.0/assets/VH_M_Ureter_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-male-left/v1.1/assets/VH_M_Ureter_L.glb @@ -61409,14 +61617,14 @@ - + - + @@ -61466,26 +61674,34 @@ In this ontology, the renal pelvis is represented as the area of part-overlap between the kidney and the ureter renal pelvis + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb https://upload.wikimedia.org/wikipedia/commons/c/c0/Illu_kidney2.jpg - + - + - + MA - + FMA @@ -61531,7 +61747,7 @@ - + @@ -61562,20 +61778,28 @@ cortex of kidney - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.2/assets/VH_F_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.2/assets/VH_F_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb https://upload.wikimedia.org/wikipedia/commons/6/69/Illu_kidney.jpg - + - + FMA @@ -61619,6 +61843,14 @@ major calyx collects urine from several renal papillae; all major calyces unite to form the renal pelvis major calyx + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png @@ -61662,6 +61894,14 @@ one renal papilla projects into the lumen of one minor calyx; several minor calyces unite to form a major calyx minor calyx + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png @@ -61728,10 +61968,16 @@ renal papilla - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Ureter_L.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Ureter_R.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png @@ -61765,7 +62011,7 @@ - + @@ -61813,14 +62059,14 @@ renal corpuscle https://upload.wikimedia.org/wikipedia/commons/2/22/Renal_corpuscle.svg - + - + MA ZFA @@ -61921,7 +62167,7 @@ - + @@ -61967,14 +62213,14 @@ glomerular capsule http://upload.wikimedia.org/wikipedia/commons/3/30/Gray1130.svg - + - + Wikipedia @@ -62073,11 +62319,11 @@ - + - - + + @@ -62116,7 +62362,7 @@ nephron tubule - + @@ -62125,18 +62371,18 @@ - + - + - + GO MA ZFA @@ -62150,13 +62396,13 @@ - + ZFA - + checkme @@ -62197,7 +62443,7 @@ - + @@ -62245,14 +62491,14 @@ collecting duct of renal tubule - + - + checkme GO @@ -62602,9 +62848,9 @@ - - - + + + @@ -62647,34 +62893,34 @@ adrenal medulla http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray1185.png - + - + - + - + FMA - + FMA - + Wikipedia @@ -63752,7 +63998,7 @@ - + @@ -63784,7 +64030,7 @@ interlobular bile duct - + @@ -63798,7 +64044,7 @@ - + FMA MA MP @@ -63844,7 +64090,7 @@ - + @@ -63876,17 +64122,19 @@ UBERON:0001247 falciform ligament - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb - + - + MA @@ -63960,8 +64208,12 @@ hilum of spleen http://upload.wikimedia.org/wikipedia/commons/a/a2/Gray1188.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spleen.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spleen.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-female/v1.0/assets/VH_F_Spleen.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-female/v1.1/assets/VH_F_Spleen.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-female/v1.2/assets/VH_F_Spleen.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-male/v1.0/assets/VH_M_Spleen.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-male/v1.1/assets/VH_M_Spleen.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-male/v1.2/assets/VH_M_Spleen.glb @@ -64023,8 +64275,8 @@ - - + + @@ -64059,25 +64311,25 @@ spleen lymphoid follicle - + - + - + CL:tm MA - + FMA @@ -64322,7 +64574,7 @@ - + An adventitia that is part of a ureter. EMAPA:28114 FMA:15892 @@ -64338,14 +64590,14 @@ UBERON:0001252 adventitia of ureter - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -64389,7 +64641,7 @@ - + A lamina propria that is part of a ureter [Automatically generated definition]. EMAPA:28841 @@ -64406,14 +64658,14 @@ lamina propria of ureter - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -64523,8 +64775,8 @@ - - + + Distensible musculomembranous organ situated in the anterior part of the pelvic cavity in which urine collects before excretion[MP]. @@ -64567,15 +64819,17 @@ urinary bladder - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Urinary_Bladder.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Urinary_Bladder.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.0/assets/VH_F_Urinary_Bladder.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.1/assets/VH_F_Urinary_Bladder.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.0/assets/VH_M_Urinary_Bladder.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.1/assets/VH_M_Urinary_Bladder.glb https://upload.wikimedia.org/wikipedia/commons/3/30/Urinary_system.svg - + - + @@ -64588,13 +64842,13 @@ - + FMA - + upper part of UG sinus @@ -64814,8 +65068,10 @@ trigone of urinary bladder - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Urinary_Bladder.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Urinary_Bladder.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.0/assets/VH_F_Urinary_Bladder.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.1/assets/VH_F_Urinary_Bladder.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.0/assets/VH_M_Urinary_Bladder.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.1/assets/VH_M_Urinary_Bladder.glb https://upload.wikimedia.org/wikipedia/commons/5/57/Illu_bladder.jpg @@ -65092,7 +65348,7 @@ - + A serous membrane that is part of a urinary bladder [Automatically generated definition]. TODO - check serosa/peritoneum EMAPA:28661 @@ -65115,14 +65371,14 @@ UBERON:0001260 serosa of urinary bladder - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -65411,7 +65667,7 @@ - + @@ -65443,14 +65699,14 @@ pancreatic acinus - + - + FMA @@ -65499,9 +65755,9 @@ - - - + + + An endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating hormones[GO]. @@ -65544,38 +65800,42 @@ pancreas - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pancreas.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pancreas.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.0/assets/VH_F_Pancreas.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.1/assets/VH_F_Pancreas.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.2/assets/3d-vh-f-pancreas.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.0/assets/VH_M_Pancreas.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.1/assets/VH_M_Pancreas.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.2/assets/3d-vh-m-pancreas.glb https://upload.wikimedia.org/wikipedia/commons/7/7e/Blausen_0699_PancreasAnatomy2.png - + - + - + - + PMID:16417468 - + Wikipedia - + Wikipedia @@ -65640,7 +65900,7 @@ - + A trabecula that is part of a spleen. EMAPA:35808 @@ -65658,14 +65918,14 @@ trabecula of spleen - + - + FMA @@ -65694,7 +65954,7 @@ - + A structure found in the red pulp of the spleen between the sinusoids, consisting of fibrils and connective tissue cells with a large population of monocytes and macrophages. These cords contain half of the human body's monocytes as a reserve so that after tissue injury these monocytes can move in and aid locally sourced monocytes in wound healing. Erythrocytes pass through the cords of Billroth before entering the sinusoids. The passage into the sinusoids may be seen as a bottleneck, where erythrocytes need to be flexible in order to pass through. In disorders of erythrocyte shape and/or flexibility, such as hereditary spherocytosis, erythrocytes fail to pass through and get phagocytosed, causing extravascular hemolysis. EMAPA:37752 @@ -65710,14 +65970,14 @@ splenic cord - + - + MA @@ -65764,6 +66024,7 @@ The femoral nerve, the largest branch of the lumbar plexus, arises from the ventral divisions of the second, third, and fourth lumbar nerves. It descends through the fibers of the Psoas major, emerging from the muscle at the lower part of its lateral border, and passes down between it and the Iliacus, behind the iliac fascia; it then runs beneath the inguinal ligament, into the thigh, and splits into an anterior and a posterior division. Under the inguinal ligament, it is separated from the femoral artery by a portion of the Psoas major. [WP,unvetted]. + EHDAA2:0000507 EHDAA:5655 EMAPA:35343 @@ -65780,6 +66041,7 @@ uberon nervus femoralis UBERON:0001267 + femoral nerve http://upload.wikimedia.org/wikipedia/commons/7/7c/Gray823.png @@ -65870,8 +66132,8 @@ - - + + The acetabulum is a concave surface of the pelvis. The head of the femur meets with the pelvis at the acetabulum, forming the hip joint. There are three bones of the os coxae (hip bone) that come together to form the acetabulum. Contributing a little more than two-fifths of the structure is the ischium, which provides lower and side boundaries to the acetabulum. The ilium forms the upper boundary, providing a little less than two-fifths of the structure of the acetabulum. The rest is formed by the pubis, near the midline. It is bounded by a prominent uneven rim, which is thick and strong above, and serves for the attachment of the acetabular labrum, which reduces its opening, and deepens the surface for formation of the hip joint. At the lower part of the acetabulum is the acetabular notch, which is continuous with a circular depression, the acetabular fossa, at the bottom of the cavity of the acetabulum. The rest of the acetabulum is formed by a curved, crescent-moon shaped surface, the lunate surface, where the joint is made with the head of the femur. Its counterpart in the pectoral girdle is the glenoid fossa.[WP,unvetted]. Cavity for the articulation of the proximal bone of the hind limb.[AAO] During the transformation from the osteolepiform fins to tetrapod limbs, the appendages and girdles underwent a number of radical changes. The pelvic girdle became a weight-bearing structure by evolution of an ischium, a full mesio-ventral contact between the two sides of the girdle, an ilium, and a contact between the vertebral column and the girdle through a sacral rib. Fore- and hindlimbs shifted laterally by reorientation of the glenoid and the acetabulum.[well established][VHOG] @@ -65899,11 +66161,11 @@ acetabular part of hip bone http://upload.wikimedia.org/wikipedia/commons/2/29/Illu_pelvic_girdle.jpg - + - + @@ -65916,13 +66178,13 @@ - + Phenoscape - + FMA @@ -66016,8 +66278,12 @@ uberon UBERON:0001270 bony pelvis - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.0/assets/VH_F_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.1/assets/VH_F_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.2/assets/VH_F_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.0/assets/VH_M_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.1/assets/VH_M_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.2/assets/VH_M_Pelvis.glb @@ -66151,7 +66417,7 @@ - + @@ -66184,7 +66450,7 @@ innominate bone http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray341.png - + @@ -66197,7 +66463,7 @@ - + FMA @@ -66292,14 +66558,14 @@ - + - + @@ -66338,27 +66604,31 @@ ilium - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.0/assets/VH_F_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.1/assets/VH_F_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.2/assets/VH_F_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.0/assets/VH_M_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.1/assets/VH_M_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.2/assets/VH_M_Pelvis.glb - + - + - + FMA - + cjm @@ -66456,7 +66726,7 @@ - + @@ -66488,10 +66758,14 @@ ischium http://upload.wikimedia.org/wikipedia/commons/2/29/Illu_pelvic_girdle.jpg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb - - + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.0/assets/VH_F_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.1/assets/VH_F_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.2/assets/VH_F_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.0/assets/VH_M_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.1/assets/VH_M_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.2/assets/VH_M_Pelvis.glb + + @@ -66516,7 +66790,7 @@ - + cjm @@ -66584,7 +66858,7 @@ - + @@ -66624,10 +66898,14 @@ pubis - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.0/assets/VH_F_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.1/assets/VH_F_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.2/assets/VH_F_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.0/assets/VH_M_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.1/assets/VH_M_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.2/assets/VH_M_Pelvis.glb - + @@ -66652,7 +66930,7 @@ - + FMA @@ -67106,7 +67384,7 @@ - + @@ -67136,14 +67414,14 @@ liver parenchyma - + - + XAO @@ -67212,7 +67490,7 @@ - + @@ -67262,14 +67540,14 @@ hepatic sinusoid - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -67334,8 +67612,8 @@ - - + + @@ -67378,11 +67656,11 @@ intralobular bile duct - + - + @@ -67395,13 +67673,13 @@ - + FMA - + FMA @@ -67463,9 +67741,9 @@ - - - + + + @@ -67497,15 +67775,15 @@ bile canaliculus http://upload.wikimedia.org/wikipedia/commons/d/d9/Gray1094.png - + - + - + @@ -67519,19 +67797,19 @@ - + BTO - + FMA - + FMA @@ -67601,10 +67879,18 @@ The renal columns have been thought of as being part of the medulla only because they are located in the inner, medullary region of the kidney, rather than in the outer, cortical region. Histologically, they are extensions of the renal cortex. renal column - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.2/assets/VH_F_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.2/assets/VH_F_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb https://upload.wikimedia.org/wikipedia/commons/c/c0/Illu_kidney2.jpg @@ -67666,15 +67952,15 @@ - - + + - + The basic functional unit of the kidney. its chief function is to regulate the concentration of water and soluble substances like sodium salts by filtering the blood, reabsorbing what is needed and excreting the rest as urine. A nephron eliminates wastes from the body, regulates blood volume and blood pressure, controls levels of electrolytes and metabolites, and regulates blood pH. Its functions are vital to life and are regulated by the endocrine system by hormones such as antidiuretic hormone, aldosterone, and parathyroid hormone.[WP]. kidney terms require review for cross-vertebrate compatibility and developmental relationships. @@ -67707,34 +67993,34 @@ nephron http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png - + - + - + - + FMA - + definitional - + Bgee:AN @@ -67918,15 +68204,15 @@ - - + + - + @@ -67963,15 +68249,15 @@ proximal convoluted tubule http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png - + - + - + @@ -67984,20 +68270,20 @@ - + MA uses subclass GOC:mtg_kidney_jan10 - + GO - + Wikipedia @@ -68163,7 +68449,7 @@ - + @@ -68190,7 +68476,7 @@ descending limb of loop of Henle http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png - + @@ -68203,7 +68489,7 @@ - + FMA @@ -68227,9 +68513,9 @@ - - - + + + @@ -68269,15 +68555,15 @@ proximal straight tubule - + - + - + @@ -68290,20 +68576,20 @@ - + MA - + MA uses subclass GOC:mtg_kidney_jan10 - + MA @@ -68451,7 +68737,7 @@ - + @@ -68489,7 +68775,7 @@ distal convoluted tubule https://upload.wikimedia.org/wikipedia/commons/2/21/Kidney_nephron.png - + @@ -68502,7 +68788,7 @@ - + EMAPA GO MA-modified-from-isa @@ -68630,7 +68916,7 @@ - + @@ -68659,14 +68945,14 @@ inner medulla of kidney - + - + GO:0072053 @@ -68727,7 +69013,7 @@ - + @@ -68777,14 +69063,14 @@ endometrium https://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cervix.jpg - + - + FMA @@ -68860,7 +69146,7 @@ - + @@ -68910,14 +69196,14 @@ myometrium https://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cervix.jpg - + - + FMA @@ -68986,7 +69272,7 @@ - + Outer serosa layer of the uterus. TODO - check for parallel structure with peritoneum EMAPA:37792 @@ -69010,14 +69296,14 @@ serosa of uterus https://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cervix.jpg - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -69077,8 +69363,8 @@ - - + + The psoas major is a long fusiform muscle placed on the side of the lumbar region of the vertebral column and brim of the lesser pelvis. It joins the iliacus muscle to form the iliopsoas. In less than 50 per cent of subjects the psoas major is accompanied by the psoas minor. [WP,unvetted]. BTO:0001877 @@ -69098,11 +69384,11 @@ psoas major muscle http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG - + - + @@ -69115,14 +69401,14 @@ - + Transverse processes of T12-L5 and the lateral aspects of the discs between them dbpedia - + in the lesser trochanter of the femur dbpedia @@ -69181,7 +69467,7 @@ - + @@ -69211,14 +69497,14 @@ http://upload.wikimedia.org/wikipedia/commons/1/13/Anteriorglanspenis.jpg https://upload.wikimedia.org/wikipedia/commons/3/35/Male_anatomy.png - + - + Bgee:AN @@ -69274,7 +69560,7 @@ - + The external sac of skin that encloses the testes. It is an extension of the abdomen, and in placentals is located between the penis and anus. scrotal In elephants the testes remain in the abdomen @@ -69303,14 +69589,14 @@ http://upload.wikimedia.org/wikipedia/commons/a/a6/Scrotum_warm_and_cold.jpg http://upload.wikimedia.org/wikipedia/en/thumb/3/3e/HairedHumanScrotum.png/200px-HairedHumanScrotum.png - + - + Wikipedia @@ -69370,14 +69656,14 @@ - + - + @@ -69432,24 +69718,24 @@ epididymis http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_testis_surface.jpg - + - + - + FMA - + Wikipedia @@ -69509,7 +69795,8 @@ uberon UBERON:0001302 right uterine tube - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Fallopian_Tube_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/fallopian-tube-female-right/v1.0/assets/VH_F_Fallopian_Tube_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/fallopian-tube-female-right/v1.1/assets/VH_F_Fallopian_Tube_R.glb @@ -69566,7 +69853,8 @@ uberon UBERON:0001303 left uterine tube - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Fallopian_Tube_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/fallopian-tube-female-left/v1.0/assets/VH_F_Fallopian_Tube_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/fallopian-tube-female-left/v1.1/assets/VH_F_Fallopian_Tube_L.glb @@ -69699,7 +69987,7 @@ - + A spherical aggregation of cells in the ovary that contains a single oocyte[WP,modified]. TODO - align subtypes based on staging, which is taxon-specific @@ -69738,14 +70026,14 @@ http://upload.wikimedia.org/wikipedia/commons/c/ca/Human_ovarian_follicle.jpg https://upload.wikimedia.org/wikipedia/commons/e/e6/Primary_follicle-4.JPG - + - + Wikipedia @@ -70073,7 +70361,7 @@ umbilical artery https://github.com/obophenotype/uberon/issues/328 http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray502.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Placenta.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/placenta-full-term-female/v1.0/assets/VH_F_Placenta.glb @@ -70494,7 +70782,8 @@ external iliac vein - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb https://upload.wikimedia.org/wikipedia/commons/6/65/Iliac_veins.gif @@ -70569,8 +70858,11 @@ internal iliac vein http://upload.wikimedia.org/wikipedia/commons/c/cb/Internaliliacv.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb @@ -70689,7 +70981,7 @@ - + One the veins that drains the vaginal venous plexus, into the hypogastric veins. [WP,modified]. EMAPA:37796 @@ -70705,14 +70997,14 @@ vaginal vein http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray589.png - + - + FMA/obol @@ -70758,7 +71050,7 @@ - + The iliolumbar vein is the vena comitans of the iliolumbar artery. The obturator nerve crosses superficial to it. A single vein is found more commonly than a double vein. It drains vertebral segments four and five. It is closely related to the ascending lumbar vein. [WP,unvetted]. EMAPA:37152 @@ -70777,14 +71069,14 @@ iliolumbar vein http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png - + - + FMA/obol @@ -70819,7 +71111,7 @@ - + The obturator vein begins in the upper portion of the adductor region of the thigh and enters the pelvis through the upper part of the obturator foramen, in the obturator canal. It runs backward and upward on the lateral wall of the pelvis below the obturator artery, and then passes between the ureter and the hypogastric artery, to end in the hypogastric vein. It has an anterior and posterior branch (similar to obturator artery). [WP,unvetted]. EMAPA:37677 @@ -70836,14 +71128,14 @@ obturator vein http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png - + - + FMA/obol @@ -70967,7 +71259,7 @@ - + The tibial nerve is a branch of the sciatic nerve. The tibial nerve passes through the popliteal fossa to pass below the arch of soleus. In the popliteal fossa the nerve gives off branches to gastrocnemius, popliteus, soleus and plantaris muscles, an articular branch to the knee joint, and a cutaneous branch that will become the sural nerve. The sural nerve is joined by fibres from the common peroneal nerve and runs down the calf to supply the lateral side of the foot. Below the soleus muscle the nerve lies close to the tibia and supplies the tibialis posterior, the flexor digitorum longus and the flexor hallucis longus. The nerve passes into the foot running posterior to the medial malleolus. Here it is bound down by the flexor retinaculum in company with the posterior tibial artery. [WP,unvetted]. EMAPA:36512 @@ -70987,14 +71279,14 @@ tibial nerve http://upload.wikimedia.org/wikipedia/commons/1/1a/Gray828.png - + - + FMA WP @@ -71121,7 +71413,7 @@ - + Muscle (organ) which is a part of the pelvis. Examples: levator ani,. @@ -71138,7 +71430,7 @@ muscle of pelvis - + @@ -71150,7 +71442,7 @@ - + FMAdef @@ -71196,7 +71488,7 @@ - + The Levator ani is a broad, thin muscle, situated on the side of the pelvis. It is attached to the inner surface of the side of the lesser pelvis, and unites with its fellow of the opposite side to form the greater part of the floor of the pelvic cavity. It supports the viscera in pelvic cavity, and surrounds the various structures which pass through it. In combination with the Coccygeus muscle, it forms the pelvic diaphragm. [WP,unvetted]. the levator ani muscle acts to lower the tail, in animals that have one EMAPA:19165 @@ -71214,14 +71506,14 @@ levator ani muscle http://upload.wikimedia.org/wikipedia/commons/6/63/Gray404.png - + - + inner surface of the side of the lesser pelvis dbpedia @@ -71264,8 +71556,8 @@ - - + + The Coccygeus is a muscle of the pelvic wall (i.e. peripheral to the pelvic floor), situated behind the levator ani and in front of the sacrospinous ligament. It is a triangular plane of muscular and tendinous fibers, arising by its apex from the spine of the ischium and sacrospinous ligament, and inserted by its base into the margin of the coccyx and into the side of the lowest piece of the sacrum. It assists the Levator ani and Piriformis in closing in the back part of the outlet of the pelvis. [WP,unvetted]. EMAPA:37482 @@ -71284,25 +71576,25 @@ coccygeus muscle http://upload.wikimedia.org/wikipedia/commons/6/63/Gray404.png - + - + - + sacral nerves: S4 S5 or S3-S4 dbpedia - + Sacrospinous ligament and ischial spine dbpedia @@ -71759,7 +72051,6 @@ male urethra - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Urethra.glb https://upload.wikimedia.org/wikipedia/commons/c/cb/Female_anatomy.png @@ -71848,8 +72139,8 @@ - - + + @@ -71878,27 +72169,27 @@ prostatic urethra http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray1142.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Urethra.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb - + - + - + FMA MA - + FMA @@ -72004,8 +72295,8 @@ - - + + @@ -72041,24 +72332,24 @@ spongiose part of urethra http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray1142.png - + - + - + FMA - + FMA @@ -72310,14 +72601,14 @@ - + - + The Dorsal Artery of the Penis ascends between the crus penis and the pubic symphysis, and, piercing the inferior fascia of the urogenital diaphragm, passes between the two layers of the suspensory ligament of the penis, and runs forward on the dorsum of the penis to the glans, where it divides into two branches, which supply the glans and prepuce. On the penis, it lies between the dorsal nerve and deep dorsal vein, the former being on its lateral side. It supplies the integument and fibrous sheath of the corpus cavernosum penis, sending branches through the sheath to anastomose with the deep artery of the penis. [WP,unvetted]. BTO:0005088 @@ -72337,24 +72628,24 @@ dorsal artery of penis http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray1155.png - + - + - + BTO - + FMA @@ -72560,7 +72851,7 @@ - + @@ -72605,14 +72896,14 @@ http://upload.wikimedia.org/wikipedia/commons/4/49/Seminiferous_tubule_and_sperm_low_mag.jpg http://upload.wikimedia.org/wikipedia/commons/6/6a/Gray1145.png - + - + Wikipedia @@ -72770,8 +73061,8 @@ - UBERON:0000051 - UBERON:0000052 + + Wikipedia:Vaginal_fornix_of_brain uberon UBERON:0001345 @@ -72788,7 +73079,7 @@ - + A membrane that surrounds or partially covers the vaginal opening. hymen EMAPA:37795 @@ -72809,14 +73100,14 @@ vaginal hymen http://upload.wikimedia.org/wikipedia/commons/2/26/Gray1229.png - + - + FMA @@ -73079,7 +73370,7 @@ - + @@ -73090,7 +73381,7 @@ - + @@ -73135,10 +73426,14 @@ coccyx http://upload.wikimedia.org/wikipedia/commons/9/91/Gray100.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.0/assets/VH_F_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.1/assets/VH_F_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.2/assets/VH_F_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.0/assets/VH_M_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.1/assets/VH_M_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.2/assets/VH_M_Pelvis.glb - + @@ -73151,7 +73446,7 @@ - + FMA @@ -73301,15 +73596,15 @@ - - + + - + A tube running from the outer ear to the middle ear. The human ear canal extends from the pinna to the eardrum and is about 26 mm in length and 7 mm in diameter. consider revisiting superclass after refinement of CARO/EAO, conduit may not be quite correct. tympanic ring, which serves as support for the tympanic membrane, directs invagination of the first pharingeal cleft ectoderm to form the external acoustic meatus (EAM), which provides the outer layer of the membrane[PMID 11237469] @@ -73341,34 +73636,34 @@ external acoustic meatus - + - + - + - + FMA - + PMID:11237469 - + EHDAA2 @@ -73426,7 +73721,7 @@ - + The anus and surrounding regions. Encompasses both internal and external regions, where present. Although all vertebrates have a digestive tract and accessory glands, various parts of this system are not necessarily homologous, analogous, or even present in all species. Therefore, broad comparisons can be best made under the listings of headgut, foregut, midgut, pancreas and biliary system, hindgut.[uncertain][VHOG] EFO:0000847 @@ -73452,14 +73747,14 @@ https://github.com/obophenotype/uberon/issues/507 http://upload.wikimedia.org/wikipedia/commons/f/fb/Gray408.png - + - + cjm @@ -73649,7 +73944,7 @@ - + The medial circumflex femoral artery (internal circumflex artery, medial femoral circumflex artery) is an artery in the upper thigh that helps supply blood to the neck of the femur. [WP,unvetted]. EMAPA:37670 @@ -73666,14 +73961,14 @@ medial circumflex femoral artery http://upload.wikimedia.org/wikipedia/commons/c/c5/Circumflex_femoral_arteries.png - + - + FMA @@ -73705,8 +74000,8 @@ - - + + @@ -73743,24 +74038,24 @@ inferior rectal artery http://upload.wikimedia.org/wikipedia/commons/6/6d/Gray542.png - + - + - + FMA-abduced-lr - + FMA-abduced-lr @@ -73838,7 +74133,7 @@ - + The perineal artery (superficial perineal artery) arises from the internal pudendal artery, and turns upward, crossing either over or under the Transversus perinæi superficialis, and runs forward, parallel to the pubic arch, in the interspace between the Bulbocavernosus and Ischiocavernosus, both of which it supplies, and finally divides into several posterior scrotal branches which are distributed to the skin and dartos tunic of the scrotum. As it crosses the Transversus perinæi superficialis it gives off the transverse perineal artery which runs transversely on the cutaneous surface of the muscle, and anastomoses with the corresponding vessel of the opposite side and with the perineal and inferior hemorrhoidal arteries. It supplies the Transversus perinæi superficialis and the structures between the anus and the urethral bulb. [WP,unvetted]. EMAPA:37107 @@ -73857,14 +74152,14 @@ perineal artery http://upload.wikimedia.org/wikipedia/commons/6/6d/Gray542.png - + - + FMA @@ -73905,8 +74200,8 @@ - - + + @@ -73949,11 +74244,11 @@ cerebrospinal fluid - + - + @@ -73966,13 +74261,13 @@ - + EHDAA2 - + see notes EHDAA2 @@ -74159,7 +74454,7 @@ - + EMAPA:37179 FMA:21246 @@ -74170,14 +74465,14 @@ perineal vein - + - + FMA/obol @@ -74193,7 +74488,7 @@ - + The great saphenous vein (GSV), also greater saphenous vein, is the large (subcutaneous) superficial vein of the leg and thigh. The terms 'safaina' (Greek) and 'el safin' (Arabic) have both been claimed as the origin for the word 'saphenous'. [WP,unvetted]. BTO:0003271 @@ -74217,14 +74512,14 @@ great saphenous vein http://upload.wikimedia.org/wikipedia/commons/5/51/Great_saphenous_vein.png - + - + FMA/obol @@ -74264,8 +74559,8 @@ - FMA:21431 - ZFA:0000271 + + radial radialis uberon @@ -74510,9 +74805,9 @@ - - - + + + An adductor muscle that attaches to the femur and the pelvis. In humans, the obturator externus muscle is a flat, triangular muscle, which covers the outer surface of the anterior wall of the pelvis. It is sometimes considered part of the medial compartment of thigh, and sometimes considered part of the gluteal region. [WP,generalized]. Originates on the ventro-lateral pelvic rim and inserts on the ventral aspect of the femur, medial to the insertion of the pectineus.[AAO] the definition generalized to accommodate the AAO class - 'Originates on the ventro-lateral pelvic rim and inserts on the ventral aspect of the femur, medial to the insertion of the pectineus.' [AAO:0010043] @@ -74539,15 +74834,15 @@ obturator externus http://upload.wikimedia.org/wikipedia/commons/5/55/Posterior_Hip_Muscles_1.PNG - + - + - + @@ -74566,20 +74861,20 @@ - + FMA - + obturator foramen and obturatory membrane dbpedia - + trochanteric fossa of femur dbpedia @@ -74666,10 +74961,10 @@ - - - - + + + + The iliacus is a flat, triangular muscle, which fills the iliac fossa. [WP,unvetted]. AAO has iliacus major and minor, both of which attach to ilium and femur - consider grouping these somehow @@ -74691,19 +74986,19 @@ iliacus muscle http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG - + - + - + - + @@ -74716,26 +75011,26 @@ - + dbpedia - + dbpedia - + lesser trochanter of femur dbpedia - + dbpedia @@ -74783,10 +75078,10 @@ - - - - + + + + The largest and most superficial of the three gluteal muscles [WP,unvetted]. In humans, it makes up a large portion of the shape and appearance of the buttocks. It is a broad and thick fleshy mass of a quadrilateral shape, and forms the prominence of the nates. Its large size is one of the most characteristic features of the muscular system in humans, connected as it is with the power of maintaining the trunk in the erect posture. The muscle is remarkably coarse in structure, being made up of fasciculi lying parallel with one another and collected together into large bundles separated by fibrous septa. @@ -74810,45 +75105,45 @@ gluteus maximus http://upload.wikimedia.org/wikipedia/commons/7/70/Posterior_Hip_Muscles_3.PNG - + - + - + - + - + Gluteal surface of ilium lumbar fascia sacrum sacrotuberous ligament dbpedia - + dbpedia - + dbpedia - + dbpedia @@ -74889,9 +75184,9 @@ - - - + + + One of three gluteal muscles, is a broad, thick, radiating muscle, situated on the outer surface of the pelvis. Its posterior third is covered by the gluteus maximus, its anterior two-thirds by the gluteal aponeurosis, which separates it from the superficial fascia and integument. [WP,unvetted]. A&P heads in rat, single head in humans[DOI:10.1002/ar.22919] EMAPA:19163 @@ -74910,35 +75205,35 @@ gluteus medius http://upload.wikimedia.org/wikipedia/commons/7/70/Posterior_Hip_Muscles_3.PNG - + - + - + - + FMA - + Gluteal surface of ilium under gluteus maximus dbpedia - + Greater trochanter of the femur dbpedia @@ -74974,8 +75269,8 @@ - - + + The psoas minor is a long, slender skeletal muscle that, when present, is placed in front of the psoas major muscle. [WP,unvetted]. BTO:0001878 @@ -74996,11 +75291,11 @@ psoas minor muscle http://upload.wikimedia.org/wikipedia/commons/b/b2/Gray430.png - + - + @@ -75013,14 +75308,14 @@ - + Lateral surface bodies of T12 and L1 vertebrae and intervening intervertebral disc dbpedia - + pectineal line dbpedia @@ -75056,7 +75351,7 @@ - + @@ -75069,7 +75364,7 @@ - + The Sartorius muscle - the longest muscle in the human body - is a long thin muscle that runs down the length of the thigh. Its upper portion forms the lateral border of the femoral triangle. We do NOT group this AAO class here at this stage until further evidence of shared attachments @@ -75099,25 +75394,25 @@ sartorius muscle http://upload.wikimedia.org/wikipedia/commons/a/af/Sartorius.png - + - + - + femoral nerve dbpedia - + anteromedial surface of the upper tibia in the pes anserinus dbpedia @@ -75175,10 +75470,10 @@ - - - - + + + + The biceps femoris is a muscle of the posterior (the back) thigh. As its name implies, it has two parts, one of which (the long head) forms part of the hamstrings muscle group. [WP,unvetted]. BTO:0003418 @@ -75201,19 +75496,19 @@ biceps femoris http://upload.wikimedia.org/wikipedia/commons/b/bc/Biceps_femoris_muscle_long_head.PNG - + - + - + - + @@ -75226,27 +75521,27 @@ - + long head: tibial nerveshort head: common peroneal nerve dbpedia - + dbpedia - + the head of the fibula which articulates with the back of the lateral tibial condyle dbpedia - + the head of the fibula which articulates with the back of the lateral tibial condyle dbpedia @@ -75282,7 +75577,7 @@ - + The semitendinosus is a muscle in the back of the thigh; it is one of the hamstrings. [WP,unvetted]. A&P heads in rat, single head in humans[DOI:10.1002/ar.22919] @@ -75304,7 +75599,7 @@ semitendinosus https://upload.wikimedia.org/wikipedia/commons/3/3f/Semitendinosus_muscle.PNG - + @@ -75317,7 +75612,7 @@ - + dbpedia @@ -75423,9 +75718,9 @@ - - - + + + One of the muscles belong to the group consisting of the rectus femoris and the three heads of the vastus (lateralis, medialis, intermedius). The quadriceps is a collective term for the rectus femoris and the three heads of the vastus (lateralis, medialis, intermedius). [Evolution, Fourth_Edition_(2006)_McGraw-Hill, Function, Kardong_KV, Vertebrates:_Comparative_Anatomy, p.391][VHOG] @@ -75459,35 +75754,35 @@ quadriceps femoris http://upload.wikimedia.org/wikipedia/commons/5/57/Illu_lower_extremity_muscles.jpg - + - + - + - + dbpedia - + combined rectus femoris and vastus muscles dbpedia - + tibial tuberosity dbpedia @@ -75558,9 +75853,9 @@ - - - + + + The Rectus femoris muscle is one of the four quadriceps muscles of the human body. (The others are the vastus medialis, the vastus intermedius, and the vastus lateralis. All four combine to form the quadriceps tendon, which inserts into the patella and continues as the patellar ligament. ) The Rectus femoris is situated in the middle of the front of the thigh; it is fusiform in shape, and its superficial fibers are arranged in a bipenniform manner, the deep fibers running straight down to the deep aponeurosis. [WP,unvetted]. BTO:0001564 @@ -75579,35 +75874,35 @@ rectus femoris https://upload.wikimedia.org/wikipedia/commons/1/14/Rectus_femoris.png - + - + - + - + ISBN:0073040584 - + anterior inferior iliac spine and the exterior surface of the bony ridge which forms the iliac portion of the acetabulum dbpedia - + dbpedia @@ -75629,7 +75924,7 @@ - + The Vastus lateralis (Vastus externus) is the largest part of the Quadriceps femoris. It arises by a broad aponeurosis, which is attached to the upper part of the intertrochanteric line, to the anterior and inferior borders of the greater trochanter, to the lateral lip of the gluteal tuberosity, and to the upper half of the lateral lip of the linea aspera; this aponeurosis covers the upper three-fourths of the muscle, and from its deep surface many fibers take origin. A few additional fibers arise from the tendon of the Glutæus maximus, and from the lateral intermuscular septum between the Vastus lateralis and short head of the Biceps femoris. The fibers form a large fleshy mass, which is attached to a strong aponeurosis, placed on the deep surface of the lower part of the muscle: this aponeurosis becomes contracted and thickened into a flat tendon inserted into the lateral border of the patella, blending with the Quadriceps femoris tendon, and giving an expansion to the capsule of the knee-joint. [WP,unvetted]. lateralis @@ -75652,14 +75947,14 @@ vastus lateralis http://upload.wikimedia.org/wikipedia/commons/5/57/Illu_lower_extremity_muscles.jpg - + - + ISBN:0073040584 @@ -75687,9 +75982,9 @@ - - - + + + The vastus medialis, often called the 'teardrop' muscle, is a medially located muscle of the quadriceps. [WP,unvetted]. medialis @@ -75709,34 +76004,34 @@ vastus medialis https://upload.wikimedia.org/wikipedia/commons/0/05/Illu_lower_extremity_muscles.jpg - + - + - + - + ISBN:0073040584 - + dbpedia - + dbpedia @@ -75816,9 +76111,9 @@ - - - + + + An adductor muscle that attaches to the pelvic bone and the femur. In humans, The pectineus muscle is a flat, quadrangular muscle, situated at the anterior part of the upper and medial aspect of the thigh. It can be classified in the medial compartment of thigh (when the function is emphasized) or the anterior compartment of thigh (when the nerve is emphasized). [WP,generalized]. Originates on the lateral border of the ilium and the anterior margin of the pubis. It inserts on the ventral surface of the femoral shaft.[AAO] @@ -75841,15 +76136,15 @@ pectineus muscle http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG - + - + - + @@ -75862,21 +76157,21 @@ - + Femoral nerve sometimes obturator nerve dbpedia - + pectineal line - superior pubic ramus dbpedia - + dbpedia @@ -75937,7 +76232,7 @@ - + A muscle that is part of the region of the hindlimb between the pelvis and ankle. see notes on UBERON:0000978 for possible confusion over the term 'leg'. @@ -75964,14 +76259,14 @@ muscle of leg - + - + prolog @@ -76039,7 +76334,7 @@ - + @@ -76093,14 +76388,14 @@ primary motor cortex http://upload.wikimedia.org/wikipedia/commons/e/eb/Ba4.png - + - + MA Wikipedia @@ -76194,11 +76489,11 @@ - - - - - + + + + + A muscle that originates in the upper two-thirds of the lateral surface of the tibia and inserts into the medial cuneiform and first metatarsal bones of the foot. Its acts to invert the foot. It is situated on the lateral side of the tibia; it is thick and fleshy above, tendinous below. This muscle overlaps the anterior tibial vessels and deep peroneal nerve in the upper part of the leg. [WP,unvetted]. The M. tibialis cranialis is a muscle that flexes the tarsometatarsus. It originates on the craniodistal aspect of the femur and proximal tibiotarsus and inserts on the cranial surface of the tarsometarsus[EvoWiki]. BTO:0001382 EFO:0001385 @@ -76224,56 +76519,56 @@ tibialis anterior http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray1240.png - + - + - + - + - + - + medial cuneiform and first metatarsal bones of the foot dbpedia - + medial cuneiform and first metatarsal bones of the foot dbpedia - + dbpedia - + dbpedia - + dbpedia @@ -76328,11 +76623,11 @@ - - - - - + + + + + A penniform muscle of the lateral front part of the hindlimb responsible for extension of the digits and dorsiflexion of the ankle. BTO:0000436 @@ -76354,23 +76649,23 @@ extensor digitorum longus http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray1241.png - + - + - + - + - + @@ -76383,34 +76678,34 @@ - + dbpedia - + Anterior lateral condyle of tibia anterior shaft of fibula and superior of interosseous membrane dbpedia - + Anterior lateral condyle of tibia anterior shaft of fibula and superior of interosseous membrane dbpedia - + Anterior lateral condyle of tibia anterior shaft of fibula and superior of interosseous membrane dbpedia - + Dorsal surface; middle and distal phalanges of lateral four digits dbpedia @@ -76452,8 +76747,8 @@ - - + + A superficial muscle in the lateral compartment of the leg, and acts to evert and plantar flex the ankle. It is situated at the upper part of the lateral side of the leg, and is the most superficial of the three peroneus muscles. It is innervated by the superficial fibular nerve (superficial peroneal nerve). [WP,unvetted]. EMAPA:36253 FMA:22539 @@ -76479,24 +76774,24 @@ fibularis longus http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray1240.png - + - + - + dbpedia - + dbpedia @@ -76562,24 +76857,24 @@ - - + + - - - + + + - + The most superficial muscle of the triceps surae group, in the posterior portion of the lower hindleg. The most superficial calf muscle in the posterior part of the leg. [TFD][VHOG] @@ -76612,68 +76907,68 @@ gastrocnemius http://upload.wikimedia.org/wikipedia/commons/8/8e/Gastrocnemius.png - + - + - + - + - + - + - + FMA - + tibial nerve from the sciatic specifically nerve roots dbpedia - + superior to articular surfaces of lateral condyle of femur and medial condyle of femur dbpedia - + tendo calcaneus into mid-posteior calcaneus dbpedia - + tendo calcaneus into mid-posteior calcaneus dbpedia - + dbpedia @@ -76730,17 +77025,17 @@ - - - - + + + + - + A deep muscle of the triceps surae group, in the superficial posterior compartment of the leg. @@ -76766,56 +77061,56 @@ soleus muscle http://upload.wikimedia.org/wikipedia/commons/5/57/Illu_lower_extremity_muscles.jpg - + - + - + - + - + - + FMA - + tibial nerve specifically nerve roots dbpedia - + fibula medial border of tibia dbpedia - + dbpedia - + dbpedia @@ -76903,9 +77198,9 @@ - - - + + + The popliteus muscle in the leg is used to unlock the knee by laterally rotating the femur on the tibia during a closed chain movement (such as one with the foot in contact with the ground). [WP,unvetted]. EMAPA:36240 @@ -76928,35 +77223,35 @@ popliteus muscle http://upload.wikimedia.org/wikipedia/commons/c/c1/Gray439.png - + - + - + - + dbpedia - + posterior-medial tibia under the tibial condyles dbpedia - + middle facet of the lateral surface of the lateral femoral condyle dbpedia @@ -77000,9 +77295,9 @@ - - - + + + A deep muscle of the posterior compartment of the hindlimb that is innervated by the tibial nerve, arises from the fibula and insets in the distal phalanx of pedal digit 1. EMAPA:37588 @@ -77020,36 +77315,36 @@ flexor hallucis longus http://upload.wikimedia.org/wikipedia/commons/9/92/Gray442.png - + - + - + - + tibial nerve S1 and S2 nerve roots dbpedia - + fibula posterior aspect of middle 1/3 dbpedia - + Plantar surface; base of distal phalanx of hallux dbpedia @@ -77090,8 +77385,8 @@ - - + + @@ -77133,24 +77428,24 @@ auditory cortex http://upload.wikimedia.org/wikipedia/commons/8/81/Brodmann_41_42.png - + - + - + MA - + Wikipedia @@ -77846,7 +78141,7 @@ - + A longissimus muscle that lies medial to the longissimus cervicis, between it and the semispinalis capitis. It arises by tendons from the transverse processes of the upper four or five thoracic vertebrae, and the articular processes of the lower three or four cervical vertebrae, and is inserted into the posterior margin of the mastoid process, beneath the splenius capitis and sternocleidomastoid.[WP,unvetted]. BTO:0001649 EMAPA:37650 @@ -77864,14 +78159,14 @@ longissimus capitis http://upload.wikimedia.org/wikipedia/commons/1/1f/Longissimus.png - + - + Wikipedia:Mastoid_process @@ -78109,8 +78404,8 @@ - - + + The Semispinalis dorsi (or semispinalis thoracis) consists of thin, narrow, fleshy fasciculi, interposed between tendons of considerable length. It arises by a series of small tendons from the transverse processes of the sixth to the tenth thoracic vertebræ, and is inserted, by tendons, into the spinous processes of the upper four thoracic and lower two cervical vertebrae. [WP,unvetted]. EMAPA:37696 FMA:22828 @@ -78129,11 +78424,11 @@ semispinalis thoracis http://upload.wikimedia.org/wikipedia/commons/6/65/Semispinalis.png - + - + @@ -78146,14 +78441,14 @@ - + transverse processes of the sixth to the tenth thoracic vertebre dbpedia - + spinous processes of the upper four thoracic and lower two cervical vertebrae dbpedia @@ -78208,8 +78503,8 @@ - - + + The semispinalis cervicis (semispinalis colli), thicker than the semispinalis dorsi, arises by a series of tendinous and fleshy fibers from the transverse processes of the upper five or six thoracic vertebræ, and is inserted into the cervical spinous processes, from the axis to the fifth inclusive. The fasciculus connected with the axis is the largest, and is chiefly muscular in structure. [WP,unvetted]. EMAPA:37695 FMA:22829 @@ -78225,11 +78520,11 @@ semispinalis cervicis http://upload.wikimedia.org/wikipedia/commons/7/7f/Gray384.png - + - + @@ -78242,14 +78537,14 @@ - + transverse processes of the upper five or six thoracic vertebrae dbpedia - + cervical spinous processes from the axis to the fifth dbpedia @@ -78285,7 +78580,7 @@ - + The Semispinalis capitis (Complexus) is situated at the upper and back part of the neck, deep to the Splenius, and medial to the Longissimus cervicis and capitis. It arises by a series of tendons from the tips of the transverse processes of the upper six or seven thoracic and the seventh cervical vertebræ, and from the articular processes of the three cervical above this. The tendons, uniting, form a broad muscle, which passes upward, and is inserted between the superior and inferior nuchal lines of the occipital bone. The medial part, usually more or less distinct from the remainder of the muscle, is frequently termed the Spinalis capitis; it is also named the Biventer cervicis since it is traversed by an imperfect tendinous inscription. [WP,unvetted]. EMAPA:37694 FMA:22830 @@ -78306,7 +78601,7 @@ semispinalis capitis http://upload.wikimedia.org/wikipedia/commons/7/7f/Gray384.png - + @@ -78319,7 +78614,7 @@ - + Transversal process of lower cervical and higher thoracal columna dbpedia @@ -78446,8 +78741,8 @@ - - + + A superficial vein of the upper limb that drain parts of manus and forearm. It originates on the medial (ulnar) side of the dorsal venous network of the manus, and it travels up the base of the forearm and arm. Most of its course is superficial; it generally travels in the subcutaneous fat and other fasciae that lie superficial to the muscles of the upper extremity. Because of this, it is usually visible through the skin. Near the region anterior to the cubital fossa, in the bend of the elbow joint, the basilic vein usually connects with the other large superficial vein of the upper extremity, the cephalic vein, via the median cubital vein. The layout of superficial veins in the forearm is highly variable from person to person, and there are generally a variety of other unnamed superficial veins that the basilic vein communicates with. About halfway up the arm proper (the part between the shoulder and elbow), the basilic vein goes deep, travelling under the muscles. There, around the lower border of the teres major muscle, the anterior and posterior circumflex humeral veins feed into it, just before it joins the brachial veins to form the axillary vein. Along with other superficial veins in the forearm, the basilic vein is a possible site for venipuncture. @@ -78468,24 +78763,24 @@ basilic vein http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray576.png - + - + - + FMA/obol - + FMA/obol @@ -78558,8 +78853,8 @@ - - + + A vein that accompanies the brachial artery between the shoulder and the elbow. Vein which collects blood from the forelimb and drains into the subclavian vein.[AAO] @@ -78579,24 +78874,24 @@ brachial vein http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray576.png - + - + - + FMA/obol - + FMA/obol @@ -78633,7 +78928,7 @@ - + A vein between the biceps and pronator radii teres muscles that unites with the common ulnar vein to form the basilic vein within the forearm. Merged median cubital and basilic veins on basis of wikipedia synonym - needs verificied @@ -78656,14 +78951,14 @@ median basilic vein http://upload.wikimedia.org/wikipedia/commons/b/ba/Gray574.png - + - + FMA/obol @@ -79054,8 +79349,8 @@ - - + + A vein formed by the confluence of the thoracodorsal and circumflex scapular veins and accompanying the subscapular artery to drain into the axillary vein. EMAPA:37190 @@ -79067,24 +79362,24 @@ subscapular vein - + - + - + FMA/obol - + FMA/obol @@ -79326,7 +79621,7 @@ - + The major preaxial endochondral bone in the anterior zeugopod[Phenoscape]. One of the two long bones of endochondral origin of the fore-epipodium; it is located on the lateral side of the ulna. Its upper end articulates with both the humerus and the ulna, whereas the lower articulates with the carpals.[AAO] @@ -79352,14 +79647,14 @@ Due to the presence of the radius in Tetrpodomorph fish this element is not inherently linked to the presence of digits or flexor musculature. The corresponding bone in the posterior fin/limb is the tibia.[Phenoscape]. In four-legged animals, the radius is the main load-bearing bone of the lower forelimb. Its structure is similar in most terrestrial tetrapods, but it may be fused with the ulna in some mammals (such as horses) and reduced or modified in animals with flippers or vestigial forelimbs [ISBN:0-03-910284-X] radius bone - + - + definitional @@ -79415,7 +79710,7 @@ - + The major postaxial endochondral bone in the anterior zeugopod[Phenoscape]. One of the two long bones of endochondral origin of the fore-epipodium; it is located on the medial (inner) side of the radius. The upper end of the ulna articulates with the lower end of the humerus forming a strong hinge joint with the carpals, whereas the lower articulates with the carpals.[AAO] @@ -79441,14 +79736,14 @@ ulna http://upload.wikimedia.org/wikipedia/commons/6/67/Illu_upper_extremity.jpg - + - + definitional @@ -80923,8 +81218,12 @@ MP distinguishes compact/cortical bone. in other AOs they are syns compact bone tissue - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.0/assets/VH_F_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.1/assets/VH_F_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.2/assets/VH_F_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.0/assets/VH_M_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.1/assets/VH_M_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.2/assets/VH_M_Pelvis.glb @@ -80994,7 +81293,7 @@ - + @@ -81043,14 +81342,14 @@ UBERON:0001440 forelimb skeleton - + - + FMA @@ -81151,7 +81450,7 @@ - + @@ -81197,14 +81496,14 @@ TOOD - find a home for: FMA:24140 hindlimb skeleton - + - + FMA @@ -81302,7 +81601,7 @@ - + @@ -81341,14 +81640,14 @@ here 'manus' includes both the wrist region, metatarsal region and acropodial region skeleton of manus - + - + EHDAA2 @@ -81424,7 +81723,7 @@ - + Subdivision of trunk proper, which is demarcated from the neck by the plane of the superior thoracic aperture and from the abdomen internally by the inferior surface of the diaphragm and externally by the costal margin and associated with the thoracic vertebral column and ribcage and from the back of the thorax by the external surface of the posterolateral part of the rib cage, the anterior surface of the thoracic vertebral column and the posterior axillary lines; together with the abdomen and the perineum, it constitutes the trunk proper[FMA]. FMA:24216 present in FMA1, but gone in subsequent versions @@ -81462,7 +81761,7 @@ chest http://upload.wikimedia.org/wikipedia/commons/d/db/Chest.jpg - + @@ -81475,7 +81774,7 @@ - + FMA MA @@ -81568,7 +81867,7 @@ - + @@ -81601,14 +81900,14 @@ here 'pes' includes both the ankle region, metatarsals and acropodial region skeleton of pes - + - + EHDAA2 @@ -82251,7 +82550,7 @@ - + @@ -82291,14 +82590,14 @@ navicular bone of pes http://upload.wikimedia.org/wikipedia/commons/8/81/Gray276.png - + - + numbers vary @@ -83466,7 +83765,7 @@ - + The elbow is the region surrounding the elbow-joint-the ginglymus or hinge joint in the middle of the arm. Three bones form the elbow joint: the humerus of the upper arm, and the paired radius and ulna of the forearm. The bony prominence at the very tip of the elbow is the olecranon process of the ulna, and the inner aspect of the elbow is called the antecubital fossa. [WP,unvetted,human-specific]. cubital Naming conventions for pod terms under discussion within phenoscape group @@ -83496,14 +83795,14 @@ elbow https://upload.wikimedia.org/wikipedia/commons/5/5c/Elbow_coude.JPG - + - + EHDAA2 @@ -83730,7 +84029,7 @@ - + The hip region is located lateral to the gluteal region (i.e. the buttock), inferior to the iliac crest, and overlying the greater trochanter of the thigh bone. In adults, three of the bones of the pelvis have fused into the hip bone which forms part of the hip region. The hip joint, scientifically referred to as the acetabulofemoral joint (art. coxae), is the joint between the femur and acetabulum of the pelvis and its primary function is to support the weight of the body in both static (e.g. standing) and dynamic (e.g. walking or running) postures. [WP,modified]. The pelvic girdle is never joined by contributions of dermal bone. From its first appearance in placoderms, the pelvic girdle is exclusively endoskeletal. It arose from pterygiophores, perhaps several times, in support of the fin.[well established][VHOG] coxal @@ -83763,14 +84062,14 @@ hip http://upload.wikimedia.org/wikipedia/commons/9/9f/Hip.jpg - + - + FMA-modified @@ -83882,7 +84181,7 @@ - + @@ -83923,14 +84222,14 @@ pedal digit http://upload.wikimedia.org/wikipedia/commons/5/5e/Toes.jpg - + - + PHENOSCAPE:ni @@ -84022,7 +84321,7 @@ - + @@ -84058,14 +84357,14 @@ shoulder http://upload.wikimedia.org/wikipedia/commons/9/90/Shoulderjoint.PNG - + - + FMA-modified @@ -84122,8 +84421,8 @@ - - + + The joint between adjacent vertebral bodies. May be composed of the nucleus pulposus, annular ligament, and the anterior and posterior longitudinal ligaments. FMA has 'intervertebral joint' as a GAT, and has two distinct classes 'intervertebral symphysis' and 'intervertebral syndesmosis', but note that the latter do not connect the centra vertebral joint @@ -84141,11 +84440,11 @@ UBERON:0001468 intervertebral joint - + - + @@ -84158,13 +84457,13 @@ - + FMA - + connects successive pairs of centra @@ -84213,14 +84512,14 @@ - - + + - - + + The sternoclavicular articulation is a double arthrodial joint composed of two portions separated by an articular disc. The parts entering into its formation are the sternal end of the clavicle, the upper and lateral part of the manubrium sterni, and the cartilage of the first rib, visible from the outside as the suprasternal notch. The articular surface of the clavicle is much larger than that of the sternum, and is invested with a layer of cartilage, which is considerably thicker than that on the latter bone. The ligaments of this joint are: Articular capsule Anterior sternoclavicular ligament Posterior sternoclavicular ligament Interclavicular ligament Costoclavicular ligament Articular disk [WP,unvetted]. sternoclavicular EMAPA:19203 @@ -84241,11 +84540,11 @@ sternoclavicular joint http://upload.wikimedia.org/wikipedia/commons/3/3f/Gray325.png - + - + @@ -84258,13 +84557,13 @@ - + clavicular notch of the manubrium sterni - + sternal end of the clavicle and first rib @@ -84677,7 +84976,7 @@ - + @@ -84688,7 +84987,7 @@ - + @@ -84739,14 +85038,14 @@ bone element - + - + VSAO-modified @@ -84838,9 +85137,9 @@ - FMA:30319 - UBERON:0000211 - UBERON:0002360 + + + uberon UBERON:0001475 made obsolete as it incorrectly grouped classes @@ -84875,9 +85174,9 @@ - - - + + + @@ -84890,12 +85189,12 @@ - - - - - - + + + + + + A muscle of shoulder which attaches to the scapula, clavicle and humerus.[FMA,generalized]. Muscle which originates as three heads, the pars externalis, pars clavicularis, and pars scapularis. The pars externalis originates from the lateral border of the omosternum and inserts on the distal portion of the humerus. The pars clavicularis originates from the ventro-lateral surface of the clavicle and inserts on the deltoid crest of the humerus. The pars scapularis originates from the lateral surface of the clavicle and inserts on the deltoid crest of the humerus.[AAO] @@ -84927,39 +85226,39 @@ deltoid http://upload.wikimedia.org/wikipedia/commons/9/93/Deltoideus.png - + - + - + - + - + - + - + - + - + @@ -84972,59 +85271,59 @@ - + EHDAA2 - + dbpedia - + EHDAA2 - + FMA - + the anterior border and upper surface of the lateral third of the clavicle acromion spine of the scapula dbpedia - + the anterior border and upper surface of the lateral third of the clavicle acromion spine of the scapula dbpedia - + the anterior border and upper surface of the lateral third of the clavicle acromion spine of the scapula dbpedia - + deltoid tuberosity of humerus dbpedia - + dbpedia @@ -85101,9 +85400,9 @@ - - - + + + The infraspinatus muscle is a thick triangular muscle, which occupies the chief part of the infraspinatous fossa. The infraspinatus is a muscle of the rotator cuff. [WP,unvetted]. The pectoral muscles - the pectoralis major and pectoralis minor - evolved from a primitive muscle sheet that connected the coracoid to the humerus. In late reptilians and early mammals, this muscle structure was displaced dorsally; while most of its components evolved into the pectoralis major, some fibers eventually attached to the scapula and evolved into the supraspinatus, the infraspinatus, and parts of the subscapularis. @@ -85128,35 +85427,35 @@ infraspinatus muscle http://upload.wikimedia.org/wikipedia/commons/9/99/Arm_muscles_back_numbers.png - + - + - + - + Wikipedia - + infraspinous fossa of the scapula dbpedia - + middle facet of greater tubercle of the humerus dbpedia @@ -85205,9 +85504,9 @@ - - - + + + Teres major is a muscle of the upper limb and one of six scapulohumeral muscles. It is a thick but somewhat flattened muscle. [WP,unvetted]. EHDAA2:0002004 @@ -85230,35 +85529,35 @@ teres major muscle http://upload.wikimedia.org/wikipedia/commons/9/99/Arm_muscles_back_numbers.png - + - + - + - + EHDAA2 - + posterior aspect of the inferior angle of the scapula dbpedia - + medial lip of the intertubercular sulcus of the humerus dbpedia @@ -85484,7 +85783,7 @@ - + @@ -85510,14 +85809,14 @@ muscle of shoulder - + - + prolog @@ -85750,7 +86049,7 @@ - + The knee joint joins the thigh with the leg and consists of two articulations: one between the femur and tibia, and one between the femur and patella. It is the largest and most complicated joint in the human body. The knee is a mobile trocho-ginglymus (i.e. a pivotal hinge joint), which permits flexion and extension as well as a slight medial and lateral rotation[WP,unvetted]. EFO:0001957 @@ -85776,14 +86075,14 @@ knee joint http://upload.wikimedia.org/wikipedia/commons/c/ca/Knee.agr.jpg - + - + definitional @@ -85833,7 +86132,7 @@ - + @@ -85846,7 +86145,7 @@ - + A synovial joint that connects the femur to the acetbulum of the innominate bone. BTO:0001502 EMAPA:19136 @@ -85869,11 +86168,11 @@ hip joint - + - + @@ -85886,13 +86185,13 @@ - + FMA - + definitional @@ -86229,7 +86528,7 @@ - + A joint that connects the forelimb zeugopod and stylopod skeletons[Obol]. In human anatomy, the elbow joint is a compound joint that actually comprises three separate joints: the joints connecting the upper and lower arm: 1) Articulatio humero-ulnaris and 2) Articulatio humero-radialis as well as the proximal joint connecting the forarm bones: 3) Articulatio radio-ulnaris proximalis EMAPA:19102 @@ -86253,14 +86552,14 @@ elbow joint - + - + definitional @@ -86485,7 +86784,7 @@ - + @@ -86513,14 +86812,14 @@ http://upload.wikimedia.org/wikipedia/commons/e/ea/Brachial_plexus_2.svg https://upload.wikimedia.org/wikipedia/commons/d/d4/Brachial_plexus.jpg - + - + MA @@ -86732,7 +87031,7 @@ - + @@ -86773,17 +87072,21 @@ ascending aorta http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb - - + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb + + - + EHDAA2 @@ -86838,7 +87141,7 @@ - + Any muscle organ that is part of a pelvic girdle [Automatically generated definition]. Note that in MA, this is a subclass of pelvis muscle; in FMA this is a hindlimb muscle, but recall in FMA hindlimb includes the girdle. UBERON:0003271 @@ -86859,14 +87162,14 @@ muscle of pelvic girdle - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -86935,7 +87238,7 @@ - + Any muscle organ that is part of a pes [Automatically generated definition]. BTO:0000477 EMAPA:36160 @@ -86950,14 +87253,14 @@ UBERON:0001498 muscle of pes - + - + prolog @@ -87002,7 +87305,7 @@ - + A muscle organ that is part of an arm [Automatically generated definition]. See notes on UBERON:0001460 for possible terminological confusion over term 'arm'. MA uses this consistent with uberon (forelimb muscle is subdivided into shoulder, arm and hand) @@ -87023,14 +87326,14 @@ muscle of arm - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -87093,7 +87396,7 @@ - + Any muscle organ that is part of a manus [Automatically generated definition]. EMAPA:32644 @@ -87110,14 +87413,14 @@ muscle of manus - + - + prolog @@ -87305,7 +87608,7 @@ - + The dorsal interossei of the hand are muscles that occupy the space between the metacarpals. There are four dorsal interossei in each hand. They are specified as 'dorsal' to contrast them with the palmar interossei, which are located on the anterior side of the metacarpals. The dorsal interosseous muscles are bipennate, with each muscle arising by two heads from the adjacent sides of the metacarpal bones, but more extensively from the metacarpal bone of the finger into which the muscle is inserted. They are inserted into the bases of the proximal phalanges and into the extensor expansion of the corresponding extensor digitorum tendon. The middle digit has two dorsal interossei insert onto it while the first digit (thumb) and the fifth digit (little finger) have none[WP]. EMAPA:37519 FMA:37418 @@ -87324,14 +87627,14 @@ Action: abducts medial digits dorsal interosseous of manus - + - + dbpedia @@ -87437,9 +87740,9 @@ - - - + + + The Coracobrachialis is the smallest of the three muscles that attach to the coracoid process of the scapula. (The other two muscles are pectoralis minor and biceps brachii. ) It is situated at the upper and medial part of the arm. It is perforated by and innervated by the musculocutaneous nerve. [WP,unvetted]. EMAPA:36182 @@ -87461,15 +87764,15 @@ coracobrachialis muscle http://upload.wikimedia.org/wikipedia/commons/8/8c/Coracobrachialis.png - + - + - + @@ -87482,20 +87785,20 @@ - + dbpedia - + coracoid process of scapula dbpedia - + medial humerus dbpedia @@ -87544,9 +87847,9 @@ - - - + + + The brachialis (brachialis anticus) is a muscle in the upper arm that flexes the elbow joint. It lies just deep of the biceps brachii, and is a synergist that assists the biceps brachii in flexing at the elbow. It makes up part of the floor of the region known as the cubital fossa. [WP,unvetted]. A muscle of the stylopodium, covering the distal half of the humerus and the anterior part of the elbow joint. It functions to flex the zeugopodium. [TFD][VHOG] @@ -87571,35 +87874,35 @@ brachialis muscle http://upload.wikimedia.org/wikipedia/commons/8/87/Brachialis.png - + - + - + - + dbpedia - + anterior surface of the humerus particularly the distal half of this bone dbpedia - + coronoid process and the tuberosity of the ulna dbpedia @@ -87651,11 +87954,11 @@ - - - - - + + + + + A muscle in the forelimb stylopod which in humans has several functions, the most important being to rotate the forearm and to flex the elbow. [WP,unvetted]. biceps BTO:0003419 @@ -87681,58 +87984,58 @@ biceps brachii https://upload.wikimedia.org/wikipedia/commons/5/5d/Biceps_brachii_muscle06.png - + - + - + - + - + - + Musculocutaneous nerve dbpedia - + short head: coracoid process of the scapula. long head: supraglenoid tubercle dbpedia - + short head: coracoid process of the scapula. long head: supraglenoid tubercle dbpedia - + radial tuberosity and bicipittal aponeurosis into deep fascia on medial part of forearm dbpedia - + dbpedia @@ -87803,7 +88106,7 @@ - + @@ -87848,17 +88151,21 @@ arch of aorta http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb - - + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb + + - + left arch 4 in human embryology.ch @@ -87918,12 +88225,12 @@ - - - - - - + + + + + + The triceps brachii muscle (Latin for 'three-headed' muscle of the arm, it is called a three headed muscle because there are three bundles of muscle, each of different origin, joining together at the elbow) is the large muscle on the back of the human upper limb. It is the muscle principally responsible for extension of the elbow joint (i.e. straightening of the arm). Though a similarly-named muscle, the triceps surae, is found on the lower leg, the triceps brachii is commonly called simply the 'triceps'. [WP,unvetted]. EHDAA2:0002080 @@ -87950,69 +88257,69 @@ triceps brachii https://upload.wikimedia.org/wikipedia/commons/8/83/Triceps_brachii.png - + - + - + - + - + - + - + radial nerve and axillary nerve dbpedia - + radial nerve and axillary nerve dbpedia - + lateral head: posterior humerus dbpedia - + long head: infraglenoid tubercle of scapula dbpedia - + olecranon process of ulna dbpedia - + dbpedia @@ -88340,7 +88647,7 @@ - + @@ -88373,10 +88680,14 @@ descending aorta http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb - - + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb + + @@ -88389,7 +88700,7 @@ - + Wikipedia @@ -88528,7 +88839,7 @@ - + @@ -88577,14 +88888,14 @@ abdominal aorta http://upload.wikimedia.org/wikipedia/commons/a/af/Gray531.png - + - + FMA @@ -88878,11 +89189,11 @@ - - - - - + + + + + The pronator teres is a muscle of the human body (located mainly in the forearm) that, along with the pronator quadratus, serves to pronate the forearm (turning it so the palm faces posteriorly). [WP,unvetted]. EMAPA:36207 FMA:38450 @@ -88899,57 +89210,57 @@ pronator teres http://upload.wikimedia.org/wikipedia/commons/8/87/Pronator-teres.png - + - + - + - + - + - + dbpedia - + humeral head: medial epicondyle of humerus ulnar head: coronoid process of ulna dbpedia - + humeral head: medial epicondyle of humerus ulnar head: coronoid process of ulna dbpedia - + Middle of the lateral surface of the body of the radius dbpedia - + dbpedia @@ -88991,7 +89302,7 @@ - + A muscle of the forearm that acts to flex and abduct the manus. [WP,unvetted]. Muscle which originates on the inner border of the humerus and inserts on the carpus.[AAO] @@ -89012,14 +89323,14 @@ flexor carpi radialis muscle http://upload.wikimedia.org/wikipedia/commons/5/59/Flexor-carpi-radialis.png - + - + 2 and 3 in human @@ -89063,8 +89374,8 @@ - - + + The flexor carpi ulnaris muscle (FCU) is a muscle of the human forearm that acts to flex and adduct the manus. [WP,unvetted]. AAO has a class with the same name, the exact insertion point is unclear; consider grouping :Muscle which originates from the medial condyle of the humerus and inserts on the carpus. [AAO:0010734] @@ -89084,25 +89395,25 @@ flexor carpi ulnaris muscle http://upload.wikimedia.org/wikipedia/commons/c/c1/FCU.png - + - + - + medial epicondyle dbpedia - + dbpedia @@ -89144,9 +89455,9 @@ - - - + + + A muscle in the forearm that flexes the manual digits[WP,modified]. in EMAPA, this is part of the leg, which is presumably a mistake @@ -89166,15 +89477,15 @@ flexor digitorum profundus http://upload.wikimedia.org/wikipedia/commons/2/24/Flexor-digitorum-profundis.png - + - + - + @@ -89187,21 +89498,21 @@ - + upper 3/4 of the volar and medial surfaces of the body of the ulna interosseous membrane and deep fascia of the forearm dbpedia - + base of the distal phalanges of the fingers dbpedia - + dbpedia @@ -89242,8 +89553,8 @@ - - + + Extensor carpi radialis longus is one of the five main muscles that control movements at the wrist. This muscle is quite long, starting on the lateral side of the humerus, and attaching to the base of the second metacarpal bone (metacarpal of the index finger). [WP,unvetted]. EMAPA:36189 @@ -89262,25 +89573,25 @@ extensor carpi radialis longus muscle http://upload.wikimedia.org/wikipedia/commons/7/75/ECR-longus.png - + - + - + lateral supracondylar ridge dbpedia - + base dbpedia @@ -89316,8 +89627,8 @@ - - + + The Extensor carpi radialis brevis is shorter and thicker than the extensor carpi radialis longus. The longus muscle can be found above the distal end of the Extensor carpi radialis brevis. [WP,unvetted]. EMAPA:36188 @@ -89335,24 +89646,24 @@ extensor carpi radialis brevis muscle - + - + - + dbpedia - + base dbpedia @@ -89388,7 +89699,7 @@ - + @@ -89418,7 +89729,7 @@ http://upload.wikimedia.org/wikipedia/commons/2/25/Extensor_carpi_ulnaris_muscle.png http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray418.png - + @@ -89431,7 +89742,7 @@ - + deep part dbpedia @@ -89463,14 +89774,14 @@ - + - + The Abductor pollicis longus lies immediately below the Supinator and is sometimes united with it. [WP,unvetted]. EMAPA:36210 FMA:38515 @@ -89487,24 +89798,24 @@ abductor pollicis longus http://upload.wikimedia.org/wikipedia/commons/6/66/Gray1231.png - + - + - + dbpedia - + dbpedia @@ -89658,8 +89969,12 @@ brachiocephalic artery http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb @@ -89720,7 +90035,7 @@ - + @@ -89758,7 +90073,7 @@ common carotid artery plus branches http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg - + @@ -89771,7 +90086,7 @@ - + Wikipedia @@ -89907,8 +90222,8 @@ - - + + A terminal branch of the left or right common carotid artery which supplies oxygenated blood to the brain and eyes[MP]. Each of two arteries starting at the bifurcation of the common carotid arteries through which blood circulates to many structures and organs in the head. [TFD][VHOG] @@ -89947,11 +90262,11 @@ internal carotid artery http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray513.png - + - + @@ -89964,13 +90279,13 @@ - + cjm - + FMA @@ -90054,8 +90369,8 @@ - - + + One of two laterally paired arteries that supplies the pectoral appendages, usually branching from the dorsal aorta. Developmental relationships should be added (intersegmental artery and right dorsal aorta in EHDAA2, occipitovertebral artery in XAO) @@ -90093,24 +90408,24 @@ subclavian artery http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg - + - + - + EHDAA2 - + EHDAA2 @@ -90342,8 +90657,12 @@ left common carotid artery plus branches http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb @@ -90629,7 +90948,7 @@ - + The medial plantar artery (internal plantar artery), much smaller than the lateral, passes forward along the medial side of the foot. It is at first situated above the Abductor hallucis, and then between it and the Flexor digitorum brevis, both of which it supplies. At the base of the first metatarsal bone, where it is much diminished in size, it passes along the medial border of the first toe, anastomosing with the first dorsal metatarsal artery. Small superficial digital branches accompany the digital branches of the medial plantar nerve and join the plantar metatarsal arteries of the first three spaces. [WP,unvetted]. EMAPA:37101 @@ -90649,14 +90968,14 @@ medial plantar artery http://upload.wikimedia.org/wikipedia/commons/3/3e/Gray555.png - + - + FMA @@ -90855,7 +91174,7 @@ - + The popliteal vein course runs alongside the popliteal artery but carries the blood from the knee joint and muscles in the thigh and calf back to the heart. Its origin is defined by the junction of the posterior tibial vein and anterior tibial vein. It drains the peroneal vein before reaching the knee joint and turns into the femoral vein when leaving the adductor canal (also known as Hunter's canal). The popliteal artery extends from the femoral artery behind the popliteal fossa which is the space behind the knee. [WP,unvetted]. EMAPA:37181 @@ -90876,14 +91195,14 @@ popliteal vein http://upload.wikimedia.org/wikipedia/commons/6/66/Gray609.png - + - + FMA/obol @@ -90918,8 +91237,8 @@ - - + + A vein of the lower limb that carries blood from the anterior compartment of the leg to the popliteal vein which is forms when it joins with the posterior tibial vein. Like most deep veins, the anterior tibial vein is accompanied by an artery of the same name, the anterior tibial artery, along its course. [WP,unvetted]. @@ -90939,11 +91258,11 @@ anterior tibial vein https://upload.wikimedia.org/wikipedia/commons/4/4e/Gray440_color.png - + - + @@ -90956,13 +91275,13 @@ - + FMA/obol - + FMA/obol @@ -91003,8 +91322,8 @@ - - + + A vein of the lower limb carries blood from the posterior compartment and plantar surface of the foot to the popliteal vein which it forms when it joins with the anterior tibial vein. Like most deep veins, the posterior tibial vein is accompanied by an artery of the same name, the posterior tibial artery, along its course. [WP,unvetted]. EMAPA:37183 @@ -91023,11 +91342,11 @@ posterior tibial vein http://upload.wikimedia.org/wikipedia/commons/c/c7/Gray583.png - + - + @@ -91040,13 +91359,13 @@ - + FMA/obol - + FMA/obol @@ -91081,7 +91400,7 @@ - + The small saphenous vein (also lesser saphenous vein), is a relatively large vein of the superficial posterior leg. [WP,unvetted]. BTO:0003272 @@ -91103,14 +91422,14 @@ small saphenous vein http://upload.wikimedia.org/wikipedia/commons/6/62/Gray582.png - + - + FMA @@ -91145,7 +91464,7 @@ - + A continuation of the Dorsal venous arch of the foot and is the origin of the short saphenous vein. @@ -91161,14 +91480,14 @@ lateral marginal vein - + - + FMA/obol @@ -91274,7 +91593,7 @@ - + A continuation of the Dorsal venous arch of the foot and is the origin of the long saphenous vein. EMAPA:37170 @@ -91289,14 +91608,14 @@ medial marginal vein - + - + FMA/obol @@ -91333,7 +91652,7 @@ - + The term 'sural veins' is not sufficient to appropriately designate the complex venous system of the calf. This should be designated as soleal veins (venae solealis), the veins of the soleus muscle and gastrocnemius veins (venae gastrocnemii) EMAPA:37231 FMA:44561 @@ -91343,14 +91662,14 @@ UBERON:0001551 vein of hindlimb zeugopod - + - + FMA @@ -91379,7 +91698,7 @@ - + @@ -91402,14 +91721,14 @@ kidney arcuate artery https://upload.wikimedia.org/wikipedia/commons/8/87/2610_The_Kidney.jpg - + - + MA @@ -91586,7 +91905,7 @@ - + A tube extending from the mouth to the anus. @@ -91629,14 +91948,14 @@ digestive tract - + - + NCBIBook:NBK10107 @@ -91854,8 +92173,8 @@ - FMA:45729 - MA:0000581 + + head organ organ head uberon @@ -91949,8 +92268,8 @@ - - + + A group of muscles (or in some classifications, muscle bellies) that are located under the jaw and attach to the base of the cranium and typically attaches to the hyoid apparatus via a common tendon. this class refers to the mereological sum of digastric muscles in an organism (typically two). The digastric muscle (also digastricus) (named digastric as it has two bellies) is a small muscle located under the jaw. It lies below the body of the mandible, and extends, in a curved form, from the mastoid process to the symphysis menti. It belongs to the suprahyoid muscles group. A broad aponeurotic layer is given off from the tendon of the digastricus on either side, to be attached to body and greater cornu of the hyoid bone; this is termed the suprahyoid aponeurosis. Wikipedia:Digastric_muscle]. @@ -91974,11 +92293,11 @@ digastric muscle group http://upload.wikimedia.org/wikipedia/commons/2/26/Digastricus.png - + - + @@ -91991,14 +92310,14 @@ - + anterior belly - mandibular division of the trigeminal via the mylohyoid nerve; posterior belly - facial nerve dbpedia - + Orangutan DOI:10.1007/BF02547558 Intermediate tendon dbpedia @@ -92077,8 +92396,8 @@ - - + + A muscle that arises by four tendinous slips from the transverse processes of the third, fourth, fifth, and sixth cervical vertebrae and inserts into the inferior surface of the basilar part of the occipital bone.[WP,modified]. flexion of neck at atlanto-occipital joint AAO:0010666 @@ -92100,11 +92419,11 @@ longus capitis muscle https://upload.wikimedia.org/wikipedia/commons/7/7d/Longus_capitis.png - + - + @@ -92117,14 +92436,14 @@ - + anterior tubercles of the transverse processes of the third fourth fifth and sixth cervical vertebrae dbpedia - + basilar part of the occipital bone dbpedia @@ -92179,8 +92498,8 @@ - - + + The mylohyoid is a pharyngeal arch I muscle that participates in oral/pharyngeal behaviors and is innervated by the nerve to mylohyoid and attaches to the midline raphe linking right and left mylohyoid and the mandible. The mylohyoid is a pharyngeal arch I muscle that participates in oral/pharyngeal behaviors and is innervated by the nerve to mylohyoid and attaches to the midline raphe linking R and L mylohyoid and the mandible.[FEED] @@ -92205,11 +92524,11 @@ mylohyoid muscle https://upload.wikimedia.org/wikipedia/commons/9/92/Mylohyoid_muscle.PNG - + - + @@ -92222,14 +92541,14 @@ - + mylohyoid nerve from inferior alveolar branch of mandibular nerve V3 dbpedia - + body of hyoid bone and median raphe dbpedia @@ -92292,10 +92611,10 @@ - - - - + + + + The geniohyoid is a muscle that attaches to the mandible and the hyoid apparatus and is innervated by the first cervical nerve (C1). The geniohyoid is a muscle that attaches to the mandible and the hyoid apparatus and is innervated by C1.[FEED] @@ -92321,19 +92640,19 @@ geniohyoid muscle https://upload.wikimedia.org/wikipedia/commons/2/2c/Geniohyoid_muscle.PNG - + - + - + - + @@ -92346,27 +92665,27 @@ - + C1 via the hypoglossal nerve dbpedia - + C1 via the hypoglossal nerve dbpedia - + dbpedia - + dbpedia @@ -92424,7 +92743,7 @@ - + @@ -92437,7 +92756,7 @@ - + @@ -92450,8 +92769,8 @@ - - + + Intrinsic muscle of the larynx, innervated by the external division of the laryngeal nerve, a branch of the vagus nerve. It attaches to the anterolateral surface of the cricoid cartilage and the external surface of the thyroid cartilage. EMAPA:19270 @@ -92473,36 +92792,36 @@ cricothyroid muscle http://upload.wikimedia.org/wikipedia/commons/f/f4/Musculuscricothyreoideus.png - + - + - + - + external laryngeal branch of the vagus dbpedia - + Anterior and lateral cricoid cartilage dbpedia - + Inferior cornu and lamina of the thyroid cartilage dbpedia @@ -92553,7 +92872,7 @@ - + A fleshy subdivision of one side of the face bounded by an eye, ear and the nose. Surface structure that includes the scales, skin, and muscles that are located ventral and posterior to the eye.[TAO] buccal @@ -92579,14 +92898,14 @@ cheek https://upload.wikimedia.org/wikipedia/commons/a/a9/Chica_cachetona.jpg - + - + FMA-abduced-lr @@ -92650,7 +92969,7 @@ - + @@ -92686,14 +93005,14 @@ muscle of larynx - + - + prolog @@ -92755,8 +93074,8 @@ - - + + The inferior pharyngeal constrictor, the thickest of the three constrictors, arises from the sides of the cricoid and thyroid cartilage. Similarly to the superior and middle pharyngeal constrictor muscles, it is innervated by the vagus nerve (cranial nerve X), specifically, by branches from the pharyngeal plexus and by neuronal branches from the recurrent laryngeal nerve. [WP,unvetted]. This is a pharyngeal arch 4/6 muscle that is integral to the pharyngeal tube, participates in oral/pharyngeal behaviors, is innervated by the pharyngeal plexus of the vagus n. and attaches to the laryngeal cartilages and the midline raphe.[FEED] EMAPA:18965 @@ -92782,25 +93101,25 @@ inferior pharyngeal constrictor http://upload.wikimedia.org/wikipedia/commons/2/22/Musculusconstrictorpharyngisinferior.png - + - + - + cricoid and thyroid cartilage dbpedia - + Wikipedia @@ -92894,14 +93213,14 @@ - + - + Either of a pair of lingual muscles with origin in the mandible, with insertion to the lingual fascia below the mucous membrane and epiglottis, with nerve supply from the hypoglossal nerve, and whose action depresses and protrudes the tongue. Either of a pair of lingual muscles with origin in the mandible, with insertion to the lingual fascia below the mucous membrane and epiglottis, with nerve supply from the hypoglossal nerve, and whose action depresses and protrudes the tongue. [TFD][VHOG] @@ -92931,11 +93250,11 @@ genioglossus muscle http://upload.wikimedia.org/wikipedia/commons/7/7e/Genioglossus.png - + - + @@ -92948,13 +93267,13 @@ - + EHDAA2 - + Wikipedia @@ -93059,7 +93378,7 @@ - + @@ -93089,7 +93408,7 @@ hyoglossus muscle http://upload.wikimedia.org/wikipedia/commons/7/7e/Hyoglossus.png - + @@ -93102,7 +93421,7 @@ - + lingual process in horse dbpedia @@ -93156,8 +93475,8 @@ - - + + The Styloglossus, the shortest and smallest of the three styloid muscles, arises from the anterior and lateral surfaces of the styloid process, near its apex, and from the stylomandibular ligament. Passing downward and forward between the internal and external carotid arteries, it divides upon the side of the tongue near its dorsal surface, blending with the fibers of the Longitudinalis inferior in front of the Hyoglossus; the other, oblique, overlaps the Hyoglossus and decussates with its fibers. [WP,unvetted]. Styloglossus is a muscle that attaches to the tongue and stylohyal and is innervated by Cranial Nerve XII.[FEED] EMAPA:18279 @@ -93174,11 +93493,11 @@ styloglossus http://upload.wikimedia.org/wikipedia/commons/1/16/Styloglossus.png - + - + @@ -93191,13 +93510,13 @@ - + dbpedia - + tip and sides of tongue dbpedia @@ -93236,9 +93555,9 @@ - - - + + + The palatoglossus, glossopalatinus, or palatoglossal muscle is a small fleshy fasciculus, narrower in the middle than at either end, forming, with the mucous membrane covering its surface, the glossopalatine arch. It arises from the anterior surface of the soft palate, where it is continuous with the muscle of the opposite side, and passing downward, forward, and lateralward in front of the palatine tonsil, is inserted into the side of the tongue, some of its fibers spreading over the dorsum, and others passing deeply into the substance of the organ to intermingle with the Transversus linguæ. [WP,unvetted]. Palatoglossus is a muscle that attaches to the soft palate and the tongue and is innervated by Cranial Nerve X via the pharyngeal plexus.[FEED] @@ -93261,35 +93580,35 @@ http://upload.wikimedia.org/wikipedia/commons/6/6e/Gray1014.png http://upload.wikimedia.org/wikipedia/commons/c/c7/Gray1028.png - + - + - + - + Wikipedia - + aponeurosis dbpedia - + dbpedia @@ -93329,7 +93648,7 @@ - + @@ -93342,7 +93661,7 @@ - + @@ -93374,7 +93693,7 @@ extrinsic muscle of tongue - + @@ -93387,7 +93706,7 @@ - + check palatoglossus Wikipedia @@ -93434,7 +93753,7 @@ - + @@ -93450,8 +93769,8 @@ - - + + The intrinsic tongue muscles are an integral part of the tongue and completely contained within the tongue that are innervated by Cranial Nerve XII. The intrinsic tongue muscles are an integral part of the tongue that are innervated by Cranial Nerve XII.[FEED] @@ -93471,11 +93790,11 @@ intrinsic muscle of tongue - + - + @@ -93488,14 +93807,14 @@ - + FEED Wikipedia - + EHDAA2 @@ -93552,7 +93871,7 @@ - + A muscle innervated by a facial nerve. FMA:46751 @@ -93587,14 +93906,14 @@ facial muscle http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray378.png - + - + FEED Wikipedia @@ -93698,10 +94017,10 @@ - - - - + + + + @@ -93730,19 +94049,19 @@ orbicularis oculi muscle http://upload.wikimedia.org/wikipedia/commons/e/e2/Gray379.png - + - + - + - + @@ -93755,26 +94074,26 @@ - + branches of the facial nerve and Zygomatic branches of Facial Nerve dbpedia - + dbpedia - + dbpedia - + dbpedia @@ -93818,7 +94137,7 @@ - + @@ -93828,8 +94147,8 @@ - - + + @@ -93890,24 +94209,24 @@ olfactory nerve http://upload.wikimedia.org/wikipedia/commons/b/be/Gray771.png - + - + - + ISBN:0471888893 - + ISBN:0471888893 @@ -94034,8 +94353,8 @@ - - + + The levator labii superioris (or quadratus labii superioris) is a broad sheet, the origin of which extends from the side of the nose to the zygomatic bone. Its medial fibers form the angular head, which arises by a pointed extremity from the upper part of the frontal process of the maxilla and passing obliquely downward and lateralward divides into two slips. One of these is inserted into the greater alar cartilage and skin of the nose; the other is prolonged into the lateral part of the upper lip, blending with the infraorbital head and with the Orbicularis oris. The intermediate portion or infraorbital head arises from the lower margin of the orbit immediately above the infraorbital foramen, some of its fibers being attached to the maxilla, others to the zygomatic bone. Its fibers converge, to be inserted into the muscular substance of the upper lip between the angular head and the Caninus. The lateral fibers, forming the zygomatic head, arise from the malar surface of the zygomatic bone immediately behind the zygomaticomaxillary suture and pass downward and medialward to the upper lip. [WP,unvetted]. EMAPA:37503 FMA:46805 @@ -94051,11 +94370,11 @@ levator labii superioris http://upload.wikimedia.org/wikipedia/commons/8/8f/Levator_labii_superioris.png - + - + @@ -94068,14 +94387,14 @@ - + Skin and muscle of the upper lip dbpedia - + Skin and muscle of the upper lip dbpedia @@ -94113,10 +94432,10 @@ - - - - + + + + A muscle of facial expression, innervated by the facial nerve, attached to the skin of the lower lip, orbicularis oris muscle, and mandible, and superficial and lateral to the mentalis muscle. See Diogo et al., 2009; Burrows et al., 2011). EMAPA:37516 FMA:46816 @@ -94131,19 +94450,19 @@ depressor labii inferioris http://upload.wikimedia.org/wikipedia/commons/9/96/Depressor_labii_inferioris.png - + - + - + - + @@ -94156,27 +94475,27 @@ - + FMA-abduced-lr - + oblique line of the mandible between the symphysis and the mental foramen dbpedia - + integument of the lower lip Orbicularis oris fibers its fellow of the opposite side dbpedia - + integument of the lower lip Orbicularis oris fibers its fellow of the opposite side dbpedia @@ -94262,8 +94581,8 @@ - - + + The buccinator is a muscle that is attached to the mandible, skin, pterygomandibular raphe and maxilla, and is innervated by Cranial Nerve VII and participates in oropharyngeal behavior. logical definition provided by FEED @@ -94287,25 +94606,25 @@ buccinator muscle http://upload.wikimedia.org/wikipedia/commons/d/df/Buccinator.jpg - + - + - + from the alveolar processes of the maxillary bone and mandible temporomandibular joint dbpedia - + dbpedia says: in the fibers of the orbicularis oris FEED @@ -94459,8 +94778,12 @@ left subclavian artery http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb @@ -95144,7 +95467,7 @@ - + An unpaired vein which in humans arises from the right ascending lumbar vein or the vena cava, enters the thorax through the aortic orifice in the diaphragm, and terminates in the superior vena cava; unlike humans, mice have a single and left-sided azygos vein that develops from the paired embryonic cardinal venous system and drains most of the right and left thoracic walls into the left anterior vena cava[MP]. check development relationships in different species @@ -95167,14 +95490,14 @@ azygos vein https://upload.wikimedia.org/wikipedia/commons/b/b4/Azygos_vein.png - + - + ISBN:0443065837 @@ -95204,7 +95527,7 @@ - + @@ -95235,14 +95558,14 @@ auricular muscle http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray906.png - + - + MA @@ -95368,7 +95691,7 @@ - + @@ -95387,9 +95710,9 @@ - - - + + + Pharyngeal arch 1 muscle that participates in oral/pharyngeal behaviors, is innervated by masseteric nerve branches of the trigeminal nerve (CN V), and attaches to mandible and zygomatic arch. The division of the adductor mandibulae in the various lines of tetrapod evolution correlates with divergences in their methods of feeding. (...) As the jaws become stronger and their movements more complex in the line of evolution toward mammals, the adductor complex becomes divided into several distinct muscles (temporalis, masseter, pterygoideus, tensor tympani, tensor veli palati).[well established][VHOG] @@ -95422,19 +95745,19 @@ https://github.com/obophenotype/uberon/issues/540 http://upload.wikimedia.org/wikipedia/commons/7/78/Illu_head_neck_muscle.jpg - + - + - + - + @@ -95447,27 +95770,27 @@ - + FMA - + zygomatic arch and maxilla dbpedia - + zygomatic arch and maxilla dbpedia - + FEED @@ -95521,8 +95844,8 @@ - - + + Pharyngeal arch 1 muscle that is innervated by the deep temporal branches of the trigeminal nerve and attaches to the wall of the braincase (including the cranial vault) and mandible. Pharyngeal arch 1 muscle that is innervated by the deep temporal nerves and attaches to the wall of the braincase and mandible.[FEED] @@ -95553,25 +95876,25 @@ temporalis muscle http://upload.wikimedia.org/wikipedia/commons/d/d3/Gray382.png - + - + - + coronoid process of the mandible. dbpedia - + dbpedia @@ -95662,7 +95985,7 @@ - + The muscle that stabilizes the stapes bone. The stapedius emerges from a pinpoint foramen in the apex of the pyramidal eminence (a hollow, cone-shaped prominence in the posterior wall of the tympanic cavity), and inserts into the neck of the stapes. [WP,unvetted]. The depressor mandibulae of tetrapods, which opens the jaws, is the homologue of the levator operculi and epihyoidean. In mammals, the depressor mandibulae evolves into the stapedius (...).[well established][VHOG] @@ -95686,14 +96009,14 @@ stapedius muscle http://upload.wikimedia.org/wikipedia/commons/6/65/Musculusstapedius.png - + - + neck of stapes dbpedia @@ -95751,7 +96074,7 @@ - + @@ -95764,8 +96087,8 @@ - - + + The larger of the two muscles of the tympanic cavity, is contained in the bony canal above the osseous portion of the auditory tube. Its role is to dampen sounds produced from chewing. It arises from the cartilaginous portion of the auditory tube and the adjoining part of the great wing of the sphenoid, as well as from the osseous canal in which it is contained. Passing backward through the canal, it ends in a slender tendon which enters the tympanic cavity, makes a sharp bend around the extremity of the septum, known as the processus cochleariformis[1], and is inserted into the manubrium of the malleus, near its root[WP]. The division of the adductor mandibulae in the various lines of tetrapod evolution correlates with divergences in their methods of feeding. (...) As the jaws become stronger and their movements more complex in the line of evolution toward mammals, the adductor complex becomes divided into several distinct muscles (temporalis, masseter, pterygoideus, tensor tympani, tensor veli palati).[well established][VHOG] @@ -95794,35 +96117,35 @@ tensor tympani http://upload.wikimedia.org/wikipedia/commons/8/82/Gray912.png - + - + - + - + medial pterygoid nerve from the mandibular nerve dbpedia - + dbpedia - + handle of the malleus dbpedia @@ -95883,9 +96206,9 @@ - - - + + + Skeletal muscle derived from cranial mesoderm and controls eye movements. todo - resolve discrepancies in which muscles are considered extra-ocular @@ -95930,34 +96253,34 @@ extra-ocular muscle http://upload.wikimedia.org/wikipedia/commons/6/61/MRI_of_human_eye.jpg - + - + - + - + EHDAA2 - + HPO:pr - + EHDAA2 @@ -96065,7 +96388,7 @@ - + The medial rectus muscle is a muscle in the orbit. As with most of the muscles of the orbit, it is innervated by the inferior division of the oculomotor nerve (Cranial Nerve III). This muscle shares an origin with several other extrinsic eye muscles, the anulus tendineus, or common tendon. It is the largest of the extraocular muscles and its only action is adduction of the eyeball. [WP,unvetted]. @@ -96098,7 +96421,7 @@ medial rectus extraocular muscle http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png - + @@ -96111,7 +96434,7 @@ - + inferior division of the oculomotor nerve dbpedia @@ -96182,7 +96505,7 @@ - + The lateral rectus muscle is a muscle in the orbit. It is one of six extraocular muscles that control the movements of the eye (abduction in this case) and the only muscle innervated by the abducens nerve, cranial nerve VI. [WP,unvetted]. @@ -96217,7 +96540,7 @@ lateral rectus extra-ocular muscle http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png - + @@ -96230,7 +96553,7 @@ - + dbpedia @@ -96310,7 +96633,7 @@ - + @@ -96338,16 +96661,10 @@ levator palpebrae superioris http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png - + - - - - - FMA - @@ -96366,6 +96683,12 @@ FMA + + + + + FMA + @@ -96375,7 +96698,7 @@ - + The ciliary muscle is a ring of smooth muscle in the middle layer of the eye that controls the eye's accommodation for viewing objects at varying distances and regulates the flow of aqueous humour through Schlemm's canal. [WP,unvetted]. BTO:0000654 @@ -96398,7 +96721,7 @@ ciliary muscle http://upload.wikimedia.org/wikipedia/commons/2/28/Gray872.png - + @@ -96417,7 +96740,7 @@ - + FMA @@ -96534,10 +96857,10 @@ - - - - + + + + A sphincter muscle that is part of the iris. In humans, it functions to constrict the pupil in bright light or during accommodation. Its dimensions are about 0.75 mm wide by 0.15 mm thick. It is controlled by parasympathetic fibers that originate from the Edinger-Westphal nucleus, travel along the oculomotor nerve (CN III), synapse in the ciliary ganglion, and then enter the eye via the short ciliary nerves. Initially, all the myocytes are of the smooth muscle type, but much later in life, so that ultimately most cells are of the striated muscle type. [WP,unvetted] WP says: It is found in vertebrates and some cephalopods; this class refers to the vertebrate structure @@ -96572,19 +96895,19 @@ sphincter pupillae http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray878.png - + - + - + - + @@ -96597,27 +96920,27 @@ - + ISBN:0781772214 - + encircles iris dbpedia - + encircles iris dbpedia - + dbpedia @@ -96724,10 +97047,10 @@ - - - - + + + + A smooth muscle of the eye, running radially in the iris that functions as a dilator. [WP,unvetted]. It is innervated by the sympathetic system, which acts by releasing noradrenaline, which acts on alpha1-receptors. Thus, when presented with a threatening stimuli that activates the fight-or-flight response, this innervation dilates the iris, thus temporarily letting more light reach the retina @@ -96764,19 +97087,19 @@ dilatator pupillae http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray878.png - + - + - + - + @@ -96789,27 +97112,27 @@ - + ISBN:0781772214 - + outer margins of iris dbpedia - + inner margins of iris dbpedia - + dbpedia @@ -97022,7 +97345,7 @@ - + @@ -97050,14 +97373,14 @@ lingual artery https://upload.wikimedia.org/wikipedia/commons/3/3c/Lingual_artery.PNG - + - + FMA-abduced-lr @@ -97120,7 +97443,7 @@ - + A branch of the lingual artery that supplies the sublingual gland. Check grouping with amphibian structure of the same name @@ -97143,14 +97466,14 @@ sublingual artery http://upload.wikimedia.org/wikipedia/commons/7/7a/Gray559.png - + - + FMA @@ -97750,8 +98073,9 @@ ophthalmic artery http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray514.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb @@ -97809,8 +98133,8 @@ - - + + The central retinal artery (retinal artery) branches off the ophthalmic artery, running inferior to the optic nerve within its dural sheath to the eyeball. [WP,unvetted]. EMAPA:37113 @@ -97834,25 +98158,25 @@ central retinal artery https://upload.wikimedia.org/wikipedia/commons/5/59/Gray514_updated.png - + - + - + proximal portion ISBN:0781772214 - + FMA @@ -97968,7 +98292,7 @@ - + The lacrimal artery arises close to the optic foramen, and is one of the largest branches derived from the ophthalmic artery: not infrequently it is given off before the artery enters the orbit. It accompanies the lacrimal nerve along the upper border of the Lateral Rectus, supplies the lacrimal gland. [WP,unvetted]. EMAPA:37094 @@ -97986,14 +98310,14 @@ lacrimal artery http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray514.png - + - + FMA @@ -98091,7 +98415,7 @@ - + One of a pair of arteries on the brain that supply oxygen to most medial portions of frontal lobes and superior medial parietal lobes. The 2 anterior cerebral arteries arise from the internal carotid artery and are part of the Circle of Willis. @@ -98114,14 +98438,14 @@ anterior cerebral artery https://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg - + - + FMA WP @@ -98187,8 +98511,12 @@ right coronary artery http://upload.wikimedia.org/wikipedia/commons/4/46/Gray492.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb @@ -98247,8 +98575,12 @@ left coronary artery http://upload.wikimedia.org/wikipedia/commons/5/50/Gray495.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb @@ -98277,7 +98609,7 @@ - + The middle cerebral artery (MCA) is one of the three major paired arteries that supplies blood to the cerebrum. The MCA arises from the internal carotid and continues into the lateral sulcus where it then branches and projects to many parts of the lateral cerebral cortex. It also supplies blood to the anterior temporal lobes and the insular cortices. The left and right MCAs rise from trifurcations of the internal carotid arteries and thus are connected to the anterior cerebral arteries and the posterior communicating arteries, which connect to the posterior cerebral arteries. The MCAs are not considered a part of the Circle of Willis. [WP,unvetted]. BTO:0005206 @@ -98301,14 +98633,14 @@ middle cerebral artery https://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg - + - + FMA WP @@ -98345,7 +98677,7 @@ - + @@ -98358,8 +98690,8 @@ - - + + One of a pair of right-sided and left-sided blood vessels in the circle of Willis. It connects the three cerebral arteries of the same side. Anteriorly, it is one portion of the terminal trifurcation of the internal carotid artery. The anterior cerebral artery and the middle cerebral artery are the other two branches of the trifurcation. Posteriorly, it communicates with the posterior cerebral artery. @@ -98390,24 +98722,24 @@ posterior communicating artery http://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg - + - + - + FMA-abduced-lr - + FMA ZFA @@ -98653,8 +98985,8 @@ - - + + A major lymphatic vessel that drains lymph from the lower body, left appendage, and left thorax into the junction of the left jugular and subclavian veins. placement of the ZFA class here is dubious @@ -98683,24 +99015,24 @@ thoracic duct http://upload.wikimedia.org/wikipedia/commons/7/75/Gray599.png - + - + - + TAO - + EHDAA2 @@ -98791,7 +99123,7 @@ - + A major artery that supplues the hindbrain and runs along the ventral keel of the hindbrain. Artery that runs along the ventral keel of the hindbrain. It lies between the primordial hindbrain channels(PHBC). It irrigates the hindbrain and is connected, through the hindbrain, to the PHBC by the central arteries. @@ -98822,14 +99154,14 @@ basilar artery http://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg - + - + EHDAA2 @@ -98885,7 +99217,7 @@ - + The major artery of the midbrain, which crosses the midbrain medially to meet its partner the mesencephalic vein. review this term, check taxon scope @@ -98902,14 +99234,14 @@ mesencephalic artery - + - + ZFA @@ -99054,7 +99386,7 @@ - + @@ -99081,14 +99413,14 @@ posterior cerebral artery https://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg - + - + FMA-abduced-lr @@ -99165,6 +99497,8 @@ artery + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb @@ -99277,6 +99611,8 @@ vein http://upload.wikimedia.org/wikipedia/commons/c/c2/Venous_system_en.svg + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb @@ -99381,8 +99717,12 @@ hepatic portal vein http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb @@ -99446,10 +99786,10 @@ - - - - + + + + The first major branch of the abdominal aorta. EHDAA2:0004519 @@ -99480,45 +99820,47 @@ dorsal aorta in Kardong celiac artery http://upload.wikimedia.org/wikipedia/commons/6/65/Gray532.png + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb - + - + - + - + - + ISBN:0073040584 - + ISBN:0073040584 - + ISBN:0073040584 - + ISBN:0073040584 @@ -99687,7 +100029,7 @@ - + The superior sagittal sinus (also known as the superior longitudinal sinus), within a human cranium, is an area above/behind the brain, which allows blood veins to span the area, from the top of the head towards the back. It is believed that the cerebrospinal fluid drains through the arachnoid granulations into the dural venous sinuses of the superior sagittal sinus. [WP,unvetted]. EMAPA:18636 @@ -99706,14 +100048,14 @@ superior sagittal sinus https://upload.wikimedia.org/wikipedia/commons/b/bd/Gray488_blue.gif - + - + cjm @@ -99782,7 +100124,7 @@ - + @@ -99838,14 +100180,14 @@ oculomotor nerve http://upload.wikimedia.org/wikipedia/commons/6/69/Gray776.png - + - + Wikipedia @@ -100168,7 +100510,7 @@ - + @@ -100194,7 +100536,6 @@ EMAPA:17576 FMA:50866 GAID:726 - HBA:9322 MA:0001100 MBA:901 MESH:D014276 @@ -100230,14 +100571,14 @@ trigeminal nerve https://upload.wikimedia.org/wikipedia/commons/9/99/Gray778_Trigeminal.png - + - + Wikipedia @@ -100361,8 +100702,8 @@ - - + + @@ -100420,25 +100761,25 @@ abducens nerve https://upload.wikimedia.org/wikipedia/commons/2/29/Abducens_nerve1.png - + - + - + found in all vertebrates except lampreys and hagfishes Wikipedia - + Wikipedia @@ -100550,15 +100891,15 @@ - + - - + + @@ -100620,34 +100961,34 @@ facial nerve http://upload.wikimedia.org/wikipedia/commons/1/1f/Cranial_nerve_VII.svg - + - + - + - + ZFA - + Wikipedia - + Wikipedia @@ -100789,7 +101130,7 @@ - + @@ -100854,14 +101195,14 @@ vestibulocochlear nerve http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray789.png - + - + ISBN:0471888893 @@ -100976,7 +101317,7 @@ - + @@ -100998,7 +101339,6 @@ EMAPA:17268 FMA:50870 GAID:827 - HBA:9334 MA:0001093 MBA:808 MESH:D005930 @@ -101032,14 +101372,14 @@ glossopharyngeal nerve http://upload.wikimedia.org/wikipedia/commons/5/5e/Gray791.png - + - + motor Wikipedia @@ -101201,7 +101541,6 @@ EMAPA:17269 FMA:50871 GAID:828 - HBA:9343 MA:0001094 MBA:813 MESH:D007002 @@ -101397,8 +101736,12 @@ right pulmonary artery http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray504.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png @@ -101476,8 +101819,12 @@ left pulmonary artery http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray504.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png @@ -101519,7 +101866,7 @@ - + The anterior facial vein (facial vein) commences at the side of the root of the nose, and is a direct continuation of the angular vein where it also receives a small nasal branch. It lies behind the facial artery and follows a less tortuous course. It receives blood from the external palatine vein before it either joins the anterior branch of the retromandibular vein to form the common facial vein, or drains directly into the internal jugular vein. [WP,unvetted]. Vein which collects blood from muscles of the head and drains into the external jugular vein.[AAO] @@ -101543,14 +101890,14 @@ facial vein http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png - + - + FMA @@ -101619,7 +101966,7 @@ - + The supraorbital vein begins on the forehead where it communicates with the frontal branch of the superficial temporal vein. It runs downward superficial to the Frontalis muscle, and joins the frontal vein at the medial angle of the orbit to form the angular vein. Previous to its junction with the frontal vein, it sends through the supraorbital notch into the orbit a branch which communicates with the ophthalmic vein; as this vessel passes through the notch, it receives the frontal diploic vein through a foramen at the bottom of the notch. The areas drained by this vessel are the forehead, eyebrow and upper eyelid. [WP,unvetted]. EMAPA:37195 @@ -101637,14 +101984,14 @@ supraorbital vein http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png - + - + FMA @@ -101685,7 +102032,7 @@ - + A vein in the chin that is connected to the sublingual and anterior jugular veins and drains into the facial vein. EMAPA:37188 @@ -101699,14 +102046,14 @@ submental vein - + - + FMA/obol @@ -101734,7 +102081,7 @@ - + The retromandibular vein (temporomaxillary vein, posterior facial vein), formed by the union of the superficial temporal and maxillary veins, descends in the substance of the parotid gland, superficial to the external carotid artery but beneath the facial nerve, between the ramus of the mandible and the sternocleidomastoideus muscle. It divides into two branches: an anterior, which passes forward and unites with the anterior facial vein to form the common facial vein. a posterior, which is joined by the posterior auricular vein and becomes the external jugular vein. [WP,unvetted]. @@ -101755,14 +102102,14 @@ retromandibular vein http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png - + - + FMA @@ -101810,7 +102157,7 @@ - + The superficial temporal vein is a vein of the side of the head. [WP,unvetted]. BTO:0003748 @@ -101829,14 +102176,14 @@ superficial temporal vein http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png - + - + FMA Wikipedia @@ -101872,7 +102219,7 @@ - + A temporal vein that arises near the lateral angle of the eye; joins the superficial temporal veins to form the retromandibular vein. EMAPA:37176 @@ -101884,14 +102231,14 @@ middle temporal vein - + - + FMA TFD @@ -101979,7 +102326,7 @@ - + A vein that consists of a short trunk which accompanies the first part of the internal maxillary artery. It is formed by a confluence of the veins of the pterygoid plexus, and passes backward between the sphenomandibular ligament and the neck of the mandible, and unites with the superficial temporal vein to form the retromandibular vein. [WP,unvetted]. in horses, a branch of the external jugular gives off the occipital and caudal auricular vein @@ -101997,14 +102344,14 @@ maxillary vein http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png - + - + FMA @@ -102088,7 +102435,7 @@ - + The anterior auricular veins are veins which drain the anterior aspect of the external ear. [WP,unvetted]. EMAPA:37132 @@ -102105,14 +102452,14 @@ anterior auricular vein http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png - + - + FMA @@ -102275,9 +102622,9 @@ - - - + + + The triceps surae is a pair of muscles located at the calf - the gastrocnemius and the soleus. These muscles both insert into the calcaneus, the bone of the heel of the human foot, and form the major part of the muscle of the back part of the lower leg, commonly known as the calf muscle. The triceps surae is connected to the foot through the Achilles tendon, and has 3 heads deriving from the 2 major masses of muscle. The superficial portion (the gastrocnemius) gives off 2 heads attaching to the base of the femur directly above the knee. The deep (profundis) mass of muscle (the soleus) forms the remaining head which attaches to the superior posterior area of the tibia. The triceps surae is innervated by the tibial nerve, specifically, nerve roots L5-S2. [WP,unvetted]. A set of muscles in FMA, a single organ in MA @@ -102299,34 +102646,34 @@ triceps surae http://upload.wikimedia.org/wikipedia/commons/5/57/Illu_lower_extremity_muscles.jpg - + - + - + - + dbpedia - + dbpedia - + dbpedia @@ -102449,12 +102796,12 @@ - - - - - - + + + + + + The Tibialis posterior is the most central of all the leg muscles, and is located in the posterior compartment of the leg. It is the key stabilizing muscle of the lower leg. [WP,unvetted]. BTO:0000867 EMAPA:36255 @@ -102475,64 +102822,64 @@ tibialis posterior http://upload.wikimedia.org/wikipedia/commons/9/92/Gray442.png - + - + - + - + - + - + - + dbpedia - + dbpedia - + dbpedia - + dbpedia - + dbpedia - + dbpedia @@ -102853,8 +103200,8 @@ - - + + The central retinal vein (retinal vein) is a short vein that runs through the optic nerve and drains blood from the capillaries of the retina into the larger veins outside the eye. The anatomy of the veins of the orbit of the eye varies between individuals, and in some the central retinal vein drains into the superior ophthalmic vein, and in some it drains directly into the cavernous sinus. [WP,unvetted]. EFO:0004271 @@ -102876,25 +103223,25 @@ central retinal vein - + - + - + proximal portion ISBN:0781772214 - + FMA/obol @@ -103007,7 +103354,7 @@ - + @@ -103065,7 +103412,7 @@ trigeminal ganglion http://upload.wikimedia.org/wikipedia/commons/6/69/Gray776.png - + @@ -103078,7 +103425,7 @@ - + Bgee:AN @@ -103202,11 +103549,11 @@ - - - - - + + + + + @@ -103237,23 +103584,23 @@ occipital bone http://upload.wikimedia.org/wikipedia/commons/2/27/Gray194.png - + - + - + - + - + @@ -103266,32 +103613,32 @@ - + FMA - + basi paired exo and supra occipital bones MA-modified - + interparietal (postparietal) - + WP - + PMID:11523816 @@ -103353,10 +103700,10 @@ - - - - + + + + An unpaired bone situated at the base of the skull in front of the temporal bone and basilar part of the occipital bone. The sphenoid bone is one of the seven bones that articulate to form the orbit. Its shape somewhat resembles that of a butterfly or bat with its wings extended. part of viscerocranium (facial skeleton) in FMA @@ -103385,19 +103732,19 @@ sphenoid bone http://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cranial_bones2.jpg - + - + - + - + @@ -103410,25 +103757,25 @@ - + orbito pre and basi sphenoid - + pterygoid process - + alisphenoid - + cjm @@ -103483,9 +103830,9 @@ - - - + + + The large, irregular bone located at the base and side of the skull; consists of three parts at birth: squamous, tympanic, and petrous. In many mammals, as in humans, the petrosal, ectotympanic and squamosal bones synostose to form the temporal bone + styloid process @@ -103512,15 +103859,15 @@ temporal bone http://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cranial_bones2.jpg - + - + - + @@ -103533,20 +103880,20 @@ - + petrosal - + squamosal plus angular temporal series - + styloid process @@ -103608,7 +103955,7 @@ - + @@ -103644,7 +103991,7 @@ ethmoid bone http://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cranial_bones2.jpg - + @@ -103657,7 +104004,7 @@ - + definitional @@ -103730,15 +104077,15 @@ - + - - + + @@ -103761,6 +104108,7 @@ lachrymal bone lacrymal bone uberon + ectethmoid infraorbital 1 lachrymal bone - infraorbital 1 lacrimal - infraorbital 1 @@ -103774,15 +104122,15 @@ lacrimal bone http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray164.png - + - + - + @@ -103795,20 +104143,20 @@ - + orbital series ISBN:0073040584 - + FMA-abduced-lr - + ZFA-modified @@ -103840,6 +104188,12 @@ UMLS:C0222733 ncithesaurus:Lacrimal_Bone + + + + ectethmoid + UBERON:3010146 + @@ -106282,6 +106636,7 @@ The group of sensory neuron cell bodies associated with the facial nerve (seventh cranial nerve). resolve facial VII vs geniculate (see EHDAA2) + These (the epibranchial placodes) are focal thickenings of the embryonic ectoderm that form immediately dorsal and caudal of the clefts between the pharyngeal arches in all vertebrates, and they produce the neuroblasts which migrate and condense to form the distal cranial ganglia: the geniculate, petrosal and nodose ganglia. (...) The one substantial difference between the vertebrate pharyngeal arches and those of the protochordates is the presence of the epibranchial placodes but the evolution of these structures was undoubtedly driven by the endoderm.[well established][VHOG] geniculate BAMS:GgVII @@ -106315,6 +106670,7 @@ internal genu UBERON:0001700 + @@ -106746,8 +107102,8 @@ this class was made obsolete as it conflated the facial skeleton with the splanchnocranium. The facial skeleton includes: * Inferior nasal concha * Lacrimal bone * Mandible * Maxilla * Nasal bone * Palatine bone * Vomer * Zygomatic bone. The hyoid is sometimes included, and sometimes excluded (FMA includes it) (See also notes for ethmoid bone). The splanchoncranium is the endoskeleton derived from pharyngeal arches. - UBERON:0008895 - UBERON:0011156 + + Wikipedia:Facial_skeleton uberon UBERON:0001704 @@ -110342,8 +110698,8 @@ larynx http://upload.wikimedia.org/wikipedia/commons/8/8a/Larynx_external_en.svg - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-larynx.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-larynx.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.0/assets/3d-vh-f-larynx.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.0/assets/3d-vh-m-larynx.glb @@ -110429,8 +110785,8 @@ thyroid cartilage http://upload.wikimedia.org/wikipedia/commons/8/8a/Larynx_external_en.svg - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-larynx.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-larynx.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.0/assets/3d-vh-f-larynx.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.0/assets/3d-vh-m-larynx.glb @@ -110554,8 +110910,8 @@ UBERON:0001739 laryngeal cartilage - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-larynx.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-larynx.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.0/assets/3d-vh-f-larynx.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.0/assets/3d-vh-m-larynx.glb @@ -110636,8 +110992,13 @@ arytenoid cartilage http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray950.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-larynx.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-larynx.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.0/assets/3d-vh-f-larynx.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.0/assets/3d-vh-m-larynx.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb @@ -110733,8 +111094,8 @@ corniculate cartilage http://upload.wikimedia.org/wikipedia/commons/5/56/Gray952.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-larynx.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-larynx.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.0/assets/3d-vh-f-larynx.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.0/assets/3d-vh-m-larynx.glb @@ -110811,8 +111172,8 @@ UBERON:0001742 epiglottic cartilage - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-larynx.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-larynx.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.0/assets/3d-vh-f-larynx.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.0/assets/3d-vh-m-larynx.glb @@ -112343,7 +112704,6 @@ EMAPA:37797 FMA:5731 GAID:721 - HBA:9337 MA:0001106 MBA:917 MESH:D014630 @@ -115174,8 +115534,8 @@ - UBERON:0000053 - UBERON:0000054 + + uberon UBERON:0001784 Obsoleted as it accidentally grouped macula and macula lutea @@ -115231,7 +115591,6 @@ EMAPA:17264 FMA:5865 GAID:802 - HBA:9299 MA:0000215 MBA:967 MESH:D003391 @@ -118331,6 +118690,7 @@ An intermingling of fiber fascicles from adjacent spinal nerves to form a network. + To reach the muscles, dermatomes, and other structures of the limbs, some of the neurons in the spinal nerves come together in the plexus at the base of the limb. Such plexuses occur in all gnathostomes, and they reach their highest complexity among mammals and birds in which the cervical plexus supplies many ventral neck muscles, the brachial plexus supplies the pectoral appendage, a lumbosacral plexus supplies the pelvic appendage, and a coccygeal plexus supplies some of the pelvic muscles.[well established][VHOG] EHDAA2:0001899 EMAPA:16987 @@ -118346,6 +118706,7 @@ spinal nerve plexus uberon UBERON:0001813 + spinal nerve plexus @@ -126835,8 +127196,14 @@ hypothalamus http://upload.wikimedia.org/wikipedia/commons/9/9f/LocationOfHypothalamus.jpg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.0/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.0/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -127843,8 +128210,12 @@ pineal body http://upload.wikimedia.org/wikipedia/commons/6/6b/Illu_pituitary_pineal_glands.jpg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -128343,8 +128714,12 @@ optic tract http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray773.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -133197,8 +133572,12 @@ ). In hagfish, lamprey, and shark it is a relatively small structure, but in teleost fish it is greatly expanded, in some cases becoming the largest structure in the brain. (See the adjoining drawing of a codfish brain.) In amphibians, reptiles, and especially birds it is also a very significant component, but in mammals it is dwarfed by the massive expansion of the cerebral cortex. superior colliculus http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -133380,8 +133759,12 @@ inferior colliculus http://upload.wikimedia.org/wikipedia/commons/2/26/Gray711.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -133518,8 +133901,12 @@ red nucleus http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -135274,6 +135661,7 @@ A thoracic nerve that nerve travels into the abdomen, where its fibers synapse in the renal ganglia. + in MA this is part of the kidney but this leads to unsatisfiability EMAPA:29691 FMA:6283 @@ -135289,6 +135677,7 @@ uberon thoracic splanchnic nerve UBERON:0001964 + least splanchnic nerve @@ -137662,7 +138051,7 @@ placenta http://upload.wikimedia.org/wikipedia/commons/6/66/Placenta.jpg http://upload.wikimedia.org/wikipedia/commons/f/f1/Placenta.svg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Placenta.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/placenta-full-term-female/v1.0/assets/VH_F_Placenta.glb @@ -139300,7 +139689,7 @@ A cable-like bundle of peripheral axons (the long, slender projections of neurons). A nerve provides a common pathway for the electrochemical nerve impulses that are transmitted along each of the axons. Nerves are found only in the peripheral nervous system. In the central nervous system, the analogous structures are known as tracts[WP]. - UBERON:0001021 + Neural tree (organ) which is directly continuous with the neuraxis. Examples: phrenic nerve, radial nerve, ilioinguinal nerve, sciatic nerve. UBERON:0003377 nerve part of peripheral nervous system @@ -139591,8 +139980,14 @@ medulla of lymph node - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-left/v1.0/assets/NIH_F_Lymph_Node_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-right/v1.0/assets/NIH_F_Lymph_Node_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.2/assets/NIH_F_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.2/assets/NIH_M_Lymph_Node.glb @@ -140027,8 +140422,12 @@ pulmonary artery - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png @@ -140157,6 +140556,7 @@ The superior hypogastric plexus (in older texts, hypogastric plexus or presacral nerve) is a plexus of nerves situated on the vertebral bodies below the bifurcation of the aorta. [WP,unvetted]. check relationship with generic hypogastric nerve/plexus + EMAPA:19274 FMA:6642 MA:0001142 @@ -140170,6 +140570,7 @@ hypogastric plexus plexus hypogastricus inferior UBERON:0002013 + superior hypogastric nerve plexus http://upload.wikimedia.org/wikipedia/commons/7/77/Gray838.png @@ -140218,6 +140619,7 @@ The inferior hypogastric plexus (pelvic plexus in some texts) is a plexus of nerves that supplies the viscera of the pelvic cavity. The inferior hypogastric plexus is a paired structure, with each situated on the side of the rectum in the male, and at the sides of the rectum and vagina in the female. [WP,unvetted]. check relationship with generic hypogastric nerve/plexus + EMAPA:19275 FMA:6643 MA:0001141 @@ -140235,6 +140637,7 @@ uberon plexus hypogastricus inferior UBERON:0002014 + inferior hypogastric nerve plexus http://upload.wikimedia.org/wikipedia/commons/7/77/Gray838.png @@ -140343,10 +140746,18 @@ kidney capsule - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.2/assets/VH_F_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.2/assets/VH_F_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb https://upload.wikimedia.org/wikipedia/commons/6/69/Illu_kidney.jpg @@ -140457,8 +140868,12 @@ pulmonary vein - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png @@ -140801,7 +141216,6 @@ FMA:6720 FMA:80284 GAID:825 - HBA:9340 MA:0001088 MBA:717 MESH:D000055 @@ -141529,6 +141943,7 @@ The internal carotid plexus (carotid plexus) is situated on the lateral side of the internal carotid artery, and in the plexus there occasionally exists a small gangliform swelling, the carotid ganglion, on the under surface of the artery. Postganglionic sympathetic fibres ascend from the superior cervical ganglion, along the walls of the internal carotid artery, to enter the internal carotid plexus. These fibres then distribute to deep structures, which include the levator palpebrae superioris and pupillary dilator muscles. Some of the fibres from the internal carotid plexus converge to form the deep petrosal nerve. The internal carotid plexus communicates with the semilunar ganglion, the abducent nerve, and the sphenopalatine ganglion; it distributes filaments to the wall of the carotid artery, and also communicates with the tympanic branch of the glossopharyngeal nerve. [WP,unvetted]. + EMAPA:37618 FMA:67533 MA:0001162 @@ -141540,6 +141955,7 @@ plexus caroticus internus uberon UBERON:0002024 + internal carotid nerve plexus http://upload.wikimedia.org/wikipedia/commons/a/a5/Gray840.png @@ -143350,8 +143766,12 @@ substantia nigra http://upload.wikimedia.org/wikipedia/commons/5/5f/Midbraincrosssection.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -144544,8 +144964,14 @@ Snakes and limbless lizards typically possess only the right lung as a major respiratory organ; the left lung is greatly reduced, or even absent. Amphisbaenians, however, have the opposite arrangement, with a major left lung, and a reduced or absent right lung [WP] lung https://github.com/obophenotype/uberon/issues/701 - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.0/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb @@ -144650,6 +145076,13 @@ vasculature http://upload.wikimedia.org/wikipedia/commons/2/29/Circulatory_System_en.svg + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb @@ -146255,7 +146688,7 @@ umbilical vein http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray502.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Placenta.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/placenta-full-term-female/v1.0/assets/VH_F_Placenta.glb @@ -147335,8 +147768,12 @@ right cardiac atrium http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb @@ -147443,8 +147880,12 @@ left cardiac atrium http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb @@ -147556,8 +147997,12 @@ heart right ventricle http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb @@ -147997,8 +148442,12 @@ heart left ventricle http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb @@ -148950,8 +149399,12 @@ interventricular septum http://upload.wikimedia.org/wikipedia/commons/9/96/Gray498.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb @@ -149182,10 +149635,13 @@ skin of body http://upload.wikimedia.org/wikipedia/commons/6/6d/Skin.svg - https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Skin.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_M_Skin.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Skin.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-skin.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/skin-female/v1.0/assets/VH_F_Skin.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/skin-female/v1.1/assets/VH_F_Skin.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/skin-female/v1.2/assets/VH_F_Skin.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/skin-female/v1.3/assets/3d-vh-f-skin.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/skin-male/v1.0/assets/VH_M_Skin.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/skin-male/v1.1/assets/VH_M_Skin.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/skin-male/v1.2/assets/VH_M_Skin.glb @@ -150128,9 +150584,12 @@ spleen - https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Spleen.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spleen.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spleen.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-female/v1.0/assets/VH_F_Spleen.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-female/v1.1/assets/VH_F_Spleen.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-female/v1.2/assets/VH_F_Spleen.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-male/v1.0/assets/VH_M_Spleen.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-male/v1.1/assets/VH_M_Spleen.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-male/v1.2/assets/VH_M_Spleen.glb https://upload.wikimedia.org/wikipedia/commons/d/d6/Illu_spleen.jpg @@ -150290,8 +150749,10 @@ liver - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb https://upload.wikimedia.org/wikipedia/commons/6/64/Leber_Schaf.jpg @@ -150469,8 +150930,9 @@ small intestine http://upload.wikimedia.org/wikipedia/commons/8/82/Stomach_colon_rectum_diagram.svg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Small_Intestine.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Small_Intestine.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-female/v1.1/assets/VH_F_Small_Intestine.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.0/assets/VH_M_Small_Intestine.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.1/assets/VH_M_Small_Intestine.glb @@ -151227,8 +151689,9 @@ duodenum http://upload.wikimedia.org/wikipedia/commons/b/b3/Tractus_intestinalis_duodenum.svg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Small_Intestine.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Small_Intestine.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-female/v1.1/assets/VH_F_Small_Intestine.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.0/assets/VH_M_Small_Intestine.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.1/assets/VH_M_Small_Intestine.glb @@ -151345,8 +151808,9 @@ jejunum http://upload.wikimedia.org/wikipedia/commons/3/3d/Illu_small_intestine.jpg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Small_Intestine.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Small_Intestine.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-female/v1.1/assets/VH_F_Small_Intestine.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.0/assets/VH_M_Small_Intestine.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.1/assets/VH_M_Small_Intestine.glb @@ -151461,8 +151925,9 @@ ileum http://upload.wikimedia.org/wikipedia/commons/3/3d/Illu_small_intestine.jpg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Small_Intestine.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Small_Intestine.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-female/v1.1/assets/VH_F_Small_Intestine.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.0/assets/VH_M_Small_Intestine.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.1/assets/VH_M_Small_Intestine.glb @@ -153246,8 +153711,12 @@ tricuspid valve http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb @@ -153366,8 +153835,12 @@ mitral valve http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb @@ -153582,8 +154055,12 @@ Human variation: It is normally tricuspid (with three leaflets), although in 1% of the population it is found to be congenitally bicuspid (two leaflets) aortic valve http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb @@ -154881,8 +155358,12 @@ pulmonary valve http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb @@ -155616,8 +156097,12 @@ pontine nuclear group http://upload.wikimedia.org/wikipedia/commons/d/dc/Lower_pons_horizontal_KB.svg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -157478,8 +157963,13 @@ right lung http://upload.wikimedia.org/wikipedia/commons/3/32/Gray972.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb @@ -157547,8 +158037,13 @@ left lung http://upload.wikimedia.org/wikipedia/commons/d/dd/Gray973.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb @@ -157723,8 +158218,13 @@ UBERON:0002170 upper lobe of right lung - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb @@ -157844,8 +158344,13 @@ UBERON:0002171 lower lobe of right lung - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb @@ -158086,8 +158591,13 @@ Called 'middle lobe of lung' in FMA middle lobe of right lung http://upload.wikimedia.org/wikipedia/commons/3/32/Gray972.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb @@ -158247,8 +158757,13 @@ right main bronchus http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-main-bronchus.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-main-bronchus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/main-bronchus-female/v1.0/assets/3d-vh-f-main-bronchus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/main-bronchus-male/v1.0/assets/3d-vh-m-main-bronchus.glb @@ -158339,8 +158854,13 @@ left main bronchus http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-main-bronchus.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-main-bronchus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/main-bronchus-female/v1.0/assets/3d-vh-f-main-bronchus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/main-bronchus-male/v1.0/assets/3d-vh-m-main-bronchus.glb @@ -158691,8 +159211,8 @@ main bronchus - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-main-bronchus.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-main-bronchus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/main-bronchus-female/v1.0/assets/3d-vh-f-main-bronchus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/main-bronchus-male/v1.0/assets/3d-vh-m-main-bronchus.glb @@ -158922,8 +159442,13 @@ segmental bronchus http://upload.wikimedia.org/wikipedia/commons/d/df/Illu_quiz_lung05.jpg - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb @@ -159007,8 +159532,14 @@ bronchus http://upload.wikimedia.org/wikipedia/commons/1/18/Respiratory_system_complete_numbered.svg - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.0/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb @@ -159349,10 +159880,18 @@ UBERON:0002189 outer cortex of kidney - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.2/assets/VH_F_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.2/assets/VH_F_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb @@ -159828,8 +160367,14 @@ capsule of lymph node - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-left/v1.0/assets/NIH_F_Lymph_Node_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-right/v1.0/assets/NIH_F_Lymph_Node_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.2/assets/NIH_F_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.2/assets/NIH_M_Lymph_Node.glb https://upload.wikimedia.org/wikipedia/commons/9/92/Lymphknoten_(Schwein).jpg @@ -161075,8 +161620,8 @@ vasculature of eye - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb @@ -161818,6 +162363,7 @@ A continuation of the neuron projection bundle component of a nerve inside, crossing or immediately outside the central nervous system. We consider cranial nerve roots to be primarily CNS structures, but model spinal nerve roots as PNS structures, due to the existence of ganglia on the roots. + The continuation of the neurite bundle and associated glia of a nerve, inside the central nervous system[FBbt:00007602, FBC:DOS]. FMA has 'central zone of nerve' which is the superclass of cranial nerve tracts, which the FMA sometimes calls roots FMA:5981 @@ -161831,6 +162377,7 @@ radix nervi uberon UBERON:0002211 + nerve root @@ -164307,8 +164854,8 @@ spinal cord http://upload.wikimedia.org/wikipedia/commons/5/58/Spinal_cord_direv.svg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb @@ -166306,6 +166853,7 @@ The ventral roots contain efferent motor axons. Similar to the dorsal roots, the ventral roots continue out from the spinal column, and meet and mix with their corresponding dorsal nerve root at a point after the ganglion. + The efferent motor root of a spinal nerve. At its distal end, the ventral root joins with the dorsal root to form a mixed spinal nerve[Wikipedia:Anterior_root_of_spinal_nerve]. FMA:77516 xref is a 'general anatomical term'. We xref both to ensure equivalence. ventral root @@ -166339,6 +166887,7 @@ ventral roots ventral spinal nerve root UBERON:0002260 + @@ -166874,8 +167423,14 @@ olfactory bulb http://upload.wikimedia.org/wikipedia/commons/d/d2/1543%2CVesalius%27OlfactoryBulbs.jpg http://upload.wikimedia.org/wikipedia/commons/f/f9/1543,Vesalius%27OlfactoryBulbs.jpg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.0/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.0/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -167212,8 +167767,14 @@ anterior olfactory nucleus http://upload.wikimedia.org/wikipedia/commons/b/b1/Human_brainstem_anterior_view_2_description.JPG - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.0/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.0/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -170359,7 +170920,7 @@ A chamber of an organ with cavitated organ parts. Examples: right ventricle of heart, lateral ventricle of brain. - FMA:82553 + Wikipedia:Ventricle_of_the_larynx uberon UBERON:0002300 @@ -171142,7 +171703,7 @@ - UBERON:0004083 + uberon UBERON:0002311 obsoleted based on neuronames:681 @@ -173015,7 +173576,7 @@ See notes for connecting stalk umbilical cord http://upload.wikimedia.org/wikipedia/commons/f/f3/Umbilicalcord.jpg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Placenta.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/placenta-full-term-female/v1.0/assets/VH_F_Placenta.glb @@ -173118,8 +173679,12 @@ pulmonary trunk - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png @@ -173384,8 +173949,12 @@ corpus callosum http://upload.wikimedia.org/wikipedia/commons/a/aa/Gray733.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -176788,7 +177357,8 @@ prostate gland http://upload.wikimedia.org/wikipedia/commons/a/a1/Prostatelead.jpg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb @@ -177166,9 +177736,12 @@ thymus - https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Thymus.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Thymus.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Thymus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.0/assets/VH_F_Thymus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.1/assets/VH_F_Thymus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.2/assets/VH_F_Thymus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.0/assets/VH_M_Thymus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.1/assets/VH_M_Thymus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.2/assets/VH_M_Thymus.glb https://upload.wikimedia.org/wikipedia/commons/c/cf/Illu_thymus.jpg @@ -177395,7 +177968,6 @@ Either of the two small almond-shaped masses of lymph tissue found on either side of the oropharynx. the term 'tonsil' can be ambiguous, sometimes refering specifically to the palatine tonsil, sometimes generically to include the cecal tonsils of avians. This class represents lymphoid tissue that is part of the tonsillar ring, in the mouth/throat region - BTO:0001387 CALOHA:TS-1053 EFO:0001401 @@ -177416,7 +177988,6 @@ Mandel UBERON:0002372 - tonsil @@ -177474,6 +178045,7 @@ Tonsils on the left and right sides at the back of the throat. one of the mucosa-associated lymphoid tissues (MALT), located at the entrance to the upper respiratory and gastrointestinal tracts to protect the body from the entry of exogenous material through mucosal sites[WP]. + tonsillar fossa develops from dorsal portion of pouch 2. Note that pharyngeal and lingual tonsils do not develop from pharyngeal pouches tonsil BTO:0004714 @@ -177495,6 +178067,7 @@ tonsilla palatina UBERON:0002373 + palatine tonsil https://upload.wikimedia.org/wikipedia/commons/f/f6/Illu_mouth.jpg @@ -177679,8 +178252,8 @@ cricoid cartilage http://upload.wikimedia.org/wikipedia/commons/5/54/Gray1194.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-larynx.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-larynx.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.0/assets/3d-vh-f-larynx.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.0/assets/3d-vh-m-larynx.glb @@ -182849,8 +183422,12 @@ fourth ventricle http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray734.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -183725,7 +184302,7 @@ - UBERON:0006964 + uberon UBERON:0002431 obsolete pars anterior @@ -188170,6 +188747,7 @@ The largest cutaneous branch of the femoral nerve. [WP,unvetted]. + EMAPA:36625 FMA:45262 MA:0002761 @@ -188178,6 +188756,7 @@ uberon nervus saphenus UBERON:0002475 + saphenous nerve http://upload.wikimedia.org/wikipedia/commons/d/de/Gray827.png @@ -189506,8 +190085,12 @@ one of the two types of osseous tissue that form bones. Compared to compact bone, which is the other type of osseous tissue, it has a higher surface area but is less dense, softer, weaker, and less stiff. It typically occurs at the ends of long bones, proximal to joints and within the interior of vertebrae. Cancellous bone is highly vascular and frequently contains red bone marrow where hematopoiesis, which is the production of blood cells, occurs. The primary anatomical and functional unit of cancellous bone is the trabecula. trabecular bone tissue http://upload.wikimedia.org/wikipedia/commons/3/34/Illu_compact_spongy_bone.jpg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.0/assets/VH_F_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.1/assets/VH_F_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.2/assets/VH_F_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.0/assets/VH_M_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.1/assets/VH_M_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.2/assets/VH_M_Pelvis.glb @@ -189678,7 +190261,8 @@ UBERON:0002485 prostate duct - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb @@ -190355,8 +190939,12 @@ papillary muscle of heart - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb https://upload.wikimedia.org/wikipedia/commons/8/87/Papillary_muscles.png @@ -191475,8 +192063,10 @@ mesenteric lymph node - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.2/assets/NIH_F_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.2/assets/NIH_M_Lymph_Node.glb @@ -194120,10 +194710,10 @@ Postcranial axial skeleton that is unpaired and located on the sagittal plane of the organism. - EFO:0000950 - MAT:0000277 - MIAA:0000277 - ZFA:0001123 + + + + axial fin skeleton unpaired fin skeleton uberon @@ -194277,7 +194867,7 @@ - WBbt:0005332 + EFO:0000901 MAT:0000344 MIAA:0000344 @@ -195072,8 +195662,8 @@ A multi-tissue structure that is part of a superior colliculus. - BIRNLEX:1014 - FMA:85592 + + uberon segment of superior colliculus superior colliculus segment @@ -195975,8 +196565,12 @@ UBERON:0002564 lateral orbital gyrus - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -196550,8 +197144,12 @@ UBERON:0002570 medial orbital gyrus - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -196851,8 +197449,8 @@ A regional part of brain that is part of a inferior olivary complex [Automatically generated definition]. - BIRNLEX:1052 - FMA:71259 + + inferior olivary complex segment segment of inferior olivary complex uberon @@ -196961,8 +197559,12 @@ temporal pole http://upload.wikimedia.org/wikipedia/commons/e/e3/Human_brain_lateral_view_description.JPG - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -197129,8 +197731,8 @@ A regional part of brain that is part of a medullary reticular formation [Automatically generated definition]. - BIRNLEX:1060 - FMA:73730 + + medullary reticular formation segment segment of medullary reticular formation uberon @@ -197320,8 +197922,12 @@ postcentral gyrus - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb https://upload.wikimedia.org/wikipedia/commons/6/66/Postcentral_gyrus.png @@ -197657,8 +198263,8 @@ A regional part of brain that is part of a vestibular nuclear complex [Automatically generated definition]. - BIRNLEX:1080 - FMA:71267 + + segment of vestibular nuclear complex vestibular nuclear complex segment uberon @@ -200411,11 +201017,11 @@ in GO - BIRNLEX:1152 - FMA:67368 - GAID:748 - GO:0033268 - NCIT:C33172 + + + + + Wikipedia:Node_of_ranvier ranvier node ranvier's node @@ -201224,11 +201830,11 @@ A regional part of brain that is part of a cerebral cortex [Automatically generated definition]. TODO - check MA term - BIRNLEX:1173 - EMAPA:35589 - FMA:242193 - MA:0000187 - SCTID:119408004 + + + + + UBERON:0003208 cerebral cortex part neocortex region @@ -201416,8 +202022,8 @@ A regional part of brain that is part of a cochlear nuclear complex [Automatically generated definition]. - BIRNLEX:1195 - FMA:83952 + + cochlear nuclear complex segment segment of cochlear nuclear complex uberon @@ -201627,8 +202233,12 @@ Neuronames includes the substantia nigra, crus cerebri and midbrain tegmentum as substructures of the cerebral peduncle; the mouse atlases only include the crus cerebri as the cerebral peduncle (MM) cerebral peduncle http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray689.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -202196,8 +202806,12 @@ UBERON:0002629 triangular part of inferior frontal gyrus - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -203135,8 +203749,8 @@ A multi-tissue structure that is part of a midbrain tegmentum. - BIRNLEX:1227 - FMA:62399 + + midbrain tegmentum segment segment of midbrain tegmentum uberon @@ -203964,8 +204578,12 @@ UBERON:0002644 intermediate orbital gyrus - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -205386,8 +206004,12 @@ UBERON:0002657 posterior parahippocampal gyrus - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -205773,8 +206395,12 @@ superior frontal gyrus http://upload.wikimedia.org/wikipedia/commons/5/50/Superior_frontal_gyrus.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -207343,8 +207969,8 @@ A regional part of brain that is part of a medullary raphe nuclear complex [Automatically generated definition]. - BIRNLEX:1349 - FMA:83951 + + medullary raphe nuclear complex segment segment of medullary raphe nuclear complex uberon @@ -207378,9 +208004,9 @@ A regional part of brain that is part of a medulla oblongata [Automatically generated definition]. - BIRNLEX:1355 - FMA:71011 - SCTID:119241003 + + + medullary oblongata segment segment of medulla oblongata uberon @@ -207585,8 +208211,8 @@ A regional part of brain that is part of a metencephalon [Automatically generated definition]. - BIRNLEX:1361 - FMA:67942 + + metencephalon subdivision segment of metencephalon uberon @@ -210411,8 +211037,12 @@ middle frontal gyrus http://upload.wikimedia.org/wikipedia/commons/7/7f/Middle_frontal_gyrus.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -210523,8 +211153,12 @@ precentral gyrus http://upload.wikimedia.org/wikipedia/commons/e/eb/Ba4.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -214079,9 +214713,9 @@ A regional part of brain that is part of a thalamus [Automatically generated definition]. - BIRNLEX:1517 - FMA:67705 - SCTID:119406000 + + + segment of thalamus thalamus segment uberon @@ -214902,8 +215536,12 @@ UBERON:0002738 isthmus of cingulate gyrus - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -215282,8 +215920,12 @@ posterior cingulate gyrus http://upload.wikimedia.org/wikipedia/commons/f/fe/Gray727.svg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -216269,8 +216911,12 @@ inferior temporal gyrus http://upload.wikimedia.org/wikipedia/commons/3/35/Gray726.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -216808,8 +217454,12 @@ anterior cingulate gyrus http://upload.wikimedia.org/wikipedia/commons/2/22/Gray727_anterior_cingulate_cortex.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -216871,8 +217521,8 @@ A regional part of brain that is part of a epithalamus [Automatically generated definition]. - BIRNLEX:1607 - FMA:62013 + + epithalamus segment segment of epithalamus uberon @@ -218420,8 +219070,12 @@ superior temporal gyrus http://upload.wikimedia.org/wikipedia/commons/1/1d/Superior_temporal_gyrus.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -218594,8 +219248,12 @@ middle temporal gyrus http://upload.wikimedia.org/wikipedia/commons/4/49/WOROI_60_loc.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -219121,8 +219779,8 @@ - BIRNLEX:1672 - FMA:77617 + + GAID:669 uberon UBERON:0002777 @@ -219364,8 +220022,8 @@ A regional part of brain that is part of a forebrain [Automatically generated definition]. - BIRNLEX:1677 - FMA:61996 + + forebrain segment segment of forebrain uberon @@ -219745,9 +220403,9 @@ A regional part of brain that is part of a diencephalon [Automatically generated definition]. - BIRNLEX:1685 - FMA:62005 - SCTID:119264001 + + + diencephalon segment uberon UBERON:0002784 @@ -219774,8 +220432,8 @@ A multi-tissue structure that is part of a lateral hypothalamic area. - BIRNLEX:1687 - FMA:62312 + + lateral hypothalamic region segment segment of lateral hypothalamic region uberon @@ -220277,8 +220935,8 @@ A regional part of brain that is part of a posterior hypothalamic region [Automatically generated definition]. - BIRNLEX:1697 - FMA:62311 + + posterior hypothalamic region segment segment of posterior hypothalamic region uberon @@ -220394,8 +221052,8 @@ A regional part of brain that is part of a telencephalon [Automatically generated definition]. - BIRNLEX:1700 - FMA:62374 + + segment of telencephalon telencephalon segment uberon @@ -221923,8 +222581,14 @@ uberon UBERON:0002812 left cerebral hemisphere - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.0/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.0/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -221979,8 +222643,14 @@ uberon UBERON:0002813 right cerebral hemisphere - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.0/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.0/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -229403,8 +230073,12 @@ occipital pole http://upload.wikimedia.org/wikipedia/commons/e/e3/Human_brain_lateral_view_description.JPG - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -230075,8 +230749,12 @@ parietal operculum http://upload.wikimedia.org/wikipedia/commons/b/b3/Operculum.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -230649,8 +231327,8 @@ A regional part of brain that is part of a inferior colliculus [Automatically generated definition]. - BIRNLEX:4036 - FMA:77871 + + inferior colliculus segment segment of inferior colliculus uberon @@ -233028,8 +233706,12 @@ lingual gyrus http://upload.wikimedia.org/wikipedia/commons/a/a1/Gray727_lingual_gyrus.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -233451,10 +234133,10 @@ - UBERON:0002037 - BIRNLEX:748 - FMA:256150 - SCTID:119242005 + + + + segment of cerebellum uberon subdivision of cerebellum @@ -233504,8 +234186,12 @@ UBERON:0002947 frontal operculum - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -233562,8 +234248,12 @@ UBERON:0002948 superior occipital gyrus - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -233722,9 +234412,9 @@ A regional part of brain that is part of a midbrain [Automatically generated definition]. - BIRNLEX:763 - FMA:61997 - SCTID:119239004 + + + midbrain segment segment of midbrain uberon @@ -233758,8 +234448,8 @@ A regional part of brain that is part of a intermediate hypothalamic region [Automatically generated definition]. - BIRNLEX:767 - FMA:62310 + + intermediate hypothalamic region segment segment of intermediate hypothalamic region uberon @@ -235086,8 +235776,8 @@ A regional part of brain that is part of a midbrain tectum [Automatically generated definition]. - BIRNLEX:795 - FMA:62398 + + midbrain tectum segment segment of midbrain tectum uberon @@ -236587,8 +237277,12 @@ UBERON:0002980 opercular part of inferior frontal gyrus - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -237436,12 +238130,12 @@ - GO:0005883 - BIRNLEX:846 - FMA:63859 - NCIT:C13263 - NIF_Subcellular:sao1316272517 - UMLS:C0027834 + + + + + + Wikipedia:Neurofilament neuronal intermediate filament uberon @@ -238633,14 +239327,14 @@ - GO:0005882 - BIRNLEX:879 - FMA:63851 - GAID:1079 - MESH:A11.284.195.190.750.410 - NCIT:C13248 - NIF_Subcellular:sao952483289 - UMLS:C0021770 + + + + + + + + Wikipedia:Intermediate_filament uberon UBERON:0003000 @@ -238765,13 +239459,13 @@ - FMA:63850 - GAID:1080 - GO:0005884 - MESH:A11.284.195.190.750.510 - NCIT:C13255 - NIF_Subcellular:sao2006047981 - UMLS:C0025979 + + + + + + + Wikipedia:Microfilament actin filament microfilament @@ -238784,7 +239478,7 @@ - UMLS:C0025979 + ncithesaurus:Actin_Filament @@ -240552,8 +241246,12 @@ subcallosal area http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -240729,7 +241427,7 @@ - FMA:68603 + uberon UBERON:0003022 obsolete lobe parts of cerebral cortex @@ -240799,8 +241497,12 @@ pontine tegmentum - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb https://upload.wikimedia.org/wikipedia/commons/9/9c/Brainstem_Abducens.png @@ -241930,8 +242632,8 @@ - BIRNLEX:959 - FMA:72547 + + segment of cerebellar white matter uberon UBERON:0003035 @@ -243409,8 +244111,8 @@ A regional part of brain that is part of a pretectal region [Automatically generated definition]. - BIRNLEX:993 - FMA:74519 + + pretectal region segment segment of pretectal region uberon @@ -243444,9 +244146,9 @@ A regional part of brain that is part of a hypothalamus [Automatically generated definition]. - BIRNLEX:995 - FMA:67706 - SCTID:360454003 + + + hypothalamus segment segment of hypothalamus uberon @@ -251203,8 +251905,12 @@ trachea http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-trachea.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-trachea.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.0/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/trachea-female/v1.0/assets/3d-vh-f-trachea.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/trachea-male/v1.0/assets/3d-vh-m-trachea.glb @@ -251600,9 +252306,9 @@ - FBbt:00005751 - HAO:0000409 - TGMA:0000090 + + + uberon UBERON:0003132 obsolete arthropod hypopharynx @@ -251905,8 +252611,8 @@ - FBbt:00000002 - HAO:0000988 + + uberon UBERON:0003136 arthropod specific groupings belong in separate ontology @@ -251919,8 +252625,8 @@ - FBbt:00000009 - HAO:0000104 + + uberon UBERON:0003137 arthropod specific groupings belong in separate ontology @@ -251933,8 +252639,8 @@ - FBbt:00000016 - HAO:0001013 + + uberon UBERON:0003138 arthropod specific groupings belong in separate ontology @@ -251947,8 +252653,8 @@ - FBbt:00001728 - HAO:0000462 + + uberon UBERON:0003139 arthropod specific groupings belong in separate ontology @@ -251961,8 +252667,8 @@ - FBbt:00001741 - HAO:0000463 + + uberon UBERON:0003140 arthropod specific groupings belong in separate ontology @@ -251975,8 +252681,8 @@ - FBbt:00001746 - HAO:0000460 + + uberon UBERON:0003141 obsolete larval abdomen @@ -252129,8 +252835,8 @@ - FBbt:00003005 - HAO:0000089 + + uberon UBERON:0003144 arthropod specific groupings belong in separate ontology @@ -252143,8 +252849,8 @@ - FBbt:00003018 - HAO:0000090 + + uberon UBERON:0003145 arthropod specific groupings belong in separate ontology @@ -252157,8 +252863,8 @@ - FBbt:00003023 - HAO:0000088 + + uberon UBERON:0003146 obsolete adult arthropod abdomen @@ -252171,8 +252877,8 @@ That part of the integument of an insect which surrounds the spiracles. - FBbt:00003121 - HAO:0000712 + + uberon rim UBERON:0003147 @@ -252199,8 +252905,8 @@ Hardened portions of arthropod exoskeletons. - FBbt:00004475 - HAO:0000909 + + Wikipedia:Sclerite uberon plate @@ -252227,8 +252933,8 @@ - FBbt:00004476 - HAO:0001005 + + abdominal tergite uberon UBERON:0003149 @@ -252248,8 +252954,8 @@ - FBbt:00004477 - HAO:0000955 + + abdominal sternite uberon UBERON:0003150 @@ -252269,8 +252975,8 @@ - FBbt:00004478 - HAO:0000345 + + uberon UBERON:0003151 arthropod specific groupings belong in separate ontology @@ -252284,8 +252990,8 @@ The lamella that serves as the site of attachment of the longitudinal flight muscle [HAO]. - FBbt:00004480 - HAO:0000716 + + uberon UBERON:0003152 arthropod specific groupings belong in separate ontology @@ -252339,8 +253045,8 @@ - FBbt:00004491 - HAO:0000371 + + uberon cheek UBERON:0003154 @@ -252396,8 +253102,8 @@ - FBbt:00004494 - HAO:0000790 + + uberon UBERON:0003156 arthropod specific groupings belong in separate ontology @@ -252410,8 +253116,8 @@ - FBbt:00004496 - HAO:0000776 + + uberon UBERON:0003157 arthropod specific groupings belong in separate ontology @@ -252424,8 +253130,8 @@ - FBbt:00004501 - HAO:0000999 + + uberon UBERON:0003158 arthropod specific groupings belong in separate ontology @@ -252438,8 +253144,8 @@ - FBbt:00004502 - HAO:0000126 + + uberon UBERON:0003159 arthropod specific groupings belong in separate ontology @@ -252452,8 +253158,8 @@ - FBbt:00004503 - HAO:0000768 + + uberon UBERON:0003160 arthropod specific groupings belong in separate ontology @@ -252548,8 +253254,8 @@ TODO - FBbt:00004520 - HAO:0000639 + + uberon UBERON:0003163 obsolete mouthpart @@ -252561,8 +253267,8 @@ - FBbt:00004521 - HAO:0000212 + + uberon UBERON:0003164 arthropod specific groupings belong in separate ontology @@ -252575,8 +253281,8 @@ - FBbt:00004526 - HAO:0000201 + + uberon atrium UBERON:0003165 @@ -252596,8 +253302,8 @@ - FBbt:00004534 - HAO:0000804 + + uberon theca UBERON:0003166 @@ -252617,8 +253323,8 @@ - FBbt:00004536 - HAO:0000457 + + uberon UBERON:0003167 arthropod specific groupings belong in separate ontology @@ -252631,8 +253337,8 @@ - FBbt:00004544 - HAO:0000534 + + uberon UBERON:0003168 arthropod specific groupings belong in separate ontology @@ -252645,8 +253351,8 @@ - FBbt:00004548 - HAO:0000195 + + uberon UBERON:0003169 arthropod specific groupings belong in separate ontology @@ -252659,8 +253365,8 @@ - FBbt:00004552 - HAO:0001006 + + uberon UBERON:0003170 arthropod specific groupings belong in separate ontology @@ -252673,8 +253379,8 @@ - FBbt:00004554 - HAO:0000303 + + uberon UBERON:0003171 arthropod specific groupings belong in separate ontology @@ -252687,8 +253393,8 @@ - FBbt:00004556 - HAO:0000299 + + uberon UBERON:0003172 arthropod specific groupings belong in separate ontology @@ -252701,8 +253407,8 @@ - FBbt:00004561 - HAO:0000853 + + uberon UBERON:0003173 arthropod specific groupings belong in separate ontology @@ -252715,8 +253421,8 @@ - FBbt:00004570 - HAO:0000367 + + uberon UBERON:0003174 arthropod specific groupings belong in separate ontology @@ -252729,8 +253435,8 @@ - FBbt:00004582 - HAO:0000815 + + uberon UBERON:0003175 arthropod specific groupings belong in separate ontology @@ -252743,8 +253449,8 @@ - FBbt:00004585 - HAO:0000120 + + uberon UBERON:0003176 arthropod specific groupings belong in separate ontology @@ -252757,8 +253463,8 @@ - FBbt:00004586 - HAO:0000758 + + uberon UBERON:0003177 arthropod specific groupings belong in separate ontology @@ -252771,8 +253477,8 @@ - FBbt:00004588 - HAO:0000786 + + uberon postscutellum UBERON:0003178 @@ -252792,8 +253498,8 @@ - FBbt:00004595 - HAO:0000726 + + uberon UBERON:0003179 arthropod specific groupings belong in separate ontology @@ -252806,8 +253512,8 @@ - FBbt:00004597 - HAO:0000094 + + uberon mesopleurite UBERON:0003180 @@ -252827,8 +253533,8 @@ - FBbt:00004601 - HAO:0000920 + + uberon UBERON:0003181 arthropod specific groupings belong in separate ontology @@ -252841,8 +253547,8 @@ - FBbt:00004603 - HAO:0000725 + + uberon UBERON:0003182 obsolete pleural suture @@ -252854,8 +253560,8 @@ - FBbt:00004604 - HAO:0000649 + + uberon UBERON:0003183 obsolete notopleural suture @@ -252867,8 +253573,8 @@ - FBbt:00004619 - HAO:0000547 + + uberon mesothoracic sternal apophysis UBERON:0003184 @@ -252888,8 +253594,8 @@ - FBbt:00004638 - HAO:0000592 + + uberon metathoracic sternal apophysis UBERON:0003185 @@ -252909,8 +253615,8 @@ - FBbt:00004641 - HAO:0000228 + + uberon UBERON:0003186 arthropod specific groupings belong in separate ontology @@ -252923,8 +253629,8 @@ - FBbt:00004653 - HAO:0000820 + + uberon UBERON:0003187 arthropod specific groupings belong in separate ontology @@ -252937,8 +253643,8 @@ - FBbt:00004654 - HAO:0000153 + + uberon UBERON:0003188 arthropod specific groupings belong in separate ontology @@ -252951,8 +253657,8 @@ - FBbt:00004658 - HAO:0001043 + + uberon UBERON:0003189 arthropod specific groupings belong in separate ontology @@ -252965,8 +253671,8 @@ - FBbt:00004659 - HAO:0000288 + + uberon UBERON:0003190 obsolete empodium @@ -252978,8 +253684,8 @@ - FBbt:00004730 - HAO:0000993 + + uberon UBERON:0003191 arthropod specific groupings belong in separate ontology @@ -252992,8 +253698,8 @@ - FBbt:00004737 - HAO:0000159 + + uberon UBERON:0003192 arthropod specific groupings belong in separate ontology @@ -253006,8 +253712,8 @@ - FBbt:00004744 - HAO:0000157 + + uberon UBERON:0003193 arthropod specific groupings belong in separate ontology @@ -253045,8 +253751,8 @@ - FBbt:00004765 - HAO:0000236 + + uberon UBERON:0003195 arthropod specific groupings belong in separate ontology @@ -253059,8 +253765,8 @@ - FBbt:00004769 - HAO:0001091 + + uberon intervein UBERON:0003196 @@ -253080,8 +253786,8 @@ - FBbt:00004770 - HAO:0000226 + + uberon UBERON:0003197 arthropod specific groupings belong in separate ontology @@ -253094,8 +253800,8 @@ - FBbt:00004850 - HAO:0000091 + + uberon UBERON:0003198 arthropod specific groupings belong in separate ontology @@ -253166,8 +253872,8 @@ - FBbt:00004920 - HAO:0000706 + + uberon UBERON:0003200 obsolete pedicel @@ -253245,8 +253951,8 @@ - FBbt:00005091 - HAO:0000142 + + uberon UBERON:0003203 arthropod specific groupings belong in separate ontology @@ -253259,8 +253965,8 @@ - FBbt:00005750 - HAO:0000301 + + uberon UBERON:0003204 arthropod specific groupings belong in separate ontology @@ -253273,9 +253979,9 @@ - FBbt:00005811 - HAO:0000151 - ncithesaurus:Articulation + + + uberon UBERON:0003205 incorrect grouping @@ -253288,9 +253994,9 @@ - FBbt:00005813 - FMA:75428 - HAO:0000143 + + + uberon UBERON:0003206 incorrect grouping @@ -253303,7 +254009,7 @@ - UBERON:0010758 + HAO:0000145 uberon UBERON:0003207 @@ -257346,8 +258052,8 @@ - EHDAA:2851 - EMAPA:17263 + + uberon UBERON:0003266 obsoleted pending formal definition of nerve, with explicit reference to PNS vs CNS. See https://github.com/obophenotype/mouse-anatomy-ontology/issues/6 @@ -257625,7 +258331,7 @@ - UBERON:0000378 + uberon UBERON:0003273 Merged as it was equivalent to parent - see https://github.com/obophenotype/uberon/issues/331 @@ -257710,7 +258416,7 @@ A skeletal system that is part of a embryo [Automatically generated definition]. - UBERON:0004288 + developmental tissue set of all bones developmental tissue set of bones of body developmental tissue skeletal system @@ -258531,7 +259237,7 @@ - UBERON:0002101 + uberon UBERON:0003285 obsolete limb of embryo @@ -262922,7 +263628,7 @@ - EMAPA:30901 + uberon UBERON:0003340 obsolete urethra of urogenital sinus @@ -265968,8 +266674,8 @@ - EMAPA:19107 - EMAPA:19144 + + uberon UBERON:0003385 obsolete skeletal muscle of mesenchyme @@ -266829,8 +267535,13 @@ uberon UBERON:0003404 lobar bronchus of right lung - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb @@ -266904,8 +267615,13 @@ uberon UBERON:0003405 lobar bronchus of left lung - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb @@ -266981,6 +267697,7 @@ uberon UBERON:0003406 cartilage of respiratory system + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.0/assets/VH_F_Lung.glb @@ -271621,7 +272338,7 @@ A bone that is part of a chondrocranium [Automatically generated definition]. - UBERON:0011164 + UBERON:0004762 ZFA:0001544 uberon @@ -273061,7 +273778,7 @@ this class was obsoleted as it was defined inconsistently - UBERON:0011827 + uberon UBERON:0003486 obsolete mammary gland sebaceous gland @@ -277434,7 +278151,7 @@ - MA:0002741 + uberon UBERON:0003545 obsoleted as definition is unclear. cerebellar peduncle originally classified here but in ABA brainstem and cerbellum are spatially disjoint @@ -282834,8 +283551,8 @@ trachea cartilage http://upload.wikimedia.org/wikipedia/commons/5/56/Gray952.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-trachea.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-trachea.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/trachea-female/v1.0/assets/3d-vh-f-trachea.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/trachea-male/v1.0/assets/3d-vh-m-trachea.glb @@ -292074,8 +292791,12 @@ fused sacrum http://upload.wikimedia.org/wikipedia/commons/e/ec/Gray95.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.0/assets/VH_F_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.1/assets/VH_F_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.2/assets/VH_F_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.0/assets/VH_M_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.1/assets/VH_M_Pelvis.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.2/assets/VH_M_Pelvis.glb @@ -294282,8 +295003,12 @@ splenic vein http://upload.wikimedia.org/wikipedia/commons/5/5b/Gray1189.png http://upload.wikimedia.org/wikipedia/commons/e/e4/Bilebladder.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb @@ -294461,6 +295186,7 @@ The major nerves supplying sympathetic innervation to the abdomen, including the greater, lesser, and lowest (or smallest) splanchnic nerves that are formed by preganglionic fibers from the spinal cord which pass through the paravertebral ganglia and then to the celiac ganglia and plexuses and the lumbar splanchnic nerves carry fibers which pass through the lumbar paravertebral ganglia to the mesenteric and hypogastric ganglia. + All carry sympathetic fibers except for the pelvic splanchnic nerves, which carry parasympathetic fibers BAMS:spn EMAPA:37959 @@ -294473,6 +295199,7 @@ splanchnic nerves visceral nerve UBERON:0003715 + splanchnic nerve @@ -294522,6 +295249,7 @@ A branch of the vagus nerve that supplies motor function and sensation to the larynx (voice box). It travels within the endoneurium. It is the nerve of the 6th Branchial Arch. + Branch of the vagus nerve that separates from the vagus well postcranially, then continues anteriorly to innervate the larynx[AAO:0010754]. recurrent nerve AAO:0010754 @@ -294538,6 +295266,7 @@ inferior laryngeal nerve ramus recurrens UBERON:0003716 + recurrent laryngeal nerve @@ -294904,6 +295633,7 @@ The lingual nerve is a branch of the mandibular nerve (CN V3), itself a branch of the trigeminal nerve, which supplies sensory innervation to the tongue. It also carries fibers from the facial nerve, which return taste information from the anterior two thirds of the tongue. + BAMS:5lg EMAPA:19168 FMA:53218 @@ -294917,6 +295647,7 @@ trigeminal nerve lingual branch uberon UBERON:0003721 + lingual nerve @@ -295274,6 +296005,7 @@ The twelve spinal nerves on each side of the thorax. They include eleven INTERCOSTAL NERVES and one subcostal nerve. Both sensory and motor, they supply the muscles and skin of the thoracic and abdominal walls. + FMA:5860 GAID:857 MESH:D013900 @@ -295286,6 +296018,7 @@ nervi thoracici pectoral nerve UBERON:0003726 + thoracic nerve @@ -301668,10 +302401,10 @@ Any muscle organ that is part of a body wall [Automatically generated definition]. - ANISEED:1235296 - BTO:0001863 - UBERON:0004462 - WBbt:0005813 + + + + uberon wall muscle UBERON:0003896 @@ -303547,7 +304280,7 @@ This term was obsoleted as it was previously defined midleadingly as 'A macula that is part of a cochlea'. - ZFA:0000116 + uberon UBERON:0003927 obsolete macula lagena @@ -306613,8 +307346,12 @@ UBERON:0003978 valve - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb @@ -309785,7 +310522,7 @@ chorionic plate - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Placenta.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/placenta-full-term-female/v1.0/assets/VH_F_Placenta.glb @@ -313410,8 +314147,12 @@ vena cava http://upload.wikimedia.org/wikipedia/commons/3/35/Relations_of_the_aorta,_trachea,_esophagus_and_other_heart_structures.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb https://upload.wikimedia.org/wikipedia/commons/7/7c/Heart_numlabels.png @@ -316753,8 +317494,12 @@ UBERON:0004148 cardiac vein - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb @@ -317870,7 +318615,7 @@ Joint in the leg. For example the knee, which separates the leg tibia and femur. - UBERON:0003657 + joint of leg uberon joint of lower limb @@ -319568,10 +320313,18 @@ kidney pyramid - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.2/assets/VH_F_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.2/assets/VH_F_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png @@ -322168,8 +322921,10 @@ uberon UBERON:0004230 urinary bladder neck smooth muscle - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Urinary_Bladder.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Urinary_Bladder.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.0/assets/VH_F_Urinary_Bladder.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.1/assets/VH_F_Urinary_Bladder.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.0/assets/VH_M_Urinary_Bladder.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.1/assets/VH_M_Urinary_Bladder.glb @@ -327679,6 +328434,7 @@ A nerve that is part of a parasympathetic nervous system [Automatically generated definition]. + EHDAA2:0001401 EMAPA:17271 MA:0000224 @@ -327687,6 +328443,7 @@ nerve of parasympathetic nervous system uberon UBERON:0004293 + parasympathetic nerve @@ -332659,7 +333416,7 @@ - GO:0098846 + uberon UBERON:0004355 @@ -339077,7 +339834,7 @@ - UBERON:0000042 + This class was originally created to mirror the MA class of the same name; in MA this groups pericardium, pleura and periotoneal cavity lining and is better represented using concepts like serous membrane uberon UBERON:0004457 @@ -339097,7 +339854,7 @@ Either a cavity lining or the space it encloses. - UBERON:0005906 + uberon UBERON:0004458 obsolete body cavity or lining @@ -339907,8 +340664,8 @@ - FMA:74779 - UBERON:0004464 + + musculature of chest uberon chest musculature @@ -340209,7 +340966,7 @@ - FMA:71289 + muscle group of tongue muscles of tongue musculi linguae @@ -340592,7 +341349,7 @@ - FMA:33062 + iliocostalis muscle group iliocostalis muscles set set of iliocostalis muscles @@ -340625,7 +341382,7 @@ - FMA:22596 + uberon UBERON:0004484 obsolete splenius musculature @@ -342844,7 +343601,7 @@ - BSPO:0000000 + uberon UBERON:0004531 obsolete left side of organism @@ -342856,7 +343613,7 @@ - BSPO:0000007 + uberon UBERON:0004532 obsolete right side of organism @@ -343150,8 +343907,8 @@ lymph vasculature - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.2/assets/NIH_F_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.2/assets/NIH_M_Lymph_Node.glb @@ -343232,8 +343989,9 @@ UBERON:0004537 blood vasculature - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb @@ -343283,9 +344041,12 @@ UBERON:0004538 left kidney - https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Kidney_Left.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.2/assets/VH_F_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb @@ -343335,9 +344096,12 @@ UBERON:0004539 right kidney - https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Kidney_Right.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.2/assets/VH_F_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb @@ -343714,8 +344478,12 @@ UBERON:0004548 left eye - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-l.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-l.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.0/assets/VH_F_Eye_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.1/assets/VH_F_Eye_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.2/assets/3d-vh-f-eye-l.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.0/assets/VH_M_Eye_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.1/assets/VH_M_Eye_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.2/assets/3d-vh-m-eye-l.glb @@ -343786,8 +344554,10 @@ UBERON:0004549 right eye - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-r.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-r.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.1/assets/VH_F_Eye_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.2/assets/3d-vh-f-eye-r.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.1/assets/VH_M_Eye_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.2/assets/3d-vh-m-eye-r.glb @@ -344013,7 +344783,7 @@ this class was made obsolete, as uberon does not include 'Set of X' classes. For now, the FMA class for set of plantar digital arteries proper is under UBERON:0004540, but it is unclear if this is correct - FMA:71564 + arteriae digitales plantares propriae plantar digital arteries proper plantar digital arteries proper set @@ -349628,8 +350398,12 @@ UBERON:0004671 gyrus rectus - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -349869,6 +350643,7 @@ DHBA:12865 DMBA:17739 FMA:52610 + HBA:9322 SCTID:280185007 TAO:0000192 ZFA:0000192 @@ -350083,6 +350858,7 @@ DHBA:12886 DMBA:17750 FMA:72632 + HBA:9343 UMLS:C0175555 neuronames:798 central part of hypoglossal nerve @@ -351197,8 +351973,8 @@ The term 'middle temporal visual area' was first used by Allman and Kaas (1971) for a region of the owl monkey brain located on the 'caudal third of the middle temporal gyrus.' Functionally, it contains 'a complete representation of the contralateral half of the visual field... This representation of the visual field (MT) corresponds to a histologically distinct area adjacent and rostral to area 19... The horizontal meridian divides MT into a lateral portion representing the upper visual quadrant and a medial portion representing the lower quadrant. The center of gaze is represented in the caudal portion of MT bordering area 19.'. - UBERON:0013552 - NLXANAT:20090308 + + middle temporal area uberon UBERON:0004685 @@ -353816,8 +354592,12 @@ cerebellar vermis http://upload.wikimedia.org/wikipedia/commons/4/43/CerebellumDiv.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -354243,8 +355023,14 @@ piriform cortex http://upload.wikimedia.org/wikipedia/commons/b/b1/Human_brainstem_anterior_view_2_description.JPG - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.0/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.0/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -356486,8 +357272,8 @@ Sliver of bone that invest part of or all the posterior aspect of each antorbital plane.[AAO] The cartilaginous autopalatine forms from the anterior palatoquadrate arch. The first sign of ossification is visible at the anterior tip where it articulates with the maxilla (7.6 mm). In adults there are three processes at the anterior portion of the palatine: a ventromedial process, which forms the socket of the small ball- and- socket joint with the preethmoid; a dorsomedial process, which is connected by a short ligament to the ethmoid; and a lateral process, which extends toward the first infraorbital. Possession of a dorsomedial process, which abuts the ethmoid, is a unique feature shared by Cypriniformes (Fink and Fink, 1981). The palatine has two components, the autopalatine (derived from pars autopalatine) and the dermal component having teeth, the dermopalatine Arratia & Schultze 1990. The element in cypriniforms is only the cartilage part, so that it is more correct to name it autopalatine and not as palatine in general that it implies a fusion of elements (as in perciforms).[ZFA] - AAO:0000372 - ZFA:0000620 + + uberon UBERON:0004748 obsolete autopalatine @@ -364239,7 +365025,7 @@ - UBERON:0003053 + uberon UBERON:0004860 obsolete brain ventricular zone @@ -365986,8 +366772,13 @@ uberon UBERON:0004887 left lung hilus - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb @@ -366070,8 +366861,13 @@ uberon UBERON:0004888 right lung hilus - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb @@ -367434,7 +368230,8 @@ UBERON:0004914 duodenal papilla http://upload.wikimedia.org/wikipedia/commons/4/43/Gray1057.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Small_Intestine.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.0/assets/VH_M_Small_Intestine.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.1/assets/VH_M_Small_Intestine.glb @@ -380920,7 +381717,7 @@ - FBbt:00001668 + uberon UBERON:0005059 obsolete Drosophila lymph gland @@ -381469,7 +382266,7 @@ - UBERON:0011930 + uberon UBERON:0005073 obsolete preganglionic parasympathetic nervous system @@ -381481,7 +382278,7 @@ - UBERON:0011929 + uberon UBERON:0005074 obsolete postganglionic parasympathetic nervous system @@ -382705,8 +383502,10 @@ The short descending thin limb is the descending thin limb of a short nephron that has a squamous epithelial morphology[GO]. TODO - epithelium types + uberon UBERON:0005099 + short descending thin limb @@ -385812,7 +386611,7 @@ - MA:0000747 + uberon UBERON:0005180 obsolete lymph organ @@ -386027,7 +386826,7 @@ - UBERON:0004358 + uberon UBERON:0005188 obsolete caput epididymis @@ -386039,7 +386838,7 @@ - UBERON:0004359 + uberon UBERON:0005189 obsolete corpus epididymis @@ -386051,7 +386850,7 @@ - UBERON:0004360 + uberon UBERON:0005190 obsolete cauda epididymis @@ -386585,7 +387384,7 @@ - MA:0001937 + http://www.informatics.jax.org/cookbook/figures/figure97.shtml uberon UBERON:0005201 @@ -387394,7 +388193,7 @@ https://github.com/obophenotype/uberon/issues/3156 - UBERON:0005234 + uberon UBERON:0005216 Obsoleted because it is redundant with 'optic eminence ectoderm'. @@ -388409,7 +389208,7 @@ A forelimb that is part of an apical ectodermal ridge [Automatically generated definition]. - VHOG:0001064 + uberon UBERON:0005241 obsolete apical ectodermal ridge forelimb @@ -388428,7 +389227,7 @@ A hindlimb that is part of an apical ectodermal ridge [Automatically generated definition]. - VHOG:0001066 + uberon UBERON:0005242 obsolete apical ectodermal ridge hindlimb @@ -389540,7 +390339,7 @@ - VHOG:0000793 + uberon UBERON:0005264 obsolete midbrain neural fold @@ -389552,7 +390351,7 @@ - VHOG:0001211 + uberon UBERON:0005265 obsolete hindbrain neural fold @@ -389564,7 +390363,7 @@ - VHOG:0000628 + uberon UBERON:0005266 obsolete spinal cord neural fold @@ -390196,7 +390995,7 @@ - UBERON:0006904 + uberon cranial mesoderm UBERON:0005280 @@ -391369,7 +392168,7 @@ - UBERON:0003937 + uberon UBERON:0005300 obsolete reproductive gland @@ -391563,6 +392362,7 @@ The transition between the superior hypogastric plexus and the inferior hypogastric plexus. check plexus vs nerve. WP indicates it is a 'transition' + EMAPA:18225 FMA:77596 MA:0001140 @@ -391576,6 +392376,7 @@ uberon nervus hypogastricus UBERON:0005303 + hypogastric nerve http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray847.png @@ -395523,6 +396324,7 @@ The upper ganglion of the vagus nerve located at the jugular foramen. + superior vagus X EMAPA:17156 FMA:6229 @@ -395543,6 +396345,7 @@ jugular ganglion vagus X superior ganglion UBERON:0005364 + superior vagus X ganglion @@ -401201,8 +402004,8 @@ - FMA:65553 - SCTID:429921001 + + autonomic division of peripheral nervous system autonomic part of peripheral nervous system divisio autonomica systematis nervosi peripherici @@ -401438,8 +402241,10 @@ common hepatic artery http://upload.wikimedia.org/wikipedia/commons/6/65/Gray532.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb @@ -401553,8 +402358,12 @@ coronary sinus http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray491.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb @@ -402254,8 +403063,8 @@ - EHDAA2:0000541 - FMA:18650 + + polocytus primarius uberon UBERON:0005444 @@ -402456,8 +403265,8 @@ - UBERON:0006081 - UBERON:0006082 + + uberon UBERON:0005447 obsolete bladder fundus @@ -403407,8 +404216,12 @@ uberon UBERON:0005457 left thymus lobe - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Thymus.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Thymus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.0/assets/VH_F_Thymus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.1/assets/VH_F_Thymus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.2/assets/VH_F_Thymus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.0/assets/VH_M_Thymus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.1/assets/VH_M_Thymus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.2/assets/VH_M_Thymus.glb @@ -404280,8 +405093,12 @@ uberon UBERON:0005469 right thymus lobe - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Thymus.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Thymus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.0/assets/VH_F_Thymus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.1/assets/VH_F_Thymus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.2/assets/VH_F_Thymus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.0/assets/VH_M_Thymus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.1/assets/VH_M_Thymus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.2/assets/VH_M_Thymus.glb @@ -404534,8 +405351,8 @@ - EHDAA2:0001820 - FMA:18651 + + polocytus secundarius uberon UBERON:0005474 @@ -404636,6 +405453,7 @@ Trunk part of spinal nerve, where dorsal and ventral roots meet to form the spinal nerve, before branching off to dorsal and ventral rami. + EHDAA2:0001900 FMA:5929 spinal nerve (trunk) @@ -404643,6 +405461,7 @@ trunk of spinal nerve uberon UBERON:0005476 + spinal nerve trunk @@ -404976,8 +405795,8 @@ - FMA:20358 - SCTID:425803006 + + subdivision of thorax thoracic region thoracic subdivision @@ -405523,6 +406342,7 @@ The superior mesenteric plexus is a continuation of the lower part of the celiac plexus, receiving a branch from the junction of the right vagus nerve with the plexus. It surrounds the superior mesenteric artery, accompanies it into the mesentery, and divides into a number of secondary plexuses, which are distributed to all the parts supplied by the artery, viz. , pancreatic branches to the pancreas; intestinal branches to the small intestine; and ileocolic, right colic, and middle colic branches, which supply the corresponding parts of the great intestine. The nerves composing this plexus are white in color and firm in texture; in the upper part of the plexus close to the origin of the superior mesenteric artery is the superior mesenteric ganglion. + FMA:6639 SCTID:362493003 Wikipedia:Superior_mesenteric_plexus @@ -405530,6 +406350,7 @@ superior mesenteric nerve plexus uberon UBERON:0005488 + superior mesenteric plexus http://upload.wikimedia.org/wikipedia/commons/6/63/Gray848.png @@ -410649,12 +411470,12 @@ Curated as it is indistinguishable from parent; See https://github.com/obophenotype/uberon/issues/1305 - EHDAA2:0001344 - EMAPA:16671 - EMAPA:16996 - EMAPA:16999 - UBERON:0003051 - VHOG:0000986 + + + + + + uberon UBERON:0005641 obsolete otocyst epithelium @@ -412535,7 +413356,7 @@ - EHDAA2:0001984 + uberon UBERON:0005683 obsolete telencephalon lateral ventricle @@ -413720,9 +414541,9 @@ - UBERON:0001714 - EHDAA2:0000226 - EHDAA:920 + + + uberon UBERON:0005706 obsolete central nervous system cranial ganglion @@ -414034,9 +414855,9 @@ - EHDAA:4739 - RETIRED_EHDAA2:0000985 - UBERON:0001804 + + + uberon UBERON:0005714 obsolete lens vesicle capsule @@ -414584,7 +415405,7 @@ Obsoleted definition: In the developing vertebrate embryo, the somitomeres are loose masses of paraxial mesoderm derived cells that form along each side of the neural tube towards the end of the third gestational week. The approximately 50 pairs of somitomeres begin developing in the cranial (head) region, continuing in a caudal (tail) direction until the end of week four[WP]. - UBERON:0009617 + FMA:85523 Wikipedia:Somitomere uberon @@ -415125,9 +415946,9 @@ - EMAPA:29925 - EMAPA:29933 - UBERON:0001297 + + + uberon UBERON:0005741 obsolete adventitia of uterus @@ -420635,7 +421456,7 @@ - AAO:0010327 + uberon UBERON:0005889 obsolete zygote cortex @@ -420860,7 +421681,7 @@ OBSOLETE: A leg is a limb on which an animal walks and stands (GO:0035110). this class was originally introduced to support GO:0035110, but this has been obsoleted, because leg is a mechano-functional grouping - UBERON:0000026 + uberon leg UBERON:0005894 @@ -420931,8 +421752,8 @@ A jointed or prehensible appendage used for locomotion or manipulation. Examples: human arm, human leg, octopus tentacle, insect limb[Wikipedia]. A limb is an appendage of an animal used for locomotion or grasping. For example a leg, arm or some types of fin[GO]. this class was originally introduced to account for the previously vague use of the term 'limb' in GO. - AEO:0000172 - ncithesaurus:Extremities + + uberon extremitaet extremities @@ -421483,7 +422304,7 @@ See urothelium. was merged with urothelium. MA uses the label 'urothelium' exclusively. FMA uses 'transitional epithelium' and has 'urothelium' as a sibling. FMA also lists 'urothelium' as the only example of 'transitional epithelium'. MP treats them differently - UBERON:0000365 + uberon UBERON:0005910 obsolete transitional epithelium @@ -423178,10 +423999,18 @@ eye trabecular meshwork http://upload.wikimedia.org/wikipedia/commons/2/22/Gray870.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-l.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-r.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-l.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-r.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.0/assets/VH_F_Eye_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.1/assets/VH_F_Eye_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.2/assets/3d-vh-f-eye-l.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.0/assets/VH_F_Eye_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.1/assets/VH_F_Eye_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.2/assets/3d-vh-f-eye-r.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.0/assets/VH_M_Eye_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.1/assets/VH_M_Eye_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.2/assets/3d-vh-m-eye-l.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.0/assets/VH_M_Eye_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.1/assets/VH_M_Eye_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.2/assets/3d-vh-m-eye-r.glb @@ -428753,7 +429582,7 @@ - FMA:258174 + uberon UBERON:0006080 obsolete segment of white matter of spinal cord @@ -428872,8 +429701,10 @@ fundus of urinary bladder - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Urinary_Bladder.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Urinary_Bladder.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.0/assets/VH_F_Urinary_Bladder.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.1/assets/VH_F_Urinary_Bladder.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.0/assets/VH_M_Urinary_Bladder.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.1/assets/VH_M_Urinary_Bladder.glb @@ -429721,8 +430552,12 @@ UBERON:0006092 cuneus cortex - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -429818,8 +430653,12 @@ UBERON:0006093 precuneus cortex - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -431118,8 +431957,8 @@ - BIRNLEX:2522 - FMA:75640 + + basis modioli cochleae uberon UBERON:0006105 @@ -432270,8 +433109,8 @@ - FMA:66581 - NLXANAT:20090301 + + uberon A8 UBERON:0006122 @@ -434140,7 +434979,7 @@ - MA:0002260 + uberon UBERON:0006202 Was obsoleted as it grouped a lip structure with an unknown MA vein, which be a genital vein @@ -438383,10 +439222,10 @@ - EHDAA:8701 - EMAPA:18422 - FMA:71904 - RETIRED_EHDAA2:0001492 + + + + uberon UBERON:0006281 was obsoleted as it had no definition and the name was unclear. May refer to part of inferior vena cava or pre-hepatic portal vein FMA:71904 @@ -439737,7 +440576,7 @@ https://github.com/obophenotype/uberon/issues/3157 - UBERON:0006309 + uberon UBERON:0006310 Obsoleted as it is redundant with 'venous vitelline plexus'. @@ -441172,8 +442011,8 @@ - XAO:0003003 - ZFA:0001093 + + uberon UBERON:0006336 obsolete unspecified @@ -443081,8 +443920,8 @@ L5 segment of lumbar spinal cord - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb @@ -443135,8 +443974,8 @@ L1 segment of lumbar spinal cord - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb @@ -443189,8 +444028,8 @@ L3 segment of lumbar spinal cord - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb @@ -443243,8 +444082,8 @@ L2 segment of lumbar spinal cord - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb @@ -443297,8 +444136,8 @@ L4 segment of lumbar spinal cord - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb @@ -443352,8 +444191,8 @@ T4 segment of thoracic spinal cord - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb @@ -443406,8 +444245,8 @@ T5 segment of thoracic spinal cord - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb @@ -443460,8 +444299,8 @@ T6 segment of thoracic spinal cord - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb @@ -443514,8 +444353,8 @@ T7 segment of thoracic spinal cord - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb @@ -443568,8 +444407,8 @@ T8 segment of thoracic spinal cord - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb @@ -443622,8 +444461,8 @@ T1 segment of thoracic spinal cord - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb @@ -443676,8 +444515,8 @@ T2 segment of thoracic spinal cord - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb @@ -443730,8 +444569,8 @@ T3 segment of thoracic spinal cord - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb @@ -443784,8 +444623,8 @@ S1 segment of sacral spinal cord - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb @@ -443838,8 +444677,8 @@ S2 segment of sacral spinal cord - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb @@ -443892,8 +444731,8 @@ S3 segment of sacral spinal cord - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb @@ -443946,8 +444785,8 @@ S4 segment of sacral spinal cord - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb @@ -444000,7 +444839,7 @@ S5 segment of sacral spinal cord - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb @@ -444053,8 +444892,8 @@ T9 segment of thoracic spinal cord - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb @@ -444107,8 +444946,8 @@ T10 segment of thoracic spinal cord - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb @@ -444161,8 +445000,8 @@ T11 segment of thoracic spinal cord - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb @@ -444215,8 +445054,8 @@ T12 segment of thoracic spinal cord - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb @@ -444270,8 +445109,8 @@ C1 segment of cervical spinal cord - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb @@ -444325,8 +445164,8 @@ C8 segment of cervical spinal cord - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb @@ -446307,8 +447146,8 @@ C3 segment of cervical spinal cord - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb @@ -446362,8 +447201,8 @@ C2 segment of cervical spinal cord - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb @@ -446417,8 +447256,8 @@ C4 segment of cervical spinal cord - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb @@ -446472,8 +447311,8 @@ C5 segment of cervical spinal cord - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb @@ -446527,8 +447366,8 @@ C6 segment of cervical spinal cord - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb @@ -446582,8 +447421,8 @@ C7 segment of cervical spinal cord - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb @@ -447312,6 +448151,14 @@ UBERON:0006517 kidney calyx + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb @@ -449323,8 +450170,10 @@ UBERON:0006587 ligamentum venosum http://upload.wikimedia.org/wikipedia/commons/a/a3/Gray1087-liver.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb @@ -449393,8 +450242,10 @@ uberon UBERON:0006588 round ligament of liver - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb @@ -454862,8 +455713,8 @@ carina of trachea http://upload.wikimedia.org/wikipedia/commons/f/f2/Diagrama_de_los_pulmones-c.svg - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-trachea.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-trachea.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/trachea-female/v1.0/assets/3d-vh-f-trachea.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/trachea-male/v1.0/assets/3d-vh-m-trachea.glb @@ -455268,8 +456119,11 @@ UBERON:0006687 median sacral vein - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb @@ -457583,8 +458437,10 @@ left lobe of liver (classical) UBERON:0006727 liver left lateral lobe - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb @@ -457645,8 +458501,10 @@ uberon UBERON:0006728 liver left medial lobe - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb @@ -460966,8 +461824,8 @@ - AAO:0000571 - FMA:37374 + + specialized connective tissue uberon UBERON:0006809 @@ -461826,8 +462684,8 @@ A tube that connects ovary to the uterus. to be ceded to ARTHRO - FBbt:00004911 - TADS:0000415 + + uberon UBERON:0006835 obsolete arthropod oviduct @@ -462005,6 +462863,7 @@ Branch of spinal nerve that innervates the hypaxial muscles. + ramus anterior ventral ramus FMA:5982 @@ -462016,6 +462875,7 @@ anterior branch of spinal nerve ramus anterior nervi spinalis UBERON:0006838 + ventral ramus of spinal nerve https://upload.wikimedia.org/wikipedia/commons/d/d2/Spinal_nerve.svg @@ -462104,6 +462964,7 @@ Branch of spinal nerve that innervates the epaxial muscles. + dorsal ramus ramus posterior FMA:5983 @@ -462114,6 +462975,7 @@ uberon posterior branch of spinal nerve UBERON:0006839 + dorsal ramus of spinal nerve http://upload.wikimedia.org/wikipedia/commons/b/b1/Gray819.png @@ -462419,6 +463281,7 @@ The initial segment of a cranial nerve, leaving the central nervous system. recommend asserting under this class rather than relying on inference, as relations may change FMA:52609 + HBA:9299 SCTID:280161004 TAO:0002190 ZFA:0001663 @@ -462974,7 +463837,7 @@ - UBERON:0005751 + uberon UBERON:0006852 Manually merged with UBERON:0005751. UBERON:0005751 was formerly labeled as 'visceral layer of glomerular capsule'. https://github.com/obophenotype/uberon/issues/2230 @@ -466174,7 +467037,6 @@ UBERON:0006947 male genital duct - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb @@ -466785,8 +467647,12 @@ great vein of heart http://upload.wikimedia.org/wikipedia/commons/5/57/Gray556.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb @@ -467687,12 +468553,12 @@ A type of cell produced by division of the egg after fertilization. - CL:0000353 - BILA:0000052 - FMA:72551 - VHOG:0001221 - XAO:0003016 - ZFA:0000093 + + + + + + Wikipedia:Blastomere uberon UBERON:0007006 @@ -468070,8 +468936,8 @@ - BILA:0000132 - UBERON:0001135 + + uberon UBERON:0007094 obsolete as it was not clear whether the class was intended in the insect or vertebrate sense of the term. For vertebrates consider the term smooth muscle [https://github.com/obophenotype/insect_neuroanatomy_ontology/issues/8] @@ -473179,6 +474045,8 @@ tracheobronchial tree + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb @@ -474286,7 +475154,7 @@ - UBERON:0019250 + uberon UBERON:0007234 obsolete 4-8 cell stage @@ -481267,7 +482135,7 @@ OBSOLETE: A domain of columnar epithelium in an embryo that represents the early stage of the development of the epithelial component of a new anatomical structure. consider merging with ectodermal placode? In EHDAA2 this includes lens, nasal, otic epibranchial and trigeminal placodes - UBERON:0005085 + AEO_RETIRED:0000112 EHDAA2_RETIRED:0003112 uberon @@ -481671,8 +482539,8 @@ - AEO:0000173 - EHDAA2:0003173 + + uberon UBERON:0007540 obsoleted due to incorrect logical definition. A new class with the same name may be created in the future. @@ -494759,7 +495627,7 @@ A cnida that is harpoon-like in structure and is capable of penetrating prey. - BTO:0000918 + penetrant cnida uberon UBERON:0008278 @@ -500712,6 +501580,8 @@ vocalis muscle http://upload.wikimedia.org/wikipedia/commons/6/64/Musculusthyreoarytenoideus.png + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb @@ -503255,10 +504125,18 @@ uberon UBERON:0008716 hilum of kidney - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.2/assets/VH_F_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.2/assets/VH_F_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb @@ -505256,6 +506134,7 @@ A branch of that maxillary nerve that innervates the mucous membrane of the hard palate. + BAMS:npal FMA:52797 Wikipedia:Nasopalatine_nerve @@ -505266,6 +506145,7 @@ nasopalatine nerves nervus nasopalatinus UBERON:0008810 + nasopalatine nerve http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray858.png @@ -509290,8 +510170,12 @@ uberon UBERON:0008884 left putamen - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -509329,8 +510213,12 @@ uberon UBERON:0008885 right putamen - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -510828,7 +511716,7 @@ - UBERON:0010377 + uberon UBERON:0008919 obsolete mesenchyme from somatopleure @@ -510840,7 +511728,7 @@ - UBERON:0010378 + uberon UBERON:0008920 obsolete mesenchyme from splanchnopleure @@ -512232,8 +513120,13 @@ uberon UBERON:0008952 upper lobe of left lung - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb @@ -512335,8 +513228,13 @@ uberon UBERON:0008953 lower lobe of left lung - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb @@ -513515,8 +514413,8 @@ The olfactory region of the brain, located in the cerebrum. - BTO:0002785 - SCTID:361576004 + + uberon olfactory brain UBERON:0008981 @@ -514415,6 +515313,7 @@ A sensory branch of the glossopharyngeal nerve (CN IX) carrying signals from the baroceptors (blood pressure receptors) in the bifurcation of the carotid artery to the nucleus of the solitary tract (nucleus solitarius). + BTO:0004978 FMA:53488 SCTID:50624003 @@ -514427,6 +515326,7 @@ sinus nerve of Hering uberon UBERON:0009009 + carotid sinus nerve @@ -516730,7 +517630,7 @@ - UBERON:0009097 + uberon UBERON:0009096 Obsoleted as the gravid stage is not a life cycle stage. A similar term may be recreated when we have stages specific to structures such as the uterus @@ -517711,12 +518611,14 @@ Cranial ganglion which develops from an epibranchial placode. + BTO:0006250 TAO:0001555 ZFA:0001555 epibranchial ganglia uberon UBERON:0009127 + Epibranchial ganglia orchestrate the development of the cranial neurogenic crest epibranchial ganglion @@ -517955,8 +518857,8 @@ - EHDAA2:0001103 - SCTID:361481005 + + uberon UBERON:0009131 Obsoleted as the meaning of the class was unclear in earlier versions of EHDAA2 @@ -518332,7 +519234,7 @@ - UBERON:0001043 + oesophageal region oesophageal region uberon @@ -521823,7 +522725,7 @@ The bottommost bone in the equine leg and is encased by the hoof capsule. The distal phalanx articulates with both the middle phalanx and the distal sesamoid, forming the distal interphalangeal joint. - UBERON:0014485 + uberon UBERON:0009554 Was made obsolete in favor of the more generic grouping @@ -521921,7 +522823,7 @@ - UBERON:0009768 + uberon UBERON:0009557 obsolete coffin joint @@ -524650,6 +525552,7 @@ The paired bundles of nerve fibers entering and leaving the spinal cord at each segment. The dorsal and ventral nerve roots join to form the mixed segmental spinal nerves. The dorsal roots are generally afferent, formed by the central projections of the spinal (dorsal root) ganglia sensory cells, and the ventral roots efferent, comprising the axons of spinal motor and autonomic preganglionic neurons. There are, however, some exceptions to this afferent/efferent rule. + ZFA has part_of to spinal cord but this causes spatial disjointness violations (CNS/PNS) BTO:0000883 DHBA:146035120 @@ -524664,6 +525567,7 @@ spinal root uberon UBERON:0009623 + spinal nerve root https://github.com/obophenotype/uberon/issues/2644 @@ -524734,6 +525638,7 @@ The lumbar nerves are the five spinal nerves emerging from the lumbar vertebrae. They are divided into posterior and anterior divisions. + FMA:5861 NCIT:C33015 SCTID:361600002 @@ -524745,6 +525650,7 @@ uberon nervi lumbales UBERON:0009624 + lumbar nerve http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray802.png @@ -524806,6 +525712,7 @@ The five sacral nerves emerge from the sacrum. Although the vertebral components of the sacrum are fused into a single bone, the sacral vertebrae are still used to number the sacral nerves. Posteriorly, they emerge from the posterior sacral foramina, and form the posterior branches of sacral nerves. Anteriorly, they emerge from the anterior sacral foramina, and contribute to the sacral plexus (S1-S4) and coccygeal plexus. + FMA:5862 NCIT:C33505 SCTID:361601003 @@ -524817,6 +525724,7 @@ uberon nervi sacrales UBERON:0009625 + sacral nerve http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray802.png @@ -526301,7 +527209,7 @@ - MA:0001960 + uberon UBERON:0009656 insufficiently defined @@ -526435,7 +527343,7 @@ - UBERON:0001146 + uberon UBERON:0009660 obsolete adrenal vein @@ -526986,6 +527894,7 @@ The chorda tympani is a nerve that branches from the facial nerve (cranial nerve VII) inside the facial canal, just before the facial nerve exits the skull via the stylomastoid foramen. Chorda tympani is a branch of the facial nerve (the seventh cranial nerve) that serves the taste buds in the front of the tongue, runs through the middle ear, and carries taste messages to the brain. The chorda tympani is part of one of three cranial nerves that are involved in taste. The taste system involves a complicated feedback loop, with each nerve acting to inhibit the signals of other nerves. The chorda tympani appears to exert a particularly strong inhibitory influence on other taste nerves, as well as on pain fibers in the tongue. When the chorda tympani is damaged, its inhibitory function is disrupted, leading to less inhibited activity in the other nerves. + EHDAA2:0000490 EHDAA:3719 EMAPA:18217 @@ -527005,6 +527914,7 @@ nervus corda tympani tympanic cord UBERON:0009675 + chorda tympani branch of facial nerve @@ -527349,8 +528259,12 @@ UBERON:0009687 middle cardiac vein - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb @@ -528725,7 +529639,7 @@ - XAO:1000007 + uberon UBERON:0009741 Was made obsolete as it was xenopus specific @@ -531098,7 +532012,8 @@ body of uterus - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Uterus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.0/assets/VH_F_Uterus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.1/assets/VH_F_Uterus.glb @@ -544878,8 +545793,12 @@ uberon UBERON:0010223 left pupil - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-l.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-l.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.0/assets/VH_F_Eye_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.1/assets/VH_F_Eye_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.2/assets/3d-vh-f-eye-l.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.0/assets/VH_M_Eye_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.1/assets/VH_M_Eye_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.2/assets/3d-vh-m-eye-l.glb @@ -544924,8 +545843,12 @@ uberon UBERON:0010224 right pupil - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-r.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-r.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.0/assets/VH_F_Eye_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.1/assets/VH_F_Eye_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.2/assets/3d-vh-f-eye-r.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.0/assets/VH_M_Eye_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.1/assets/VH_M_Eye_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.2/assets/3d-vh-m-eye-r.glb @@ -546953,7 +547876,7 @@ Embryoid bodies are structures resembling embryos, occurring in several types of germ cell tumors. - BTO:0001718 + Wikipedia:Embryoid_body uberon UBERON:0010263 @@ -547788,7 +548711,7 @@ - UBERON:0001896 + uberon UBERON:0010288 obsolete future medulla oblongata @@ -549094,8 +550017,8 @@ - UBERON:0000923 - UBERON:0010313 + + uberon UBERON:0010317 Grouping term for query purposes @@ -549235,7 +550158,7 @@ - UBERON:0001456 + VSAO:0000083 uberon UBERON:0010324 @@ -549249,7 +550172,7 @@ Cranial skeleton derived from neural crest cells. - UBERON:0011156 + VSAO:0000082 Cranio-facial skeleton uberon @@ -551271,8 +552194,11 @@ uncinate process of pancreas http://upload.wikimedia.org/wikipedia/commons/f/fe/Illu_pancreas_duodenum.jpg - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pancreas.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pancreas.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.0/assets/VH_F_Pancreas.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.1/assets/VH_F_Pancreas.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.0/assets/VH_M_Pancreas.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.1/assets/VH_M_Pancreas.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.2/assets/3d-vh-m-pancreas.glb @@ -552334,8 +553260,14 @@ afferent lymphatic vessel - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-left/v1.0/assets/NIH_F_Lymph_Node_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-right/v1.0/assets/NIH_F_Lymph_Node_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.2/assets/NIH_F_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.2/assets/NIH_M_Lymph_Node.glb @@ -552373,8 +553305,14 @@ efferent lymphatic vessel - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-left/v1.0/assets/NIH_F_Lymph_Node_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-right/v1.0/assets/NIH_F_Lymph_Node_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.2/assets/NIH_F_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.2/assets/NIH_M_Lymph_Node.glb @@ -553444,8 +554382,14 @@ UBERON:0010417 lymph node T cell domain - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-left/v1.0/assets/NIH_F_Lymph_Node_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-right/v1.0/assets/NIH_F_Lymph_Node_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.2/assets/NIH_F_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.2/assets/NIH_M_Lymph_Node.glb @@ -554157,10 +555101,18 @@ UBERON:0010427 ciliary processes http://upload.wikimedia.org/wikipedia/commons/b/b2/Gray875.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-l.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-r.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-l.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-r.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.0/assets/VH_F_Eye_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.1/assets/VH_F_Eye_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.2/assets/3d-vh-f-eye-l.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.0/assets/VH_F_Eye_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.1/assets/VH_F_Eye_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.2/assets/3d-vh-f-eye-r.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.0/assets/VH_M_Eye_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.1/assets/VH_M_Eye_L.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.2/assets/3d-vh-m-eye-l.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.0/assets/VH_M_Eye_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.1/assets/VH_M_Eye_R.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.2/assets/3d-vh-m-eye-r.glb @@ -554572,9 +555524,9 @@ - NCIT:C12319 - UBERON:0006588 - UBERON:0006589 + + + uberon UBERON:0010504 obsolete round ligament @@ -562597,8 +563549,14 @@ uberon UBERON:0010748 lymph node follicle - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-left/v1.0/assets/NIH_F_Lymph_Node_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-right/v1.0/assets/NIH_F_Lymph_Node_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.2/assets/NIH_F_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.2/assets/NIH_M_Lymph_Node.glb @@ -565097,9 +566055,9 @@ A hair-like unicellular external process of the body wall or any derivative of the latter; a hair; a bristle. - BTO:0004212 - INSECT:0000114 - MIAA:0000152 + + + uberon bristle chaeta @@ -566458,6 +567416,8 @@ UBERON:0010927 thyroepiglotticus muscle http://upload.wikimedia.org/wikipedia/commons/6/64/Musculusthyreoarytenoideus.png + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb @@ -566814,6 +567774,8 @@ crico-arytenoid muscle https://github.com/obophenotype/uberon/issues/530 http://upload.wikimedia.org/wikipedia/commons/9/96/Gray959.png + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb @@ -568474,6 +569436,8 @@ UBERON:0010958 arytenoid muscle http://upload.wikimedia.org/wikipedia/commons/5/52/Musculusarytenoideus.png + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb @@ -571565,6 +572529,7 @@ The lacrimal nerve is the smallest of the three branches of the ophthalmic division of the trigeminal nerve. + FMA:52628 NCIT:C32908 SCTID:280218007 @@ -571572,6 +572537,7 @@ nervus lacrimalis uberon UBERON:0011096 + lacrimal nerve @@ -576308,8 +577274,9 @@ UBERON:0011191 ophthalmic vein http://upload.wikimedia.org/wikipedia/commons/0/02/Gray572.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb @@ -576433,6 +577400,7 @@ An autonomic plexus, entering the orbit in company with the ophthalmic artery, derived from the internal carotid plexus. + EMAPA:37704 FMA:312377 MA:0002185 @@ -576444,6 +577412,7 @@ plexus ophthalmicus uberon UBERON:0011194 + ophthalmic plexus @@ -576756,7 +577725,8 @@ UBERON:0011199 prostatic utricle http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray1153.png - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb @@ -577442,6 +578412,7 @@ DHBA:12888 DMBA:17748 FMA:6213 + HBA:9337 ZFA:0007011 rootlet of vagus nerve vagal root @@ -578974,7 +579945,7 @@ https://github.com/obophenotype/uberon/issues/3159 - UBERON:0004760 + uberon UBERON:0011253 Obsoleted as it seems to refer to the same concept as 'gland of anal canal'. @@ -582264,6 +583235,7 @@ The superior laryngeal nerve is a branch of the vagus nerve. It arises from the middle of the ganglion nodosum and in its course receives a branch from the superior cervical ganglion of the sympathetic. It descends, by the side of the pharynx, behind the internal carotid artery, and divides into two branches: external laryngeal nerve internal laryngeal nerve A superior laryngeal nerve palsy changes the pitch of the voice and causes an inability to make explosive sounds. If no recovery is evident three months after the palsy initially presents, the damage is most likely to be permanent. A bilateral palsy presents as a tiring and hoarse voice. + BAMS:sln FMA:6239 SCTID:279928006 @@ -582274,6 +583246,7 @@ superior laryngeal branch of vagus uberon UBERON:0011326 + superior laryngeal nerve @@ -586239,8 +587212,8 @@ - GO:0005578 - VSAO:0000021 + + uberon UBERON:0011586 obsoleted as it was already present in GO @@ -589940,7 +590913,7 @@ - UBERON:0011671 + uberon UBERON:0011668 obsolete nuchal plate of carapace @@ -591697,7 +592670,7 @@ Anatomical structure that is part of the larva. - AAO:0000265 + uberon UBERON:0011771 Obsolete term in XAO - XAO:0003058 @@ -593815,8 +594788,8 @@ uberon UBERON:0011828 areolar tubercle - https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-l.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-r.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-left/v1.0/assets/3d-vh-f-mammary-gland-l.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-right/v1.0/assets/3d-vh-f-mammary-gland-r.glb @@ -596669,6 +597642,7 @@ Nerve fibers which project from cell bodies of autonomic ganglia to synapses on target organs. + FMA:5924 MESH:D001338 NCIT:C12648 @@ -596678,6 +597652,7 @@ uberon postganglionic autonomic fibre UBERON:0011924 + postganglionic autonomic fiber @@ -596740,6 +597715,7 @@ Nerve fibers which project from the central nervous system to autonomic ganglia. In the sympathetic division most preganglionic fibers originate with neurons in the intermediolateral column of the spinal cord, exit via ventral roots from upper thoracic through lower lumbar segments, and project to the paravertebral ganglia; there they either terminate in synapses or continue through the splanchnic nerves to the prevertebral ganglia. In the parasympathetic division the fibers originate in neurons of the brain stem and sacral spinal cord. In both divisions the principal transmitter is acetylcholine but peptide cotransmitters may also be released. + FMA:5923 MESH:D001339 NCIT:C12624 @@ -596748,6 +597724,7 @@ uberon preganglionic autonomic fibre UBERON:0011925 + preganglionic autonomic fiber @@ -596798,6 +597775,7 @@ A noradrenergic or adrenergic axonal fiber projecting from a sympathetic ganglion to an effector organ. + MESH:D017779 NCIT:C12650 SCTID:323617002 @@ -596807,6 +597785,7 @@ postganglionic sympathetic fiber sympathetic postganglionic fiber UBERON:0011926 + postganglionic sympathetic fiber @@ -596921,6 +597900,7 @@ A cholinergic axonal fiber projecting from a parasympathetic ganglion to an effector organ. + MESH:D017777 NCIT:C12649 UMLS:C0206252 @@ -596928,6 +597908,7 @@ uberon parasympathetic postganglionic fiber UBERON:0011929 + postganglionic parasympathetic fiber @@ -600054,8 +601035,13 @@ uberon UBERON:0012065 lobar bronchus of left lung upper lobe - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb @@ -600121,8 +601107,13 @@ uberon UBERON:0012066 lobar bronchus of left lung lower lobe - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb @@ -603631,8 +604622,8 @@ - UBERON:0001926 - UBERON:0001927 + + EFO:0002463 SCTID:362376002 geniculate body @@ -603910,8 +604901,8 @@ https://sourceforge.net/tracker/?func=detail&aid=3580301&group_id=76834&atid=1205376 - MA:0001284 - NCIT:C33823 + + uberon UBERON:0012184 obsolete term deriving from MA to NCITA mappings. @@ -605901,7 +606892,7 @@ - UBERON:0013583 + uberon UBERON:0012263 obsolete equine cannon bone @@ -605913,7 +606904,7 @@ - UBERON:0003647 + uberon UBERON:0012264 obsolete equine forelimb cannon bone @@ -605925,7 +606916,7 @@ - UBERON:0003652 + uberon UBERON:0012265 obsolete equine hindlimb cannon bone @@ -613238,8 +614229,10 @@ uberon UBERON:0012472 hepatoduodenal ligament - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb @@ -616856,8 +617849,10 @@ ligamentum coronaria UBERON:0013138 coronary ligament of liver - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb @@ -630537,8 +631532,9 @@ UBERON:0013644 duodenal ampulla - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Small_Intestine.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Small_Intestine.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-female/v1.1/assets/VH_F_Small_Intestine.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.0/assets/VH_M_Small_Intestine.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.1/assets/VH_M_Small_Intestine.glb @@ -634948,7 +635944,8 @@ internal os UBERON:0013759 internal cervical os - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Uterus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.0/assets/VH_F_Uterus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.1/assets/VH_F_Uterus.glb @@ -635031,7 +636028,8 @@ ostium of uterus UBERON:0013760 external cervical os - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Uterus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.0/assets/VH_F_Uterus.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.1/assets/VH_F_Uterus.glb @@ -635612,7 +636610,7 @@ UBERON:0013772 left nipple - https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-l.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-left/v1.0/assets/3d-vh-f-mammary-gland-l.glb @@ -635652,7 +636650,7 @@ UBERON:0013773 right nipple - https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-r.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-right/v1.0/assets/3d-vh-f-mammary-gland-r.glb @@ -639206,9 +640204,9 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( Missing definition for term UBERON:0014457. Please replace it using linked reference. - FBbt:10005249 - UBERON:0003071 - XAO:0000227 + + + EFO:0000240 adult eye primordium early uberon @@ -645225,8 +646223,12 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014608 inferior occipital gyrus - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -645639,6 +646641,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( BIRNLEX:1580 DHBA:12883 DMBA:17749 + HBA:9340 SCTID:280187004 Wikipedia:Cranial_root_of_accessory_nerves neuronames:703 @@ -656241,7 +657244,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - UBERON:0004040 + uberon UBERON:0014934 obsolete cerebral cortex mantle layer @@ -657343,7 +658346,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - UBERON:0004637 + uberon UBERON:0015020 obsolete otic capsule endochondral element @@ -662016,6 +663019,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( uberon UBERON:0015134 main lactiferous duct + https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-left/v1.0/assets/3d-vh-f-mammary-gland-l.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-right/v1.0/assets/3d-vh-f-mammary-gland-r.glb @@ -668428,7 +669433,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - UBERON:0002275 + uberon UBERON:0015827 obsolete brainstem reticular formation @@ -670516,7 +671521,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( The term tonsillar node can be inaccurate or ambiguous. - SCTID:261419004 + tonsillar node uberon UBERON:0015919 @@ -671729,8 +672734,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - UBERON:0036013 - UBERON:0036014 + + uberon UBERON:0016411 obsolete intergluteal cleft @@ -672102,6 +673107,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( The palmar branch of the median nerve is a branch of the median nerve which arises at the lower part of the forearm and innervates skin of proximal central palm and thenar eminence. + does not pass through the carpal tunnel FMA:44836 Wikipedia:Palmar_branch_of_the_median_nerve @@ -672112,6 +673118,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( ramus palmaris nervus interossei antebrachii anterior uberon UBERON:0016430 + palmar branch of median nerve @@ -673265,8 +674272,10 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( liver capsule UBERON:0016479 capsule of liver - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb @@ -674297,6 +675306,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( + EMAPA:31527 FMA:80131 SCTID:324760006 @@ -674304,6 +675314,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( uberon pelvic ganglia UBERON:0016508 + pelvic ganglion @@ -676454,7 +677465,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - UBERON:0002181 + uberon UBERON:0016573 obsolete lamina II of gray matter of spinal cord @@ -677060,7 +678071,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - FMA:68872 + uberon UBERON:0016593 Rexed lamina system typically extends to X @@ -677073,7 +678084,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - FMA:68873 + uberon UBERON:0016594 Rexed lamina system typically extends to X @@ -678497,7 +679508,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( A cell group located ventral to the brachium conjunctivum in the general area where the medial and lateral parabrachial nuclei abut, shifting to the slightly more lateral position rostrally. - UBERON:0002869 + uberon UBERON:0016849 obsolete subparabrachial nucleus @@ -682903,6 +683914,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( Branch of spinal nerve that innervates the structures of the vertebral column. + FMA:5988 SCTID:308794007 Wikipedia:Meningeal_branches_of_spinal_nerve @@ -682912,6 +683924,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( uberon sinuvertebral nerve UBERON:0017641 + meningeal branch of spinal nerve @@ -682969,6 +683982,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( Rami communicans (plural rami communicantes) is the term used for a nerve which connects two other nerves. When used without further definition, it almost always refers to a communicating branch between a spinal nerve and the sympathetic trunk. More specifically, it usually refers to one of the following: Gray ramus communicans White ramus communicans. + rami communicantes FMA:5874 SCTID:310727003 @@ -682976,6 +683990,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( uberon rami communicantes of spinal nerve UBERON:0017642 + communicating branch of spinal nerve @@ -685089,8 +686104,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( lobus glandulae mammariae UBERON:0018140 mammary lobe - https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-l.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-r.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-left/v1.0/assets/3d-vh-f-mammary-gland-l.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-right/v1.0/assets/3d-vh-f-mammary-gland-r.glb @@ -687311,8 +688326,11 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0018252 internal pudendal vein - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb @@ -688187,7 +689205,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - UBERON:0016929 + uberon UBERON:0018280 obsolete lingual cusp of tooth @@ -688970,7 +689988,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( OBSOLETE expanded and swollen region of a surface that is otherwise relatively flat - UBERON:0010188 + uberon UBERON:0018306 @@ -689087,7 +690105,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( Rib attached to the cervical vertebrae. - UBERON:0018144 + uberon UBERON:0018311 obsolete cervical rib @@ -689544,7 +690562,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - UBERON:0017249 + uberon UBERON:0018327 obsolete incisive process of premaxilla @@ -690486,7 +691504,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( Opening for the supracoracoid nerve in the supracoracoid. - UBERON:3000778 + uberon UBERON:0018363 obsolete supracoracoid nerve foramen @@ -691043,7 +692061,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( OBSOLETE Any of a class (Cestoda) of bilaterally symmetrical flatworms parasitic especially in the intestines of vertebrates. - NCBITaxon:6199 + uberon tapeworm UBERON:0018387 @@ -691946,6 +692964,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( A nerve that is formed by the junction of the great petrosal nerve and the deep petrosal nerve and continues on to innervate the palate, nose and lacrimal gland. + FMA classifies as an anatomical junction FMA:67584 SCTID:280273005 @@ -691957,6 +692976,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( nerve of the pterygoid canal vidian nerve UBERON:0018412 + vidian nerve @@ -692417,8 +693437,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - FMA:77455 - SCTID:369268003 + + formatio reticularis spinalis reticular formation of spinal cord spinal reticular formation @@ -695684,7 +696704,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - UBERON:4200172 + uberon UBERON:0018669 obsolete neck of humerus @@ -695793,6 +696813,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( A splanchnic nerves that arises from sacral spinal nerves S2, S3, S4 to provide parasympathetic innervation to the hindgut. + EHDAA2:0001432 EHDAA:5628 FMA:16901 @@ -695806,6 +696827,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( nn erigentes pelvic splanchnic nerve UBERON:0018675 + pelvic splanchnic nerve @@ -695926,10 +696948,12 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( Thoracic splanchnic nerves are splanchnic nerves that arise from the sympathetic trunk in the thorax and travel inferiorly to provide sympathetic innervation to the abdomen. The nerves contain preganglionic sympathetic and general visceral afferent fibers. + FMA:6280 Wikipedia:Thoracic_splanchnic_nerves uberon UBERON:0018679 + thoracic splanchnic nerve @@ -695955,11 +696979,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( + FMA:6281 SCTID:280503007 greater thoracic splanchnic nerve uberon UBERON:0018680 + The nerve travels through the diaphragm and enters the abdominal cavity, where its fibers synapse at the celiac ganglia. The nerve contributes to the celiac plexus, a network of nerves located in the vicinity of where the celiac trunk branches from the abdominal aorta. The fibers in this nerve modulate the activity of the enteric nervous system of the foregut. They also provide the sympathetic innervation to the adrenal medulla, stimulating catecholamine release. greater splanchnic nerve @@ -695982,11 +697008,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( + FMA:6282 SCTID:280505000 lesser thoracic splanchnic nerve uberon UBERON:0018681 + The nerve travels inferiorly, lateral to the greater splanchnic nerve. Its fibers synapse with their postganglionic counterparts in the superior mesenteric ganglia, or in the aorticorenal ganglion. The nerve modulates the activity of the enteric nervous system of the midgut. lesser splanchnic nerve @@ -696010,12 +697038,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( The lumbar splanchnic nerves are splanchnic nerves that arise from the lumbar part of the sympathetic trunk and travel to an adjacent plexus near the aorta. They are originated from L1 and L2. These nerves contain preganglionic sympathetic and visceral afferent fibers. The site of synapse is found in the prevertebral ganglia and innervate the smooth muscle and glands of the pelvic viscera and hindgut. + FMA:6287 SCTID:280507008 Wikipedia:Lumbar_splanchnic_nerves uberon lumbar splanchnic nerve UBERON:0018683 + lumbar splanchnic nerve @@ -699102,6 +700132,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( BIRNLEX:1533 DHBA:12887 DMBA:17747 + HBA:9334 glossopharyngeal nerve root uberon UBERON:0019310 @@ -700981,8 +702012,12 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022264 optic radiation - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -701086,8 +702121,12 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022268 planum temporale - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -701481,8 +702520,12 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022276 splenic flexure of colon - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb @@ -701582,8 +702625,12 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022277 hepatic flexure of colon - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb @@ -702451,6 +703498,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( A branch of the ophthalmic nerve that serves to supply the mucous membrane of the nose, the tip of the nose, and the conjunctiva. + BTO:0001452 FMA:52668 NCIT:C33159 @@ -702462,6 +703510,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( nasociliary nerve nervus nasociliaris UBERON:0022300 + nasociliary nerve @@ -702565,6 +703614,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( A branch of the nasociliary nerve that innervates the ciliary muscles, the iris, and the cornea. + FMA:52691 SCTID:280228003 Wikipedia:Long_ciliary_nerves @@ -702572,6 +703622,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( long ciliary nerve nervi ciliares longi UBERON:0022301 + long ciliary nerve @@ -702646,6 +703697,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( A branch of the ciliary ganglion that innervates the ciliary muscles, the iris, and the tunics of the eyeball. + Contains preganglionic parasympathetic axons. FMA:7041 SCTID:417598000 @@ -702656,6 +703708,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( nervi ciliares brevis short ciliary nerve UBERON:0022302 + short ciliary nerve @@ -704464,8 +705517,12 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022364 occipital fusiform gyrus - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -704569,8 +705626,12 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022383 anterior parahippocampal gyrus - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -705229,9 +706290,9 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1616 - UMLS:C0694579 - neuronames:46 + + + FS simian fossa uberon @@ -705491,7 +706552,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1003 + predominantly gray regional part of pretectal region uberon UBERON:0022480 @@ -705511,7 +706572,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1039 + uberon UBERON:0022515 obsolete regional part of organ cavity @@ -705561,7 +706622,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1068 + regional part of solitary nucleus uberon UBERON:0022543 @@ -705591,7 +706652,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1094 + regional part of a lobe of the cerebellum uberon UBERON:0022569 @@ -705611,7 +706672,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:11 + uberon UBERON:0022575 obsolete regional part of body system @@ -705623,7 +706684,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1122 + regional part of peripheral nervous system uberon UBERON:0022598 @@ -705643,7 +706704,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1145 + uberon UBERON:0022620 obsolete regional part of eye @@ -705655,7 +706716,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1174 + predominantly gray regional part of epithalamus uberon UBERON:0022647 @@ -705729,7 +706790,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1177 + regional part of parietal lobe uberon UBERON:0022650 @@ -705749,7 +706810,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1181 + regional part of ear uberon UBERON:0022654 @@ -705769,7 +706830,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1188 + regional part of occipital lobe uberon UBERON:0022660 @@ -705789,7 +706850,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1193 + predominantly gray regional part of lateral hypothalamic region uberon UBERON:0022665 @@ -705809,7 +706870,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1209 + regional part of cerebral peduncle uberon UBERON:0022681 @@ -705868,7 +706929,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1229 + predominantly gray regional part of posterior hypothalamic region uberon UBERON:0022701 @@ -705964,7 +707025,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1260 + superficial feature part of midbrain tectum uberon UBERON:0022732 @@ -705984,7 +707045,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1268 + superficial feature part of pons uberon UBERON:0022740 @@ -706004,7 +707065,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1269 + regional part of central nervous system uberon UBERON:0022741 @@ -706024,7 +707085,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1284 + regional part of sacral spinal cord uberon UBERON:0022756 @@ -706054,7 +707115,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1289 + superficial feature part of intermediate hypothalamic region uberon UBERON:0022761 @@ -706100,7 +707161,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1306 + regional part of medial mammillary nucleus uberon UBERON:0022778 @@ -706162,7 +707223,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1351 + superficial feature part of diencephalon uberon UBERON:0022822 @@ -706182,7 +707243,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1357 + predominantly gray regional part of medullary raphe nuclear complex uberon UBERON:0022828 @@ -706212,7 +707273,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1405 + regional part of oculomotor nuclear complex uberon UBERON:0022877 @@ -706232,7 +707293,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1418 + regional part of red nucleus uberon UBERON:0022890 @@ -706252,7 +707313,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1423 + regional part of habenula uberon UBERON:0022895 @@ -706272,7 +707333,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1465 + predominantly gray regional part of midbrain tegmentum uberon UBERON:0022937 @@ -706379,7 +707440,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1472 + predominantly white regional part of midbrain tegmentum uberon UBERON:0022944 @@ -706399,7 +707460,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1485 + regional part of midbrain reticular formation uberon UBERON:0022957 @@ -706419,7 +707480,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1505 + regional part of cervical spinal cord uberon UBERON:0022976 @@ -706439,7 +707500,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1517 + regional part of thalamus uberon UBERON:0022988 @@ -706459,7 +707520,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1526 + superficial feature part of medulla oblongata uberon UBERON:0022997 @@ -706479,7 +707540,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1536 + predominantly white regional part of posterior hypothalamic region uberon UBERON:0023007 @@ -706499,7 +707560,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1542 + superficial feature part of posterior hypothalamic region uberon UBERON:0023013 @@ -706519,7 +707580,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1549 + predominantly white regional part of septum pellucidum uberon UBERON:0023020 @@ -706539,7 +707600,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1573 + regional part of cerebral white matter uberon UBERON:0023044 @@ -706559,7 +707620,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1576 + regional part of hypophysis uberon UBERON:0023047 @@ -706579,7 +707640,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1602 + regional part of lumbar spinal cord uberon UBERON:0023074 @@ -706599,7 +707660,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1620 + predominantly white regional part of epithalamus uberon UBERON:0023092 @@ -706666,7 +707727,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1625 + regional part of temporal lobe uberon UBERON:0023097 @@ -706686,7 +707747,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1630 + predominantly gray regional part of intermediate hypothalamic region uberon UBERON:0023102 @@ -706706,7 +707767,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1656 + predominantly gray regional part of hypothalamus uberon UBERON:0023127 @@ -706736,7 +707797,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1693 + regional part of septum uberon UBERON:0023163 @@ -706782,7 +707843,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2546 + cytoarchitectural part of cerebral cortex uberon UBERON:0023294 @@ -706802,7 +707863,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2570 + regional part of ventral cochlear nucleus uberon UBERON:0023317 @@ -706822,7 +707883,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2633 + predominantly gray part of medulla oblongata uberon UBERON:0023362 @@ -706956,7 +708017,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2671 + regional part of spinal cord dorsal horn uberon UBERON:0023399 @@ -706976,7 +708037,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2675 + regional part of spinal cord gray commissure uberon UBERON:0023401 @@ -706996,7 +708057,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2678 + regional part of amygdala uberon UBERON:0023404 @@ -707128,7 +708189,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:4098 + regional part of tongue uberon UBERON:0023536 @@ -707176,7 +708237,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:4109 + regional part of stratum pyramidale hippocampi uberon UBERON:0023547 @@ -707196,7 +708257,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:4114 + regional part of stratum oriens uberon UBERON:0023552 @@ -707216,7 +708277,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:4118 + regional part of stratum radiatum uberon UBERON:0023556 @@ -707236,7 +708297,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:4122 + regional part of stratum lacunosum moleculare uberon UBERON:0023560 @@ -707276,7 +708337,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:702 + regional part of basal nuclear complex uberon UBERON:0023572 @@ -707296,7 +708357,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:718 + predominantly gray regional part of inferior colliculus uberon UBERON:0023587 @@ -707356,7 +708417,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:761 + regional part of anterior hypothalamic region uberon UBERON:0023628 @@ -707376,7 +708437,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:771 + regional part of pons uberon UBERON:0023636 @@ -707396,7 +708457,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:784 + regional part of granular layer of cerebellar cortex uberon UBERON:0023648 @@ -707416,7 +708477,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:785 + predominantly white regional part of hypothalamus uberon UBERON:0023649 @@ -707436,7 +708497,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:808 + predominantly white regional part of tectum uberon UBERON:0023670 @@ -707456,7 +708517,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:815 + predominantly gray regional part of tectum uberon UBERON:0023677 @@ -707476,7 +708537,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:825 + regional part of septal nuclear complex uberon UBERON:0023687 @@ -707496,7 +708557,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:833 + superficial feature part of telencephalon uberon UBERON:0023695 @@ -707516,7 +708577,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:842 + regional part of fornix uberon UBERON:0023703 @@ -707656,7 +708717,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:940 + gross anatomical part of cerebral cortex uberon UBERON:0023783 @@ -707718,7 +708779,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:947 + regional part of limbic lobe uberon UBERON:0023789 @@ -707738,7 +708799,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:949 + regional part of hindbrain uberon UBERON:0023791 @@ -707758,7 +708819,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:972 + regional part of thoracic spinal cord uberon UBERON:0023812 @@ -707778,7 +708839,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:984 + regional part of frontal lobe uberon UBERON:0023824 @@ -707798,7 +708859,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:985 + predominantly white regional part of inferior colliculus uberon UBERON:0023825 @@ -707818,7 +708879,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:987 + cytoarchitectural part of the cerebellum uberon UBERON:0023827 @@ -707986,8 +709047,12 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0023861 planum polare - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -708190,8 +709255,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( Part of body that takes the form of a thin sheet of cells or fibrous material, e.g., the meningeal coverings of the brain[NIFSTD]. - NLXANAT:090201 - UBERON:0000158 + + body membrane uberon UBERON:0023869 @@ -708326,7 +709391,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - NLXANAT:100305 + regional part of nose uberon UBERON:0023915 @@ -708545,7 +709610,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( The telencephalon of the primate. - NLXANAT:1005012 + telencephalon of primate uberon primate telencephalon @@ -708617,8 +709682,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( The telencephalon of a rodent. - NLXANAT:1005015 - UBERON:0001893 + + telencephalon of rodent uberon rodent telencephalon @@ -708653,8 +709718,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( The brain of a rodent. - NLXANAT:1005016 - UBERON:0000955 + + brain of rodent uberon rodent brain @@ -708688,8 +709753,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - NLXANAT:1005019 - UBERON:0009951 + + olfactory bulb main of rodent uberon UBERON:0023942 @@ -709316,7 +710381,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - NLXANAT:20090206 + regional part of spinal nerve uberon UBERON:0024065 @@ -709336,7 +710401,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - NLXANAT:20090305 + regional part of nucleus accumbens uberon UBERON:0024073 @@ -709425,7 +710490,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - NLXANAT:20090401 + regional part of stratum lucidum uberon UBERON:0024081 @@ -709444,7 +710509,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - NLXANAT:20090406 + cytoarchitectural part of dorsal tegmental nucleus uberon UBERON:0024086 @@ -709528,7 +710593,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1004 + regional part of adenohypophysis uberon UBERON:0024125 @@ -709584,7 +710649,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1041 + regional part of pontine tegmentum uberon UBERON:0024161 @@ -709604,7 +710669,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1053 + regional part of inner ear uberon UBERON:0024173 @@ -709624,7 +710689,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1058 + regional part orbital frontal cortex uberon UBERON:0024177 @@ -709644,7 +710709,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1063 + superficial feature part of cerebral cortex uberon UBERON:0024182 @@ -709772,7 +710837,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1092 + predominantly white regional part of cerebellar cortex uberon UBERON:0024211 @@ -709792,8 +710857,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1093 - UBERON:0001870 + + predominantly gray regional part of frontal lobe uberon UBERON:0024212 @@ -709812,7 +710877,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1114 + regional part of deep cerebellar nuclear complex uberon UBERON:0024234 @@ -709832,7 +710897,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1134 + regional part of autonomic nervous system uberon UBERON:0024254 @@ -709852,7 +710917,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1168 + regional part of basal part of pons uberon UBERON:0024285 @@ -709872,8 +710937,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1198 - UBERON:0016530 + + predominantly gray regional part of parietal lobe uberon UBERON:0024314 @@ -709892,7 +710957,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1210 + predominantly gray regional part of anterior hypothalamic region uberon UBERON:0024326 @@ -709912,7 +710977,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1213 + predominantly white regional part of cerebral peduncle uberon UBERON:0024329 @@ -709932,7 +710997,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1219 + predominantly white regional part of anterior hypothalamic region uberon UBERON:0024335 @@ -709952,7 +711017,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1231 + regional part of orbital gyri complex uberon UBERON:0024347 @@ -709972,7 +711037,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1265 + regional part of transverse frontopolar gyri complex uberon UBERON:0024381 @@ -710032,7 +711097,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1278 + regional part of parahippocampal gyrus uberon UBERON:0024394 @@ -710052,7 +711117,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1281 + regional part of tuberomammillary nucleus uberon UBERON:0024397 @@ -710072,7 +711137,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1322 + predominantly gray regional part of medial mammillary nucleus uberon UBERON:0024437 @@ -710092,7 +711157,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1324 + superficial feature part of frontal lobe uberon UBERON:0024439 @@ -710112,8 +711177,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1334 - UBERON:0002245 + + hemispheric parts of the cerebellar cortex uberon UBERON:0024449 @@ -710132,7 +711197,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1364 + regional part of inferior parietal cortex uberon UBERON:0024479 @@ -710152,8 +711217,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1386 - UBERON:0016540 + + predominantly gray regional part of occipital lobe uberon UBERON:0024501 @@ -710172,7 +711237,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1402 + regional part of neuraxis cavity uberon UBERON:0024518 @@ -710192,7 +711257,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1408 + predominantly gray regional part of midbrain reticular formation uberon UBERON:0024524 @@ -710212,7 +711277,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1412 + predominantly gray regional part of oculomotor nuclear complex uberon UBERON:0024528 @@ -710232,7 +711297,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1425 + predominantly gray regional part of red nucleus uberon UBERON:0024541 @@ -710252,7 +711317,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1434 + predominantly white regional part of red nucleus uberon UBERON:0024550 @@ -710272,7 +711337,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1443 + predominantly gray regional part of habenula uberon UBERON:0024559 @@ -710292,7 +711357,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1506 + regional part of sacral spinal cord white matter uberon UBERON:0024621 @@ -710312,7 +711377,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1507 + predominantly gray regional part of basal nuclear complex uberon UBERON:0024622 @@ -710332,7 +711397,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1538 + superficial feature part of temporal lobe uberon UBERON:0024653 @@ -710352,7 +711417,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1593 + superficial feature part of hypophysis uberon UBERON:0024708 @@ -710372,7 +711437,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1599 + regional part of cingulate gyrus uberon UBERON:0024714 @@ -710392,7 +711457,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1605 + regional part of outer ear uberon UBERON:0024721 @@ -710412,8 +711477,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1633 - UBERON:0016538 + + predominantly gray regional part of temporal lobe uberon UBERON:0024749 @@ -710433,7 +711498,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1647 + regional part of lumbar spinal cord white matter uberon UBERON:0024762 @@ -710453,7 +711518,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1679 + predominantly gray regional part of thalamus uberon UBERON:0024793 @@ -710473,7 +711538,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1686 + predominantly white regional part of thalamus uberon UBERON:0024800 @@ -710493,7 +711558,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1713 + regional part of middle ear uberon UBERON:0024826 @@ -710513,7 +711578,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1715 + regional part of preoptic area uberon UBERON:0024828 @@ -710607,7 +711672,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1793 + regional part of retina uberon UBERON:0024904 @@ -710627,8 +711692,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1796 - UBERON:0001869 + + hemisphere parts of cerebral cortex uberon cerebral hemisphere @@ -710722,8 +711787,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2554 - UMLS:C0458763 + + regional part of cochlear canal uberon division of cochlear canal @@ -710750,8 +711815,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2560 - UBERON:0001855 + + duct part of cochlear canal uberon UBERON:0024952 @@ -710770,7 +711835,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2571 + predominantly gray part of ventral cochlear nucleus uberon UBERON:0024962 @@ -710790,7 +711855,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2660 + predominantly gray part of solitary nucleus uberon UBERON:0025033 @@ -710810,7 +711875,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2697 + regional part of corticomedial nuclear complex uberon UBERON:0025067 @@ -710830,7 +711895,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2708 + regional part of olfactory cortex uberon UBERON:0025078 @@ -711008,7 +712073,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:4034 + superficial feature part of parietal cortex uberon UBERON:0025116 @@ -711028,7 +712093,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:4046 + regional part of longitudinal fissure uberon UBERON:0025128 @@ -711048,7 +712113,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:4065 + cytoarchitectural part of occipital lobe uberon UBERON:0025147 @@ -711068,7 +712133,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:4066 + cytoarchitectural part of frontal lobe uberon UBERON:0025148 @@ -711088,8 +712153,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:4100 - http://uri.neuinfo.org/nif/nifstd/nifext_13 + + UBERON:0025487 regional part of gustatory epithelium uberon @@ -711110,7 +712175,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:723 + regional part of cervical spinal cord white matter uberon UBERON:0025236 @@ -711130,7 +712195,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:738 + predominantly white regional part of fornix uberon UBERON:0025250 @@ -711150,7 +712215,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:742 + regional part of anterior commissure uberon UBERON:0025254 @@ -711207,7 +712272,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:757 + regional part of hippocampal formation uberon UBERON:0025268 @@ -711227,7 +712292,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:775 + regional part of substantia nigra uberon UBERON:0025284 @@ -711247,7 +712312,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:821 + regional part of inferior frontal gyrus uberon UBERON:0025327 @@ -711267,8 +712332,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:831 - UBERON:0016542 + + predominantly gray regional part of limbic lobe uberon UBERON:0025337 @@ -711287,7 +712352,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:832 + predominantly gray regional part of septal nuclear complex uberon UBERON:0025338 @@ -711307,7 +712372,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:921 + regional part of neurohypophysis uberon UBERON:0025409 @@ -711327,7 +712392,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:930 + regional part of cingulate cortex uberon UBERON:0025418 @@ -711347,7 +712412,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:959 + regional part of cerebellar white matter uberon UBERON:0025444 @@ -711367,7 +712432,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:989 + regional part of thoracic spinal cord gray matter uberon UBERON:0025473 @@ -711891,7 +712956,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( Part of brain and spinal cord excluding retina. - NLXANAT:1010010 + part of neuraxis uberon UBERON:0025619 @@ -711990,7 +713055,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - NLXANAT:20090510 + regional part of dorsal cochlear nucleus uberon UBERON:0025744 @@ -712036,7 +713101,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1013 + predominantly gray regional part of adenohypophysis uberon UBERON:0025764 @@ -712112,7 +713177,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1027 + predominantly white regional part of basal part of pons uberon UBERON:0025778 @@ -712132,7 +713197,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1061 + predominantly gray regional part of pontine tegmentum uberon UBERON:0025811 @@ -712162,7 +713227,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1077 + regional part of pontine reticular formation uberon UBERON:0025827 @@ -712182,7 +713247,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1078 + regional part of superior olivary complex uberon UBERON:0025828 @@ -712244,7 +713309,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1098 + regional part of anterior nucleus of hypothalamus uberon UBERON:0025848 @@ -712291,7 +713356,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1147 + regional part of dentate gyrus uberon UBERON:0025897 @@ -712311,7 +713376,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1149 + predominantly white regional part of hippocampal formation uberon UBERON:0025899 @@ -712366,7 +713431,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1179 + regional part of enteric nervous system uberon UBERON:0025927 @@ -712386,7 +713451,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1180 + predominantly gray regional part of basal part of pons uberon UBERON:0025928 @@ -712406,7 +713471,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1182 + regional part of dentate nucleus uberon UBERON:0025930 @@ -712426,7 +713491,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1186 + regional part of hippocampus proper uberon UBERON:0025934 @@ -712446,7 +713511,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1236 + predominantly gray regional part of orbital gyri complex uberon UBERON:0025983 @@ -712466,7 +713531,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1246 + predominantly gray medial regional part of thalamus uberon UBERON:0025993 @@ -712486,7 +713551,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1253 + regional part of cerebral ventricular cavity uberon ventricles of brain @@ -712513,7 +713578,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1254 + regional part of median eminence uberon UBERON:0026001 @@ -712566,7 +713631,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1273 + predominantly gray regional part of transverse frontopolar gyri complex uberon UBERON:0026020 @@ -712586,7 +713651,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1285 + predominantly gray regional part of parahippocampal gyrus uberon UBERON:0026032 @@ -712606,7 +713671,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1293 + predominantly gray dorsal regional part of thalamus uberon UBERON:0026040 @@ -712626,7 +713691,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1301 + predominantly white dorsal regional part of thalamus uberon UBERON:0026048 @@ -712646,7 +713711,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1317 + regional part of middle frontal gyrus uberon UBERON:0026063 @@ -712666,7 +713731,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1333 + regional part of paravsuprachiasmatic nucleus regional part of suprachiasmatic nucleus uberon @@ -712693,7 +713758,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1360 + superficial feature part of cerebral peduncle uberon UBERON:0026106 @@ -712713,7 +713778,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1367 + regional part of neostriatum uberon UBERON:0026113 @@ -712733,7 +713798,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1371 + predominantly gray regional part of inferior parietal cortex uberon UBERON:0026117 @@ -712775,7 +713840,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1406 + regional part of paraventricular nucleus of hypothalamus uberon UBERON:0026153 @@ -712841,7 +713906,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1524 + predominantly gray anterior regional part of thalamus uberon UBERON:0026270 @@ -712861,7 +713926,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1525 + regional part of cervical spinal cord gray matter uberon UBERON:0026271 @@ -712921,7 +713986,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1550 + predominantly gray regional part of cingulate gyrus uberon UBERON:0026296 @@ -712941,7 +714006,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1578 + regional part of transverse temporal cortex uberon UBERON:0026324 @@ -713096,7 +714161,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1701 + predominantly gray ventral regional part of thalamus uberon UBERON:0026445 @@ -713116,7 +714181,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1712 + predominantly gray posterior regional part of thalamus uberon UBERON:0026456 @@ -713136,8 +714201,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1794 - UMLS:C0931696 + + regional part of cochlea uberon UBERON:0026536 @@ -713258,7 +714323,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2541 + regional part of macula uberon UBERON:0026564 @@ -713391,8 +714456,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2565 - UMLS:C1186240 + + regional part of cochlear duct uberon division of cochlear canal @@ -713502,7 +714567,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2685 + regional part of basolateral nuclear complex uberon UBERON:0026686 @@ -713522,7 +714587,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2699 + predominantly gray part of corticomedial nuclear complex uberon UBERON:0026700 @@ -713576,7 +714641,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:4007 + regional part of posterior superior frontal sulcus uberon UBERON:0026720 @@ -713798,7 +714863,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:4049 + regional part of calcarine sulcus uberon UBERON:0026762 @@ -713971,7 +715036,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:700 + predominantly gray regional part of preoptic area uberon UBERON:0026845 @@ -713991,7 +715056,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:782 + predominantly gray regional part of substantia nigra uberon UBERON:0026921 @@ -714011,7 +715076,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:829 + predominantly gray regional part of inferior frontal gyrus uberon UBERON:0026966 @@ -714031,7 +715096,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:839 + predominantly white regional part of anterior commissure uberon UBERON:0026975 @@ -714051,7 +715116,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:849 + predominantly gray midline regional part of thalamus uberon UBERON:0026982 @@ -714071,7 +715136,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:856 + regional part of superior temporal sulcus uberon UBERON:0026986 @@ -714091,7 +715156,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:885 + regional part of thoracic spinal cord white matter uberon UBERON:0027007 @@ -714111,7 +715176,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:933 + predominantly gray regional part of neurohypophysis uberon UBERON:0027052 @@ -714157,7 +715222,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:960 + regional part of anterior cingulate cortex uberon UBERON:0027076 @@ -714177,7 +715242,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:962 + predominantly gray intralaminal regional part of thalamus uberon UBERON:0027078 @@ -714197,7 +715262,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:979 + regional part of cerebellar peduncular complex uberon UBERON:0027094 @@ -714217,7 +715282,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:988 + predominantly gray lateral regional part of thalamus uberon UBERON:0027103 @@ -714359,7 +715424,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - NLXANAT:1005029 + cytoarchitectural part of retina uberon UBERON:0027227 @@ -714411,7 +715476,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - NLXANAT:1010003 + matrix part of body of caudate nucleus uberon UBERON:0027243 @@ -714554,7 +715619,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - NLXANAT:1010007 + striosomal part of tail of caudate nucleus uberon UBERON:0027247 @@ -714683,7 +715748,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - NLXANAT:20081243 + regional parts of the interpositus nucleus uberon UBERON:0027314 @@ -714778,7 +715843,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - NLXANAT:20090309 + regional part of supraoptic nucleus uberon UBERON:0027352 @@ -714876,7 +715941,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - NLXANAT:20090511 + cytoarchitectural part of dorsal cochlear nucleus uberon granule cell layer of dcn @@ -714909,7 +715974,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1034 + predominantly gray regional part of dentate nucleus uberon UBERON:0027417 @@ -714929,7 +715994,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1071 + predominantly gray regional part of pontine reticular formation uberon UBERON:0027453 @@ -714987,7 +716052,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1183 + predominantly gray regional part of dentate gyrus uberon UBERON:0027563 @@ -715007,7 +716072,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1205 + regional part of caudate nucleus uberon UBERON:0027584 @@ -715027,7 +716092,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1221 + predominantly gray regional part of neostriatum uberon UBERON:0027600 @@ -715047,7 +716112,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1224 + regional part of globus pallidus uberon UBERON:0027603 @@ -715067,7 +716132,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1225 + predominantly gray regional part of ventral nuclear group uberon UBERON:0027604 @@ -715087,7 +716152,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1252 + predominantly gray regional part of medial dorsal nucleus uberon UBERON:0027631 @@ -715107,7 +716172,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1270 + regional part of lateral ventricle uberon UBERON:0027649 @@ -715127,7 +716192,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1272 + predominantly gray regional part of median eminence uberon UBERON:0027651 @@ -715147,7 +716212,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1286 + predominantly gray regional part of metathalamus uberon UBERON:0027665 @@ -715167,7 +716232,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1308 + predominantly white dorsal regional part of metathalamus uberon UBERON:0027687 @@ -715241,7 +716306,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1350 + predominantly gray regional part of anterior nuclear group uberon UBERON:0027728 @@ -715261,7 +716326,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1370 + predominantly gray regional part of superior olivary complex uberon UBERON:0027748 @@ -715281,7 +716346,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1377 + predominantly white regional part of superior olivary complex uberon UBERON:0027755 @@ -715301,7 +716366,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1380 + regional part of paraventricular nucleus of hypothalamus magnocellular division uberon UBERON:0027758 @@ -715321,7 +716386,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1382 + regional part of superior olive uberon UBERON:0027760 @@ -715395,7 +716460,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1417 + regional part of thoracic spinal cord dorsal horn uberon UBERON:0027796 @@ -715415,7 +716480,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1435 + regional part of paraventricular nucleus of hypothalamus descending division uberon UBERON:0027814 @@ -715435,7 +716500,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1449 + predominantly gray regional part of hippocampal formation uberon UBERON:0027828 @@ -715455,7 +716520,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1495 + regional part of sacral spinal cord gray matter uberon UBERON:0027874 @@ -715475,7 +716540,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1631 + regional part of lumbar spinal cord gray matter uberon UBERON:0028010 @@ -715495,7 +716560,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1703 + regional part of cervical spinal cord dorsal horn uberon UBERON:0028079 @@ -715525,7 +716590,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2530 + regional part of spiral organ of corti uberon UBERON:0028192 @@ -715611,7 +716676,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2545 + regional part of fovea uberon UBERON:0028200 @@ -715631,7 +716696,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2550 + regional part of vestibular ganglion uberon UBERON:0028205 @@ -715651,7 +716716,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2681 + predominantly gray regional part of amygdala uberon UBERON:0028314 @@ -715671,7 +716736,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2684 + predominantly gray part of basolateral nuclear complex uberon UBERON:0028317 @@ -715691,7 +716756,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2693 + regional part of basal amygdaloid nucleus uberon UBERON:0028326 @@ -715711,7 +716776,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2704 + regional part of entorhinal cortex uberon UBERON:0028337 @@ -716745,7 +717810,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:772 + predominantly gray part of posterior nuclear complex uberon UBERON:0028544 @@ -716765,7 +717830,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:852 + predominantly gray part of intralaminar nuclear group uberon UBERON:0028615 @@ -716785,7 +717850,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:854 + predominantly gray regional part of midline nuclear group uberon UBERON:0028616 @@ -716871,7 +717936,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:978 + regional part of substantia nigra pars reticulata uberon UBERON:0028725 @@ -716891,7 +717956,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:997 + predominantly gray regional part of lateral nuclear group uberon UBERON:0028744 @@ -717309,7 +718374,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1124 + predominantly gray regional part of ventral lateral nucleus uberon UBERON:0029140 @@ -717329,7 +718394,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1203 + predominantly white dorsal regional part of medial geniculate body uberon UBERON:0029215 @@ -717349,7 +718414,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1385 + predominantly gray regional part of superior olive uberon UBERON:0029396 @@ -717369,7 +718434,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1403 + regional part of paraventricular nucleus of hypothalamus magnocellular division - posterior magnocellular part uberon UBERON:0029415 @@ -717481,7 +718546,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1583 + predominantly gray regional part of lateral geniculate body uberon UBERON:0029594 @@ -717501,7 +718566,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1592 + predominantly gray regional part of medial geniculate body uberon UBERON:0029603 @@ -717561,7 +718626,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1617 + predominantly white regional part of globus pallidus uberon UBERON:0029629 @@ -717620,7 +718685,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1671 + predominantly gray regional part of ventral posterior nucleus uberon UBERON:0029681 @@ -717640,7 +718705,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2527 + regional part of basilar membrane uberon UBERON:0029822 @@ -717660,7 +718725,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2574 + regional part of trapezoid nuclear complex uberon UBERON:0029861 @@ -717680,7 +718745,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2688 + regional part of lateral amygdaloid nucleus uberon UBERON:0029954 @@ -717700,7 +718765,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2694 + predominantly gray part of basal amygdaloid nucleus uberon UBERON:0029960 @@ -717720,7 +718785,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:709 + predominantly gray regional part of ventral anterior nucleus uberon UBERON:0030119 @@ -717740,7 +718805,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:841 + predominantly gray regional part of pulvinar uberon UBERON:0030242 @@ -717820,7 +718885,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:948 + predominantly gray part of rostral intralaminar nuclei uberon UBERON:0030330 @@ -717913,7 +718978,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1545 + predominantly gray regional part of globus pallidus uberon UBERON:0031196 @@ -717933,7 +718998,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1664 + predominantly gray regional part of ventral posterolateral nucleus uberon UBERON:0031314 @@ -718016,7 +719081,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:924 + predominantly gray regional part of ventral posteromedial nucleus uberon UBERON:0031948 @@ -718178,7 +719243,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:791 + regional part of lumbar spinal cord dorsal horn uberon UBERON:0034667 @@ -720288,6 +721353,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( The autonomic nerve is a small nerve which carries postganglionic sympathetic and parasympathetic neurons from the zygomaticotemporal nerve; a branch of the maxillary nerve, to the lacrimal nerve; a branch of the ophthalmic nerve. These neurons derive from the superior cervical ganglion and the pterygopalatine ganglion respectively. They will travel to the lacrimal gland via the lacrimal nerve. Parasympathetic will induce lacrimation and vice versa. + EMAPA:37957 FMA:5866 MESH:D017776 @@ -720297,6 +721363,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( visceral nerve uberon UBERON:0034728 + autonomic nerve @@ -729035,8 +730102,11 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035040 superior rectal artery - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb @@ -729616,7 +730686,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( https://github.com/obophenotype/uberon/issues/3158 - UBERON:0005483 + uberon UBERON:0035075 Obsoleted as it is redundant with 'thymus lobe'. @@ -733180,8 +734250,11 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035180 sigmoid artery - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb @@ -735127,7 +736200,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( uberon UBERON:0035331 base of prostate - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb @@ -735224,11 +736298,11 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - GO:0045202 - FMA:67408 - NCIT:C13281 - SCTID:362298009 - UMLS:C0039062 + + + + + uberon UBERON:0035344 obsolete synapse @@ -735485,8 +736559,12 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035374 small cardiac vein - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb @@ -735720,8 +736798,9 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035392 cystic vein - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb @@ -736090,7 +737169,9 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035422 circumflex branch of left coronary artery - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb @@ -736382,7 +737463,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( uberon UBERON:0035441 apex of prostate - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb @@ -736434,8 +737516,10 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( uberon UBERON:0035444 triangular ligament of liver - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb @@ -738070,7 +739154,11 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( uberon UBERON:0035548 colic artery - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb @@ -738403,10 +739491,10 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( OBSOLETE: The fascia dentata is the earliest stage of the hippocampal circuit. Its primary input is the perforant path from the superficial layers of entorhinal cortex. Its principal neurons are tiny granule cells which give rise to unmyelinated axons called the mossy fibers which project to the hilus and CA3. The fascia dentata of the rat contains approximately 1,000,000 granule cells. It receives feedback connections from mossy cells in the hilus at distant levels in the septal and temporal directions. The fascia dentata and the hilus together make up the dentate gyrus. As with all regions of the hippocampus, the dentate gyrus also receives GABAergic and cholinergic input from the medial septum and the diagonal band of Broca. A quick perusal of definitions for fascia dentata suggests that it is sometimes used to refer to the entire dentate gyrus, in which case it should be a synonym, and sometimes to a specific cytoarchitectural field of dentate gyrus. More research is needed. In the meanwhile, I have not assigned it as a part of dentate gyrus, assigning instead the cytoarchitectural layers. (Maryann Martone) - UBERON:0001885 - BIRNLEX:1191 - BTO:0002615 - neuronames:180 + + + + UMLS:C0152314 uberon fascia dentata @@ -742071,6 +743159,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( The inferior mesenteric plexus is derived chiefly from the aortic plexus. It surrounds the inferior mesenteric artery, and divides into a number of secondary plexuses, which are distributed to all the parts supplied by the artery, viz. , the left colic and sigmoid plexuses, which supply the descending and sigmoid parts of the colon; and the superior hemorrhoidal plexus, which supplies the rectum and joins in the pelvis with branches from the pelvic plexuses. + FMA:6641 SCTID:362495005 Wikipedia:Inferior_mesenteric_plexus @@ -742079,6 +743168,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( plexus nervosus mesentericus inferior uberon UBERON:0035770 + inferior mesenteric nerve plexus @@ -742114,9 +743204,11 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( + SCTID:314752009 uberon UBERON:0035771 + mesenteric plexus @@ -742126,9 +743218,11 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( + FMA:80133 uberon UBERON:0035772 + aortic plexus @@ -746604,8 +747698,12 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035932 anterior segment of paracentral lobule - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb @@ -747362,9 +748460,9 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( Historically the term cerebrum has been used for several different parts of the CNS including the whole brain, the cerebral hemispheres and the sum of cerebral cortex and adjacent cerebral white matter. A thorough discussion of the definitional history is to be found in Anthoney-1994. - UBERON:0001869 - UBERON:0001893 - neuronames:2068 + + + uberon UBERON:0035955 obsolete cerebrum @@ -747562,8 +748660,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( 1: The trunk of an elephant; also: any long flexible snout. 2: Any of various elongated or extensible tubular processes as the sucking organ of a butterfly of the oral region of an invertebrate. - BTO:0001117 - UBERON:0014479 + + uberon UBERON:0035961 obsolete proboscis @@ -751142,6 +752240,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( The tympanic nerve (nerve of Jacobson) is a branch of the glossopharyngeal nerve found near the ear. + FMA:53480 SCTID:280289008 Wikipedia:Tympanic_nerve @@ -751152,6 +752251,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( tympanic branch tympanic branch of the glossopharyngeal UBERON:0036216 + tympanic nerve @@ -759494,8 +760594,10 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( uberon UBERON:0039222 cystic artery - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb @@ -759804,7 +760906,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - UBERON:0006656 + FMA:0329307 uberon UBERON:0039267 @@ -763000,7 +764102,7 @@ Seems out of scope for uberon and/or not very useful as a class. A cell arising during cleavage; the term encompasses the partially cleaved, incomplete cells at the blastodisc margin before they collectively form the yolk syncytial layer (YSL) in the midblastula. Kimmel et al, 1995. - CL:0000353 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon ZFA:0000093 blastomeres @@ -763688,7 +764790,7 @@ Seems out of scope for uberon and/or not very useful as a class. Median fin skeleton that is located posterior to the anus. - UBERON:4000166 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:2000167 @@ -764257,8 +765359,8 @@ Seems out of scope for uberon and/or not very useful as a class. - UBERON:0008993 - ZFA:0000197 + + uberon UBERON:2000197 obsolete dorsal nucleus @@ -765920,7 +767022,7 @@ Seems out of scope for uberon and/or not very useful as a class. - UBERON:0001107 + ZFA:0000283 uberon UBERON:2000283 @@ -766404,8 +767506,8 @@ Seems out of scope for uberon and/or not very useful as a class. - UBERON:0008993 - ZFA:0000302 + + uberon UBERON:2000302 obsolete ventral nucleus @@ -767632,7 +768734,7 @@ Seems out of scope for uberon and/or not very useful as a class. - UBERON:0011778 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:2000387 @@ -768999,7 +770101,7 @@ Seems out of scope for uberon and/or not very useful as a class. This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon - UBERON:0011145 + uberon UBERON:2000463 false @@ -770366,7 +771468,7 @@ Seems out of scope for uberon and/or not very useful as a class. Cells (incompletely cleaved before the YSL forms), located at the surface just at the rim of the blastodisc, external to the deep blastomeres. Kimmel et al, 1995. - ZFA:0000541 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon ZFA:0000541 marginal blastomeres @@ -771295,7 +772397,7 @@ Seems out of scope for uberon and/or not very useful as a class. https://github.com/obophenotype/uberon/issues/3160 - UBERON:0011299 + uberon UBERON:2000597 Obsoleted as it is redundant with 'white matter of telencephalon'. @@ -771913,7 +773015,7 @@ no information about this class, may be zebrafish specific nomenclature. - UBERON:0002150 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon ZFA:0000624 brachium conjunctivium @@ -773129,7 +774231,7 @@ Not clear that directional labels for optic tract parts are consistent across ta - CL:0000853 + ZFA:0000688 support cells uberon @@ -775398,7 +776500,7 @@ Not clear that directional labels for optic tract parts are consistent across ta - CL:0005000 + ZFA:0000778 interneurons spinal cord uberon @@ -777338,7 +778440,7 @@ Not clear that directional labels for optic tract parts are consistent across ta Median fin skeleton supporting the caudal fin. - UBERON:4000167 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:2000862 @@ -779264,7 +780366,7 @@ Not clear that directional labels for optic tract parts are consistent across ta - UBERON:0003077 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:2000942 @@ -782046,7 +783148,7 @@ Seems out of scope for uberon and/or not very useful as a class. The caudal fin is the most posterior median fin. It is composed of a complex of three modified centra and modified neural and hemal arches and spines. Mabee and Bird, 2001. - UBERON:4000164 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon nageoire caudale tail @@ -782264,7 +783366,7 @@ Seems out of scope for uberon and/or not very useful as a class. - UBERON:0003081 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon ZFA:0001065 uberon @@ -782677,7 +783779,7 @@ Seems out of scope for uberon and/or not very useful as a class. This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon - CL:0000023 + ZFA:0001109 egg uberon @@ -782772,7 +783874,7 @@ Seems out of scope for uberon and/or not very useful as a class. Postcranial axial skeleton that is unpaired and located on the sagittal plane of the organism. - UBERON:4000170 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon axial fin skeleton unpaired fin skeleton @@ -782812,7 +783914,7 @@ Seems out of scope for uberon and/or not very useful as a class. Median fin skeleton located on the dorsal surface of the organism. - UBERON:4000168 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:2001124 @@ -783543,7 +784645,7 @@ Seems out of scope for uberon and/or not very useful as a class. Median fin that is located posterior to the anus. - UBERON:4000163 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon nageoire anale proctoptère @@ -784373,7 +785475,7 @@ Seems out of scope for uberon and/or not very useful as a class. - UBERON:0001775 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon ZFA:0001203 uberon @@ -785802,7 +786904,7 @@ Synonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bo - UBERON:0006284 + This class was obsoleted as it was discovered to be equivalent to an existing class ZFA:0001259 forebrain vesicle @@ -786786,7 +787888,7 @@ Synonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bo - CL:0000020 + ZFA:0009007 uberon UBERON:2001337 @@ -788253,7 +789355,7 @@ Synonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bo Lepidotrichium which is part of the dorsal fin. - UBERON:4000177 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon dorsal fin lepidotrichia dorsal fin ray @@ -788381,7 +789483,7 @@ Synonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bo Lepidotrichium which is part of the anal fin. - UBERON:4000176 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon anal fin lepidotrichia anal fin ray @@ -788793,7 +789895,7 @@ Synonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bo - UBERON:0015178 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon ZFA:0001462 somite border cell @@ -789020,7 +790122,7 @@ Synonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bo Cells (completely cleaved), located underneath the superficial blastomeres and internal to the marginal blastomeres. Kimmel et al, 1995. - ZFA:0001473 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon ZFA:0001473 uberon @@ -789280,7 +790382,7 @@ Synonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bo Cells (completely cleaved), located at the surface of the blastodisc, above the deep blastomeres. Kimmel et al, 1995. - ZFA:0001484 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon ZFA:0001484 uberon @@ -790470,7 +791572,7 @@ Synonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bo Lepidotrichium which is part of the caudal fin. - UBERON:4000174 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon caudal fin ray uberon @@ -790503,7 +791605,7 @@ Synonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bo Lepidotrichium which is part of the pectoral fin, forming the pectoral fin skeleton and articulating with the pectoral radials. A pectoral lepidotrichium is composed of two hemitrichia that surround bundles of actinotrichia distally. - UBERON:4000175 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon pectoral fin lepidotrichia pectoral fin ray @@ -790546,7 +791648,7 @@ Synonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bo Lepidotrichium which is part of the pelvic fin. - UBERON:4000173 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon pelvic fin lepidotrichia pelvic fin ray @@ -790643,7 +791745,7 @@ Synonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bo Dermal bone that is rod-like, formed and usually contained in a fin membrane, and jointed to or adjacent to distal radials. Lepidotrichia are formed from paired hemitrichia surrounding actinotrichia. There are usually two more lepidotrichia than distal radials. - UBERON:4000172 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon fin ray uberon @@ -790771,7 +791873,7 @@ Synonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bo This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon - CL:0000023 + ZFA:0001565 uberon UBERON:2001565 @@ -790791,7 +791893,7 @@ Synonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bo This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon - CL:0000023 + ZFA:0001566 uberon UBERON:2001566 @@ -790811,7 +791913,7 @@ Synonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bo This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon - CL:0000023 + ZFA:0001567 uberon UBERON:2001567 @@ -790831,7 +791933,7 @@ Synonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bo This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon - CL:0000023 + ZFA:0001568 uberon UBERON:2001568 @@ -790851,7 +791953,7 @@ Synonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bo This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon - CL:0000023 + ZFA:0001569 mature egg unactivated egg @@ -790884,7 +791986,7 @@ Synonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bo - CL:0000025 + ZFA:0001570 activated oocyte uberon @@ -801047,7 +802149,7 @@ urohyal ventral wing (Castro and Vari 2004). Endochondral element that is ventral, median, and associated with a single pharyngeal arch in the pharyngeal arch 3-7 skeleton. - UBERON:0004740 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:2001914 @@ -802300,7 +803402,7 @@ urohyal ventral wing (Castro and Vari 2004). - UBERON:0002376 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:2001953 @@ -802842,7 +803944,7 @@ urohyal ventral wing (Castro and Vari 2004). - ZFA:0005558 + uberon UBERON:2001967 Obsoleted as we redundant with other classes. See https://github.com/obophenotype/uberon/issues/462 @@ -805602,7 +806704,7 @@ urohyal ventral wing (Castro and Vari 2004). Chemical substance that functions as an alarm signal. - CHEBI:133299 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:2002050 @@ -808303,7 +809405,7 @@ Definition reference: Albert, JS and WL Fink. 2007. PHYLOGENETIC RELATIONSHIPS O Anatomical structure that consists of a sheet of connective tissue attached to the vertebral column and dividing the epaxial and hypaxial musculature. - UBERON:0003901 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:2002131 @@ -808613,7 +809715,7 @@ Albert, JS and WL Fink. 2007. Phylogenetic relationships of fossil neotropical e Compound endochdondral and dermal bone that results from the fusion of the dermal dermopalatine and the endochondral autopalatine and forms the antero-lateral region of the palate. Commonly, it articulates with the maxilla antero-laterally and with the ethmoidal region medially. The palatine is paired. - UBERON:0001682 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:2002158 @@ -809300,7 +810402,7 @@ Albert, JS and WL Fink. 2007. Phylogenetic relationships of fossil neotropical e Muscle which is part of the head. - UBERON:0002376 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon cephalic muscle uberon @@ -809581,7 +810683,7 @@ Albert, JS and WL Fink. 2007. Phylogenetic relationships of fossil neotropical e Portion of cranial nerve II where large fasicles of axons from the optic fiber layer come together prior to leaving the eye. - UBERON:0001783 + ZFA:0001625 optic nerve heads uberon @@ -810276,7 +811378,7 @@ Albert, JS and WL Fink. 2007. Phylogenetic relationships of fossil neotropical e This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon - UBERON:0008248 + pyloric appendage uberon UBERON:2002253 @@ -810778,7 +811880,7 @@ Albert, JS and WL Fink. 2007. Phylogenetic relationships of fossil neotropical e Fin that is an unpaired fin located in the sagittal plane of the organism. - VSAO:0000162 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon nageoire impaire périssoptérygie @@ -811088,7 +812190,7 @@ Albert, JS and WL Fink. 2007. Phylogenetic relationships of fossil neotropical e Clear ocular fluid in the anterior segment of the eye. It is produced primarily by dorsal ciliary epithelial cells. - UBERON:0001796 + ZFA:0005564 uberon UBERON:2002288 @@ -811108,7 +812210,7 @@ Albert, JS and WL Fink. 2007. Phylogenetic relationships of fossil neotropical e Multi-tissue structure that composes the opaque fibrous outer layer of the eye. - UBERON:0001773 + uberon UBERON:2002289 obsolete sclera @@ -811127,7 +812229,7 @@ Albert, JS and WL Fink. 2007. Phylogenetic relationships of fossil neotropical e Portion of organism substance that is a gelatinous extracellular matrix structure that fills the vitreous cavity of the eye. - UBERON:0001797 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon ZFA:0005561 uberon @@ -813953,7 +815055,7 @@ Albert, JS and WL Fink. 2007. Phylogenetic relationships of fossil neotropical e Skeletal tissue that is hypermineralized and aprismatic and deposited by a combination of ameloblasts and odontoblasts that are excluded from the matrix. Enameloid develops from pre-enameloid tissue. - UBERON:0011692 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:2005142 @@ -815899,7 +817001,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Kolmer-Agduhr neurons are ciliated GABAergic neurons that contact the central canal of the spinal cord and have ipsilateral ascending axons. - CL:0005007 + ZFA:0005240 KA cell Kolmer-Agduhr cell @@ -815932,7 +817034,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - CL:0000550 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon ZFA:0005241 intermediate erythroblast @@ -815994,7 +817096,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - CL:0005014 + ZFA:0005244 uberon UBERON:2005244 @@ -816158,8 +817260,8 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon - UBERON:0016631 - ZFA:0005608 + + uberon UBERON:2005255 obsolete frontal-parietal joint @@ -818217,7 +819319,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol https://github.com/obophenotype/uberon/issues/3161 - UBERON:0013764 + uberon UBERON:2005411 Obsoleted as it is redundant with 'common crus of semircular duct'. @@ -818589,7 +819691,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Part of cranial nerve X. - UBERON:0011213 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon ZFA:0007011 rX @@ -819734,7 +820836,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0005362 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon ZFA:0007067 gX @@ -823048,7 +824150,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Undifferentiated cell that is produced by early cleavages of the fertilized egg (zygote). - UBERON:2000093 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3010282 uberon @@ -823203,7 +824305,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:3000381 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3000061 @@ -823496,7 +824598,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0002384 + uberon UBERON:3000099 obsolete connective tissue proper @@ -823759,7 +824861,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Also known as fibrous connective tissue. Forms ligaments and tendons and is characterized by densely packed collagen fibers that have great tensile strength. - UBERON:0011823 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3000121 @@ -825529,7 +826631,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Ossified posterior articular portion of Meckel's cartilage. - UBERON:2001805 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3000347 @@ -825765,7 +826867,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Sliver of bone that invest part of or all the posterior aspect of each antorbital plane. - UBERON:0001682 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon neopalatine uberon @@ -825847,7 +826949,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0012073 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon. Logical definition added by cjm. uberon palatine teeth @@ -826207,7 +827309,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Tooth-bearing part of the maxilla. - UBERON:0004527 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon crista dentalis @@ -826240,7 +827342,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Tooth-bearing part of the premaxilla. - UBERON:0034898 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3000397 @@ -826486,7 +827588,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Lingual ledge on the inner surface of the maxilla. - UBERON:0005871 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon lamina horizontalis @@ -826519,7 +827621,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Lingual ledge on the inner surface of the premaxilla. - UBERON:0034900 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3000414 @@ -827075,7 +828177,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:2001626 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon. Modified by cjm: added logical definition uberon premaxillary teeth @@ -827610,7 +828712,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Palatal bones of intramembranous origin that lie anterior to the otic capsules, lateral to the orbits, and medial to the maxillae. - UBERON:0010389 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon pterygoidien @@ -828415,7 +829517,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol The suprangular or surangular is a jaw bone found in most land vertebrates, except mammals. It's usually in the back of the jaw, on the upper edge, and is connected to all other jaw bones: dentary, angular, splenial and articular. It is often a muscle attachment site. - UBERON:0011636 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3000587 @@ -828441,7 +829543,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Median, unpaired bone that can form the dorsal margin of the foramen magnum. - UBERON:0004747 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3010834 uberon @@ -830696,7 +831798,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Ridge on the ventral aspect of the humeral shaft. It serves for the attachment of the mm pectoralis and shoulder musculature used primarily for limb adduction. - UBERON:0002498 + crista ventralis crista ventralis humeri uberon @@ -831371,7 +832473,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Posterior body of the ilium that forms the anterior half of the acetabulum. - UBERON:0010747 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3000775 @@ -833106,7 +834208,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Small eminence on the distal articular head of the radius. - UBERON:3000840 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3000841 @@ -833426,7 +834528,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Dorsal portion of the ilial corpus, located above the acetabulum. - UBERON:4200125 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon dorsal acetabular expansion @@ -833974,7 +835076,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Paired cartilaginous rods that lie within the copulatory organ (or so-called tail) and are attached to the posteroventral part of the pelvic girdle. - UBERON:3010240 + uberon postpubis UBERON:3000885 @@ -834685,7 +835787,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Dorso-lateral portion of the pectoral girdle. - UBERON:0006849 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon pars scapularis @@ -835319,7 +836421,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Paired, anterior element that articulates medially with basibranchial I and posterolaterally with the paired hypohyals. This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon - UBERON:0011614 + uberon UBERON:3000957 obsolete basihyal @@ -835675,7 +836777,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol The largest part of the nasal cavity, containing the olfactory epithelium. - UBERON:3000089 + uberon UBERON:3000992 obsolete principal cavity @@ -835822,7 +836924,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0008904 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3001001 @@ -837224,7 +838326,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Cranial nerve III innervated; dorsal in the rectus group. - UBERON:0006323 + uberon UBERON:3010099 obsolete musculus rectus superior @@ -837261,7 +838363,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Cranial nerve III innervated; ventral in the rectus group. - UBERON:0006322 + uberon UBERON:3010101 obsolete musculus rectus inferior @@ -837384,7 +838486,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Cranial nerve III innervated; medial in the rectus group. - UBERON:0001602 + uberon UBERON:3010113 obsolete musculus rectus medialis @@ -837446,7 +838548,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Cranial nerve III innverated; ventral in the obliquus group. - UBERON:0006320 + uberon UBERON:3010117 obsolete musculus obliquus inferior @@ -837738,7 +838840,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Ventral plate anterior to and confluent with ethmoid plate. - UBERON:0011242 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3010137 @@ -837864,7 +838966,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Plate of cartilage occluding fenestra ovalis. - UBERON:3010728 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3010145 @@ -837889,18 +838991,21 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - - Investing bone in non-teleosts associated with nasolacrimal duct and lying between pars facialis of maxilla and prefrontal and sometimes nasal. + OBSOLETE. Investing bone in non-teleosts associated with nasolacrimal duct and lying between pars facialis of maxilla and prefrontal and sometimes nasal. + https://github.com/obophenotype/uberon/issues/2804 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon ectethmoid UBERON:3010146 - lacrimal + The synonym of this term has been merged into 'lacrimal bone'. + obsolete lacrimal + true - Investing bone in non-teleosts associated with nasolacrimal duct and lying between pars facialis of maxilla and prefrontal and sometimes nasal. + OBSOLETE. Investing bone in non-teleosts associated with nasolacrimal duct and lying between pars facialis of maxilla and prefrontal and sometimes nasal. AAO:EJS @@ -837921,7 +839026,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:3000087 + uberon UBERON:3010156 obsolete middle cavity @@ -837933,7 +839038,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - CL:0000207 + uberon UBERON:3010159 obsolete olfactory receptor cell @@ -837945,7 +839050,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - CL:0000853 + uberon UBERON:3010160 replaced with 'olfactory epithelium support cell' due to axiom (removed) that it was part of olfactory epithelium. @@ -838817,7 +839922,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol An anatomical cluster that is part of the cranium and structurally supports the eye. - UBERON:0001697 + uberon UBERON:3010220 obsolete orbital region @@ -838836,7 +839941,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon - UBERON:0010913 + uberon UBERON:3010224 obsolete vertebral @@ -839078,7 +840183,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - CL:0000017 + UBERON:3010302 uberon UBERON:3010256 @@ -839231,7 +840336,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Cell which has as its part a cytoskeleton that allows for tight cell to cell contact and which has apical-basal cell polarity. - CL:0000066 + uberon UBERON:3010274 obsolete epithelial cell @@ -839394,7 +840499,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Polymorphic cell type that forms cartilage. - CL:0000138 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3010286 @@ -839419,7 +840524,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - CL:0000064 + ciliated cell uberon UBERON:3010287 @@ -839439,7 +840544,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A connective tissue cell that secretes an extracellular matrix rich in collagen and other macromolecules. - CL:0000057 + uberon UBERON:3010288 obsolete fibroblast @@ -839457,7 +840562,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - CL:0000477 + uberon UBERON:3010289 obsolete follicle cell @@ -839469,7 +840574,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - CL:0000039 + uberon germ line cells UBERON:3010290 @@ -839488,7 +840593,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - CL:0000300 + uberon UBERON:3010291 obsolete gamete @@ -839500,7 +840605,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - CL:0000586 + germ cells uberon UBERON:3010292 @@ -839520,7 +840625,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Primitive cell type that is involved in the reproduction of the organism beginning with the sexual differentiation of the gonads at NF stage 52. In males specifically, it migrates from the genital ridge cortical region into the medullary tissue, where it forms spermatogonia. In females it is embedded in the cortical region and multiplies as oogonia. - CL:0000670 + PGC uberon primitive germ cell @@ -839553,7 +840658,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A mature male germ cell that develops from a spermatid. - CL:0000019 + uberon sperm spermatozoa @@ -839585,7 +840690,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - CL:0000023 + uberon UBERON:3010296 obsolete oocyte @@ -839598,7 +840703,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A germ cell that is a primordial oocyte in a female and that develops into secondary oogonia by mitotic division. - CL:0000654 + uberon primary oogonia UBERON:3010297 @@ -839624,7 +840729,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A germ cell that is a primordial spermatocyte in a male and that develops into secondary spermatogonia by mitotic division. - CL:0000656 + uberon primary spermatogonia UBERON:3010298 @@ -839650,7 +840755,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A type of germ cell that results from the mitotic division of a primary oogonium. - CL:0000655 + uberon secondary oogonia UBERON:3010299 @@ -839676,7 +840781,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A type of germ cell that results from the mitotic division of a primary spermatogonium. - CL:0000657 + uberon secondary spermatogonia UBERON:3010300 @@ -839701,7 +840806,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - CL:0000018 + uberon UBERON:3010301 obsolete spermatid @@ -839774,7 +840879,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A large distinctive organelle aggregate comprised of mitochondria found in developing oocytes of many species. From Pepling et al. 2007. - GO:0032019 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon Balbiani body mitochondrial cloud @@ -839801,7 +840906,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - CL:0002090 + uberon UBERON:3010307 obsolete polar body @@ -839814,7 +840919,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A cell of the B cell, T cell, or natural killer cell lineage. - CL:0000542 + uberon UBERON:3010308 obsolete lymphocyte @@ -839833,7 +840938,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A lymphocyte of B lineage with the phenotype CD19-positive and surface immunoglobulin-positive. - CL:0000236 + uberon UBERON:3010309 obsolete B cell @@ -839852,7 +840957,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A lymphocyte that can spontaneously kill a variety of target cells without prior antigenic activation via germline encoded activation receptors and also regulate immune responses via cytokine release and direct contact with other cells. - CL:0000623 + NK cell uberon UBERON:3010310 @@ -839878,7 +840983,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A type of lymphocyte whose defining characteristic is the expression of a T cell receptor complex. - CL:0000084 + uberon UBERON:3010311 obsolete T cell @@ -839897,7 +841002,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol An immature T cell located in the thymus. - CL:0000893 + uberon UBERON:3010312 obsolete thymocyte @@ -839916,7 +841021,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Embryonic (precursor) cell of the myogenic lineage that develops from the mesoderm. - CL:0000056 + uberon UBERON:3010313 obsolete myoblast @@ -839967,7 +841072,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Cell that is the basic unit of nervous tissue, each consisting of a body, an axon, and dendrites, and the purpose of which is to receive, conduct, and transmit impulses in the nervous system. - CL:0000540 + uberon nerve cell UBERON:3010315 @@ -839993,7 +841098,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Cell type that contains a deposition of coloring matter. - CL:0000147 + uberon chromatophore UBERON:3010317 @@ -840019,7 +841124,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A pigment cell derived from the neural crest. The cell contains flat light-reflecting platelets, probably of guanine, in stacks called reflecting platets or iridisomes. The color-generating components produce a silver, gold, or iridescent color. - CL:0000431 + uberon guanophore UBERON:3010318 @@ -840045,7 +841150,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A pigment cell derived from the neural crest. Contains melanin-filled pigment granules, which gives a brown to black appearance. - CL:0000148 + uberon melonophore UBERON:3010319 @@ -840071,7 +841176,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A pigment cell derived from the neural crest. Contains cartenoid pigments in structures called pterinosomes or xanthosomes. This gives an appearance ranging from a golden yellow to orange and red. - CL:0000430 + uberon UBERON:3010320 obsolete xanthophore @@ -840090,7 +841195,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Cell type that is a component of the glomus. - CL:0000653 + uberon UBERON:3010321 obsolete podocyte @@ -840109,7 +841214,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells. - CL:0000034 + uberon UBERON:3010322 obsolete stem cell @@ -840128,7 +841233,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A stem cell from which all cells of the lymphoid and myeloid lineages develop, including blood cells and cells of the immune system. - CL:0000037 + HSC uberon UBERON:3010323 @@ -840155,7 +841260,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Diploid cell produced by the fusion of sperm cell nucleus and egg cell. - CL:0000365 + fertilized egg uberon UBERON:3010324 @@ -840180,7 +841285,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0012284 + uberon animal UBERON:3010325 @@ -840284,7 +841389,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0012285 + uberon UBERON:3010331 obsolete vegetal hemisphere @@ -840332,7 +841437,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0010230 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon eye ball uberon @@ -840358,7 +841463,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0007625 + uberon UBERON:3010350 replaced with pigment epithelium of eye because was previously asserted to be part of a camera-type eye. @@ -841901,7 +843006,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A thin membrane which attaches the testes to the kidneys and supports the efferent ductules from the testes to the kidneys. - UBERON:0011879 + uberon UBERON:3010530 obsolete mesorchium @@ -841920,7 +843025,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Region of the neurohypophysis which secretes neurohypophyseal hormones, regulating water loss and salt balance. - UBERON:0003217 + uberon UBERON:3010538 obsolete pars nervosa @@ -841971,7 +843076,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0002433 + uberon UBERON:3010543 obsolete bilateral pars tuberalis @@ -841984,7 +843089,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A cell of the embryo in the early stage following the blastula, characterized by morphogenetic cell movements, cell differentiation, and the formation of the three germ layers. - CL:0000361 + uberon UBERON:3010552 obsolete gastrula cell @@ -842003,7 +843108,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol An undifferentiated cell produced by early cleavages of the fertilized egg (zygote). - CL:0000353 + uberon UBERON:3010553 obsolete blastoderm cell @@ -842022,7 +843127,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A cell of the outer of the three germ layers of the embryo. - CL:0000221 + uberon ectoderm cell UBERON:3010554 @@ -842048,7 +843153,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A cell of the inner of the three germ layers of the embryo. - CL:0000223 + uberon endoderm cell UBERON:3010555 @@ -842074,7 +843179,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A cell of the middle germ layer of the embryo. - CL:0000222 + uberon mesoblast mesoderm cell @@ -842554,7 +843659,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - CL:0000574 + uberon UBERON:3010593 Note that this class originally had axiom that it was part of the integument. However, the term had no definition and one can use the general erythrophore def from CL. @@ -842673,7 +843778,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0012451 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3010612 @@ -842905,7 +844010,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A transient rod-like structure ventral to the notochord in salamander embryos. Derived from endoderm. - UBERON:0003058 + uberon UBERON:3010625 obsolete embryonic hypochord @@ -842923,7 +844028,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - CL:0000242 + uberon Merkel cells UBERON:3010626 @@ -842943,7 +844048,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A type of mucus and/or fluid secreting cell in larvae. - CL:0000178 + uberon UBERON:3010627 obsolete leydig cells @@ -842962,7 +844067,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Innervates m. rectus superior (m. dorsal rectus). - UBERON:0015162 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3010628 @@ -842987,7 +844092,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0001479 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3010630 uberon @@ -843037,7 +844142,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Innervates m. rectus medialis, m. rectus inferior, m. obliquus inferior. - UBERON:0015161 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3010632 @@ -843082,7 +844187,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A mucous surface cell type known in tadpoles of Xenopus. - CL:0000160 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3010635 @@ -844069,7 +845174,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0008904 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3010705 @@ -844599,7 +845704,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0006720 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3010730 @@ -845875,7 +846980,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:3010201 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3010812 @@ -846378,7 +847483,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0001675 + uberon UBERON:3011045 Obsoleted as gasserian ganglion is an exact synonym to trigeminal ganglion per Wikipedia @@ -846392,7 +847497,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol OBSOLETE Anatomical system that has as its parts the organs concerned with reproduction, especially the external genital organs. - UBERON:0000990 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon genitalia reproductive system @@ -846421,7 +847526,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0002065 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3011081 @@ -846440,7 +847545,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0002364 + tympanic membrane uberon UBERON:3011108 @@ -846517,7 +847622,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0009622 + 2011-04-20T05:22:49Z uberon UBERON:3011122 @@ -846531,7 +847636,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance. - GO:0001503 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon GO:0001503 uberon @@ -846584,7 +847689,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Dermal bone that forms the postero-dorsal part of the opercular series. The opercle articulates with the hyomandibula antero-dorsally and with the subopercle ventrally. The opercle is a paired bone. - UBERON:2000250 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000004 @@ -846610,7 +847715,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0011614 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000005 @@ -846631,7 +847736,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Endochondral bone that is median and is the anterior-most bone of the ventral hyoid arch. - UBERON:0011618 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000007 @@ -846658,7 +847763,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Cell of the notochord, often vacuolated or resembles a chondrocyte. - CL:0007005 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000009 @@ -846683,7 +847788,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - CL:0007006 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000010 @@ -846703,7 +847808,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Cell that has the potential to form a skeletal cell type (e.g., cells in periosteum, cells in marrow) and produce extracellular matrix (often mineralized) and skeletal tissue (often mineralized). - CL:0007001 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000012 @@ -846774,7 +847879,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Pharyngeal arch cartilage that is median and is the anterior-most cartilage of the ventral hyoid arch. - UBERON:0011615 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000014 @@ -846818,7 +847923,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0011153 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000018 @@ -846839,7 +847944,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Epithelial cell that is large, vacuolated, and part of the notochord. - CL:0007008 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000019 @@ -846891,7 +847996,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus. [GOC:mtg_sensu, ISBN:0198547684]. - GO:0005578 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000021 @@ -846920,7 +848025,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Combination of protein fibers, ground substance and tissue fluid; typically has embedded cells. - GO:0031012 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon ECM uberon @@ -846953,7 +848058,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Small membrane bone homologous with a cartilage bone in more basal fishes (Patterson, 1977). Situated between the exoccipital and the pterotic at point of attachment of short ligament that originates on the ventral arm of the posttemporal. - UBERON:2000474 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000024 @@ -847056,7 +848161,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Skeletogenic cell that has the potential to develop into an ameloblast. - CL:0007000 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000038 @@ -847082,7 +848187,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Skeletogenic cell that is derived from the notochordal mesoderm and produces notochordal tissue (and cartilage tissue in some taxa). - CL:0007008 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000039 @@ -847108,7 +848213,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Skeletogenic cell that has the potential to form an odontoblast, deposits predentine, and arises from a neural crest cell. - CL:0007003 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000041 @@ -847134,7 +848239,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Skeletogenic cell that has the potential to develop into a cementoblast. - CL:0007002 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000043 @@ -847160,7 +848265,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Skeletogenic cell that has the potential to develop into a chondroblast; and arises from neural crest, meseosdermal and notochordal and connective tissue cells. - CL:0007009 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000044 @@ -847186,7 +848291,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Skeletogenic cell that has the potential to transform into an osteoblast, and develops from neural crest or mesodermal cells. - CL:0007010 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000045 @@ -847670,7 +848775,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Odontoblast that non-terminally differentiated, located in the odontogenic papilla and dentine tissue, and transforms from a odontoblast cell. - CL:00007012 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000095 @@ -847696,7 +848801,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Odontoblast that is terminally differentiated and derived from an odontogenic papilla and associated with dentine. - CL:00007013 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000096 @@ -848017,7 +849122,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Osteoblast that is terminally differentiated, located adjacent to acellular or cellular bone tissue within periosteum, and is capable of mineralizing the matrix. - CL:0001039 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000116 @@ -848043,7 +849148,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Osteoblast that is non-terminally differentiated and located in cellular bone tissue or under the periosteum in acellular bone. - CL:0001040 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000117 @@ -848295,7 +849400,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Ossification that does not require the replacement of pre-existing tissues, most often a cartilaginous model. - GO:0036072 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000136 @@ -848346,7 +849451,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Ossification that requires the replacement of a pre-existing tissue prior to bone tissue formation. - GO:0036075 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon indirect ossification uberon @@ -848379,7 +849484,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Direct ossification that occurs within mesenchyme with the formation of an osteogenic condensation not associated with a perichondrium. - GO:0001957 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon GO:0001957 uberon @@ -848406,7 +849511,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Direct ossification in which transformation of the pre-existing tissue occurs without dedifferentiation of cells or reinitiation of cell division; direct transformation of a non-bone tissue into a bone tissue. - GO:0036074 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon metaplasia uberon @@ -848439,7 +849544,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Replacement ossification wherein bone tissue replaces cartilage. - GO:0001958 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000143 @@ -848465,7 +849570,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Intramembranous ossification on the surface of a cartilage element as the perichondrium becomes a periosteum, without replacement of cartilage. - GO:0036073 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000144 @@ -849601,7 +850706,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol OBSOLETE Claws on the pes. - UBERON:0009567 + uberon UBERON:4100008 Term is redundant with 'nail of pedal digit' (UBERON:0009567). @@ -850074,7 +851179,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Anteriorly projecting processes allowing de facto contact between consecutive vertebrae (some soft tissues are also present) via articular facets. - UBERON:0001079 + uberon UBERON:4100120 obsolete prezygapophyses @@ -853079,7 +854184,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol OBSOLETE Eminence or swelling on anatomical surface. - UBERON:0005813 + uberon UBERON:4200132 Term is redundant with "tubercle" (UBERON:0005813). @@ -853910,7 +855015,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0009565 + uberon UBERON:4200179 Term is redundant with 'nail of manual digit' (UBERON:0009565). @@ -855276,7 +856381,7 @@ formulas. Modified from Cooper and Dawson 2009. A fossa that is a depression in the proximal end of the maxilla involved in articulation with the palatine [Baldwin, CC and Johnson GD. 1996. Interrelationships of Aulopiformes. Pages 355-404 in MLJ Stiassny, LR Parenti, and DG Johnson, (eds.), Interrelationships of fishes. Academic Press, San Diego, CA.]. - UBERON:3000652 + uberon UBERON:4300001 obsolete maxillary saddle @@ -856806,7 +857911,7 @@ formulas. Modified from Cooper and Dawson 2009. Posteriorly projecting processes allowing de facto contact between consecutive vertebrae (some soft tissues are also present) via articular facets. - UBERON:0001080 + uberon UBERON:4300122 obsolete postzygapophysis @@ -857847,7 +858952,7 @@ formulas. Modified from Cooper and Dawson 2009. - UBERON:0000167 + uberon UBERON:4300187 obsolete buccopharyngeal complex @@ -858204,7 +859309,7 @@ formulas. Modified from Cooper and Dawson 2009. Structures that communicate with the main olfactory chamber and may be located posterior, ventral, or dorsal to it [De Pinna, 1996]. - UBERON:4300152 + uberon UBERON:4300204 Duplicate term. @@ -859949,7 +861054,7 @@ formulas. Modified from Cooper and Dawson 2009. - UBERON:1500006 + uberon UBERON:4400009 Was already defined @@ -864603,7 +865708,7 @@ formulas. Modified from Cooper and Dawson 2009. - FBbt:00000000 + uberon UBERON:6000000 obsolete embryonic germ layer derivative @@ -866186,7 +867291,7 @@ formulas. Modified from Cooper and Dawson 2009. https://github.com/obophenotype/uberon/issues/3051 - UBERON:6005380 + uberon UBERON:60005380 Obsoleted because the ID was minted incorrectly. @@ -868145,7 +869250,7 @@ formulas. Modified from Cooper and Dawson 2009. https://github.com/obophenotype/uberon/issues/2867 - CL:0000373 + uberon UBERON:6001789 Obsoleted as this represents a cell type and therefore belongs to CL. @@ -868190,7 +869295,7 @@ formulas. Modified from Cooper and Dawson 2009. https://github.com/obophenotype/uberon/issues/2867 - UBERON:6001790 + uberon UBERON:6001791 Obsoleted as this level of precision is deemed unnecessary in Uberon. Consider using either 'insect histoblast nest' (UBERON:6001790) or a more precise term from a taxon-specific ontology such as FBbt. @@ -868204,7 +869309,7 @@ formulas. Modified from Cooper and Dawson 2009. https://github.com/obophenotype/uberon/issues/2867 - UBERON:6001790 + uberon UBERON:6001792 Obsoleted as this level of precision is deemed unnecessary in Uberon. Consider using either 'insect histoblast nest' (UBERON:6001790) or a more precise term from a taxon-specific ontology such as FBbt. @@ -868218,7 +869323,7 @@ formulas. Modified from Cooper and Dawson 2009. https://github.com/obophenotype/uberon/issues/2867 - UBERON:6001790 + uberon UBERON:6001809 Obsoleted as this level of precision is deemed unnecessary in Uberon. Consider using either 'insect histoblast nest' (UBERON:6001790) or a more precise term from a taxon-specific ontology such as FBbt. @@ -869510,7 +870615,7 @@ formulas. Modified from Cooper and Dawson 2009. https://github.com/obophenotype/uberon/issues/2972 - UBERON:6005514 + uberon UBERON:6004203 Obsoleted as this level of precision is deemed unnecessary for Uberon. @@ -869997,17 +871102,10 @@ formulas. Modified from Cooper and Dawson 2009. - FBbt:00004579 uberon UBERON:6004579 insect dorsal mesothorax - - - - FBbt:00004579 - - @@ -870562,12 +871660,6 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:6005037 insect tracheal primordium - - - - Primordium of a single tracheal metamere of the embryonic/larval tracheal system from its appearance as a placode during stage 11 to the completion of fusion with adjacent tracheal metameres in stage 15/16. There are 10 pairs of tracheal primordia - one pair in each segment from T2 to A8. Each tracheal primordium originates as a slight depression in the lateral ectoderm during stage 10 known as a tracheal placode. During stage 11, these placodes invaginate to form tracheal pits that elongate and branch. These pits close over during stage 13. Fusion of tracheal primordia begins at stage 14 with fusion of the dorsal trunk primordia and is complete by early stage 16. - FlyBase:FBrf0089570 - @@ -870580,6 +871672,12 @@ formulas. Modified from Cooper and Dawson 2009. P2 TrachP FBC:DOS + + + + Primordium of a single tracheal metamere of the embryonic/larval tracheal system from its appearance as a placode during stage 11 to the completion of fusion with adjacent tracheal metameres in stage 15/16. There are 10 pairs of tracheal primordia - one pair in each segment from T2 to A8. Each tracheal primordium originates as a slight depression in the lateral ectoderm during stage 10 known as a tracheal placode. During stage 11, these placodes invaginate to form tracheal pits that elongate and branch. These pits close over during stage 13. Fusion of tracheal primordia begins at stage 14 with fusion of the dorsal trunk primordia and is complete by early stage 16. + FlyBase:FBrf0089570 + @@ -870657,8 +871755,8 @@ formulas. Modified from Cooper and Dawson 2009. The visceral musculature comprises circular and longitudinal fibers which surround the entire intestinal tract, with the exception of the recurrent layer of the proventriculus. The circular fibers derive from a bilaterally symmetrical band of mesodermal cells extending continuously throughout most of the germ band. The longitudinal fibers derive from clusters of mesodermal cells which appear during stage 12 at the posterior end of the embryo and migrate anteriorly. - CL:0008007 - FBbt:00005070 + + uberon UBERON:6005070 obsolete visceral muscle @@ -870738,21 +871836,21 @@ formulas. Modified from Cooper and Dawson 2009. - + FBbt:00005168 sensillum uberon UBERON:6005168 insect external sensory organ - + - + https://github.com/obophenotype/uberon/issues/2050 @@ -870833,14 +871931,14 @@ formulas. Modified from Cooper and Dawson 2009. - + Section of the insect foregut anterior to the esophagus. FBbt:00005380 uberon UBERON:6005380 insect pharynx - + @@ -870853,7 +871951,7 @@ formulas. Modified from Cooper and Dawson 2009. - + FBbt @@ -870939,7 +872037,7 @@ formulas. Modified from Cooper and Dawson 2009. https://github.com/obophenotype/uberon/issues/2972 - UBERON:0007688 + uberon UBERON:6005413 Obsoleted as this level of precision is deemed unnecessary for Uberon. @@ -870989,7 +872087,7 @@ formulas. Modified from Cooper and Dawson 2009. https://github.com/obophenotype/uberon/issues/2972 - UBERON:6005427 + uberon UBERON:6005428 Obsoleted as this level of precision is deemed unnecessary for Uberon. @@ -871003,7 +872101,7 @@ formulas. Modified from Cooper and Dawson 2009. https://github.com/obophenotype/uberon/issues/2972 - UBERON:6001059 + uberon UBERON:6005434 Obsoleted as this level of precision is deemed unnecessary for Uberon. @@ -871017,7 +872115,7 @@ formulas. Modified from Cooper and Dawson 2009. https://github.com/obophenotype/uberon/issues/2972 - UBERON:6000128 + uberon UBERON:6005436 Obsoleted as this level of precision is deemed unnecessary for Uberon. @@ -871031,7 +872129,7 @@ formulas. Modified from Cooper and Dawson 2009. https://github.com/obophenotype/uberon/issues/2972 - UBERON:6005538 + uberon UBERON:6005439 Obsoleted as this level of precision is deemed unnecessary for Uberon. @@ -872281,7 +873379,7 @@ formulas. Modified from Cooper and Dawson 2009. - FBbt:00007435 + uberon endocrine organ UBERON:6007435 @@ -872407,7 +873505,7 @@ formulas. Modified from Cooper and Dawson 2009. - + @@ -872420,14 +873518,14 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:6026000 insect trunk mesoderm derivative - + - + https://github.com/obophenotype/uberon/issues/2050 @@ -872610,7 +873708,7 @@ formulas. Modified from Cooper and Dawson 2009. - UBERON:0011676 + uberon UBERON:6057001 Obsoleted as it is redundant with 'subdivision of organism along main body axis', which is not restricted to insects. @@ -872769,16 +873867,12 @@ formulas. Modified from Cooper and Dawson 2009. OBSOLETE The distal-most point of the medial condyle of a femur. - UBERON:0009984 + uberon UBERON:7500033 too specific of a term obsolete distal-most point of medial condyle of femur true - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Knee_L.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Knee_R.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Knee_L.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Knee_R.glb @@ -872793,7 +873887,7 @@ formulas. Modified from Cooper and Dawson 2009. OBSOLETE The distal-most point of the trochlea of a humerus. - UBERON:0000144 + uberon UBERON:7500034 too specific of a term. @@ -872813,7 +873907,7 @@ formulas. Modified from Cooper and Dawson 2009. OBSOLETE Outermost point of a tail. - UBERON:0010162 + uberon UBERON:7500035 term already exists @@ -872833,7 +873927,7 @@ formulas. Modified from Cooper and Dawson 2009. OBSOLETE An anatomical line along a tail that extends from the first caudal vertebra to the last cuadal vertebra. - OBA:VT0002758 + uberon UBERON:7500036 No longer part of the pattern design for lengths of lines. Can be found in OBA as tail length (http://purl.obolibrary.org/obo/OBA_VT0002758). @@ -872853,7 +873947,7 @@ formulas. Modified from Cooper and Dawson 2009. OBSOLETE An anatomical line of a ear that connects the helix of the outer ear to the intertragus incisure of an ear. - FOVT:0000005 + uberon UBERON:7500037 No longer part of the pattern design for lengths of lines. Can be found in FOVT as ear length to notch (FOVT:0000005). @@ -872873,7 +873967,7 @@ formulas. Modified from Cooper and Dawson 2009. OBSOLETE An anatomical line of a hindfoot that connects the distal-most part of the longest nail to the posterior-most part of a foot. - FOVT:0000003 + uberon UBERON:7500038 No longer part of the pattern design for lengths of lines. Can be found in FOVT as pes length with nail (FOVT:0000003). @@ -872893,7 +873987,7 @@ formulas. Modified from Cooper and Dawson 2009. OBSOLETE The posterior-most point of a foot. - UBERON:0008338 + uberon UBERON:7500039 already exists (sole of foot) @@ -872913,7 +874007,7 @@ formulas. Modified from Cooper and Dawson 2009. OBSOLETE The distal-most point of a cutaneous appendage. - UBERON:0001705 + uberon UBERON:7500040 no longer needed @@ -872933,7 +874027,7 @@ formulas. Modified from Cooper and Dawson 2009. The distal-most point of a digit. - UBERON:0009551 + uberon UBERON:7500041 duplicate with UBERON:0009551 'distal segment of digit'. @@ -872953,7 +874047,7 @@ formulas. Modified from Cooper and Dawson 2009. OBSOLETE An anatomical line of a hindfoot that connects the end of the longest digit to the posterior-most part of a foot. - FOVT:0000004 + uberon UBERON:7500042 No longer part of the pattern design for lengths of lines. Can be found in FOVT as pes length without nail (FOVT:0000004). @@ -872973,7 +874067,7 @@ formulas. Modified from Cooper and Dawson 2009. OBSOLETE An anatomical line of a body that connects the tip of the nose to the posterior-most part of the sacrum. - FOVT:0000002 + uberon UBERON:7500043 No longer part of the pattern design for lengths of lines. Can be found in FOVT as body length without tail (FOVT:0000002). @@ -872993,7 +874087,7 @@ formulas. Modified from Cooper and Dawson 2009. OBSOLETE An anatomical line of a body that connects the tip of the nose to the posterior-most part of a tail. - FOVT:0000001 + uberon UBERON:7500044 No longer part of the pattern design for lengths of lines. Can be found in FOVT as body length with tail (FOVT:0000001). @@ -873013,7 +874107,7 @@ formulas. Modified from Cooper and Dawson 2009. OBSOLETE An anatomical line of a femur that connects the medial condyle to the greater trochanter. - FOVT:0000006 + uberon UBERON:7500045 No longer part of the pattern design for lengths of lines. Can be found in FOVT as femur length from greater trochanter to medial condyle (FOVT:0000006). @@ -873177,7 +874271,7 @@ formulas. Modified from Cooper and Dawson 2009. OBSOLETE An anatomical line of a femur that connects the medial condyle to the head of a femur. - FOVT:0000007 + uberon UBERON:7500050 No longer part of the pattern design for lengths of lines. Can be found in FOVT as femur length from caput to medial condyle (FOVT:0000007). @@ -873197,7 +874291,7 @@ formulas. Modified from Cooper and Dawson 2009. OBSOLETE An anatomical line of a humerus that connects the trochlea to the proximal head. - FOVT:0000008 + uberon UBERON:7500051 No longer part of the pattern design for lengths of lines. Can be found in FOVT as humerus length from trochlea to caput (FOVT:0000008). @@ -873454,7 +874548,7 @@ formulas. Modified from Cooper and Dawson 2009. OBSOLETE An anatomical line of a humerus that connects the trochlea to the ventral tubercle. - FOVT:0000009 + uberon UBERON:7500060 No longer part of the pattern design for lengths of lines. Can be found in FOVT as humerus length from trochlea to ventral tubercle (FOVT:0000009). @@ -873921,7 +875015,7 @@ formulas. Modified from Cooper and Dawson 2009. A trochlea on the distal end of a femur that interacts with the patella. - UBERON:4200096 + 2021-06-02T00:19:07Z uberon UBERON:7500077 @@ -874162,7 +875256,7 @@ formulas. Modified from Cooper and Dawson 2009. - UBERON:7500080 + 2021-08-03T21:28:12Z uberon UBERON:7500088 @@ -875419,8 +876513,8 @@ formulas. Modified from Cooper and Dawson 2009. - - + + A collection of Purkinje fibers that receives signals from the right and left bundle branches and innervates the ventricular cardiac muscle. The Purkinje fiber network creates synchronized contractions of the heart ventricles. Purkinje fibre network @@ -875428,11 +876522,11 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:8000009 Purkinje fiber network - + - + @@ -875447,7 +876541,7 @@ formulas. Modified from Cooper and Dawson 2009. - + https://github.com/obophenotype/uberon/issues/1785 https://orcid.org/0000-0001-5208-3432 https://orcid.org/0000-0002-9791-0064 @@ -875455,7 +876549,7 @@ formulas. Modified from Cooper and Dawson 2009. - + https://github.com/obophenotype/uberon/issues/1785 https://orcid.org/0000-0001-5208-3432 https://orcid.org/0000-0002-9791-0064 @@ -875917,7 +877011,7 @@ formulas. Modified from Cooper and Dawson 2009. - + The region of the hepatic acinus that is closest to the arterial blood supply and has the highest oxygen concentration. Zone 1 is located in the periportal region of the liver lobule, closest to the portal triad. Hepatocytes in this region are primarily involved in oxidative energy metabolism. @@ -875927,14 +877021,14 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:8400001 hepatic acinus zone 1 - + - + PMID:28126520 @@ -875962,7 +877056,7 @@ formulas. Modified from Cooper and Dawson 2009. - + The region of the hepatic acinus immediately surrounding the central veins. This region has the lowest oxygen concentration in the acinus. Zone 3 is located in the centrilobular region of the liver lobule, closest to the central vein. Hepatocytes in this region are the primary location for the biotransformation of drugs. @@ -875974,14 +877068,14 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:8400002 hepatic acinus zone 3 - + - + PMID:28126520 @@ -876021,7 +877115,7 @@ formulas. Modified from Cooper and Dawson 2009. - + @@ -876043,14 +877137,14 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:8400003 hepatic acinus zone 2 - + - + PMID:28126520 @@ -876114,7 +877208,7 @@ formulas. Modified from Cooper and Dawson 2009. - + @@ -876130,14 +877224,14 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:8400006 liver lobule periportal region - + - + PMID:28126520 @@ -876165,7 +877259,7 @@ formulas. Modified from Cooper and Dawson 2009. - + @@ -876181,14 +877275,14 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:8400007 liver lobule centrilobular region - + - + PMID:28126520 @@ -876216,7 +877310,7 @@ formulas. Modified from Cooper and Dawson 2009. - + @@ -876238,14 +877332,14 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:8400008 liver lobule midzonal region - + - + PMID:28126520 @@ -877515,7 +878609,8 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:8410025 transition zone of prostate - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb @@ -877554,7 +878649,8 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:8410026 peripheral zone of prostate - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb @@ -877592,7 +878688,8 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:8410027 central zone of prostate - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb + https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb @@ -878850,9 +879947,11 @@ formulas. Modified from Cooper and Dawson 2009. Submucous nerve plexus that is located in the colon. + uberon UBERON:8410059 + submucous nerve plexus of colon @@ -878996,9 +880095,11 @@ formulas. Modified from Cooper and Dawson 2009. Myenteric nerve plexus that is part of the small intestine. + uberon UBERON:8410063 + myenteric nerve plexus of small intestine @@ -881173,7 +882274,6 @@ formulas. Modified from Cooper and Dawson 2009. Lateral tuberal nucleus is listed as both an exact synonym and related synonym as the term has been used in both ways. See https://github.com/obophenotype/uberon/issues/2439 for more details. No homology links has been made as this is unclear from the literature. lateral tuberal nucleus (sensu Rodentia) - DMBA:16271 MBA:614 lateral tuberal nucleus (sensu Rodentia) uberon @@ -888814,12 +889914,14 @@ formulas. Modified from Cooper and Dawson 2009. A tree-like structure formed by chorionic villi that sprouts from the chorionic plate in the placental disc. The arborous shape of the chorionic villous tree provides maximal contact area with maternal blood in the intervillous space. + 2023-12-12T11:57:24Z villous tree placental villous tree uberon UBERON:8600026 + chorionic villous tree @@ -888860,11 +889962,13 @@ formulas. Modified from Cooper and Dawson 2009. A chorionic villus that provides structural support to the villous tree. A chorionic stem villus is characterized by a condensed fibrous stroma in which fetal arteries, veins, arterioles, and venules are embedded. It represents a distributing framework for fetal chorionic circulation, supplying the floating villi. It can exhibit a diameter ranging from approximately 3000 μm (trunci near the chorionic plate) to 80 μm (smallest ramuli chorii). + 2023-12-12T13:00:59Z placental stem villus uberon UBERON:8600027 + chorionic stem villus @@ -888888,11 +889992,13 @@ formulas. Modified from Cooper and Dawson 2009. The first generation of a tertiary villus that is derived from a syncytial sprout by the invasion of the mesenchyme, in which blood vessels differentiate through vasculogenesis, and gradually transforms into a new immature intermediate villus. A chorionic mesenchymal villus has a thick trophoblastic covering, and cytotrophoblast cells are interposed between syncytium and the trophoblastic basal lamina over 50–100% of the surface. The stroma is characterized by loosely arranged collagen fibers that enmesh mesenchymal and some villous macrophages. The fetal capillaries are poorly developed. + 2023-12-12T13:38:12Z mesenchymal villus uberon UBERON:8600028 + chorionic mesenchymal villus @@ -888927,11 +890033,13 @@ formulas. Modified from Cooper and Dawson 2009. A bulbous, immature chorionic villus that is formed of loose connective tissue with few fetal vessels. A chorionic immature intermediate villus develops from a chorionic mesenchymal villus, and is the forerunner of a chorionic stem villus. + 2023-12-12T13:41:05Z uberon immature intermediate villus UBERON:8600029 + chorionic immature intermediate villus @@ -888957,11 +890065,13 @@ formulas. Modified from Cooper and Dawson 2009. The most distal part of a chorionic villus. A chorionic terminal villus is a grape-like structure characterized by a high degree of capillarization and highly dilated sinusoids. A terminal villus has less stroma and a discontinuous cytotrophoblast layer, and contains 4–6 fetal capillaries per cross section. It exhibits a diameter ranging from 40 to about 80 μm. + 2023-12-12T13:41:16Z terminal villus uberon UBERON:8600030 + chorionic terminal villus @@ -888991,11 +890101,13 @@ formulas. Modified from Cooper and Dawson 2009. A slender branch of a chorionic stem villus. A chorionic mature intermediate villus lacks fetal arterioles and venules in the stroma, which is composed of slender fetal capillaries embedded into a loose connective tissue that is rich in cells but poor in fibers. It exhibits a diameter ranging from 60 to about 100 μm. + 2023-12-12T13:41:28Z mature intermediate villus uberon UBERON:8600031 + chorionic mature intermediate villus @@ -889207,6 +890319,7 @@ formulas. Modified from Cooper and Dawson 2009. A section of the long descending thin limb of the loop of Henle that is part of the outer medulla of the kidney. + 2024-01-15T13:28:03Z @@ -889214,6 +890327,7 @@ formulas. Modified from Cooper and Dawson 2009. uberon DTL2 UBERON:8600036 + kidney loop of Henle long descending thin limb outer medulla @@ -889255,6 +890369,7 @@ formulas. Modified from Cooper and Dawson 2009. A section of the long descending thin limb of the loop of Henle that is part of the inner medulla of the kidney. + 2024-01-15T13:32:25Z @@ -889262,6 +890377,7 @@ formulas. Modified from Cooper and Dawson 2009. uberon DTL3 UBERON:8600037 + kidney loop of Henle long descending thin limb inner medulla @@ -889297,11 +890413,13 @@ formulas. Modified from Cooper and Dawson 2009. A disc-shaped structure that is part of the placenta. A placental disc supports fetal development through the exchange of nutrients between maternal and fetal bloodstreams. The placental disc is structured to keep the blood streams separate, while maximizing surface area for the transport of nutrients between them, to maintain an immunological barrier. + 2024-01-16T17:50:20Z placental disk uberon UBERON:8600038 + placental disc @@ -889343,10 +890461,12 @@ formulas. Modified from Cooper and Dawson 2009. A mesenchyme that is part of a chorionic villus. + 2024-01-16T18:13:12Z uberon UBERON:8600039 + chorionic villous mesenchyme @@ -889380,11 +890500,13 @@ formulas. Modified from Cooper and Dawson 2009. A blood vessel that is part of a chorionic stem villus. + 2024-01-16T18:14:32Z stem villous vessel uberon UBERON:8600040 + chorionic stem villous blood vessel @@ -889425,11 +890547,13 @@ formulas. Modified from Cooper and Dawson 2009. A capillary that is part of a chorionic terminal villus. This capillary is generally narrow, but displays sinusoidal dilations along its length, often at the points of acute bends. These dilations bring the capillary endothelium into close contact with the overlying syncytiotrophoblast to form a vasculosyncytial membrane. + 2024-01-16T18:16:47Z terminal villous capillary uberon UBERON:8600041 + chorionic terminal villous capillary @@ -889470,10 +890594,12 @@ formulas. Modified from Cooper and Dawson 2009. A lymphatic vessel that is part of an endometrium. + 2024-01-16T18:18:36Z uberon UBERON:8600042 + endometrial lymphatic vessel @@ -889853,14 +890979,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + hagfish have median nostril - + @@ -889874,14 +891000,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:25312359 - + @@ -889895,14 +891021,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + midface division only makes sense for gnathostomes - + @@ -889916,14 +891042,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:16417468 - + @@ -889937,14 +891063,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:16417468 - + @@ -890048,14 +891174,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + ZFS - + @@ -890084,14 +891210,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -890105,14 +891231,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -890171,15 +891297,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + female dbpedia-modified - + @@ -890193,15 +891319,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + male dbpedia-modified - + @@ -890215,14 +891341,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:15843440 - + @@ -890251,14 +891377,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + vertebrates - + @@ -890452,14 +891578,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipedia - + @@ -890473,14 +891599,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -890494,14 +891620,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -890515,14 +891641,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -890536,14 +891662,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -890557,14 +891683,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -890578,14 +891704,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA-abduced-lr - + @@ -890599,14 +891725,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + definitional - + @@ -890620,14 +891746,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + myelin not present in all taxa that have a commissure - + @@ -890641,14 +891767,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + https://github.com/obophenotype/uberon/wiki/The-neural-crest - + @@ -890707,14 +891833,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + only in species that have a stomach - + @@ -890758,14 +891884,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipedia:Vitelline_vein - + @@ -890869,14 +891995,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -890930,14 +892056,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -890951,14 +892077,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:16313389 - + @@ -890972,15 +892098,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Mammals ISBN:0073040584-table13.1 - + @@ -890994,15 +892120,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Mammals ISBN:0073040584-table13.1 - + @@ -891016,15 +892142,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Urodele ISBN:0073040584-table13.1 - + @@ -891038,15 +892164,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Urodele ISBN:0073040584-table13.1 - + @@ -891060,16 +892186,16 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Anurans ISBN:0073040584-table13.1 XAO - + @@ -891083,15 +892209,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Anurans ISBN:0073040584-table13.1 - + @@ -891105,15 +892231,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Aves ISBN:0073040584-table13.1 - + @@ -891127,15 +892253,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Aves ISBN:0073040584-table13.1 - + @@ -891149,15 +892275,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + pouches 3 and 4 in chick PMID:16313389 - + @@ -891171,15 +892297,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + pouches 3 and 4 in human PMID:16313389 - + @@ -891193,14 +892319,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipedia:Vitelline_vein - + @@ -891214,15 +892340,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + requires review EHDAA2 - + @@ -891236,15 +892362,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + requires review EHDAA2 - + @@ -891258,15 +892384,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + may be present in other parts in other species FMA - + @@ -891340,15 +892466,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Lateral margin of coccyx and related border of sacrum dbpedia - + @@ -891362,15 +892488,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Lateral margin of coccyx and related border of sacrum dbpedia - + @@ -891384,14 +892510,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + WP - + @@ -891420,14 +892546,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -891441,15 +892567,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + proximally Wikipedia - + @@ -891463,15 +892589,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + proximally Wikipedia - + @@ -891485,15 +892611,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + radially Wikipedia - + @@ -891507,15 +892633,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + ulnar side Wikipedia - + @@ -891529,15 +892655,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + distally Wikipedia - + @@ -891551,15 +892677,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + distally Wikipedia - + @@ -891573,15 +892699,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + distally Wikipedia - + @@ -891717,14 +892843,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -891738,15 +892864,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + right arch 4 in human embryology.ch - + @@ -891760,14 +892886,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -891781,14 +892907,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipedia:Vitelline_vein - + @@ -891802,14 +892928,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipedia - + @@ -891823,14 +892949,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:22179203 - + @@ -891859,14 +892985,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + ISBN:080184780X - + @@ -891880,14 +893006,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -891901,14 +893027,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -891922,14 +893048,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -891943,14 +893069,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -891964,14 +893090,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -891985,14 +893111,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -892006,14 +893132,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -892027,14 +893153,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -892048,14 +893174,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -892084,14 +893210,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + WP - + @@ -892105,14 +893231,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + ISBN:0073040584 - + @@ -892126,14 +893252,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + ISBN:0073040584 - + @@ -892147,14 +893273,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + http://www.avdc.org/Nomenclature.pdf - + @@ -892168,14 +893294,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA-implied - + @@ -892216,14 +893342,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipedia - + @@ -892237,14 +893363,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipedia - + @@ -892258,14 +893384,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + MP - + @@ -892279,14 +893405,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + MP - + @@ -892317,14 +893443,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMC4038951 - + @@ -892338,14 +893464,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + ISBN:080184780X - + @@ -892359,14 +893485,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -892380,14 +893506,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -892431,15 +893557,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + teleost NCBIBook:NBK53175 - + @@ -892453,14 +893579,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Euarchontoglires - + @@ -892489,14 +893615,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + evaginated - + @@ -892510,14 +893636,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + evaginated - + @@ -892561,14 +893687,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + https://github.com/obophenotype/uberon/wiki/The-neural-crest - + @@ -892582,14 +893708,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:16417468 - + @@ -892603,14 +893729,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -892624,14 +893750,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -892645,14 +893771,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -892683,16 +893809,16 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Amphibia AAO Wikipedia - + @@ -892706,14 +893832,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipedia - + @@ -892727,15 +893853,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + UBERON:0011870 or UBERON:0011869 Wikipedia - + @@ -892749,15 +893875,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + hamate Wikipedia - + @@ -892771,14 +893897,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + cjm - + @@ -892809,14 +893935,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + NIFSTD - + @@ -892845,14 +893971,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + MP - + @@ -892866,14 +893992,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + MP - + @@ -892887,14 +894013,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + XAO - + @@ -892908,15 +894034,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + ISBN:0073040584 Wikipedia - + @@ -892960,14 +894086,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + EHDAA2 - + @@ -893013,14 +894139,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:16496288 - + @@ -893034,14 +894160,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -893055,14 +894181,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + MP - + @@ -893076,14 +894202,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + JB - + @@ -893097,14 +894223,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:16417468 - + @@ -893118,14 +894244,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:16417468 - + @@ -893139,14 +894265,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -893160,15 +894286,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + AAO https://github.com/geneontology/go-ontology/issues/16143 - + @@ -893197,14 +894323,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -893218,14 +894344,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -893239,14 +894365,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -893260,14 +894386,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -893281,14 +894407,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -893302,14 +894428,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -893323,14 +894449,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -893344,14 +894470,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -893365,14 +894491,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -893386,14 +894512,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -893407,14 +894533,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -893428,14 +894554,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -893449,14 +894575,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -893470,14 +894596,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -893491,14 +894617,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -893512,14 +894638,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -893533,14 +894659,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -893554,14 +894680,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -893575,14 +894701,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -893596,14 +894722,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -893617,14 +894743,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -893638,14 +894764,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -893659,14 +894785,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -893680,14 +894806,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -893701,14 +894827,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -893722,14 +894848,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -893743,14 +894869,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + ISBN:9780878932504 - + @@ -893832,14 +894958,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -893853,14 +894979,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -893904,14 +895030,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + ISBN:0073040584 - + @@ -893925,14 +895051,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:16417468 - + @@ -893946,14 +895072,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipathways:WP2062 - + @@ -893982,14 +895108,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipedia - + @@ -894003,14 +895129,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipedia - + @@ -894054,14 +895180,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + teleosts - + @@ -894075,14 +895201,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Mammals - + @@ -894126,14 +895252,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + EHDAA2 - + @@ -894147,16 +895273,16 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Mammals EHDAA2 ISBN:0073040584-table13.1 - + @@ -894170,15 +895296,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Mammals ISBN:0073040584-table13.1 - + @@ -894192,15 +895318,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Elasmobranchii ISBN:0073040584-table13.1 - + @@ -894214,15 +895340,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Elasmobranchii ISBN:0073040584-table13.1 - + @@ -894236,15 +895362,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Elasmobranchii ISBN:0073040584-table13.1 - + @@ -894258,15 +895384,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Elasmobranchii ISBN:0073040584-table13.1 - + @@ -894280,15 +895406,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Urodele ISBN:0073040584-table13.1 - + @@ -894302,15 +895428,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Urodele ISBN:0073040584-table13.1 - + @@ -894324,15 +895450,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Urodele ISBN:0073040584-table13.1 - + @@ -894346,15 +895472,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Anuran ISBN:0073040584-table13.1 - + @@ -894368,15 +895494,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Turtles ISBN:0073040584-table13.1 - + @@ -894390,15 +895516,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Turtles ISBN:0073040584-table13.1 - + @@ -894412,15 +895538,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Lizard ISBN:0073040584-table13.1 - + @@ -894434,15 +895560,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Lizard ISBN:0073040584-table13.1 - + @@ -894456,15 +895582,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Snakes ISBN:0073040584-table13.1 - + @@ -894478,15 +895604,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Snakes ISBN:0073040584-table13.1 - + @@ -894500,15 +895626,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Aves ISBN:0073040584-table13.1 - + @@ -894522,15 +895648,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Aves ISBN:0073040584-table13.1 - + @@ -894544,14 +895670,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + conservatively place at deuterostome, excluding acoelomates - + @@ -894610,14 +895736,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + MP - + @@ -894631,14 +895757,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + XAO-abduced - + @@ -894652,14 +895778,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -894733,14 +895859,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:3631381 - + @@ -894784,14 +895910,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + AAO - + @@ -894850,14 +895976,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:11997885 - + @@ -894871,15 +895997,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + skin of the upper lip dbpedia - + @@ -894893,14 +896019,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + dbpedia - + @@ -894929,14 +896055,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + DOI:10.1038/ncomms1502 - + @@ -894950,14 +896076,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + DOI:10.1038/ncomms1502 - + @@ -894971,15 +896097,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + EHDAA2 ISBN:9780878932504 - + @@ -894993,15 +896119,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Gallus gallus PMID:17051547 - + @@ -895094,14 +896220,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + DOI:10.1007/BF02547558 - + @@ -895115,15 +896241,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipedia:Digastric_muscle Wikipedia:Mastoid_process - + @@ -895154,14 +896280,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + cloacal bursa - + @@ -895175,14 +896301,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:11479904 - + @@ -895256,14 +896382,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipedia - + @@ -895277,14 +896403,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -895298,14 +896424,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:22135653 - + @@ -895319,14 +896445,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:22135653 - + @@ -895340,14 +896466,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:22135653 - + @@ -895436,15 +896562,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + 15% WP - + @@ -895458,15 +896584,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + 85-100% WP - + @@ -895480,16 +896606,16 @@ formulas. Modified from Cooper and Dawson 2009. - + - + in the opossum the panniculus carnosis attaches to the humerus DOI:10.2307/1373999 FEED:rd - + @@ -895533,14 +896659,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:7559104 - + @@ -895599,14 +896725,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + EHDAA2 - + @@ -895836,5 +896962,5 @@ formulas. Modified from Cooper and Dawson 2009. - + diff --git a/uberon.obo b/uberon.obo index fcd9631ebf..874a08cd0f 100755 --- a/uberon.obo +++ b/uberon.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: releases/2024-05-13 +data-version: releases/2024-06-14 subsetdef: 1_STAR "" subsetdef: 2_STAR "" subsetdef: 3_STAR "" @@ -104,6 +104,14 @@ synonymtypedef: SYSTEMATIC "a systematic synonym used as the base name for desig synonymtypedef: systematic_synonym "" synonymtypedef: vertebrate "" default-namespace: uberon +idspace: dc http://purl.org/dc/elements/1.1/ +idspace: doap http://usefulinc.com/ns/doap# +idspace: foaf http://xmlns.com/foaf/0.1/ +idspace: oboInOwl http://www.geneontology.org/formats/oboInOwl# +idspace: sssom https://w3id.org/sssom/ +idspace: swrl http://www.w3.org/2003/11/swrl# +idspace: swrlb http://www.w3.org/2003/11/swrlb# +idspace: terms http://purl.org/dc/terms/ treat-xrefs-as-equivalent: AEO treat-xrefs-as-equivalent: BILA treat-xrefs-as-equivalent: BSPO @@ -4039,8 +4047,8 @@ namespace: chebi_ontology subset: 3_STAR synonym: ">C=O" RELATED [IUPAC] synonym: "carbonyl" EXACT IUPAC_NAME [IUPAC] -synonym: "carbonyl group" EXACT [UniProt] synonym: "carbonyl group" EXACT [ChEBI] +synonym: "carbonyl group" EXACT [UniProt] is_a: CHEBI:51422 ! organodiyl group [Term] @@ -23243,7 +23251,7 @@ creation_date: 2010-09-13T02:37:23Z [Term] id: CL:0002301 name: type B synovial cell -def: "A resident stromal cell located in the synovial membrane and responsible for the production of immune-related cytokines and chemokines. This cell type secretes glycoproteins and hyaluronic acid, has abundant granular endoplasmic reticulum, but contains fewer vacuoles and vesicles." [GOC:tfm, ISBN:0517223651, PMID:34433485, PMID:34772990] {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0002-0819-0473"} +def: "A resident stromal cell located in the synovial membrane and responsible for the production of immune-related cytokines and chemokines. This cell type secretes glycoproteins and hyaluronic acid, has abundant granular endoplasmic reticulum, but contains fewer vacuoles and vesicles." [GOC:tfm, ISBN:0517223651, PMID:34433485, PMID:34772990] {terms:contributor="https://orcid.org/0000-0002-0819-0473"} comment: Type B synovial cells play a key role in the pathogenesis of chronic inflammatory diseases, such as rheumatoid arthritis, and are essential for the maintenance of normal joint functions. Fibroblast-like synoviocytes from different joints have different properties, which may contribute to the characteristic pattern of joint involvement in different types of arthritis. {xref="https://en.wikipedia.org/wiki/Fibroblast-like_synoviocyte", xref="PMID:34433485"} synonym: "fibroblast-like synoviocyte" EXACT [] synonym: "synovial fibroblast" EXACT [PMID:23147896] @@ -24083,7 +24091,7 @@ subset: human_reference_atlas synonym: "O-2A/OPC" RELATED OMO:0003000 [PMID:24133281] synonym: "O2A/OPC" RELATED OMO:0003000 [PMID:11756508] synonym: "oligodendrocyte-type 2 astrocyte (O-2A) progenitor cell" BROAD [PMID:2253328] -synonym: "oligodendrocyte/type-2 astrocyte progenitor cell" BROAD [PMID:24133281] {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0002-0819-0473"} +synonym: "oligodendrocyte/type-2 astrocyte progenitor cell" BROAD [PMID:24133281] {terms:contributor="https://orcid.org/0000-0002-0819-0473"} xref: MESH:D000073637 is_a: CL:0000123 ! neuron associated cell (sensu Vertebrata) is_a: CL:0011026 ! progenitor cell @@ -24432,7 +24440,7 @@ creation_date: 2011-02-08T01:37:59Z [Term] id: CL:0002523 name: mesonephric podocyte -def: "A specialized epithelial cell that contains \"feet\" that interdigitate with the \"feet\" of other glomerular epithelial cells in the mesonephros." [GOC:tfm] {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0002-2244-7917"} +def: "A specialized epithelial cell that contains \"feet\" that interdigitate with the \"feet\" of other glomerular epithelial cells in the mesonephros." [GOC:tfm] {terms:contributor="https://orcid.org/0000-0002-2244-7917"} synonym: "mesonephric glomerular visceral epithelial cell" EXACT [ZFA:0001674] is_a: CL:0000653 ! podocyte intersection_of: CL:0000653 ! podocyte @@ -32468,7 +32476,7 @@ property_value: dcterms-date "2022-07-08T11:39:38Z" xsd:dateTime [Term] id: CL:4030008 name: pronephric podocyte -def: "A specialized epithelial cell that contains \"feet\" that interdigitate with the \"feet\" of other glomerular epithelial cells in the pronephros." [PMID:10322630] {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0002-2244-7917"} +def: "A specialized epithelial cell that contains \"feet\" that interdigitate with the \"feet\" of other glomerular epithelial cells in the pronephros." [PMID:10322630] {terms:contributor="https://orcid.org/0000-0002-2244-7917"} synonym: "pronephric glomerular visceral epithelial cell" EXACT [ZFA:0001673] is_a: CL:0000653 ! podocyte intersection_of: CL:0000653 ! podocyte @@ -32479,7 +32487,7 @@ property_value: dcterms-date "2022-03-11T14:38:32Z" xsd:dateTime [Term] id: CL:4030012 name: kidney loop of Henle short descending thin limb epithelial cell -def: "Epithelial cell of the descending thin limb of the short loop (cortical) nephron limited to the outer medulla (mainly inner strip). It is known in some mammalian species that the short descending limb of the loop of Henle selectively expresses the serine protease Corin, the homeobox TF Uncx, and the urea channel Slc14a2." [PMID:33769951] {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0003-2804-127X"} +def: "Epithelial cell of the descending thin limb of the short loop (cortical) nephron limited to the outer medulla (mainly inner strip). It is known in some mammalian species that the short descending limb of the loop of Henle selectively expresses the serine protease Corin, the homeobox TF Uncx, and the urea channel Slc14a2." [PMID:33769951] {terms:contributor="https://orcid.org/0000-0003-2804-127X"} subset: human_reference_atlas synonym: "epithelial cell of the descending thin limb of the short loop of Henle" EXACT [] is_a: CL:1001111 ! kidney loop of Henle thin descending limb epithelial cell @@ -33112,7 +33120,7 @@ synonym: "fetal pre-type II alveolar epithelial cell" EXACT [PMID:12114192] is_a: CL:0000322 ! pneumocyte relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2023-06-02T09:19:31Z" xsd:dateTime -property_value: note "According to PMID:1316350 this cell type does not yet produce surfactant. According to PMID:9109447 and PMID:12114192 this cell type produces low levels of surfactant that can be increased by administration of very low-density lipoproteins. This cell type is of medical relevance, as a central feature of the fetal respiratory distress syndrome seems to be the presence in the lung of abundant pre-type II alveolar epithelial cells (PMID:1316350)." xsd:string +property_value: oboInOwl:note "According to PMID:1316350 this cell type does not yet produce surfactant. According to PMID:9109447 and PMID:12114192 this cell type produces low levels of surfactant that can be increased by administration of very low-density lipoproteins. This cell type is of medical relevance, as a central feature of the fetal respiratory distress syndrome seems to be the presence in the lung of abundant pre-type II alveolar epithelial cells (PMID:1316350)." xsd:string [Term] id: CL:4040004 @@ -152852,7 +152860,8 @@ relationship: continuous_with UBERON:0000996 ! vagina relationship: contributes_to_morphology_of UBERON:0000995 ! uterus relationship: part_of UBERON:0000995 ! uterus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Uterus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.0/assets/VH_F_Uterus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.1/assets/VH_F_Uterus.glb" xsd:anyURI property_value: external_definition "The narrow caudal end of the uterus that opens into the vagina. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001359", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/uterine+cervix"} property_value: has_relational_adjective "cervical" xsd:string property_value: homology_notes "The evolution of mammals is associated with radical changes in their reproductive biology, particularly the structure and function of the female reproductive organs. These changes include the evolution of the uterus, cervix, vagina, placenta and specialized cell types associated with each of those structures.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001359", ontology="VHOG", source="DOI:10.1098/rspb.2004.2848 Lynch VJ, Roth JJ, Takahashi K, Dunn CW, Nonaka DF, Stopper GF, Wagner GP, Adaptive evolution of HoxA-11 and HoxA-13 at the origin of the uterus in mammals. Proceedings of the Royal Society of London, Series B (2004)", source="http://bgee.unil.ch/"} @@ -152944,7 +152953,7 @@ name: chemosensory organ subset: functional_classification subset: uberon_slim synonym: "chemosensory sensory organ" EXACT [FBbt:00005157] -xref: FBbt:00005157 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005157 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000020 ! sense organ intersection_of: UBERON:0000020 ! sense organ intersection_of: capable_of GO:0007606 ! sensory perception of chemical stimulus @@ -153117,7 +153126,7 @@ xref: EHDAA2:0001445 xref: EHDAA:2893 xref: EMAPA:16665 xref: EV:0100335 -xref: FBbt:00005098 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005098 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:9903 xref: GAID:715 xref: MA:0000218 @@ -153319,7 +153328,7 @@ xref: EMAPA:35305 xref: EV:0100129 xref: FMA:16018 xref: MA:0001582 -xref: MESH:D007515 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D007515 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C32509 xref: SCTID:361339003 xref: TAO:0001260 @@ -153364,7 +153373,7 @@ xref: EMAPA:35328 xref: EV:0100093 xref: FMA:16017 xref: MA:0002415 -xref: MESH:D046790 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D046790 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32546 xref: SCTID:248202004 xref: TAO:0001249 @@ -153403,9 +153412,9 @@ synonym: "insect eye" RELATED [] synonym: "Komplexauge" RELATED [BTO:0001921] synonym: "zusammengesetztes Auge" RELATED [BTO:0001921] xref: BTO:0001921 -xref: FBbt:00004508 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004508 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000217 -xref: IDOMAL:0002421 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: IDOMAL:0002421 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: TGMA:0000024 xref: Wikipedia:Compound_eye is_a: UBERON:0015165 ! multi-unit eye @@ -153483,7 +153492,7 @@ xref: CALOHA:TS-2043 xref: EHDAA2:0001824 xref: EHDAA:500 xref: EMAPA:35955 -xref: FBbt:00005155 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005155 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: GAID:63 xref: HAO:0000930 xref: MA:0000017 @@ -153498,8 +153507,8 @@ intersection_of: UBERON:0000062 ! organ intersection_of: capable_of GO:0050906 ! detection of stimulus involved in sensory perception relationship: capable_of GO:0050906 ! detection of stimulus involved in sensory perception relationship: part_of UBERON:0001032 ! sensory system +property_value: dc:contributor https://github.com/cmungall property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray722.png" xsd:anyURI -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall [Term] id: UBERON:0000021 @@ -153622,7 +153631,7 @@ xref: EFO:0000799 xref: EHDAA2:0003193 xref: EMAPA:37283 {source="MA:th"} xref: EV:0100155 -xref: FBbt:00007000 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000144 xref: MAT:0000023 xref: MESH:D005121 @@ -153684,6 +153693,10 @@ relationship: in_taxon NCBITaxon:40674 ! Mammalia relationship: part_of UBERON:0002465 ! lymphoid system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b8/Illu_lymph_node_structure.png" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-left/v1.0/assets/NIH_F_Lymph_Node_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-right/v1.0/assets/NIH_F_Lymph_Node_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb" xsd:anyURI property_value: homology_notes "Lymph nodes that are associated with the lymphatic system have evolved in mammals.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001273", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.630", source="http://bgee.unil.ch/"} property_value: seeAlso "https://github.com/obophenotype/uberon/issues/650" xsd:anyURI @@ -153993,12 +154006,12 @@ relationship: has_part UBERON:0001136 ! mesothelium relationship: has_part UBERON:0002384 ! connective tissue relationship: part_of NCBITaxon:6072 ! Eumetazoa relationship: part_of UBERON:0000060 ! anatomical wall +property_value: dc:contributor https://github.com/cmungall property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/4e/Ens.png" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/en/thumb/4/4e/Ens.png/200px-Ens.png" xsd:anyURI property_value: external_definition "A multi-tissue structure that is comprised of a secretory epithelial layer and a connective tissue layer.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005425", ontology="TAO", source="Wikipedia:Serous_membrane"} property_value: external_definition "a smooth membrane consisting of a thin layer of cells which excrete serous fluid. Serous membranes line and enclose several body cavities, known as serous cavities, where they secrete a lubricating fluid which reduces friction from muscle movement. Serosa is not to be confused with adventitia, a connective tissue layer which binds together structures rather than reducing friction between them. Each serous membrane is composed of a secretory epithelial layer and a connective tissue layer underneath. The epithelial layer, known as mesothelium, consists of a single layer of avascular flat nucleated cells (cuboidal epithelium) which produce the lubricating serous fluid. This fluid has a consistency similar to thin mucus. These cells are bound tightly to the underlying connective tissue. The connective tissue layer provides the blood vessels and nerves for the overlying secretory cells, and also serves as the binding layer which allows the whole serous membrane to adhere to organs and other structures.[WP]" xsd:string {source="Wikipedia:Serous_membrane"} property_value: external_ontology_notes "in FMA, SM = mesothelium + connective tissue. It excludes the cavity. Serous sac = SM + cavity. Note that the SM is a subtype of wall in FMA." xsd:string {external_ontology="FMA"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall [Term] id: UBERON:0000043 @@ -154076,7 +154089,7 @@ xref: FMA:5888 xref: MA:0000231 xref: MA:0000232 xref: MAT:0000162 -xref: MESH:D005727 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D005727 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: MIAA:0000162 xref: NCIT:C12462 xref: SCTID:244455004 @@ -154150,6 +154163,7 @@ relationship: develops_from UBERON:0003869 ! presumptive ganglion relationship: immediate_transformation_of UBERON:0003869 {source="Bgee:AN"} ! presumptive ganglion relationship: part_of UBERON:0001016 ! nervous system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +property_value: dc:contributor https://github.com/cmungall property_value: editor_note "TODO - check vert vs invert. Other species: Any of a number of aggregations of neurons, glial cells and their processes, surrounded by a glial cell and connective tissue sheath (plural: ganglia). // Subdivision of neural tree (organ) which primarily consists of cell bodies of neurons located outside the neuraxis (brain and spinal cord); together with a nucleus and its associated nerve, it constitutes a neural tree (organ). Examples: spinal ganglion, trigeminal ganglion, superior cervical ganglion, celiac ganglion, inferior hypogastric (pelvic) ganglion. // a cluster of nerve cells and associated glial cells (nuclear location) // Portion of tissue that contains cell bodies of neurons and is located outside the central nervous system." xsd:string property_value: external_definition "A ganglion is a cluster of neurons. It is part of a nervous system. It may include glial cells. The neurons are arranged in a specific constellation: neuronal somata are concentrated at the surface, thus forming a cell cortex, and neurites are concentrated in the centre of the ganglion to form the neuropil. A ganglion is a distinct unit but several ganglia may be anterio-posteriorly joined by connectives or transversally by commissures" xsd:string {source="PMID:21062451"} property_value: external_definition "Portion of tissue that contains cell bodies of neurons and is located outside the central nervous system.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010426", ontology="AAO", source="AAO:EJS"} @@ -154157,7 +154171,6 @@ property_value: external_definition "Structures containing a collection of nerve property_value: external_definition "Subdivision of nervous system which primarily consists of cell bodies of neurons located outside the neuraxis (brain and spinal cord. Examples: spinal ganglion, trigeminal ganglion, superior cervical ganglion, celiac ganglion, inferior hypogastric (pelvic) ganglion (adapted from Foundational Model of Anatomy)[NLXANAT:100302]." xsd:string {source="NLXANAT:100302"} property_value: has_relational_adjective "ganglionic" xsd:string property_value: homology_notes "Cranial sensory placodes are focused areas of the head ectoderm of vertebrates that contribute to the development of the cranial sense organs and their associated ganglia. Placodes have long been considered a key character of vertebrates, and their evolution is proposed to have been essential for the evolution of an active predatory lifestyle by early vertebrates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000156", ontology="VHOG", source="DOI:10.1016/j.ydbio.2005.02.021 Mazet F, Hutt JA, Milloz J, Millard J, Graham A, Shimeld SM, Molecular evidence from Ciona intestinalis for the evolutionary origin of vertebrate sensory placodes. Developmental Biology (2005)", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall [Term] id: UBERON:0000046 @@ -154265,8 +154278,12 @@ relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0002421 {source="NIFSTD"} ! hippocampal formation relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/21/Gray747.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0000053 @@ -154437,7 +154454,7 @@ synonym: "ducts" RELATED OMO:0003004 [XAO:0004000] synonym: "exocrine duct" NARROW [] synonym: "exocrine gland duct" NARROW [] xref: AAO:0011123 -xref: FBbt:00100314 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00100314 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:30320 xref: galen:Duct xref: NCIT:C12948 @@ -154490,9 +154507,12 @@ relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata relationship: part_of UBERON:0000160 ! intestine relationship: part_of UBERON:0004907 ! lower digestive tract relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/SBU_F_Intestine_Large.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb" xsd:anyURI property_value: homology_notes "Intestinal surface area also is increased in amphibians and reptiles by internal folds and occasionally by a few villi. The intestine can be divided into a small intestine and a slightly wider large intestine.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000054", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.566", source="http://bgee.unil.ch/"} [Term] @@ -154525,7 +154545,7 @@ xref: BILA:0000003 xref: CARO:0000003 xref: EHDAA2:0003003 xref: EMAPA:0 -xref: FBbt:00007001 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007001 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:305751 xref: FMA:67135 xref: GAID:781 @@ -154761,11 +154781,11 @@ relationship: immediately_preceded_by UBERON:0000069 ! larval stage relationship: only_in_taxon NCBITaxon:33392 ! Endopterygota relationship: part_of UBERON:0000092 ! post-embryonic stage relationship: simultaneous_with GO:0035209 {notes="may be better to model pupal development as including the pre-pupal stage"} ! pupal development -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/ANiknejad -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/dosumis -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/fbastian -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mmc46 +property_value: dc:contributor https://github.com/ANiknejad +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/dosumis +property_value: dc:contributor https://github.com/fbastian +property_value: dc:contributor https://github.com/mmc46 property_value: seeAlso "https://github.com/obophenotype/uberon/issues/562" xsd:anyURI property_value: taxon_notes "The pupal stage is found only in holometabolous insects, those that undergo a complete metamorphosis, going through four life stages; embryo, larva, pupa and imago" xsd:string @@ -154889,7 +154909,7 @@ def: "The surface (external) layer of ectoderm which begins to proliferate short subset: pheno_slim synonym: "surface (external) ectoderm" EXACT [] synonym: "surface ectoderm" EXACT [MP:0012532] -xref: BTO:0006242 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006242 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EHDAA2:0001968 xref: EHDAA:1494 xref: EHDAA:350 @@ -154966,7 +154986,7 @@ xref: EHDAA2:0001054 xref: EHDAA:8136 xref: EMAPA:17968 xref: EV:0100101 -xref: FBbt:00004927 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004927 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:45664 xref: GAID:386 xref: HAO:0000505 @@ -154986,7 +155006,7 @@ intersection_of: part_of UBERON:0003101 ! male organism disjoint_from: UBERON:0000474 ! female reproductive system relationship: part_of UBERON:0003101 ! male organism relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb" xsd:anyURI property_value: homology_notes "By far, sexual reproduction is the more common pattern among living vertebrate forms and its widespread occurrence suggests that it is the plesiomorphic, or primitive, reproductive mode among the vertebrates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000725", ontology="VHOG", source="ISBN:978-0792383369 Lombardi J, Comparative vertebrate reproduction (1998) p.43", source="http://bgee.unil.ch/"} [Term] @@ -155438,9 +155458,9 @@ xref: XAO:0000208 is_a: UBERON:0002050 ! embryonic structure relationship: dubious_for_taxon NCBITaxon:7955 {source="http://zfin.org/zf_info/zfbook/stages/gast.html"} ! Danio rerio relationship: part_of UBERON:0004735 {source="https://orcid.org/0000-0003-3308-6245"} ! archenteron +property_value: dc:contributor https://github.com/ANiknejad +property_value: dc:contributor https://github.com/cmungall property_value: external_definition "A slit-like invagination on the dorsal side of the blastula surface of the embryo where the mesoderm and endoderm move inside the embryo at gatrulation.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000045", ontology="AAO", source="AAO:BJB"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/ANiknejad -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: seeAlso "https://github.com/obophenotype/uberon/issues/660" xsd:anyURI property_value: taxon_notes "In protostome development, the first opening in development, the blastopore, becomes the animal's mouth; In deuterostome development, the blastopore becomes the animal's anus" xsd:string @@ -155562,7 +155582,7 @@ xref: BILS:0000106 xref: EFO:0001322 xref: EHDAA:27 xref: FBdv:00005288 -xref: IDOMAL:0000302 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: IDOMAL:0000302 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C12601 xref: PdumDv:0000100 xref: VHOG:0000745 @@ -155856,7 +155876,7 @@ def: "Cell layer consisting of lining cells that separates the central nervous s synonym: "BBB" RELATED [] synonym: "blood-brain barrier" EXACT [] xref: http://uri.neuinfo.org/nif/nifstd/nlx_subcell_100205 -xref: MESH:D001812 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D001812 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C13194 xref: UMLS:C0005854 {source="ncithesaurus:Blood-Brain_Barrier"} xref: Wikipedia:Blood-brain_barrier @@ -155899,7 +155919,7 @@ synonym: "funiculus" EXACT [] synonym: "nerve fiber bundle" EXACT [FBbt:00005099] synonym: "neural fiber bundle" EXACT [] xref: CARO:0001001 -xref: FBbt:00005099 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005099 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: NLX:147821 is_a: UBERON:0005162 ! multi cell part structure relationship: has_part GO:0043005 ! neuron projection @@ -156256,7 +156276,7 @@ xref: EMAPA:18256 xref: FMA:15703 xref: galen:AnalCanal xref: MA:0000330 -xref: MESH:D001003 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D001003 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C12375 xref: SCTID:245438008 xref: UMLS:C0227411 {source="ncithesaurus:Anal_Canal"} @@ -156436,7 +156456,7 @@ xref: EFO:0000825 xref: EHDAA2:0001326 xref: EHDAA:542 xref: EMAPA:16262 -xref: FBbt:00003126 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003126 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:49184 xref: GAID:75 xref: galen:Mouth @@ -156509,7 +156529,7 @@ xref: EMAPA:18399 xref: EV:0100057 xref: FMA:20292 xref: HAO:0000669 -xref: MESH:D009055 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D009055 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C12421 xref: SCTID:181220002 xref: TAO:0001027 @@ -156648,7 +156668,7 @@ id: UBERON:0000175 name: pleural effusion def: "Pleural effusion is a bodily fluid that is produced in exess and accumulates in the pleural cavity, the fluid-filled space that surrounds the lungs. Excessive amounts of such fluid can impair breathing by limiting the expansion of the lungs during inhalation." [ENVO:02000033] xref: ENVO:02000033 -xref: MESH:D010996 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D010996 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: ncithesaurus:Pleural_Effusion is_a: UBERON:0001087 ! pleural fluid relationship: located_in UBERON:0002402 ! pleural cavity @@ -156723,11 +156743,11 @@ relationship: part_of UBERON:0002390 ! hematopoietic system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: axiom_lost_from_external_ontology "relationship loss: subclass specialized connective tissue (AAO:0000571)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000046", ontology="AAO"} property_value: curator_notes "This class excludes blood analogues, such as the insect analog of blood. See UBERON:0000179 haemolymphatic fluid." xsd:string +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan property_value: external_definition "A complex mixture of cells suspended in a liquid matrix that delivers nutrients to cells and removes wastes. (Source: BioGlossary, www.Biology-Text.com)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000007", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Highly specialized circulating tissue consisting of several types of cells suspended in a fluid medium known as plasma.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000046", ontology="AAO", source="AAO:LAP"} property_value: homology_notes "Recent findings strongly suggest that the molecular pathways involved in the development and function of blood cells are highly conserved among vertebrates and various invertebrates phyla. (...) There is now good reason to believe that, in vertebrates and invertebrates alike, blood cell lineages diverge from a common type of progenitor cell, the hemocytoblast.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000224", ontology="VHOG", source="DOI:10.1146/annurev.cellbio.22.010605.093317 Hartenstein V, Blood cells and blood cell development in the animal kingdom. Annual review of cell and developmental biology (2006) ", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan [Term] id: UBERON:0000179 @@ -156812,9 +156832,9 @@ relationship: only_in_taxon NCBITaxon:40674 ! Mammalia relationship: part_of UBERON:0000956 ! cerebral cortex relationship: part_of UBERON:0001869 ! cerebral hemisphere relationship: surrounded_by UBERON:0013118 ! sulcus of brain -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/RDruzinsky -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/wdahdul +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/RDruzinsky +property_value: dc:contributor https://github.com/wdahdul property_value: seeAlso "https://github.com/obophenotype/uberon/issues/573" xsd:anyURI [Term] @@ -156834,7 +156854,7 @@ creation_date: 2009-04-10T08:15:44Z id: UBERON:0000202 name: glial blood brain barrier def: "A blood brain barrier composed of glial cells." [https://orcid.org/0000-0002-6601-2165] -xref: FBbt:00007091 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007091 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000120 ! blood brain barrier intersection_of: UBERON:0000120 ! blood brain barrier intersection_of: composed_primarily_of CL:0000125 ! glial cell @@ -156924,7 +156944,7 @@ id: UBERON:0000207 name: compound eye corneal lens def: "A chitinous extracellular secretion of the four underlying cone cells and the pigment cells." [GO:0048058] synonym: "acellular lens" RELATED [] -xref: FBbt:00004199 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004199 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: TADS:0000304 is_a: UBERON:0000476 ! acellular anatomical structure is_a: UBERON:0005389 ! transparent eye structure @@ -157090,7 +157110,7 @@ synonym: "craniovertebral joint" EXACT [FMA:24939] synonym: "occipito atlantal joint" EXACT [] synonym: "occipito-atlantal joint" EXACT [] xref: FMA:24939 -xref: MESH:D001269 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D001269 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32158 xref: ncithesaurus:Atlanto-occipital_Joint-Atlanto xref: SCTID:361831006 @@ -157223,7 +157243,7 @@ relationship: only_in_taxon NCBITaxon:32524 {source="Hymans"} ! Amniota relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: surrounds UBERON:0000922 ! embryo property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e7/Gray14.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Placenta.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/placenta-full-term-female/v1.0/assets/VH_F_Placenta.glb" xsd:anyURI property_value: external_definition "A thin but tough extraembryonic membrane of reptiles, birds and mammals that lines the chorion and contains the fEtus and the amniotic fluid around it. [Biology_Online][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000721", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: has_relational_adjective "amniotic" xsd:string property_value: homology_notes "Structures homologous to the four extraembryonic membranes of reptiles and birds appear in mammals: amnion, chorion, yolk sac, and allantois.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000721", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.187", source="http://bgee.unil.ch/"} @@ -157303,7 +157323,7 @@ xref: FMA:75000 is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate relationship: develops_from UBERON:0010962 ! extensor pre-muscle mass relationship: part_of UBERON:0000026 ! appendage -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/cmungall [Term] id: UBERON:0000312 @@ -157514,7 +157534,7 @@ synonym: "fetus" NARROW [BTO:0000449] xref: BTO:0000449 xref: CALOHA:TS-0360 xref: EFO:0001323 -xref: FBbt:00005333 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005333 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:63919 xref: GAID:552 xref: MESH:D005333 @@ -157897,8 +157917,8 @@ property_value: taxon_notes "In humans it is a tendon-like structure that has de id: UBERON:0000353 name: parenchyma def: "Functional part of an organ in the body. This is in contrast to the stroma, which refers to the structural tissue of organs, being exactly, connective tissues." [Wikipedia:Parenchyma] -xref: BTO:0000999 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} -xref: BTO:0001539 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0000999 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0001539 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EHDAA:3015 xref: EHDAA:3905 xref: EHDAA:3999 @@ -158067,10 +158087,18 @@ relationship: contributes_to_morphology_of UBERON:0002113 ! kidney relationship: has_part UBERON:0004200 ! kidney pyramid relationship: part_of UBERON:0002113 ! kidney relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.2/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.2/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/6/69/Illu_kidney.jpg" xsd:anyURI property_value: structure_notes "The renal medulla is split up into a number of sections, known as the renal pyramids. Blood enters into the kidney via the renal artery, which then splits up to form the arcuate arterioles. The arcuate arterioles each in turn branch into interlobular arterioles, which finally reach the glomeruli. At the glomerulus the blood reaches a highly disfavourable pressure gradient and a large exchange surface area, which forces the serum portion of the blood out of the vessel into the renal tubules. Flow continues through the renal tubules, including the proximal tubule, the Loop of Henle, and finally leaves the kidney by means of the collecting duct, leading to the renal ureter. The renal medulla contains the structures of the nephrons responsible for maintaining the salt and water balance of the blood. The renal medulla is hypertonic to the filtrate in the nephron and aids in the reabsorption of water" xsd:string @@ -158152,8 +158180,8 @@ xref: ZFA:0005271 is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate relationship: develops_from UBERON:0010977 ! flexor pre-muscle mass relationship: part_of UBERON:0000026 ! appendage +property_value: dc:contributor https://github.com/cmungall property_value: external_definition "A muscle that decreases the angle of a joint.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005271", ontology="TAO", source="ZFIN:curator"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall [Term] id: UBERON:0000368 @@ -158620,7 +158648,7 @@ xref: BTO:0001592 xref: EV:0100145 xref: FMA:76690 xref: galen:Meniscus -xref: MESH:D000072600 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D000072600 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C33096 xref: UMLS:C0224498 {source="ncithesaurus:Meniscus"} xref: Wikipedia:Meniscus_(anatomy) @@ -158714,9 +158742,9 @@ is_a: UBERON:0002360 ! meninx is_a: UBERON:0010313 ! neural crest-derived structure relationship: develops_from UBERON:0007646 ! endomeninx relationship: immediate_transformation_of UBERON:0007646 ! endomeninx +property_value: dc:contributor https://github.com/cmungall property_value: editor_note "check relationship to secondary meninx" xsd:string property_value: external_ontology_notes "in FMA/NIF this is a superclass of PM/AM - in BTO it is the mereological sum. We go with superclass here, as we are naming the class in the singular" xsd:string {external_ontology="FMA"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall [Term] id: UBERON:0000392 @@ -159403,6 +159431,7 @@ id: UBERON:0000435 name: lateral tuberal nucleus def: "Nerve cell nuclei situated ventrally in the intermediate hypothalamic region, mainly in the lateral hypothalamic area." [BTO:0002481] comment: The lateral tuberal nucleus is specific to humans and higher primates, however, this term is sometimes used loosely. If using for rodents, please use tuberal nucleus (sensu Rodentia) instead. If refering to the nucleus lateralis tuberis of fish, please use nucleus lateralis tuberis system (sensu Teleostei) {xref="PMID:29976824", xref="PMID:29976812", xref="DOI:10.1016/0016-6480(71)90165-1", xref="PMID:1362279"} +subset: human_reference_atlas synonym: "lateral tuberal hypothalamic nuclei" EXACT [FMA:62336] synonym: "lateral tuberal nuclear complex" EXACT [BIRNLEX:1206] synonym: "lateral tuberal nuclei" EXACT [FMA:62336] @@ -159424,6 +159453,7 @@ xref: UMLS:C0086527 {source="BIRNLEX:1206"} is_a: UBERON:0006568 ! hypothalamic nucleus relationship: in_taxon NCBITaxon:9443 ! Primates relationship: part_of UBERON:0002430 ! lateral hypothalamic area +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0000437 @@ -159538,9 +159568,9 @@ xref: NCIT:C33040 xref: SCTID:64626006 xref: UMLS:C0229654 {source="ncithesaurus:Lymphoid_Follicle"} is_a: UBERON:0001744 {source="FMA"} ! lymphoid tissue +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan property_value: editor_note "introducing part_of to 'cortex of lymph node' as in issue 7 introduces equivalencies; the part_of has instead been added to 'lymph node follicle'" xsd:string -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan property_value: seeAlso "https://github.com/obophenotype/uberon/issues/6" xsd:anyURI property_value: seeAlso "https://github.com/obophenotype/uberon/issues/7" xsd:anyURI @@ -159850,7 +159880,7 @@ xref: CALOHA:TS-2101 xref: CARO:0000004 xref: EHDAA2:0003004 xref: EMAPA:35178 -xref: FBbt:00007019 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007019 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:9669 xref: galen:BodySubstance xref: HAO:0000004 @@ -159884,7 +159914,7 @@ xref: AEO:0000005 xref: BILA:0000005 xref: CARO:0000005 xref: EHDAA2:0003005 -xref: FBbt:00007017 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007017 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:5897 xref: HAO:0000005 xref: NCIT:C94478 @@ -159912,7 +159942,7 @@ xref: AEO:0000006 xref: BILA:0000006 xref: CARO:0000006 xref: EHDAA2:0003006 -xref: FBbt:00007016 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007016 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:67165 xref: HAO:0000006 xref: TAO:0001836 @@ -159937,7 +159967,7 @@ xref: AEO:0000007 xref: BILA:0000007 xref: CARO:0000007 xref: EHDAA2:0003007 -xref: FBbt:00007015 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007015 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:67112 xref: HAO:0000007 xref: TAO:0001835 @@ -159974,11 +160004,11 @@ xref: EHDAA2:0003011 xref: EHDAA:392 xref: EMAPA:16103 xref: EV:0100000 -xref: FBbt:00004856 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004856 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:7149 xref: galen:AnatomicalSystem xref: HAO:0000011 -xref: IDOMAL:0002460 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: IDOMAL:0002460 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MA:0000003 xref: NCIT:C12919 xref: SCTID:278195005 @@ -160029,7 +160059,7 @@ xref: EHDAA2:0003191 xref: EHDAA:1 xref: EMAPA:25765 xref: EV:0100016 -xref: FBbt:00000001 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000001 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:256135 xref: galen:Organism xref: HAO:0000012 @@ -160067,8 +160097,8 @@ consider: FBbt:00007012 consider: FMA:86454 consider: GO:0044464 consider: HAO:0000014 +consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao-1337158144 consider: NCIT:C34070 -consider: NIF_Subcellular:sao-1337158144 consider: OpenCyc:Mx4rwQwkcZwpEbGdrcN5Y29ycA consider: TGMA:0001834 consider: UMLS:C1178969 {source="ncithesaurus:Cell_Part"} @@ -160139,7 +160169,7 @@ xref: EHDAA2:0002007 xref: EHDAA:8146 xref: EMAPA:17972 xref: EV:0100102 -xref: FBbt:00004928 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004928 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:7210 xref: GAID:396 xref: galen:Testis @@ -160198,7 +160228,7 @@ xref: EHDAA2:0000506 xref: EHDAA:8116 xref: EMAPA:17959 xref: EV:0100110 -xref: FBbt:00004864 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004864 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:45663 xref: GAID:364 xref: HAO:0000324 @@ -160243,7 +160273,7 @@ xref: CARO:0000032 xref: EFO:0000808 xref: EHDAA2:0003032 xref: EMAPA:36031 -xref: FBbt:00007009 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007009 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:7153 xref: galen:BodyPart xref: HAO:0000032 @@ -160285,7 +160315,7 @@ xref: AEO:0000040 xref: BILA:0000040 xref: CARO:0000040 xref: EHDAA2:0003040 -xref: FBbt:00007013 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007013 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:63863 xref: HAO:0000040 xref: TAO:0000382 @@ -160304,7 +160334,7 @@ name: anatomical cluster def: "Anatomical group whose component anatomical structures lie in close proximity to each other." [FBbt:00007277] subset: common_anatomy subset: upper_level -xref: FBbt:00007277 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007277 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: VHOG:0001737 is_a: UBERON:0034923 ! disconnected anatomical group relationship: present_in_taxon NCBITaxon:33090 ! Viridiplantae @@ -160329,7 +160359,7 @@ xref: CALOHA:TS-2119 xref: CARO:0000042 xref: EHDAA2:0003042 xref: EHDAA:46 -xref: FBbt:00005835 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005835 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:85537 xref: HAO:0000042 xref: NCIT:C34055 @@ -160365,7 +160395,7 @@ xref: CALOHA:TS-2090 xref: CARO:0000043 xref: EHDAA2:0003043 xref: EMAPA:35868 -xref: FBbt:00007003 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007003 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:9637 xref: galen:Tissue xref: HAO:0000043 @@ -160399,7 +160429,7 @@ xref: BILA:0000054 xref: CARO:0000054 xref: EHDAA2:0003054 xref: HAO:0000054 -xref: IDOMAL:0002459 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: IDOMAL:0002459 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: TAO:0001512 xref: TGMA:0001846 xref: VHOG:0001724 @@ -160424,7 +160454,7 @@ xref: AEO:0000055 xref: BILA:0000055 xref: CARO:0000055 xref: EHDAA2:0003055 -xref: FBbt:00007010 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007010 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000055 xref: TAO:0001488 xref: TGMA:0001847 @@ -160494,7 +160524,7 @@ xref: CALOHA:TS-0288 xref: CARO:0000066 xref: EHDAA2:0003066 xref: EMAPA:32738 -xref: FBbt:00007005 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007005 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:9639 xref: GAID:402 xref: HAO:0000066 @@ -160563,7 +160593,7 @@ xref: AEO:0000068 xref: BILA:0000068 xref: CARO:0000068 xref: EHDAA2_RETIRED:0003068 -xref: FBbt:00007027 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007027 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:45567 xref: HAO:0000068 xref: NCIT:C33552 @@ -160735,7 +160765,7 @@ synonym: "valva ileocaecalis" RELATED OMO:0003011 [Wikipedia:Ileocecal_valve] synonym: "valva ileocaecalis (valva ilealis)" EXACT [FMA:15973] xref: FMA:15973 xref: galen:IleocecalValve -xref: MESH:D007080 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D007080 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C13066 xref: SCTID:362153007 xref: UMLS:C0020880 {source="ncithesaurus:Ileocecal_Valve"} @@ -160746,8 +160776,11 @@ is_a: UBERON:0011185 ! gastrointestinal sphincter relationship: part_of UBERON:0001073 {source="FMA"} ! ileocecal junction relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/fc/Gray1075.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb" xsd:anyURI [Term] id: UBERON:0000642 @@ -160906,7 +160939,7 @@ subset: uberon_slim subset: upper_level synonym: "segment" EXACT [FBbt:00000003] synonym: "serial element" EXACT [] -xref: FBbt:00000003 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000003 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000929 xref: MAT:0000271 xref: MIAA:0000271 @@ -161014,7 +161047,7 @@ subset: uberon_slim subset: vertebrate_core synonym: "chorion" RELATED [] synonym: "chorion (egg)" EXACT [] -xref: FBbt:00000038 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000038 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: TAO:0000329 xref: TGMA:0000681 xref: Wikipedia:Chorion_(egg) @@ -161059,11 +161092,11 @@ xref: EHDAA2:0000002 xref: EHDAA2_RETIRED:0003236 xref: EHDAA:38 xref: EMAPA:16039 -xref: FBbt:00000052 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000052 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:69068 xref: GAID:963 xref: http://neurolex.org/wiki/Category\:Embryonic_organism -xref: IDOMAL:0000646 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: IDOMAL:0000646 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MAT:0000226 xref: MESH:D004622 xref: MIAA:0000019 @@ -161102,7 +161135,7 @@ xref: AAO:0000480 xref: BILA:0000035 xref: BTO:0000556 xref: EMAPA:36033 -xref: FBbt:00000110 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000110 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:69069 xref: GAID:1303 xref: MESH:D005855 @@ -161138,7 +161171,7 @@ xref: EFO:0000414 xref: EHDAA2:0000428 xref: EMAPA:16069 xref: EV:0100003 -xref: FBbt:00000111 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000111 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:69070 xref: GAID:1304 xref: MAT:0000155 @@ -161179,7 +161212,7 @@ xref: EFO:0002545 xref: EHDAA2:0000436 xref: EMAPA:16062 xref: EV:0100005 -xref: FBbt:00000125 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000125 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:69071 xref: GAID:1305 xref: MAT:0000175 @@ -161225,7 +161258,7 @@ xref: EHDAA:160 xref: EHDAA:183 xref: EMAPA:16083 xref: EV:0100006 -xref: FBbt:00000126 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000126 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:69072 xref: GAID:522 xref: MAT:0000174 @@ -161260,7 +161293,7 @@ subset: efo_slim subset: uberon_slim synonym: "MesEc" RELATED [] xref: EFO:0003336 -xref: FBbt:00000136 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000136 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MAT:0000243 xref: MIAA:0000243 is_a: UBERON:0000923 ! germ layer @@ -161319,7 +161352,7 @@ synonym: "stomodeal-hypophyseal primordium" BROAD [XAO:0000269] xref: BTO:0004224 xref: EHDAA2:0001929 xref: EMAPA:16263 -xref: FBbt:00000439 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000439 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:295846 xref: NCIT:C34306 xref: TAO:0001290 @@ -161352,7 +161385,7 @@ synonym: "proctodaeum" EXACT [] xref: AAO:0011087 xref: EHDAA2:0000121 xref: EMAPA:25038 -xref: FBbt:00000123 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000123 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: NCIT:C34278 xref: TAO:0000066 xref: UMLS:C0231054 {source="ncithesaurus:Proctodeum"} @@ -161366,14 +161399,14 @@ relationship: has_potential_to_develop_into UBERON:0001353 ! anal region relationship: located_in UBERON:0012469 {source="EHDAA2"} ! external anal region relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa relationship: part_of UBERON:0007026 ! presumptive gut +property_value: dc:contributor https://github.com/ANiknejad +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/dosumis +property_value: dc:contributor https://github.com/mmc46 property_value: editor_note "removed WBbt:0006795 'proctodeum' - junction between the alimentary and genital tracts in the male." xsd:string property_value: external_definition "An inward fold on the surface of the embryonic ectoderm that develops into part of the anal passage.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000066", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Inward fold on the surface of the embryonic ectoderm that develops into part of the anal passage.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0011087", ontology="AAO", source="ZFA:0000066"} property_value: has_relational_adjective "proctodeal" xsd:string -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/ANiknejad -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/dosumis -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mmc46 property_value: seeAlso "https://github.com/obophenotype/uberon/issues/685" xsd:anyURI [Term] @@ -161431,7 +161464,7 @@ subset: uberon_slim synonym: "ventral cord" EXACT [GO:0007419] xref: BTO:0002328 xref: EFO:0000896 -xref: FBbt:00005097 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005097 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MAT:0000339 xref: MIAA:0000339 xref: NLX:146329 @@ -161492,8 +161525,12 @@ is_a: UBERON:0005341 {source="MP"} ! ventral commissure disjoint_from: UBERON:0000936 {source="lexical"} ! posterior commissure relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b4/Gray744.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI property_value: homology_notes "In all vertebrates the thin structure that connects the two halves of the telencephalon shows a ridge-like thickening at the basal side known as the anterior commissure.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001558", ontology="VHOG", source="DOI:10.1111/j.1749-6632.1969.tb20432.x", source="http://bgee.unil.ch/"} [Term] @@ -161553,9 +161590,9 @@ comment: Though inaginal discs are sometimes described as “epithelial sacs”, subset: uberon_slim synonym: "imaginal disk" RELATED [] xref: BTO:0004658 -xref: FBbt:00001761 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001761 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MAT:0000064 -xref: MESH:D060227 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D060227 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MIAA:0000064 xref: Wikipedia:Imaginal_disc is_a: UBERON:0000481 {source="FBbt text definition"} ! multi-tissue structure @@ -161631,6 +161668,7 @@ property_value: homology_notes "(...) an essentially similar sequence of events id: UBERON:0000942 name: frontal nerve (branch of ophthalmic) def: "The frontal nerve is the largest branch of the ophthalmic, and may be regarded, both from its size and direction, as the continuation of the nerve. It enters the orbit through the supraorbital foramen, and runs forward between the Levator palpebræ superioris and the periosteum. Midway between the apex and base of the orbit it divides into two branches, supratrochlear nerve and supraorbital nerve. [WP,unvetted]." [Wikipedia:Frontal_nerve] +subset: human_reference_atlas subset: uberon_slim synonym: "frontal nerve" EXACT [FMA:52638] synonym: "nervus frontalis" RELATED OMO:0003011 [Wikipedia:Frontal_nerve] @@ -161643,6 +161681,7 @@ is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011779 ! nerve of head region relationship: branching_part_of UBERON:0000348 {source="FMA"} ! ophthalmic nerve relationship: part_of UBERON:0000348 ! ophthalmic nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/45/Gray787.png" xsd:anyURI [Term] @@ -161798,8 +161837,12 @@ relationship: located_in UBERON:0002224 {source="MA-modified"} ! thoracic cavity relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0010191 {source="EHDAA2"} ! aortic system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/9/91/Aorta_scheme.jpg" xsd:anyURI property_value: editor_note "This class is currently a mixed bag, encompassing (1) the entirety of the mammalian aorta together with (2) the developmental and phylogenetic homologs of its segments: the ventral aorta and dorsal aortae." xsd:string {source="WP"} property_value: external_definition "The main artery of the circulatory system which carries oxygenated blood from the heart to all the arteries of the body except those of the lungs.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010213", ontology="AAO", source="AAO:BJB"} @@ -161863,9 +161906,12 @@ relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata relationship: part_of UBERON:0015410 {source="MA"} ! heart plus pericardium relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: axiom_lost_from_external_ontology "relationship type change: differentiates_from lateral plate mesoderm (AAO:0010574) CHANGED TO: develops_from lateral plate mesoderm (UBERON:0003081)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010210", ontology="AAO"} -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Heart.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb" xsd:anyURI property_value: external_definition "Blood pumping organ composed of four chambers: sinus venosus, atrium, cardiac ventricle and bulbus arteriosus.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000114", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Part of the circulatory system responsible for pumping blood; composed of three chambers--two atria and one ventricle.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010210", ontology="AAO", source="AAO:BJB"} property_value: has_relational_adjective "cardiac" xsd:string @@ -161888,7 +161934,7 @@ xref: EFO:0002969 xref: EHDAA2:0002224 xref: EMAPA:35306 xref: EV:0100128 -xref: FBbt:00005068 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005068 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:9668 xref: GAID:439 xref: MA:0000012 @@ -162029,7 +162075,7 @@ xref: EHDAA:2641 xref: EHDAA:6485 xref: EMAPA:16894 xref: EV:0100164 -xref: FBbt:00005095 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005095 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:50801 xref: GAID:571 xref: galen:Brain @@ -162063,14 +162109,20 @@ relationship: immediate_transformation_of UBERON:0006238 {source="Bgee:AN"} ! fu relationship: in_anterior_side_of UBERON:0000468 ! multicellular organism relationship: part_of UBERON:0001017 {source="FMA"} ! central nervous system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: dc:contributor https://github.com/cmungall +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.0/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.0/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI property_value: editor_note "requires review for applicability to invertebrate structures, e.g. synganglion" xsd:string property_value: external_definition "Cavitated compound organ which is comprised of gray and white matter and surrounds the cerebral ventricular system.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000008", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Part of the central nervous system situated within the cranium and composed of both nerve cell bodies and nerve fibers.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010478", ontology="AAO", source="AAO:BJB"} property_value: external_definition "The part of the central nervous system contained within the cranium, comprising the forebrain, midbrain, hindbrain, and metencephalon. It is derived from the anterior part of the embryonic neural tube (or the encephalon). Does not include retina. (CUMBO)" xsd:string {source="http://neurolex.org/wiki/Cumbo_terms"} property_value: homology_notes "(...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (4) a single, tubular nerve cord that is located dorsal to the notochord (...) (reference 1); The neural tube is destined to differentiate into the brain and spinal cord (the central nervous system) (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000157", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.28, ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.165", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall [Term] id: UBERON:0000956 @@ -162216,6 +162268,7 @@ relationship: extends_fibers_into UBERON:0001908 ! optic tract relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0001894 ! diencephalon property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b3/1543%2CVisalius%27OpticChiasma.jpg" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI property_value: external_definition "The point at which fibers of the optic nerves cross.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010622", ontology="AAO", source="AAO:DSM"} property_value: homology_notes "The chiasm has been studied in great detail in some animals, while in others relatively little or nothing is known. Although there are some gross architectural features that are conserved within some animals, such as birds and fish, the general picture is one of diversity. This review will attempt to consider the key features of such diversity of chiasmatic organisation in vertebrates and the mechanisms that sculpt them from the limited literature that is available. However, as so much research has been undertaken on the structure and development of the chiasm in laboratory animals, any review must consider the information that has been gleaned from them and hope that future studies will determine whether the features revealed in these animals, and the underlying mechanisms that generate them, have a common vertebrate plan.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000190", ontology="VHOG", source="DOI:10.1016/j.preteyeres.2005.04.005 Jeffery G, Erskine L, Variations in the architecture and development of the vertebrate optic chiasm. Progress in retinal and eye research (2005)", source="http://bgee.unil.ch/"} @@ -162267,6 +162320,7 @@ id: UBERON:0000962 name: nerve of cervical vertebra def: "The cervical nerves are the spinal nerves from the cervical vertebrae. Although there are seven cervical vertebrae (C1-C7), there are eight cervical nerves (C1-C8). All nerves except C8 emerge above their corresponding vertebrae, while the C8 nerve emerges below the C7 vertebra. (In the other portions of the spine, the nerve emerges below the vertebra with the same name. Dorsal (posterior) distribution includes the greater occipital (C2) and third occipital (C3). Ventral (anterior) distribution includes the cervical plexus (C1-C4) and brachial plexus (C5-C8) [WP,unvetted]." [Wikipedia:Cervical_nerves] comment: Innervates: sternohyoid muscle, sternothyroid muscle, omohyoid muscle[WP] +subset: human_reference_atlas subset: uberon_slim synonym: "cervical nerve" EXACT [FMA:5859] synonym: "cervical nerve tree" EXACT [] @@ -162284,12 +162338,13 @@ is_a: UBERON:0001780 ! spinal nerve intersection_of: UBERON:0001780 ! spinal nerve intersection_of: extends_fibers_into UBERON:0002726 ! cervical spinal cord relationship: extends_fibers_into UBERON:0002726 ! cervical spinal cord +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray795.png" xsd:anyURI [Term] id: UBERON:0000963 name: head sensillum -xref: FBbt:00004114 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004114 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MAT:0000204 xref: MIAA:0000204 is_a: UBERON:0002536 ! arthropod sensillum @@ -162502,7 +162557,7 @@ xref: BTO:0000439 xref: CALOHA:TS-0309 xref: EFO:0000827 xref: EV:0100336 -xref: FBbt:00005162 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005162 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: GAID:69 xref: MAT:0000140 xref: MESH:D005123 @@ -162527,7 +162582,7 @@ subset: uberon_slim synonym: "omatidia" RELATED OMO:0003004 [] synonym: "omatidium" EXACT [] xref: BTO:0001922 -xref: FBbt:00004510 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004510 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000666 xref: MAT:0000143 xref: MIAA:0000143 @@ -162547,7 +162602,7 @@ synonym: "feeler" RELATED [BTO:0000074] xref: AEO:0000198 xref: BTO:0000074 xref: EFO:0000874 -xref: FBbt:00004511 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004511 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000101 xref: MAT:0000086 xref: MIAA:0000086 @@ -162644,14 +162699,14 @@ relationship: part_of UBERON:0000915 ! thoracic segment of trunk relationship: part_of UBERON:0003252 {source="FMA"} ! thoracic rib cage relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: axiom_lost_from_external_ontology "relationship loss: part_of postzonal element (AAO:0000938)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000765", ontology="AAO"} +property_value: dc:contributor https://github.com/alex-dececchi +property_value: dc:contributor https://github.com/cmungall property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/12/Illu_thoracic_cage.jpg" xsd:anyURI property_value: development_notes "While its developmental origins are similar to the ribs (from the myospetum and septum of the trunk region), it is often associated with the pectoral skeleton, due to both function and physical connections (i.e. the coracoid of archosaurs). It may be a single element or a series of smaller structure (sternebrae). Based on Kardong 2012. [PHENOSCAPE:ad]." xsd:string {source="WP"} property_value: editor_note "in EMAPA and EHDAA2 this is part of the skeleton of pectoral girdle; the classic def of pectoral girdle (see WP) excludes the rib cage and sternum" xsd:string property_value: external_definition "Single element that constitutes the postzonal area of the pectoral girdle.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000765", ontology="AAO", source="AAO:LAP"} property_value: has_relational_adjective "sternal" xsd:string property_value: homology_notes "Fishes lack a sternum. (...) A sternum is absent in the first fossil tetrapods, but it is present in modern amphibians. (...) Thus, a sternum occurs in some modern amphibians, birds, mammals and archosaurs. However, its absence in the common ancestors to these groups means that it has arisen independently several times within the field of the midventral connective tissue.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000856", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.294", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/alex-dececchi -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: taxon_notes "in birds, either ratite (no keel or carina) or carinate (keel and carina present)" xsd:string property_value: taxon_notes "It probably first evolved in early tetrapods as an extension of the pectoral girdle; it is not found in fish. In amphibians and reptiles it is typically a shield-shaped structure, often composed entirely of cartilage. It is absent in both turtles and snakes. In birds it is a relatively large bone and typically bears an enormous projecting keel to which the flight muscles are attached. Only in mammals does the sternum take on the elongated, segmented form seen in humans. In some mammals, such as opossums, the individual segments never fuse and remain separated by cartilagenous plates throughout life" xsd:string @@ -162697,12 +162752,12 @@ relationship: part_of UBERON:0001440 {source="FMA"} ! forelimb skeleton relationship: part_of UBERON:0003822 {source="FMA"} ! forelimb stylopod relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: proximally_connected_to UBERON:0007831 ! pectoral girdle skeleton +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/67/Illu_upper_extremity.jpg" xsd:anyURI property_value: external_definition "Paired, elongate, cylindrical bones of endochondral origin that extend from the pectoral girdle to the elbows.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000679", ontology="AAO", source="AAO:LAP"} property_value: has_relational_adjective "humeral" xsd:string property_value: homology_notes "Most anatomists now agree that the three proximal bones of the tetrapod limbs are homologous to the two or three proximal elements of the paired fin skeleton of other sarcopterygians, that is the humerus-femur, radius-tibia, and ulna-fibula.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001158", ontology="VHOG", source="ISBN:978-0198540472 Janvier P, Early vertebrates (1996) p.268", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly [Term] id: UBERON:0000977 @@ -162979,7 +163034,7 @@ synonym: "thoracic wing" RELATED [] synonym: "thorax wing" RELATED [OBOL:automatic] synonym: "wing" BROAD SENSU [FBbt:00004729] synonym: "wing of thorax" RELATED [OBOL:automatic] -xref: FBbt:00004729 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004729 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0001089 xref: TGMA:0000196 is_a: UBERON:0000023 ! wing @@ -163025,7 +163080,7 @@ subset: efo_slim subset: uberon_slim synonym: "balancer organ" RELATED [] xref: EFO:0000886 -xref: FBbt:00004783 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004783 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MAT:0000203 xref: MIAA:0000203 xref: Wikipedia:Haltere @@ -163151,13 +163206,13 @@ xref: EHDAA2:0001603 xref: EHDAA:5923 xref: EMAPA:17381 xref: EV:0100100 -xref: FBbt:00004857 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004857 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:7160 xref: GAID:363 xref: HAO:0000374 xref: HAO:0000895 xref: MA:0000326 -xref: MESH:D005835 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D005835 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: MIAA:0000305 xref: NCIT:C12841 xref: SCTID:278875001 @@ -163285,7 +163340,7 @@ xref: EHDAA2:0001360 xref: EHDAA:8124 xref: EMAPA:17962 xref: EV:0100111 -xref: FBbt:00004865 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004865 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:7209 xref: GAID:367 xref: MA:0000384 @@ -163373,7 +163428,7 @@ synonym: "spermatheca" RELATED OMO:0003004 [] synonym: "spermathecae" RELATED OMO:0003004 [] xref: BTO:0001273 xref: EFO:0000977 -xref: FBbt:00004921 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004921 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000945 xref: MAT:0000168 xref: MIAA:0000168 @@ -163420,7 +163475,8 @@ relationship: only_in_taxon NCBITaxon:32525 ! Theria relationship: part_of UBERON:0004175 ! internal genitalia relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/6a/Female_reproductive_system_lateral_nolabel.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Uterus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.0/assets/VH_F_Uterus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.1/assets/VH_F_Uterus.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/c/cb/Female_anatomy.png" xsd:anyURI property_value: development_notes "Two uteruses usually form initially in a female fetus, and in placental mammals they may partially or completely fuse into a single uterus depending on the species. In many species with two uteruses, only one is functional. Humans and other higher primates such as chimpanzees, along with horses, usually have a single completely fused uterus, although in some individuals the uteruses may not have completely fused [Wikipedia:Uterus]" xsd:string property_value: external_definition "The hollow muscular organ in female mammals in which the blastocyst normally becomes embedded and in which the developing embryo and fetus is nourished. Its cavity opens into the vagina below and into a uterine tube on either side. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001137", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/uterus"} @@ -163551,7 +163607,8 @@ relationship: develops_from UBERON:0000080 ! mesonephros relationship: part_of UBERON:0000473 ! testis relationship: produces UBERON:0010143 ! seminal vesicle fluid property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d1/Male_anatomy_en.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb" xsd:anyURI property_value: external_definition "Either of a pair of pouchlike glands situated on each side of the male urinary bladder that secrete seminal fluid and nourish and promote the movement of spermatozoa through the urethra. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001379", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/prominence"} property_value: function_notes "The seminal vesicles secrete a significant proportion of the fluid that ultimately becomes semen. Lipofuscin granules from dead epithelial cells give the secretion its yellowish color. About 50-70% of the seminal fluid in humans originates from the seminal vesicles, but is not expelled in the first ejaculate fractions which are dominated by spermatozoa and zinc-rich prostatic fluid." xsd:string property_value: homology_notes "(In mammalian testis) Along the way (the sperm travel), three accessory sex glands, the seminal vesicle, prostate, and bulbourethral (Cowper's) gland, respectively, add their secretions as sperm move from the testes to the urethra.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001379", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.556", source="http://bgee.unil.ch/"} @@ -163591,7 +163648,8 @@ relationship: channels_into UBERON:0000057 ! urethra relationship: in_lateral_side_of UBERON:0000079 ! male reproductive system relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata relationship: part_of UBERON:0000079 ! male reproductive system -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/3/35/Male_anatomy.png" xsd:anyURI [Term] @@ -163649,7 +163707,7 @@ synonym: "cuticle" NARROW [FBbt:00004970] synonym: "exoskeleton" BROAD [] synonym: "insect cuticle" RELATED [] xref: EFO:0000944 -xref: FBbt:00004970 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004970 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000240 xref: MAT:0000150 xref: MIAA:0000150 @@ -163789,11 +163847,12 @@ relationship: never_in_taxon NCBITaxon:147099 {source="Wikipedia:Acoelomorpha"} relationship: only_in_taxon NCBITaxon:33213 ! Bilateria relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/5e/Respiratory_system_complete_en.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.0/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb" xsd:anyURI property_value: external_definition "The anatomical system in which the exchange of oxygen and carbon dioxide between the organism and its environment.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000541", ontology="AAO", source="AAO:BJB"} property_value: homology_notes "There is no doubt that the primitive pattern of vertebrate air-breathing is the buccal pulse pump found in actinopterygian fishes.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000202", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.599 and Figure 18-23", source="http://bgee.unil.ch/"} @@ -163850,7 +163909,7 @@ xref: BILA:0000082 xref: BTO:0000058 xref: CALOHA:TS-1293 xref: EFO:0000793 -xref: FBbt:00005055 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005055 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:7152 xref: GAID:278 xref: galen:DigestiveSystem @@ -163916,7 +163975,7 @@ xref: EHDAA2:0001601 xref: EHDAA:5901 xref: EMAPA:17366 xref: EV:0100095 -xref: FBbt:00005056 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005056 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:7159 xref: GAID:391 xref: galen:UrinaryTract @@ -163957,7 +164016,7 @@ subset: uberon_slim synonym: "systema cardiovasculare" RELATED OMO:0003011 [Wikipedia:Circulatory_system] xref: AAO:0000959 xref: CALOHA:TS-2103 -xref: MESH:D002319 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D002319 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: VHOG:0001248 xref: Wikipedia:Circulatory_system is_a: UBERON:0000467 ! anatomical system @@ -164013,7 +164072,7 @@ def: "Blood analogue used by all arthropods and most mollusks that have an open subset: uberon_slim synonym: "haemolymph" RELATED [] xref: BTO:0000572 -xref: FBbt:00005061 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005061 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: GAID:1220 xref: MAT:0000054 xref: MESH:D006458 @@ -164161,7 +164220,7 @@ xref: EHDAA2:0001246 xref: EHDAA:826 xref: EMAPA:16469 xref: EV:0100162 -xref: FBbt:00005093 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005093 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:7157 xref: GAID:466 xref: MA:0000016 @@ -164233,7 +164292,7 @@ xref: EHDAA:828 xref: EMAPA:16470 xref: EMAPA:16754 xref: EV:0100163 -xref: FBbt:00005094 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005094 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:55675 xref: GAID:570 xref: MA:0000167 @@ -164277,7 +164336,7 @@ synonym: "tract" RELATED [] synonym: "tract of neuraxis" EXACT [FMA:83847] xref: BIRNLEX:1649 xref: EV:0100304 -xref: FBbt:00005100 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005100 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:83847 xref: NLX:147822 is_a: UBERON:0000122 ! neuron projection bundle @@ -164328,10 +164387,10 @@ xref: Wikipedia:Commissure is_a: UBERON:0001018 ! axon tract relationship: intersects_midsagittal_plane_of UBERON:0001016 ! nervous system relationship: part_of UBERON:0002316 {gci_relation="part_of", gci_filler="NCBITaxon:7742", notes="myelin not present in all taxa that have a commissure"} ! white matter +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: external_definition "White matter fiber bundle that crosses the midline of the brain or spinal cord, that connects similar structures on both sides. (CUMBO; Heimer, L. The Human Brain, 2nd ed., 1995, pg 6)" xsd:string {source="http://neurolex.org/wiki/Cumbo_terms"} property_value: has_relational_adjective "commissural" xsd:string -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly [Term] id: UBERON:0001021 @@ -164359,7 +164418,7 @@ xref: EHDAA:4657 xref: EMAPA:32808 xref: EMAPA:32815 xref: EV:0100371 -xref: FBbt:00005105 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005105 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:65132 xref: FMA:65239 xref: GAID:747 @@ -164396,7 +164455,7 @@ is_obsolete: true consider: FBbt:00005107 consider: FMA:67301 consider: GO:0043025 -consider: NIF_Subcellular:sao1044911821 +consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao1044911821 [Term] id: UBERON:0001023 @@ -164411,9 +164470,9 @@ consider: FBbt:00005110 consider: FMA:67314 consider: GAID:749 consider: GO:0030425 +consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao1211023249 consider: MESH:A08.663.256 consider: NCIT:C32447 -consider: NIF_Subcellular:sao1211023249 consider: OpenCyc:Mx4rviIdspwpEbGdrcN5Y29ycA consider: TGMA:0001373 consider: UMLS:C0011305 @@ -164430,8 +164489,8 @@ consider: FBbt:00005113 consider: FMA:61814 consider: GAID:751 consider: GO:0043005 +consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao-867568886 consider: MESH:A08.663.256.500 -consider: NIF_Subcellular:sao-867568886 [Term] id: UBERON:0001025 @@ -164447,9 +164506,9 @@ consider: FBbt:00005114 consider: FMA:67408 consider: GAID:766 consider: GO:0045202 +consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao914572699 consider: MESH:A08.850 consider: NCIT:C13281 -consider: NIF_Subcellular:sao914572699 consider: SCTID:362298009 consider: UMLS:C0039062 @@ -164473,7 +164532,7 @@ synonym: "afferent nerve" RELATED [] synonym: "nervus sensorius" EXACT OMO:0003011 [Wikipedia:Sensory_nerve] xref: AEO:0000201 xref: EHDAA2:0003200 -xref: FBbt:00005136 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005136 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:5868 xref: Wikipedia:Sensory_nerve is_a: UBERON:0001021 ! nerve @@ -164513,8 +164572,8 @@ replaced_by: GO:0031594 consider: FBbt:00005142 consider: FMA:61803 consider: GAID:809 +consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao1124888485 consider: MESH:D009469 -consider: NIF_Subcellular:sao1124888485 [Term] id: UBERON:0001030 @@ -164524,7 +164583,7 @@ is_obsolete: true consider: FBbt:00005143 consider: FMA:67107 consider: GO:0048788 -consider: NIF_Subcellular:sao1884931180 +consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao1884931180 [Term] id: UBERON:0001031 @@ -164572,7 +164631,7 @@ xref: BILA:0000099 xref: EFO:0000805 xref: EHDAA2:0003094 xref: EMAPA:16192 -xref: FBbt:00007692 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007692 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:75259 xref: MA:0002442 xref: MAT:0000031 @@ -164725,7 +164784,7 @@ subset: uberon_slim synonym: "ch" RELATED [] synonym: "scolopophorous organ" RELATED [] xref: EFO:0000940 -xref: FBbt:00005215 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005215 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MAT:0000209 xref: MIAA:0000209 xref: Wikipedia:Chordotonal_organ @@ -164782,7 +164841,7 @@ xref: BTO:0000507 xref: EHDAA2:0000557 xref: EHDAA:520 xref: EMAPA:16548 -xref: FBbt:00005379 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005379 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:45616 xref: MA:0001526 xref: NCIT:C34180 @@ -164918,7 +164977,7 @@ xref: EHDAA2:0001775 xref: EHDAA:7987 xref: EMAPA:17751 xref: EV:0100059 -xref: FBbt:00005382 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005382 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:9597 xref: GAID:937 xref: galen:SalivaryGland @@ -164961,7 +165020,7 @@ xref: EFO:0001950 xref: EHDAA2:0001185 xref: EHDAA:983 xref: EMAPA:16255 -xref: FBbt:00005383 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005383 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:45617 xref: MA:0001564 xref: NCIT:C34210 @@ -164994,7 +165053,7 @@ xref: BTO:0000510 xref: EHDAA2:0000779 xref: EHDAA:975 xref: EMAPA:16715 -xref: FBbt:00005384 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005384 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:45618 xref: MA:0001527 xref: NCIT:C34188 @@ -165020,7 +165079,7 @@ name: neural glomerulus def: "A large synaptic bouton found in areas like olfactory bulb, cerebellar cortex and thalamus, that contacts many post-synaptic targets." [DOI:10.1016/B978-0-12-374245-2.00007-3, ILX:0728797] subset: uberon_slim synonym: "glomerulus" BROAD [FBbt:00005386] -xref: FBbt:00005386 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005386 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: ILX:0728797 is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0002606 ! neuropil @@ -165041,7 +165100,7 @@ xref: AEO:0000171 xref: BTO:0001886 xref: EFO:0001652 xref: EHDAA2:0003171 -xref: FBbt:00005495 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005495 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:86589 xref: MAT:0000482 xref: NCIT:C34275 @@ -165072,7 +165131,7 @@ xref: EMAPA:16164 xref: EMAPA:16757 xref: FMA:293882 xref: MAT:0000069 -xref: MESH:D054259 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D054259 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MIAA:0000069 xref: NCIT:C34226 xref: neuronames:1365 @@ -165176,8 +165235,12 @@ relationship: part_of UBERON:0006866 ! terminal part of digestive tract relationship: part_of UBERON:0012361 {source="EHDAA2"} ! internal anal region relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/75/Anorectum.gif" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb" xsd:anyURI property_value: external_definition "The terminal portion of the large intestine between the ileo-pelvic colon and the anus. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001751", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: has_relational_adjective "rectal" xsd:string property_value: taxon_notes "In the lungfish, sharks and rays the rectum opens into the cloaca which also receives wastes (urine) from the kidneys and material from the reproductive organs. In bony fish the rectum reaches the outside environment through the anus, which is normally situated just in front the urinary and reproductive openings. However in some fish the digestive tract may be curled back on itself, and in the Electric Eel (Electrophorus electricus) the anus is situated in the fish's throat. -- http://www.earthlife.net/fish/digestion.html" xsd:string @@ -165192,7 +165255,7 @@ subset: organ_slim synonym: "neurohaemal organ" RELATED [] xref: BTO:0002106 xref: EFO:0000864 -xref: FBbt:00005757 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005757 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MAT:0000212 xref: MIAA:0000212 is_a: UBERON:0010133 ! neuroendocrine gland @@ -165211,7 +165274,7 @@ synonym: "Malpighian tube" RELATED [UBERON:cjm] synonym: "tuba Malpighii" RELATED [BTO:0000810] xref: BTO:0000810 xref: EFO:0000243 -xref: FBbt:00005786 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005786 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: GAID:1228 xref: MAT:0000123 xref: MESH:D008317 @@ -165240,7 +165303,7 @@ subset: efo_slim synonym: "corpora cardiaca" RELATED OMO:0003004 [BTO:0000432] xref: BTO:0000432 xref: EFO:0000380 -xref: FBbt:00005799 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005799 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MAT:0000211 xref: MIAA:0000211 is_a: UBERON:0001053 ! arthropod neurohemal organ @@ -165257,7 +165320,7 @@ subset: uberon_slim synonym: "corpora allata" RELATED OMO:0003004 [BTO:0000291] xref: BTO:0000291 xref: EFO:0000379 -xref: FBbt:00005800 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005800 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MAT:0000210 xref: MESH:D003335 xref: MIAA:0000210 @@ -165277,7 +165340,7 @@ synonym: "corpora pedunculata" RELATED [FBbt:00005801, PMID:21062451] synonym: "mushroom bodies" EXACT OMO:0003004 [] xref: BTO:0002675 xref: EFO:0000925 -xref: FBbt:00005801 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005801 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: GAID:1231 xref: MAT:0000336 xref: MESH:D024521 @@ -165301,7 +165364,7 @@ comment: will be ceded to arthropod anatomy ontology subset: efo_slim subset: uberon_slim xref: EFO:0000926 -xref: FBbt:00005802 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005802 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MAT:0000337 xref: MIAA:0000337 is_a: UBERON:0011215 ! central nervous system cell part cluster @@ -165321,7 +165384,7 @@ xref: BILA:0000000 xref: BIRNLEX:6 xref: CARO:0000000 xref: EHDAA2:0002229 -xref: FBbt:10000000 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:10000000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:62955 xref: HAO:0000000 xref: MA:0000001 @@ -165562,8 +165625,12 @@ relationship: develops_from UBERON:0003924 {source="EHDAA2-inferred", source="WP relationship: part_of UBERON:0001264 ! pancreas relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/fe/Illu_pancreas_duodenum.jpg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pancreas.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.0/assets/VH_F_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.1/assets/VH_F_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.2/assets/3d-vh-f-pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.0/assets/VH_M_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.1/assets/VH_M_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.2/assets/3d-vh-m-pancreas.glb" xsd:anyURI property_value: homology_notes "Hagfish and lampreys may have one or more endocrine buds - and later the vertebrate pancreas develop as independent ventral and dorsal buds that eventually fuse to become one organ.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000448", ontology="VHOG", source="DOI:10.1016/j.crvi.2007.03.006 Madsen OD, Pancreas phylogeny and ontogeny in relation to a 'pancreatic stem cell'. Comptes Rendus Biologies (2007)", source="http://bgee.unil.ch/"} [Term] @@ -165627,16 +165694,15 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0001072 -name: posterior vena cava +name: inferior vena cava def: "A vein that carries deoxygenated blood from the lower half of the body into the right atrium of the heart." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Inferior_vena_cava] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "caudal vena cava" RELATED [VHOG:0001194] synonym: "inferior caval vein" EXACT [http://orcid.org/0000-0002-6601-2165] -synonym: "inferior vena cava" EXACT [Wikipedia:Venae_cavae] synonym: "postcava" RELATED [] -synonym: "posterior vena cava" EXACT [Wikipedia:Venae_cavae] +synonym: "posterior vena cava" EXACT [PMID:21154280] synonym: "vena cava inferior" RELATED OMO:0003011 [BTO:0002682, Wikipedia:Inferior_vena_cava] xref: AAO:0011083 xref: BTO:0002682 @@ -166598,14 +166664,14 @@ relationship: overlaps UBERON:0001469 {gci_relation="part_of", gci_filler="NCBIT relationship: part_of UBERON:0007831 {source="FMA", source="VSAO"} ! pectoral girdle skeleton relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: axiom_lost_from_external_ontology "relationship loss: part_of zonal element (AAO:0000936)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000761", ontology="AAO"} +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/5/59/Pectoral_girdles-en.svg" xsd:anyURI property_value: development_notes "In most birds and mammals the clavicles are the only dermal elements in the trunk, and is the only membrane bone associated with the pectoral girdle in these taxa. However, there can be secondary cartilage, or subsequent endochondral ossification, or fusion with endochondral elements. In rodents, the lateral ends of the clavicle are endochondral but the main portion is dermal." xsd:string {source="ISBN:978-0-12-319060-4"} property_value: external_definition "Slender, paired bones of intramembranous origin that invest the anterior margins of the procoracoids.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000761", ontology="AAO", source="AAO:LAP"} property_value: external_ontology_notes "FMA and MA differ in whether they consider this part of the shoulder" xsd:string {external_ontology="FMA"} property_value: has_relational_adjective "clavicular" xsd:string property_value: homology_notes "In early tetrapods, the connecting skull bone, the posttemporal, and adjoining shoulder bones, supracleithrum and postcleithrum (=anocleithrum), are absent, leaving a dermal shoulder girdle composed of the remaining ventral elements: the paired cleithrum and clavicle, and an unpaired midventral interclavicle that joins both halves of the girdle across the midline. (...) Several dermal elements of the shoulder persist in early synapsids. The clavicle and interclavicle are present in therapsids and monotremes, but in marsupials and placentals, the interclavicle is absent, the clavicle often is reduced in size, and the scapula becomes the predominant shoulder element.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000849", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.330-333 and Figure 9.18", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly property_value: taxon_notes "The clavicle first appears as part of the skeleton in primitive bony fish, where it is associated with the pectoral fin; they also have a bone called the cleithrum. In such fish, the paired clavicles run behind and below the gills on each side, and are joined by a solid symphysis on the fish's underside. They are, however, absent in cartilagenous fish and in the vast majority of living bony fish, including all of the teleosts[ISBN 0-03-910284-X]." xsd:string [Term] @@ -166873,8 +166939,10 @@ xref: Wikipedia:Right_lobe_of_liver xref: ZFA:0005173 is_a: UBERON:0001113 ! lobe of liver property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a3/Gray1087-liver.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb" xsd:anyURI property_value: external_definition "Portion of the liver which develops on the fish's right side adjacent to the gall bladder.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005173", ontology="TAO", source="ZFIN:curator"} [Term] @@ -166902,8 +166970,10 @@ xref: Wikipedia:Left_lobe_of_liver xref: ZFA:0005172 is_a: UBERON:0001113 ! lobe of liver property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a3/Gray1087-liver.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb" xsd:anyURI property_value: external_definition "Portion of the liver which develops on the fish's left side.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005172", ontology="TAO", source="ZFIN:curator"} [Term] @@ -166926,8 +166996,10 @@ xref: VHOG:0000509 xref: Wikipedia:Quadrate_lobe_of_liver is_a: UBERON:0001114 ! right lobe of liver property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a3/Gray1087-liver.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb" xsd:anyURI property_value: external_definition "The portion of the right lobe of the liver between the gall bladder, the porta hepatis, the round ligament and the lower margin of the organ. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000509", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] @@ -166963,8 +167035,10 @@ xref: Wikipedia:Caudate_lobe_of_liver is_a: UBERON:0001114 {source="MA"} ! right lobe of liver relationship: part_of UBERON:0001115 {source="FMA"} ! left lobe of liver property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a3/Gray1087-liver.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb" xsd:anyURI property_value: editor_note "Check left vs right in mouse and human" xsd:string property_value: external_definition "The portion of the right lobe of the liver between the fissure of the ligamentum venosum and the bare area of the liver. It ends into the superior recess of the lesser peritoneal sac. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000508", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: homology_notes "The caudate lobe is the only real and constant hepatic lobe of mammals (...) .[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000508", ontology="VHOG", source="PMID:1610084 Van Minh T, Galizia G, Lieto E, Anatomy of the caudate lobe of the liver. New aspects and surgical applications. (Article in French) Annales de chirurgie (1992)", source="http://bgee.unil.ch/"} @@ -167481,15 +167555,15 @@ intersection_of: composed_primarily_of CL:0008002 ! skeletal muscle fiber relationship: composed_primarily_of CL:0008002 ! skeletal muscle fiber relationship: develops_from UBERON:0003082 ! myotome relationship: part_of UBERON:0014892 ! skeletal muscle organ, vertebrate +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/dosumis +property_value: dc:contributor https://github.com/mellybelly +property_value: dc:contributor https://github.com/RDruzinsky property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/c/c0/Skeletal_muscle.jpg" xsd:anyURI property_value: editor_note "TODO - add skeletal muscle organ? See GO:0060538 skeletal muscle organ development. Todo - group FBbt:00005073 - somatic muscle." xsd:string property_value: external_definition "Muscle, composed of long cylindrical, multinucleated cells that attaches to the skeleton via tendons.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005277", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Tissue which consists of skeletal muscle fibers surrounded by endomysium. Examples: Skeletal muscle tissue of biceps, Skeletal muscle tissue of diaphragm[FMA]" xsd:string {external_class="FMA:14069", ontology="FMA"} property_value: homology_notes "This result implies the following views in terms of evolutionary differentiation: (1) Arthropod striated muscle and vertebrate skeletal and cardiac muscles share a common ancestor. In other words, they did not evolve independently (...) (5) The divergence of vertebrate skeletal and cardiac muscles/vertebrate smooth muscle and nonmuscle is at least before that of vertebrates/arthropods. In other words, emergence of skeletal and cardiac musle type tissues preceded the vertebrate/arthropod divergence (ca. 700 MYA).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000319", ontology="VHOG", source="PMID:10368962 Oota S, Saitou N, Phylogenetic relationship of muscle tissues deduced from superimposition of gene trees. Mol Biol Evol (1999)", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/dosumis -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/RDruzinsky [Term] id: UBERON:0001135 @@ -167629,6 +167703,9 @@ relationship: drains UBERON:0002108 ! small intestine relationship: part_of UBERON:0005806 ! portal system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI [Term] id: UBERON:0001139 @@ -167649,11 +167726,14 @@ xref: Wikipedia:Common_iliac_vein is_a: UBERON:0005610 {source="MA"} ! iliac vein is_a: UBERON:0015212 ! lateral structure relationship: drains UBERON:0010708 ! pectoral complex -relationship: in_lateral_side_of UBERON:0001072 {source="FMA-abduced-lr"} ! posterior vena cava -relationship: part_of UBERON:0001072 ! posterior vena cava -relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +relationship: in_lateral_side_of UBERON:0001072 {source="FMA-abduced-lr"} ! inferior vena cava +relationship: part_of UBERON:0001072 ! inferior vena cava +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/6/65/Iliac_veins.gif" xsd:anyURI property_value: taxon_notes "In human anatomy, the common iliac veins are formed by the external iliac veins and internal iliac veins and together, in the abdomen at the level of the fifth lumbar vertebrae, form the inferior vena cava. They drain blood from the pelvis and lower limbs. Both common iliac veins are accompanied along their course by common iliac arteries." xsd:string {source="Wikipedia:Common_iliac_vein"} @@ -167687,10 +167767,13 @@ intersection_of: drains UBERON:0002113 ! kidney relationship: drains UBERON:0002113 ! kidney relationship: part_of RO:0002577 ! system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: tributary_of UBERON:0001072 ! posterior vena cava +relationship: tributary_of UBERON:0001072 ! inferior vena cava property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1122.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI property_value: external_definition "The renal veins are veins that drain the kidney. They connect the kidney to the inferior vena cava. It is usually singular to each kidney, except in the condition 'multiple renal veins'. It also divides into 2 divisions upon entering the kidney: the anterior branch which receives blood from the anterior portion of the kidney and, the posterior branch which receives blood from the posterior portion. Often, each renal vein will have a branch that receives blood from the ureter. [WP,unvetted][Wikipedia:Renal_vein]." xsd:string {source="Wikipedia:Renal_vein"} property_value: external_ontology_notes "in EHDAA2, the renal vein is part of the kidney" xsd:string {external_ontology="EHDAA2"} @@ -167711,8 +167794,11 @@ intersection_of: UBERON:0001140 ! renal vein intersection_of: drains UBERON:0004539 ! right kidney relationship: drains UBERON:0004539 ! right kidney relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI property_value: external_definition "A vein that drains blood from the right kidney into the inferior vena cava[ncithesaurus]." xsd:string {source="ncithesaurus:Right_Renal_Vein"} [Term] @@ -167733,8 +167819,11 @@ intersection_of: drains UBERON:0004538 ! left kidney relationship: drains UBERON:0004538 ! left kidney relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1122.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI property_value: external_definition "A vein that drains blood from the left kidney into the inferior vena cava[ncithesaurus]." xsd:string {source="ncithesaurus:Left_Renal_Vein"} [Term] @@ -167772,7 +167861,7 @@ relationship: develops_from UBERON:0005487 {gci_relation="part_of", gci_filler=" relationship: drains UBERON:0002107 ! liver relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0006877 ! vasculature of liver -relationship: tributary_of UBERON:0001072 {source="FMA-abduced-lr"} ! posterior vena cava +relationship: tributary_of UBERON:0001072 {source="FMA-abduced-lr"} ! inferior vena cava property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/61/Gray1121.png" xsd:anyURI property_value: editor_note "todo - add developmental relationships for other taxa" xsd:string @@ -167803,7 +167892,7 @@ is_a: UBERON:0001638 ! vein is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0001638 ! vein intersection_of: drains UBERON:0000473 ! testis -relationship: connected_to UBERON:0001072 ! posterior vena cava +relationship: connected_to UBERON:0001072 ! inferior vena cava relationship: connected_to UBERON:0001330 ! pampiniform plexus relationship: drains UBERON:0000473 ! testis relationship: in_lateral_side_of UBERON:0000468 ! multicellular organism @@ -167911,8 +168000,10 @@ xref: SCTID:279965008 xref: Wikipedia:Bare_area_of_the_liver is_a: UBERON:0000466 ! immaterial anatomical entity relationship: part_of UBERON:0001114 ! right lobe of liver -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb" xsd:anyURI [Term] id: UBERON:0001150 @@ -167938,8 +168029,12 @@ is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001264 ! pancreas relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/fe/Illu_pancreas_duodenum.jpg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pancreas.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.0/assets/VH_F_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.1/assets/VH_F_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.2/assets/3d-vh-f-pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.0/assets/VH_M_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.1/assets/VH_M_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.2/assets/3d-vh-m-pancreas.glb" xsd:anyURI property_value: homology_notes "Hagfish and lampreys may have one or more endocrine buds - and later the vertebrate pancreas develop as independent ventral and dorsal buds that eventually fuse to become one organ.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000451", ontology="VHOG", source="DOI:10.1016/j.crvi.2007.03.006 Madsen OD, Pancreas phylogeny and ontogeny in relation to a 'pancreatic stem cell'. Comptes Rendus Biologies (2007)", source="http://bgee.unil.ch/"} [Term] @@ -167967,8 +168062,12 @@ relationship: develops_from UBERON:0009708 {source="EHDAA2"} ! dorsal pancreas relationship: part_of UBERON:0001264 {source="FMA"} ! pancreas relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/fe/Illu_pancreas_duodenum.jpg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pancreas.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.0/assets/VH_F_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.1/assets/VH_F_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.2/assets/3d-vh-f-pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.0/assets/VH_M_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.1/assets/VH_M_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.2/assets/3d-vh-m-pancreas.glb" xsd:anyURI property_value: homology_notes "Hagfish and lampreys may have one or more endocrine buds - and later the vertebrate pancreas develop as independent ventral and dorsal buds that eventually fuse to become one organ.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000452", ontology="VHOG", source="DOI:10.1016/j.crvi.2007.03.006 Madsen OD, Pancreas phylogeny and ontogeny in relation to a 'pancreatic stem cell'. Comptes Rendus Biologies (2007)", source="http://bgee.unil.ch/"} [Term] @@ -168056,8 +168155,12 @@ relationship: part_of UBERON:0000059 {source="MA"} ! large intestine relationship: part_of UBERON:0001155 {source="EHDAA2"} ! colon relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/82/Stomach_colon_rectum_diagram.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb" xsd:anyURI property_value: has_relational_adjective "caecal" xsd:string property_value: taxon_notes "A cecum is present in most amniote species, and also in lungfish, but not in any living species of amphibian. In reptiles, it is usually a single median structure, arising from the dorsal side of the large intestine. Birds typically have two paired ceca, as, unlike other mammals, do hyraxes. Most mammalian herbivores have a relatively large cecum, hosting a large number of bacteria, which aid in the enzymatic breakdown of plant materials such as cellulose; in many species, it is considerably wider than the colon. In contrast, obligatory carnivores, whose diets contain little or no plant material, have a reduced cecum, which is often partially or wholly replaced by the vermiform appendix. Many fish have a number of small outpocketings, called pyloric ceca, along their intestine; despite the name they are not homologous with the cecum of amniotes, and their purpose is to increase the overall area of the digestive epithelium.[2] Some invertebrates, such as squid,[3] may also have structures with the same name, but these have no relationship with those of vertebrates." xsd:string {source="WP"} @@ -168103,8 +168206,12 @@ relationship: part_of UBERON:0000059 ! large intestine relationship: present_in_taxon NCBITaxon:40674 ! Mammalia relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/ad/Gray536.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb" xsd:anyURI property_value: external_definition "Organ with organ cavity which is continuous proximally with the cecum and distally terminates in the tip of the appendix. Examples: There is only one appendix[FMA:14542]." xsd:string {source="FMA:14542"} property_value: has_relational_adjective "appendiceal" xsd:string property_value: homology_notes "A comparative anatomical approach reveals three apparent morphotypes of the cecal appendix, as well as appendix-like structures in some species that lack a true cecal appendix. Cladistic analyses indicate that the appendix has evolved independently at least twice (at least once in diprotodont marsupials and at least once in Euarchontoglires), shows a highly significant (P < 0.0001) phylogenetic signal in its distribution, and has been maintained in mammalian evolution for 80 million years or longer.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001306", ontology="VHOG", source="DOI:10.1111/j.1420-9101.2009.01809.x Smith HF, Fisher RE, Everett ML, Thomas AD, Randal Bollinger R, Parker W, Comparative anatomy and phylogenetic distribution of the mammalian cecal appendix. Journal of Evolutionary Biology (2009)", source="http://bgee.unil.ch/"} @@ -168172,7 +168279,7 @@ xref: FMA:14545 xref: galen:AscendingColon xref: MA:0001541 xref: MAT:0000311 -xref: MESH:D044682 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D044682 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MIAA:0000311 xref: NCIT:C12265 xref: SCTID:362162009 @@ -168183,8 +168290,12 @@ relationship: continuous_with UBERON:0001157 ! transverse colon relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3b/Dickdarm-Schema.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb" xsd:anyURI property_value: external_ontology_notes "in MA, this is a subclass of colon" xsd:string {external_ontology="MA"} [Term] @@ -168203,7 +168314,7 @@ xref: FMA:14546 xref: galen:TransverseColon xref: MA:0001543 xref: MAT:0000312 -xref: MESH:D044684 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D044684 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MIAA:0000312 xref: NCIT:C12385 xref: SCTID:362163004 @@ -168214,8 +168325,12 @@ relationship: continuous_with UBERON:0001158 ! descending colon relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3b/Dickdarm-Schema.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb" xsd:anyURI [Term] id: UBERON:0001158 @@ -168233,7 +168348,7 @@ xref: FMA:14547 xref: galen:DescendingColon xref: MA:0001542 xref: MAT:0000313 -xref: MESH:D044683 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D044683 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MIAA:0000313 xref: NCIT:C12268 xref: SCTID:362165006 @@ -168244,8 +168359,12 @@ relationship: continuous_with UBERON:0001159 ! sigmoid colon relationship: develops_from UBERON:0001046 {source="Wikipedia"} ! hindgut relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/ca/Gray1223.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb" xsd:anyURI [Term] id: UBERON:0001159 @@ -168278,8 +168397,12 @@ relationship: continuous_with UBERON:0001052 ! rectum relationship: develops_from UBERON:0001046 {source="Wikipedia"} ! hindgut relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3b/Dickdarm-Schema.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb" xsd:anyURI [Term] id: UBERON:0001160 @@ -168617,7 +168740,7 @@ synonym: "biliary tract" RELATED [MA:0001273] xref: AAO:0011020 xref: EMAPA:35172 xref: FMA:14665 -xref: MESH:D001659 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D001659 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: SCTID:181267003 xref: UMLS:C0005423 {source="ncithesaurus:Biliary_Tract"} xref: Wikipedia:Biliary_tract @@ -168871,8 +168994,11 @@ relationship: supplies UBERON:0002115 ! jejunum relationship: supplies UBERON:0002116 ! ileum property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/68/Gray1099.png" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c0/Superior_mesenteric_a.gif" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI property_value: structure_notes "Origin: abdominal aorta; branches, inferior pancreaticoduodenal, jejunal, ileal, ileocolic, right colic, and middle colic arteries; distribution: small intestine, proximal half of colon" xsd:string {source="BTO"} [Term] @@ -168910,8 +169036,11 @@ relationship: supplies UBERON:0001052 ! rectum relationship: supplies UBERON:0001158 ! descending colon relationship: supplies UBERON:0001159 ! sigmoid colon property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e4/Gray538.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI [Term] id: UBERON:0001184 @@ -168951,8 +169080,11 @@ relationship: branching_part_of UBERON:0001516 {notes="dorsal aorta in Kardong", relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: supplies UBERON:0002113 ! kidney property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/da/Gray1120.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI property_value: editor_note "renal arteries vary widely even in humans. Sub-structures should be checked for taxon variability." xsd:string property_value: external_definition "Artery which supplies blood via branches to the gonads, oviducts, and kidneys.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010223", ontology="AAO", source="AAO:BJB"} property_value: external_definition "The renal arteries normally arise off the side of the abdominal aorta, immediately below the superior mesenteric artery, and supply the kidneys with blood. Each is directed across the crus of the diaphragm, so as to form nearly a right angle with the aorta. The renal arteries carry a large portion of total blood flow to the kidneys. Up to a third of total cardiac output can pass through the renal arteries to be filtered by the kidneys. The arterial supply of the kidneys is variable and there may be one or more renal arteries supplying each kidney. It is located above the renal vein. It has a radius of approximately 0.25cm, 0.26 cm at the root. The measured mean diameter can differ depending on the imaging method used. For example, the diameter was found to be 5.04 ± 0.74 mm using ultrasound, but 5.68 ± 1.19 mm using angiography. [WP,unvetted].[Wikipedia]" xsd:string {ontology="Wikipedia", source="Wikipedia:Renal_artery"} @@ -168978,8 +169110,11 @@ intersection_of: supplies UBERON:0004539 ! right kidney relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: supplies UBERON:0004539 ! right kidney property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/da/Gray1120.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI [Term] id: UBERON:0001186 @@ -169000,8 +169135,11 @@ intersection_of: UBERON:0001184 ! renal artery intersection_of: supplies UBERON:0004538 ! left kidney relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: supplies UBERON:0004538 ! left kidney -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI [Term] id: UBERON:0001187 @@ -169206,8 +169344,12 @@ relationship: part_of RO:0002577 ! system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: supplies UBERON:0002106 ! spleen property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a2/Gray1188.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI property_value: seeAlso "https://github.com/obophenotype/uberon/issues/268" xsd:anyURI [Term] @@ -169256,8 +169398,11 @@ relationship: part_of RO:0002577 ! system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: supplies UBERON:0001157 ! transverse colon property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/cb/Gray537.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI [Term] id: UBERON:0001197 @@ -169287,8 +169432,6 @@ relationship: supplies UBERON:0001153 ! caecum relationship: supplies UBERON:0001154 ! vermiform appendix relationship: supplies UBERON:0002116 ! ileum property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/ad/Gray536.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI [Term] id: UBERON:0001198 @@ -169834,7 +169977,8 @@ relationship: drains UBERON:0000059 ! large intestine relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: tributary_of UBERON:0003713 {source="FMA/obol"} ! splenic vein property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI [Term] id: UBERON:0001216 @@ -169896,8 +170040,11 @@ relationship: part_of RO:0002577 ! system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: tributary_of UBERON:0001138 ! superior mesenteric vein property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI [Term] id: UBERON:0001219 @@ -169925,8 +170072,11 @@ relationship: drains UBERON:0002116 ! ileum relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: tributary_of UBERON:0001138 ! superior mesenteric vein property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI [Term] id: UBERON:0001220 @@ -170005,8 +170155,12 @@ is_a: UBERON:0000056 ! ureter intersection_of: UBERON:0000056 ! ureter intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism relationship: in_right_side_of UBERON:0000468 ! multicellular organism -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Ureter_R.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Ureter_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-female-right/v1.0/assets/VH_F_Ureter_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-female-right/v1.1/assets/VH_F_Ureter_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-male-right/v1.0/assets/VH_M_Ureter_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-male-right/v1.1/assets/VH_M_Ureter_R.glb" xsd:anyURI property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] @@ -170023,8 +170177,12 @@ is_a: UBERON:0000056 ! ureter intersection_of: UBERON:0000056 ! ureter intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism relationship: in_left_side_of UBERON:0000468 ! multicellular organism -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Ureter_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Ureter_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-female-left/v1.0/assets/VH_F_Ureter_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-female-left/v1.1/assets/VH_F_Ureter_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-male-left/v1.0/assets/VH_M_Ureter_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-male-left/v1.1/assets/VH_M_Ureter_L.glb" xsd:anyURI property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] @@ -170061,6 +170219,14 @@ relationship: contributes_to_morphology_of UBERON:0000056 ! ureter relationship: part_of UBERON:0002113 {source="MA"} ! kidney relationship: part_of UBERON:0036295 ! renal pelvis/ureter relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/c/c0/Illu_kidney2.jpg" xsd:anyURI [Term] @@ -170092,10 +170258,18 @@ relationship: contributes_to_morphology_of UBERON:0002113 ! kidney relationship: part_of UBERON:0002113 ! kidney relationship: part_of UBERON:0008987 {source="FMA"} ! renal parenchyma relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.2/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.2/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/6/69/Illu_kidney.jpg" xsd:anyURI property_value: structure_notes "In the adult metanephros, it forms a continuous smooth outer zone with a number of projections that extend down between the pyramids. It contains the renal corpuscles and the renal tubules except for parts of the loop of Henle which descend into the renal medulla. It also contains blood vessels and cortical collecting ducts. The renal cortex is the part of the kidney where ultrafiltration occurs.[WP]" xsd:string @@ -170114,6 +170288,14 @@ xref: MA:0001644 xref: SCTID:1106008 xref: Wikipedia:Major_calyx is_a: UBERON:0006517 ! kidney calyx +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png" xsd:anyURI [Term] @@ -170131,6 +170313,14 @@ xref: MA:0001645 xref: SCTID:26293004 xref: Wikipedia:Minor_calyx is_a: UBERON:0006517 ! kidney calyx +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png" xsd:anyURI [Term] @@ -170156,10 +170346,16 @@ relationship: contributes_to_morphology_of UBERON:0001224 ! renal pelvis relationship: part_of UBERON:0001224 ! renal pelvis relationship: part_of UBERON:0001294 ! inner medulla of kidney relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Ureter_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Ureter_R.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png" xsd:anyURI [Term] @@ -170707,7 +170903,7 @@ synonym: "proctodeum" RELATED [] xref: BTO:0001680 xref: CALOHA:TS-2005 xref: EV:0100082 -xref: FBbt:00047153 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00047153 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:15711 xref: GAID:312 xref: galen:Anus @@ -170778,8 +170974,10 @@ relationship: attaches_to UBERON:0002107 ! liver relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0002095 {source="FMA-modified"} ! mesentery relationship: part_of UBERON:0005626 {source="MA"} ! ventral mesogastrium -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb" xsd:anyURI property_value: external_ontology_notes "in FMA this is a subclass of mesentery. In MA it is a subclass of ligament, we infer and assert this is a nonskeletal ligament" xsd:string {external_ontology="FMA"} [Term] @@ -170807,8 +171005,12 @@ intersection_of: part_of UBERON:0002106 ! spleen relationship: part_of UBERON:0002106 ! spleen relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a2/Gray1188.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spleen.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spleen.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-female/v1.0/assets/VH_F_Spleen.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-female/v1.1/assets/VH_F_Spleen.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-female/v1.2/assets/VH_F_Spleen.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-male/v1.0/assets/VH_M_Spleen.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-male/v1.1/assets/VH_M_Spleen.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-male/v1.2/assets/VH_M_Spleen.glb" xsd:anyURI [Term] id: UBERON:0001249 @@ -170841,8 +171043,8 @@ relationship: part_of UBERON:0001959 {source="CL:tm", source="MA"} ! white pulp relationship: part_of UBERON:0002106 ! spleen relationship: part_of UBERON:0006561 {source="FMA"} ! non-lymphatic part of lymphoid system relationship: part_of UBERON:1000024 {source="FMA"} ! parenchyma of spleen -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0001250 @@ -171008,8 +171210,10 @@ relationship: located_in UBERON:0002323 ! coelemic cavity lumen relationship: never_in_taxon NCBITaxon:8782 {editor="https://orcid.org/0000-0003-3308-6245", id="GOTAX:0010073", source="https://github.com/obophenotype/uberon/issues/454"} ! Aves relationship: part_of UBERON:0001556 {source="FMA"} ! lower urinary tract relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Urinary_Bladder.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Urinary_Bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.0/assets/VH_F_Urinary_Bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.1/assets/VH_F_Urinary_Bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.0/assets/VH_M_Urinary_Bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.1/assets/VH_M_Urinary_Bladder.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/3/30/Urinary_system.svg" xsd:anyURI property_value: external_definition "A saccular organ in which urine accumulates before discharge from the body. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Glossary_G-29, Grande_L, Liem_KF, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000740", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: external_definition "Anatomical structure which consists of a membranous sac used to temporarily store urine until it is excreted from the body.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000623", ontology="AAO", source="AAO:BJB"} @@ -171074,8 +171278,10 @@ is_a: UBERON:0004120 ! mesoderm-derived structure relationship: contributes_to_morphology_of UBERON:0001255 ! urinary bladder relationship: part_of UBERON:0006082 ! fundus of urinary bladder relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Urinary_Bladder.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Urinary_Bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.0/assets/VH_F_Urinary_Bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.1/assets/VH_F_Urinary_Bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.0/assets/VH_M_Urinary_Bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.1/assets/VH_M_Urinary_Bladder.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/5/57/Illu_bladder.jpg" xsd:anyURI property_value: development_notes "Embryologically, the trigone of the bladder is derived from the caudal end of mesonephric ducts, which is of mesodermal origin (the rest of the bladder is endodermal). In the female the mesonephric ducts regresses, causing the trigone to be less prominent, but still present" xsd:string {source="WP"} property_value: function_notes "The area is very sensitive to expansion and once stretched to a certain degree, the urinary bladder signals the brain of its need to empty. The signals become stronger as the bladder continues to fill." xsd:string @@ -171238,7 +171444,7 @@ synonym: "acinus pancreaticus" EXACT OMO:0003011 [FMA:16011] synonym: "pancreas acinus" EXACT [] synonym: "pancreatic acinar" RELATED [] synonym: "pancreatic acini" RELATED OMO:0003004 [] -xref: BTO:0000028 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0000028 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EMAPA:35651 xref: FMA:16011 xref: MA:0002417 @@ -171299,8 +171505,12 @@ relationship: has_part UBERON:0000017 {gci_relation="part_of", gci_filler="NCBIT relationship: located_in UBERON:0002323 ! coelemic cavity lumen relationship: only_in_taxon NCBITaxon:7742 {source="PMID:16417468"} ! Vertebrata relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pancreas.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.0/assets/VH_F_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.1/assets/VH_F_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.2/assets/3d-vh-f-pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.0/assets/VH_M_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.1/assets/VH_M_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.2/assets/3d-vh-m-pancreas.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/7/7e/Blausen_0699_PancreasAnatomy2.png" xsd:anyURI property_value: external_definition "Organ which secretes a fluid containing enzymes that aid in the digestion of food.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010112", ontology="AAO", source="AAO:BJB"} property_value: function_notes "The mature pancreas of higher vertebrates and mammals comprises two major functional units: the exocrine pancreas, which is responsible for the production of digestive enzymes to be secreted into the gut lumen, and the endocrine pancreas, which has its role in the synthesis of several hormones with key regulatory functions in food uptake and metabolism. The exocrine portion constitutes the majority of the mass of the pancreas, and contains only two different cell types, the secretory acinar cells and the ductular cells. The endocrine portion, which comprises only 1-2% of the total mass, contains five different cell types, which are organized into mixed functional assemblies referred to as the islets of Langerhans" xsd:string {source="PMID:16417468"} @@ -171354,6 +171564,7 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0001267 name: femoral nerve def: "The femoral nerve, the largest branch of the lumbar plexus, arises from the ventral divisions of the second, third, and fourth lumbar nerves. It descends through the fibers of the Psoas major, emerging from the muscle at the lower part of its lateral border, and passes down between it and the Iliacus, behind the iliac fascia; it then runs beneath the inguinal ligament, into the thigh, and splits into an anterior and a posterior division. Under the inguinal ligament, it is separated from the femoral artery by a portion of the Psoas major. [WP,unvetted]." [Wikipedia:Femoral_nerve] +subset: human_reference_atlas subset: uberon_slim synonym: "anterior crural nerve" EXACT [] synonym: "nervus femoralis" RELATED OMO:0003011 [Wikipedia:Femoral_nerve] @@ -171372,6 +171583,7 @@ xref: Wikipedia:Femoral_nerve is_a: UBERON:0003431 ! leg nerve relationship: innervates UBERON:0004482 ! musculature of lower limb relationship: part_of UBERON:0000978 ! leg +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7c/Gray823.png" xsd:anyURI [Term] @@ -171384,7 +171596,7 @@ xref: BTO:0001031 xref: EMAPA:35683 xref: FMA:16515 xref: MA:0002531 -xref: MESH:D001202 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D001202 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: ncithesaurus:Peritoneal_Fluid xref: Wikipedia:Peritoneal_fluid is_a: UBERON:0007779 ! transudate @@ -171438,8 +171650,12 @@ disjoint_from: UBERON:0002355 ! pelvic region of trunk relationship: has_part UBERON:0001274 ! ischium relationship: has_part UBERON:0001275 ! pubis relationship: has_part UBERON:0003690 ! fused sacrum -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.0/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.1/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.2/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.0/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.1/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.2/assets/VH_M_Pelvis.glb" xsd:anyURI property_value: editor_note "TODO add taxon-specific part of relations connecting sub-structures to this." xsd:string property_value: external_ontology_notes "in FMA, this is part of the axial skeletal system" xsd:string {external_ontology="FMA"} @@ -171541,13 +171757,17 @@ relationship: in_lateral_side_of UBERON:0007832 ! pelvic girdle skeleton relationship: never_in_taxon NCBITaxon:32443 {source="Wikipedia"} ! Teleostei relationship: part_of UBERON:0001272 {source="FMA"} ! innominate bone relationship: part_of UBERON:0007832 {source="VSAO"} ! pelvic girdle skeleton -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb" xsd:anyURI +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.0/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.1/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.2/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.0/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.1/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.2/assets/VH_M_Pelvis.glb" xsd:anyURI property_value: external_definition "Paired, rodlike endochondral bones that constitute the anterior pelvic girdle.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000772", ontology="AAO", source="AAO:LAP"} property_value: external_ontology_notes "this is_a hip bone in MA." xsd:string {external_ontology="MA"} property_value: has_relational_adjective "iliac" xsd:string -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly property_value: taxon_notes "All reptiles have an ilium except snakes, although some snake species have a tiny bone which is considered to be an ilium" xsd:string {source="WP"} [Term] @@ -171585,8 +171805,12 @@ relationship: in_lateral_side_of UBERON:0007832 ! pelvic girdle skeleton relationship: part_of UBERON:0001272 ! innominate bone relationship: part_of UBERON:0007832 {source="VSAO"} ! pelvic girdle skeleton property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/29/Illu_pelvic_girdle.jpg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.0/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.1/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.2/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.0/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.1/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.2/assets/VH_M_Pelvis.glb" xsd:anyURI property_value: external_definition "Paired bones of endochondral origin that constitute the posterior elements of the pelvic girdle. They are synostotically fused to each other and form the posterior part of the acetabulum.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000860", ontology="AAO", source="AAO:LAP"} property_value: external_ontology_notes "this is_a hip bone in MA; in FMA it is a zone of bone organ." xsd:string {external_ontology="MA"} property_value: has_relational_adjective "ischial" xsd:string @@ -171623,12 +171847,16 @@ relationship: develops_from UBERON:0010718 ! pubic cartilage element relationship: in_lateral_side_of UBERON:0007832 ! pelvic girdle skeleton relationship: part_of UBERON:0001272 {source="FMA"} ! innominate bone relationship: part_of UBERON:0007832 {source="VSAO"} ! pelvic girdle skeleton -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb" xsd:anyURI +property_value: dc:contributor https://github.com/alex-dececchi +property_value: dc:contributor https://github.com/cmungall +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.0/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.1/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.2/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.0/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.1/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.2/assets/VH_M_Pelvis.glb" xsd:anyURI property_value: external_definition "Paired, cartilaginous (ocassionally calcified) elements that form the ventral portion of the pelvic girdle. Each is located ventral to the acetabulum between the anteroventral margin of the ischium and the posteroventral margin of the illium. When the element calcifies or ossifies, its articulation with adjacent elements is difficult to distinguish. Both pubes are synchondrotically fused to one another.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000861", ontology="AAO", source="AAO:LAP"} property_value: external_ontology_notes "isa bone zone in FMA" xsd:string {external_ontology="FMA"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/alex-dececchi -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall [Term] id: UBERON:0001276 @@ -171903,10 +172131,18 @@ xref: Wikipedia:Renal_column is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:8410073 ! medullary region of kidney relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.2/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.2/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/c/c0/Illu_kidney2.jpg" xsd:anyURI [Term] @@ -172484,7 +172720,8 @@ is_a: UBERON:0003889 ! fallopian tube intersection_of: UBERON:0003889 ! fallopian tube intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism relationship: in_right_side_of UBERON:0000468 ! multicellular organism -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Fallopian_Tube_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/fallopian-tube-female-right/v1.0/assets/VH_F_Fallopian_Tube_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/fallopian-tube-female-right/v1.1/assets/VH_F_Fallopian_Tube_R.glb" xsd:anyURI property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI property_value: taxon_notes "non-functional in monotremes[ISBN:978-0226870137]" xsd:string @@ -172504,7 +172741,8 @@ is_a: UBERON:0003889 ! fallopian tube intersection_of: UBERON:0003889 ! fallopian tube intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism relationship: in_left_side_of UBERON:0000468 ! multicellular organism -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Fallopian_Tube_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/fallopian-tube-female-left/v1.0/assets/VH_F_Fallopian_Tube_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/fallopian-tube-female-left/v1.1/assets/VH_F_Fallopian_Tube_L.glb" xsd:anyURI property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] @@ -172696,7 +172934,7 @@ is_a: UBERON:0010260 ! umbilical blood vessel relationship: overlaps UBERON:0002331 {source="cjm"} ! umbilical cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray502.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Placenta.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/placenta-full-term-female/v1.0/assets/VH_F_Placenta.glb" xsd:anyURI property_value: editor_note "todo - compare with EHDAA2. Check embryonic vs extraembryonic, developmental relationships" xsd:string property_value: seeAlso "https://github.com/obophenotype/uberon/issues/328" xsd:anyURI @@ -172840,7 +173078,8 @@ is_a: UBERON:0005610 {source="MA"} ! iliac vein relationship: connected_to UBERON:0001139 ! common iliac vein relationship: drains UBERON:0002103 ! hindlimb relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/6/65/Iliac_veins.gif" xsd:anyURI [Term] @@ -172868,8 +173107,11 @@ relationship: connected_to UBERON:0001139 ! common iliac vein relationship: drains UBERON:0005179 ! pelvic region element relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/cb/Internaliliacv.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI [Term] id: UBERON:0001318 @@ -173123,10 +173365,10 @@ is_a: UBERON:0009912 ! anatomical lobe intersection_of: UBERON:0009912 ! anatomical lobe intersection_of: part_of UBERON:0002367 ! prostate gland relationship: part_of UBERON:0002367 ! prostate gland -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/RDruzinsky -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tfhayamizu -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/uberon +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/RDruzinsky +property_value: dc:contributor https://github.com/tfhayamizu +property_value: dc:contributor https://github.com/uberon property_value: taxon_notes "Anatomically, the human prostate gland is located between the base of the bladder and the rectum, and it completely surrounds the proximal urethra (Fig. 1A). It is a single alobular structure with central (CZ), peripheral (PZ) and transitional (TZ) zones. In contrast, the mouse prostate is not merged into one compact anatomical structure. It comprises four paired lobes situated circumferentially around the urethra, immediately caudal to the urinary bladder-namely, anterior (AP), dorsal (DP), lateral (LP), and ventral (VP) prostate (Fig. 1B). Often, the dorsal and the lateral lobes are thought of in combination and referred to as the dorsolateral (DLP) lobe as they share a ductal system. The mouse AP is considered analogous to the human CZ, which is rarely a site of neoplastic transformation in humans. The mouse DLP is considered most similar to the human PZ, which is the zone in which most carcinomas arise (Xue et al. 1997). These analogies, however, are limited as they are based solely on descriptive data and need to be re-evaluated using molecular techniques before the relationship between specific mouse prostate lobes and the human prostate zones is definitively asserted (Abate-Shen & Shen 2000). The mouse VP does not have a human homologue, and the human TZ does not have a murine homologue" xsd:string {source="PMID:15163300", source="https://github.com/obophenotype/uberon/issues/665"} [Term] @@ -173249,7 +173491,6 @@ is_a: UBERON:0000057 ! urethra intersection_of: UBERON:0000057 ! urethra intersection_of: part_of UBERON:0003101 ! male organism relationship: part_of UBERON:0003101 ! male organism -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Urethra.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/c/cb/Female_anatomy.png" xsd:anyURI [Term] @@ -173301,7 +173542,7 @@ relationship: located_in UBERON:0002367 {source="FMA"} ! prostate gland relationship: part_of UBERON:0001333 {source="FMA", source="MA"} ! male urethra relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray1142.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Urethra.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb" xsd:anyURI [Term] id: UBERON:0001336 @@ -173604,7 +173845,7 @@ xref: EMAPA:35926 xref: FMA:20117 xref: MA:0000058 xref: MAT:0000199 -xref: MESH:D052436 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D052436 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MIAA:0000199 xref: NCIT:C33889 xref: UMLS:C1704223 {source="ncithesaurus:White_Adipose_Tissue"} @@ -173701,8 +173942,12 @@ relationship: develops_from UBERON:0007144 ! embryonic post-anal tail relationship: part_of UBERON:0001270 {source="FMA"} ! bony pelvis relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/91/Gray100.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.0/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.1/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.2/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.0/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.1/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.2/assets/VH_M_Pelvis.glb" xsd:anyURI property_value: external_definition "Small, bony element consisting of several fused, rudimentary caudal vertebrae; near metamorphosis the hypochord fuses to the coccyx, thereby forming the urostyle.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000731", ontology="AAO", source="AAO:Pugener_2002", source="AAO:Pugener_and_Maglia_2008"} property_value: has_relational_adjective "coccygeal" xsd:string property_value: taxon_notes "In humans: The coccyx, commonly referred to as the tailbone, is the final segment of the human vertebral column. Comprising three to five separate or fused vertebrae (the coccygeal vertebrae) below the sacrum, it is attached to the sacrum by a fibrocartilaginous joint, the sacrococcygeal symphysis, which permits limited movement between the sacrum and the coccyx." xsd:string {source="WP,unvetted"} @@ -174405,7 +174650,7 @@ xref: EMAPA:19146 xref: FMA:22428 xref: galen:QuadricepsFemoris xref: MA:0002363 -xref: MESH:D052097 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D052097 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C33441 xref: SCTID:181669009 xref: UMLS:C0224440 {source="ncithesaurus:Quadriceps_Muscle_of_the_Thigh"} @@ -175647,12 +175892,12 @@ xref: UMLS:C0223724 {source="ncithesaurus:Scaphoid_Bone"} xref: Wikipedia:Scaphoid is_a: UBERON:0001480 ! proximal carpal bone relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/50/Carpus.png" xsd:anyURI property_value: editor_note "TODO - check AAO placement; in rodents this is fused with the lunate to make the scapholunate" xsd:string property_value: external_definition "One of two element that constitute the basal row of carpals. It articulates proximally with the radius, mesially with the ulnare (or pars intermedia of the ulnare when the ulnare is fused to the intermedium) and distally with the centrale (also recognized by some authors as element Y). This element originates from one or two condensation centers. Occasionally it may fuse to carpal 5(4), the ulnare, or other elements.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000790", ontology="AAO", source="AAO:LAP"} property_value: external_definition "the bone of the hand located at the radial side of the carpus and which articulates with the radius, trapezium, trapezoideum, capitate, and lunate bones" xsd:string {source="MP:0010775,MGI:llw2"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly property_value: terminology_notes "In reptiles, birds, and amphibians, this bone is instead commonly referred to as the radiale, because of its articulation with the radius[WP]" xsd:string [Term] @@ -175688,9 +175933,9 @@ is_a: UBERON:0001480 {source="FMA"} ! proximal carpal bone relationship: connected_to UBERON:0001427 ! radiale relationship: connected_to UBERON:0002445 ! ulnare relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/50/Carpus.png" xsd:anyURI -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly property_value: taxon_notes "articulating with the ulnare and the radiale[VSAO]. human articulations: radius proximally capitate and hamate distally scaphoid laterally triangular medially" xsd:string [Term] @@ -175714,10 +175959,10 @@ xref: Wikipedia:Pisiform_bone is_a: UBERON:0001480 {source="FMA", source="MA"} ! proximal carpal bone is_a: UBERON:0007997 ! sesamoid bone of manus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/50/Carpus.png" xsd:anyURI property_value: editor_note "check: accessory carpal" xsd:string -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly [Term] id: UBERON:0001430 @@ -176075,7 +176320,7 @@ xref: EMAPA:35250 xref: FMA:24018 xref: galen:CorticalBone xref: MA:0001461 -xref: MESH:D000071538 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D000071538 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C52714 xref: SCTID:361728003 xref: UMLS:C0222661 {source="ncithesaurus:Cortical_Bone"} @@ -176083,8 +176328,12 @@ xref: Wikipedia:Compact_bone is_a: UBERON:0002481 ! bone tissue disjoint_from: UBERON:0002483 ! trabecular bone tissue relationship: part_of UBERON:0002482 ! lamellar bone -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.0/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.1/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.2/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.0/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.1/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.2/assets/VH_M_Pelvis.glb" xsd:anyURI [Term] id: UBERON:0001440 @@ -176189,8 +176438,8 @@ disjoint_from: UBERON:0001445 {source="lexical"} ! skeleton of pes relationship: part_of UBERON:0001440 {source="EHDAA2"} ! forelimb skeleton relationship: part_of UBERON:0002398 ! manus relationship: skeleton_of UBERON:0002398 ! manus -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Skeleton-partonomy-Design-Pattern" xsd:anyURI [Term] @@ -176269,8 +176518,8 @@ intersection_of: skeleton_of UBERON:0002387 ! pes relationship: part_of UBERON:0001441 {source="EHDAA2"} ! hindlimb skeleton relationship: part_of UBERON:0002387 ! pes relationship: skeleton_of UBERON:0002387 ! pes -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Skeleton-partonomy-Design-Pattern" xsd:anyURI [Term] @@ -176457,11 +176706,11 @@ relationship: composed_primarily_of UBERON:0002481 ! bone tissue relationship: develops_from UBERON:0010842 ! calcaneum cartilage element relationship: postaxialmost_part_of UBERON:0009879 ! tarsal skeleton relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +property_value: dc:contributor https://github.com/alex-dececchi +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/a/a9/Subtalar_Joint.PNG" xsd:anyURI property_value: has_relational_adjective "calcaneal" xsd:string -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/alex-dececchi -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly property_value: taxon_notes "synonymous with the fibulare of basal tetrapods." xsd:string [Term] @@ -177170,7 +177419,7 @@ xref: EMAPA:35532 xref: FMA:30315 xref: MA:0000138 xref: MAT:0000443 -xref: MESH:D042601 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D042601 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C33038 xref: SCTID:279089004 xref: UMLS:C0229889 {source="ncithesaurus:Lymphatic_Vessel"} @@ -177864,8 +178113,12 @@ relationship: has_developmental_contribution_from UBERON:0005432 ! aortic sac relationship: part_of UBERON:0001515 ! thoracic aorta relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI [Term] id: UBERON:0001497 @@ -178153,8 +178406,12 @@ relationship: part_of UBERON:0001515 ! thoracic aorta relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: curator_notes "Do not confuse with aortic arch" xsd:string property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI property_value: external_definition "The curving portion between the ascending aorta and the descending aorta, giving rise to the brachiocephalic trunk, the left common carotid artery, and the left subclavian artery. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001196", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/arch+of+aorta"} property_value: homology_notes "The double systemic arch arches (left and right) present in amphibians and reptiles become reduced to a single systemic arch - the right in birds, the left in mammals.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001196", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.460 and p.461 Figure 12.20", source="http://bgee.unil.ch/"} property_value: taxon_notes "birds have right aortic arch, mammals left." xsd:string @@ -178295,8 +178552,12 @@ relationship: part_of UBERON:0000947 {source="FMA"} ! aorta relationship: part_of UBERON:0001009 ! circulatory system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI property_value: development_notes "results from fusion of left and right dorsal aortae" xsd:string [Term] @@ -178671,8 +178932,12 @@ relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0007204 ! brachiocephalic vasculature relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI [Term] id: UBERON:0001530 @@ -178904,8 +179169,12 @@ is_a: UBERON:0001530 {source="FMA"} ! common carotid artery plus branches relationship: connected_to UBERON:0001508 ! arch of aorta relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI property_value: external_ontology_notes "placement of the MA class here is not strictly correct, as the MA class does not include the branches" xsd:string [Term] @@ -179299,11 +179568,11 @@ xref: BTO:0000545 xref: EHDAA2:0000726 xref: EHDAA:518 xref: EMAPA:16247 -xref: FBbt:00003125 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003125 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:45615 xref: galen:AlimentaryTract xref: MA:0000917 -xref: MESH:D041981 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D041981 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C34082 xref: TAO:0000112 xref: TGMA:0001819 @@ -179815,12 +180084,12 @@ relationship: develops_from UBERON:0011332 ! extrinsic tongue pre-muscle mass relationship: immediate_transformation_of UBERON:0011332 ! extrinsic tongue pre-muscle mass relationship: innervated_by UBERON:0001650 {notes="check palatoglossus", source="Wikipedia"} ! hypoglossal nerve relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/dosumis +property_value: dc:contributor https://github.com/mellybelly +property_value: dc:contributor https://github.com/RDruzinsky property_value: function_notes "main functions are altering the tongue's position allowing for protrusion, retraction, and side-to-side movement" xsd:string {source="WP"} property_value: homology_notes "The lamprey head contains another group of muscles, the epi- and hypo-branchial muscles (EBM and HBM), derivatives of anterior trunk myotomes. (...) The origin and the migration pattern of HBM precursors are very similar to that of the gnathostome MPP, especially to that of the tongue muscle precursors. Other evidence of homology of lamprey HBM to the gnathostome tongue muscle is that HBM is innervated by the nerve termed the hypoglossal nerve based on its morphological position associated with the head/trunk interface. (...) The HBM-specific expression of the LampPax3/7 gene is consistent with the homology of this muscle to the gnathostome tongue muscle, or to the hypobranchial series as a whole (including the infrahyoid and possibly the diaphragm in mammals).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000825", ontology="VHOG", source="DOI:10.1002/dvdy.20587 Kusakabe R, Kuratani S, Evolution and developmental patterning of the vertebrate skeletal muscles: perspectives from the lamprey. Developmental Dynamics (2005)", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/dosumis -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/RDruzinsky property_value: structure_notes "All intrinsic and extrinsic muscles of the tongue are supplied by the hypoglossal nerve (CN XII), except for one of the extrinsic muscles, palatoglossus, which is innervated by the Vagus nerve CN X of the pharyngeal plexus." xsd:string {source="WP"} [Term] @@ -180105,8 +180374,12 @@ relationship: connected_to UBERON:0001508 ! arch of aorta relationship: in_left_side_of UBERON:0000468 ! multicellular organism relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI property_value: development_notes "arises from left intersegmental 6th artery in the region of the 6th -7th cervical segment in humans" xsd:string property_value: taxon_notes "in humans, branches off the arch of aorta" xsd:string @@ -180577,7 +180850,7 @@ xref: EHDAA:5729 xref: EMAPA:18234 xref: FMA:49033 xref: MA:0001271 -xref: MESH:D009801 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D009801 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: SCTID:181150000 xref: TAO:0000511 xref: VHOG:0000549 @@ -181112,8 +181385,9 @@ relationship: part_of RO:0002577 ! system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: axiom_lost_from_external_ontology "relationship loss: part_of internal carotid (AAO:0010219)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010497", ontology="AAO"} property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray514.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI property_value: external_definition "Part of internal carotid which carries blood via branches to the eye, the eye muscles, and eyelids.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010497", ontology="AAO", source="AAO:BJB"} [Term] @@ -181266,8 +181540,12 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: supplies UBERON:0000948 ! heart relationship: supplies UBERON:0002349 ! myocardium property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/46/Gray492.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI [Term] id: UBERON:0001626 @@ -181291,8 +181569,12 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: supplies UBERON:0000948 ! heart relationship: supplies UBERON:0002349 ! myocardium property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/50/Gray495.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI [Term] id: UBERON:0001627 @@ -181630,6 +181912,8 @@ is_a: UBERON:0003509 ! arterial blood vessel relationship: channels_from UBERON:0000948 ! heart relationship: fma_set_term FMA:63812 relationship: part_of UBERON:0004572 ! arterial system +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI property_value: editor_note "Note that in FMA an artery is a tree, whereas AEO/JB defines it as a tube; FMA includes a separate class for what it calls the trunk. Classification in this ontology may currently (Jan 2012) represent a mix of both schemes, although we are gradually revising in the direction of the AEO scheme." xsd:string property_value: external_definition "Part of the circulatory system composed of blood vessels which carry oxygenated blood away from the heart to the rest of the body.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010211", ontology="AAO", source="AAO:BJB"} property_value: external_ontology_notes "Some arthropods have primitive arterial systems but this term refers to arteries in a true closed circulatory system." xsd:string @@ -181680,6 +181964,8 @@ relationship: channel_for UBERON:0013756 ! venous blood relationship: channels_from UBERON:0001982 ! capillary relationship: fma_set_term FMA:63814 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c2/Venous_system_en.svg" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI property_value: editor_note "TODO - check with MA - vein vs venous blood vessel" xsd:string property_value: external_definition "Part of the circulatory system composed of blood vessels which carry blood from other organs, tissues, and cells to the heart.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010212", ontology="AAO", source="AAO:BJB"} property_value: has_relational_adjective "venous" xsd:string @@ -181715,8 +182001,12 @@ relationship: overlaps UBERON:0002107 ! liver relationship: part_of UBERON:0010194 ! hepatic portal system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI property_value: homology_notes "Adults of all vertebrates lose the vitelline veins and establish a single large hepatic portal vein (...) by the selective retention of parts of the left and right subintestinals and of several anastomoses that occur between them within and just posterior to the liver.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000642", ontology="VHOG", source="ISBN:978-0471090588 Hildebrand M, Analysis of vertebrate structure (1983) p.265", source="http://bgee.unil.ch/"} property_value: taxon_notes "In humans A vein in the abdominal cavity that drains blood from the gastrointestinal tract and spleen. It is usually formed by the confluence of the superior mesenteric and splenic veins, and also receives blood from the inferior mesenteric, gastric, and cystic veins. The hepatic portal vein is a major component of the hepatic portal system, one of the main portal venous systems in the body. Conditions involving the hepatic portal vein cause considerable illness and death. An important example of such a condition is elevated blood pressure in the hepatic portal vein. This condition, called portal hypertension, is a major complication of cirrhosis worldwide. [WP,unvetted]" xsd:string @@ -181758,6 +182048,8 @@ relationship: indirectly_supplies UBERON:0002106 {source="ISBN:0073040584"} ! sp relationship: indirectly_supplies UBERON:0002107 {source="ISBN:0073040584"} ! liver relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/65/Gray532.png" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI [Term] id: UBERON:0001641 @@ -181796,7 +182088,7 @@ synonym: "sinus sagittalis superior" RELATED OMO:0003011 [Wikipedia:Superior_sag xref: EMAPA:18636 xref: FMA:50767 xref: MA:0001867 -xref: MESH:D054063 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D054063 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C12515 xref: SCTID:362075006 xref: UMLS:C0226859 {source="ncithesaurus:Superior_Sagittal_Sinus"} @@ -181959,7 +182251,6 @@ xref: EHDAA:3738 xref: EMAPA:17576 xref: FMA:50866 xref: GAID:726 -xref: HBA:9322 xref: MA:0001100 xref: MBA:901 xref: MESH:D014276 @@ -182216,7 +182507,6 @@ xref: EHDAA:3733 xref: EMAPA:17268 xref: FMA:50870 xref: GAID:827 -xref: HBA:9334 xref: MA:0001093 xref: MBA:808 xref: MESH:D005930 @@ -182273,7 +182563,6 @@ xref: EHDAA:2859 xref: EMAPA:17269 xref: FMA:50871 xref: GAID:828 -xref: HBA:9343 xref: MA:0001094 xref: MBA:813 xref: MESH:D007002 @@ -182328,8 +182617,12 @@ relationship: part_of RO:0002577 ! system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: supplies UBERON:0002167 ! right lung property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray504.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png" xsd:anyURI property_value: editor_note "TODO - add class 'pulmonary artery tree organ'" xsd:string @@ -182358,8 +182651,12 @@ relationship: part_of RO:0002577 ! system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: supplies UBERON:0002168 ! left lung property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray504.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png" xsd:anyURI property_value: editor_note "TODO - add class 'pulmonary artery tree organ'" xsd:string @@ -182877,12 +183174,12 @@ intersection_of: extends_fibers_into UBERON:0001645 ! trigeminal nerve relationship: develops_from UBERON:0006304 ! future trigeminal ganglion relationship: extends_fibers_into UBERON:0001645 ! trigeminal nerve relationship: immediate_transformation_of UBERON:0006304 {source="Bgee:AN"} ! future trigeminal ganglion +property_value: dc:contributor https://github.com/ANiknejad +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/69/Gray776.png" xsd:anyURI property_value: editor_note "consider renaming this 'trigeminal ganglion complex'. The complex may be fused (amniotes) partially fused (xenopus) or separate (sharks)" xsd:string property_value: external_definition "A prominent collection of touch-sensory neurons of the trigeminal or fifth cranial nerve, positioned beside the brain between the eye and the ear. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000295", ontology="TAO", source="ZFIN:curator"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/ANiknejad -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly property_value: taxon_notes "In Xenopus, the profundal and the trigeminal ganglia are separate distally but fused at their proximal end as they condense around NF stage 24." xsd:string {source="PMID:21452441", source="XAO:0004093"} [Term] @@ -183042,6 +183339,7 @@ subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core +synonym: "ectethmoid" RELATED [UBERON:3010146] synonym: "infraorbital 1" RELATED SENSU [VHOG:0001149, ZFA:0000223] synonym: "lachrymal bone" EXACT [] synonym: "lachrymal bone - infraorbital 1" RELATED [VHOG:0001149] @@ -183185,7 +183483,7 @@ xref: EMAPA:25111 xref: FMA:52747 xref: GAID:225 xref: MA:0001497 -xref: MESH:D015050 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D015050 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: MFMO:0000146 xref: SCTID:272683001 xref: VHOG:0001638 @@ -183324,12 +183622,12 @@ relationship: composed_primarily_of UBERON:0002481 ! bone tissue relationship: develops_from UBERON:0003099 {source="PMID:11237469", source="https://github.com/obophenotype/uberon/wiki/The-neural-crest"} ! cranial neural crest relationship: part_of UBERON:0001756 {source="MA"} ! middle ear relationship: part_of UBERON:0008895 {source="PMID:11523816"} ! splanchnocranium +property_value: dc:contributor https://github.com/cmungall property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b0/Illu_auditory_ossicles.jpg" xsd:anyURI property_value: development_notes "Studies have shown that ear bones in mammal embryos are attached to the dentary, which is part of the jaw. These are ossified portions of cartilage -- called Meckel's cartilage -- that are attached to the jaw. As the embryo develops, the cartilage hardens to form bone. Later in development, the bone structure breaks loose from the jaw and migrates to the inner ear area. The structure is known as the middle ear, and is made up of the incus, stapes, malleus, and tympanic membrane. These correspond to the quadrate, prearticular, articular, and angular structures in the reptile jaw. For this reason, researchers believe the similarity of the results shows that mammals and reptiles have a common ancestry." xsd:string {source="WP"} property_value: editor_note "This should probably be restricted to mammals - the AAO/XAO structures may group non-homologous structures [Wikipedia:Evolution_of_mammalian_auditory_ossicles] see https://github.com/seger/aao/issues/5." xsd:string property_value: external_definition "The small bones of the middle ear: incus, malleus, and stapes. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000461", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/auditory+ossicles"} property_value: homology_notes "Additional structural analysis within a phylogenetic context has led to the remarkable discovery that in synapsids, thought to be ancestral to mammals, both the quadrate and articular have become reduced and less firmly articulated with their surrounding bones, reducing their jaw-joint-bearing role. This trend culminated with the incorporation of the quadrate, the columella (which remains articulated with the quadrate), and the articular into the expanded middle ear in mammals.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000461", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.695", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall [Term] id: UBERON:0001687 @@ -183677,13 +183975,13 @@ relationship: develops_from UBERON:0010751 ! squamous part of temporal bone prim relationship: part_of UBERON:0001678 {notes="see comments"} ! temporal bone relationship: part_of UBERON:0003113 {notes="temporal series", source="ISBN:0073040584"} ! dermatocranium relationship: part_of UBERON:0004339 {source="EHDAA2", source="PMID:11523816"} ! vault of skull +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/eb/Skull_synapsida_1.png" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/fd/Gray144.png" xsd:anyURI property_value: editor_note "consider separate class for squamosal OR making squamosal the primary label" xsd:string property_value: external_definition "Paired, intramembranous bones that lie at the posterolateral margins of the skull. Lateral and dorsal to the quadrate.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000574", ontology="AAO", source="AAO:EJS"} property_value: external_definition "The squamosal bone is part of the dermatocranium in early tetrapods and becomes part of the mammalian occipital and temporal bones. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Grande_L, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF, p.246, see_Liem_KF][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001561", ontology="VHOG", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly property_value: taxon_notes "The squamosal bone, which is homologous with the squama, and forms the side of the cranium in many bony fish and tetrapods. Primitively, it is a flattened plate-like bone, but in many animals it is narrower in form, for example, where it forms the boundary between the two temporal fenestrae of diapsid reptiles" xsd:string [Term] @@ -183779,6 +184077,7 @@ id: UBERON:0001700 name: geniculate ganglion def: "The group of sensory neuron cell bodies associated with the facial nerve (seventh cranial nerve)." [ISBN:0-683-40008-8, MP:0001082] subset: efo_slim +subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -183821,6 +184120,7 @@ relationship: develops_from UBERON:0009124 {source="EHDAA2:0004623", source="ZFA relationship: develops_from UBERON:0010258 {source="EHDAA2:0004623"} ! mesenchyme from rhombencephalic neural crest relationship: develops_from UBERON:0012175 {source="EHDAA2:0000491"} ! acoustico-facial VII-VIII ganglion complex relationship: extends_fibers_into UBERON:0001647 ! facial nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray789.png" xsd:anyURI property_value: editor_note "resolve facial VII vs geniculate (see EHDAA2)" xsd:string property_value: homology_notes "These (the epibranchial placodes) are focal thickenings of the embryonic ectoderm that form immediately dorsal and caudal of the clefts between the pharyngeal arches in all vertebrates, and they produce the neuroblasts which migrate and condense to form the distal cranial ganglia: the geniculate, petrosal and nodose ganglia. (...) The one substantial difference between the vertebrate pharyngeal arches and those of the protochordates is the presence of the epibranchial placodes but the evolution of these structures was undoubtedly driven by the endoderm.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000707", ontology="VHOG", source="DOI:10.1046/j.1469-7580.2001.19910133.x Graham A. The development and evolution of the pharyngeal arches. J Anat (2001)", source="http://bgee.unil.ch/"} @@ -183954,8 +184254,8 @@ relationship: composed_primarily_of GO:0045095 ! keratin filament relationship: develops_from UBERON:0011272 {source="Wikipathways:WP2062"} ! embryonic skin basal layer relationship: part_of UBERON:0001003 {source="FMA"} ! skin epidermis property_value: curator_notes "Use this class for both the nails of primates and the homologous claws of mammals such as mouse." xsd:string -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: taxon_notes "A primate's nail consists of the unguis alone; the subunguis has disappeared" xsd:string [Term] @@ -184323,7 +184623,7 @@ xref: FMA:54510 xref: HBA:9030 xref: MA:0001073 xref: MBA:35 -xref: MESH:D065838 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D065838 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C12897 xref: neuronames:492 {source="BIRNLEX:1240"} xref: SCTID:362457000 @@ -185083,8 +185383,8 @@ relationship: develops_from UBERON:0008947 {source="EHDAA2"} ! respiratory primo relationship: innervated_by UBERON:0003716 ! recurrent laryngeal nerve relationship: part_of UBERON:0000065 ! respiratory tract property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8a/Larynx_external_en.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-larynx.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.0/assets/3d-vh-f-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.0/assets/3d-vh-m-larynx.glb" xsd:anyURI property_value: external_definition "An anatomical cluster consisting of the epiglottus, the arytenoid cartilages, the thyroid cartilage, the cricoid cartilage and the muscles, membranes, and ligaments connecting them, and also of the mucosal covering these structures.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} property_value: external_definition "Anatomical structure consisting of a narrowly triangular chamber supported by a series of semicircular cartilages in which part of the sound-production system is located.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000268", ontology="AAO", source="AAO:BJB"} property_value: has_relational_adjective "laryngeal" xsd:string @@ -185117,8 +185417,8 @@ is_a: UBERON:0001739 ! laryngeal cartilage relationship: develops_from UBERON:0010219 {source="EHDAA2"} ! thyroid pre-cartilage condensation relationship: part_of UBERON:0010212 {source="EHDAA2"} ! laryngeal apparatus property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8a/Larynx_external_en.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-larynx.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.0/assets/3d-vh-f-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.0/assets/3d-vh-m-larynx.glb" xsd:anyURI property_value: external_definition "The largest cartilage of the larynx, having two broad processes that join anteriorly to form the Adam's apple. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001365", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/thyroid+cartilage"} property_value: homology_notes "[In anura] a dorsal pair of arytenoid cartilages (...), which support vocal cords, and a ventral pair (often fused) of cricoid cartilage (...). These cartilages are regarded as derivatives of posterior visceral arches of ancestors. Together they constitute the larynx, a structure characteristic of tetrapods. (...) [In mammals] Paired arytenoid cartilages help support and control the vocal cords. The cricoid cartilage is single. Two additional cartilages are present that are lacking in other vertebrates: a large ventral thyroid cartilage (...) and a cartilage in the epiglottis.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001365", ontology="VHOG", source="ISBN:978-0471090588 Hildebrand M, Analysis of vertebrate structure (1983) p.239-241", source="http://bgee.unil.ch/"} @@ -185152,8 +185452,8 @@ relationship: fma_set_term FMA:64159 relationship: part_of UBERON:0001737 ! larynx relationship: part_of UBERON:0008895 {source="https://github.com/obophenotype/uberon/wiki/The-axial-skeleton"} ! splanchnocranium relationship: part_of UBERON:0010212 ! laryngeal apparatus -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-larynx.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.0/assets/3d-vh-f-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.0/assets/3d-vh-m-larynx.glb" xsd:anyURI property_value: homology_notes "(In anura) a dorsal pair of arytenoid cartilages (...), which support vocal cords, and a ventral pair (often fused) of cricoid cartilage (...). These cartilages are regarded as derivatives of posterior visceral arches of ancestors. Together they constitute the larynx, a structure characteristic of tetrapods. (...) (In mammals) Paired arytenoid cartilages help support and control the vocal cords. The cricoid cartilage is single. Two additional cartilages are present that are lacking in other vertebrates: a large ventral thyroid cartilage (...) and a cartilage in the epiglottis.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001550", ontology="VHOG", source="ISBN:978-0471090588 Hildebrand M, Analysis of vertebrate structure (1983) p.239-241", source="http://bgee.unil.ch/"} [Term] @@ -185183,8 +185483,13 @@ is_a: UBERON:0015212 ! lateral structure relationship: develops_from UBERON:0010220 {source="cjm"} ! arytenoid pre-cartilage condensation relationship: in_lateral_side_of UBERON:0001737 ! larynx property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray950.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-larynx.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.0/assets/3d-vh-f-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.0/assets/3d-vh-m-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI property_value: external_definition "Paired, anteroposteriorly elongated cartilages that are associated with the vocal cords. These cartilages are medially separated and hemispherical, and their concave side faces ventromedially.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000674", ontology="AAO", source="AAO:LAP"} [Term] @@ -185208,8 +185513,8 @@ relationship: has_developmental_contribution_from UBERON:0003117 ! pharyngeal ar relationship: part_of UBERON:0001737 {source="FMA"} ! larynx relationship: part_of UBERON:0008895 ! splanchnocranium property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/56/Gray952.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-larynx.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.0/assets/3d-vh-f-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.0/assets/3d-vh-m-larynx.glb" xsd:anyURI [Term] id: UBERON:0001742 @@ -185219,7 +185524,7 @@ subset: uberon_slim xref: EMAPA:37522 {source="MA:th"} xref: FMA:55112 xref: MA:0001763 -xref: MESH:D004825 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D004825 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C32526 xref: SCTID:278990001 xref: UMLS:C0458526 {source="ncithesaurus:Epiglottic_Cartilage"} @@ -185229,8 +185534,8 @@ intersection_of: UBERON:0001739 ! laryngeal cartilage intersection_of: part_of UBERON:0000388 ! epiglottis relationship: composed_primarily_of UBERON:0001996 ! elastic cartilage tissue relationship: part_of UBERON:0000388 ! epiglottis -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-larynx.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.0/assets/3d-vh-f-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.0/assets/3d-vh-m-larynx.glb" xsd:anyURI property_value: external_ontology_notes "laryngeal cartilage in MP" xsd:string {external_ontology="MP"} [Term] @@ -185682,7 +185987,6 @@ xref: EMAPA:37797 {source="MA:th"} xref: FMA:5731 xref: GAID:721 xref: galen:VagusNerve -xref: HBA:9337 xref: MA:0001106 xref: MBA:917 xref: MESH:D014630 @@ -186561,7 +186865,6 @@ xref: EHDAA2:0000323 xref: EMAPA:17264 xref: FMA:5865 xref: GAID:802 -xref: HBA:9299 xref: MA:0000215 xref: MBA:967 xref: MESH:D003391 @@ -187036,7 +187339,7 @@ xref: ENVO:02000032 xref: EV:0100344 xref: FMA:58822 xref: MA:0001286 -xref: MESH:D014822 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D014822 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C13323 xref: UMLS:C0229096 {source="ncithesaurus:Vitreous_Humor"} xref: VHOG:0000795 @@ -187295,7 +187598,7 @@ xref: EHDAA2:0001969 xref: EMAPA:17157 xref: FMA:5890 xref: MA:0000226 -xref: MESH:D005728 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D005728 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C12467 xref: SCTID:362485003 xref: UMLS:C0017071 {source="ncithesaurus:Sympathetic_Ganglion"} @@ -187357,7 +187660,7 @@ xref: EHDAA2:0001400 xref: EMAPA:32813 xref: FMA:5894 xref: MA:0002469 -xref: MESH:D005726 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D005726 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C52557 xref: NLXANAT:100303 xref: SCTID:279284004 @@ -187478,6 +187781,7 @@ relationship: part_of UBERON:0001711 {source="FMA", source="MA"} ! eyelid id: UBERON:0001813 name: spinal nerve plexus def: "An intermingling of fiber fascicles from adjacent spinal nerves to form a network." [http://www.medilexicon.com/medicaldictionary.php?t=70024] +subset: human_reference_atlas synonym: "plexus nervorum spinalium" EXACT OMO:0003011 [FMA:5903, FMA:TA] synonym: "plexus of spinal nerves" EXACT [FMA:5903] synonym: "somatic nerve plexus" EXACT [FMA:5903] @@ -187495,6 +187799,7 @@ intersection_of: UBERON:0001810 ! nerve plexus intersection_of: extends_fibers_into UBERON:0001780 ! spinal nerve relationship: extends_fibers_into UBERON:0001780 ! spinal nerve relationship: part_of RO:0002577 ! system +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: homology_notes "To reach the muscles, dermatomes, and other structures of the limbs, some of the neurons in the spinal nerves come together in the plexus at the base of the limb. Such plexuses occur in all gnathostomes, and they reach their highest complexity among mammals and birds in which the cervical plexus supplies many ventral neck muscles, the brachial plexus supplies the pectoral appendage, a lumbosacral plexus supplies the pelvic appendage, and a coccygeal plexus supplies some of the pelvic muscles.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000926", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.436", source="http://bgee.unil.ch/"} [Term] @@ -187777,7 +188082,7 @@ xref: CALOHA:TS-0655 xref: EMAPA:37681 {source="MA:th"} xref: FMA:59502 xref: MA:0001883 -xref: MESH:D055171 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D055171 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C49593 xref: SCTID:278941001 xref: UMLS:C0225415 {source="ncithesaurus:Nasal_Cartilage"} @@ -188756,7 +189061,7 @@ synonym: "membranous semicircular canal" RELATED [MA:0000251] xref: EMAPA:32830 xref: FMA:61122 xref: MA:0000251 -xref: MESH:D054776 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D054776 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C33528 xref: SCTID:279833009 xref: UMLS:C1323109 {source="ncithesaurus:Semicircular_Duct"} @@ -188883,7 +189188,7 @@ xref: EHDAA:4706 xref: EMAPA:17286 xref: FMA:61255 xref: MA:0000245 -xref: MESH:D014722 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D014722 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C33871 xref: UMLS:C0042606 {source="ncithesaurus:Vestibular_Labyrinth"} xref: Wikipedia:Inner_ear @@ -188901,7 +189206,7 @@ subset: uberon_slim xref: EMAPA:35753 xref: FMA:61269 xref: MA:0001206 -xref: MESH:D054738 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D054738 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:362578000 xref: Wikipedia:Scala_vestibuli is_a: UBERON:0011060 {source="MA"} ! perilymphatic channel @@ -189079,7 +189384,7 @@ xref: EMAPA:35357 xref: FMA:242199 xref: GAID:674 xref: MA:0000905 -xref: MESH:D005625 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D005625 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NLXANAT:20090601 xref: Wikipedia:Frontal_lobe is_a: UBERON:0016529 ! cortex of cerebral lobe @@ -190141,11 +190446,11 @@ relationship: develops_from UBERON:0010092 ! future metencephalon relationship: dubious_for_taxon NCBITaxon:7955 ! Danio rerio relationship: immediate_transformation_of UBERON:0010092 {evidence="definitional"} ! future metencephalon relationship: part_of UBERON:0002028 ! hindbrain +property_value: dc:contributor https://github.com/cmungall property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg" xsd:anyURI property_value: external_definition "Anterior part of the hindbrain ventral to the cerebellum[BIRNLEX:965]." xsd:string {source="BIRNLEX:965"} property_value: external_definition "The anterior of two brain vesicles formed by specialization of the rhombencephalon in the developing embryo. It gives rise to cerebellum and pons. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000741", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/metencephalon"} property_value: homology_notes "The early development of most vertebrate brains is similar (...). The zebrafish neural tube follows the same basic differentiation pattern as the mammalian neural tube (reference 1); The brain develops from three embryonic enlargements of the neural tube, which later differentiate into five regions. A forebrain differentiates into telencephalon and diencephalon. The midbrain, or mesencephalon, remains undivided. The hindbrain divides into the metencephalon and myelencephalon. Cavities within the brain enlarge to form a series of interconnected ventricles (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000741", ontology="VHOG", source="ISBN:978-0878932504 Gilbert SF, Developmental Biology (2006) p.381-382, ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.500", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall [Term] id: UBERON:0001896 @@ -190316,8 +190621,14 @@ relationship: present_in_taxon NCBITaxon:117569 {source="Ariens, p. 1192"} ! Hyp relationship: present_in_taxon NCBITaxon:7742 ! Vertebrata relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/9f/LocationOfHypothalamus.jpg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.0/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.0/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI property_value: external_definition "A specialized brain region of the ventral diencephalon arising near the end of the segmentation period; the embryonic hypothalamic region will give rise to the posterior pituitary gland as well as a number of brain nuclei. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000032", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Part of the diencephalon ventral to the thalamus consisting of connecting fibers and is a center for control of the autonomous nervous system.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010484", ontology="AAO", source="AAO:BJB"} property_value: has_relational_adjective "hypothalamic" xsd:string @@ -190644,8 +190955,12 @@ relationship: present_in_taxon NCBITaxon:117569 {source="Hardisty, p. 310"} ! Hy relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: axiom_lost_from_external_ontology "relationship loss: part_of pineal complex (TAO:0001359)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000019", ontology="TAO"} property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/6b/Illu_pituitary_pineal_glands.jpg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI property_value: external_definition "A circumscribed swelling, includes the pineal primordium that appears late in the segmentation period in the dorsal midline of the diencephalon. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000019", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Anatomical structure which is a medial outgrowth of the thalamus on the dorsal surface of the brain. This structure is light sensitive and secretes melatonin when exposed to prolonged darkness.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010549", ontology="AAO", source="AAO:BJB"} property_value: has_relational_adjective "epiphyseal" xsd:string @@ -190725,7 +191040,7 @@ xref: FMA:62038 xref: HBA:4507 xref: MA:0000878 xref: MBA:797 -xref: MESH:D065820 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D065820 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:438 xref: SCTID:369186007 xref: Wikipedia:Zona_incerta @@ -190781,8 +191096,12 @@ relationship: part_of UBERON:0002104 ! visual system relationship: part_of UBERON:0003931 ! diencephalic white matter relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray773.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI property_value: editor_note "relationships need checking by expert. NIF and ZFA both state part of diencepahalon; MA says part of optic nerve II. in uberon, CNS and PNS are spatially disjoint, and axon tracts are part of the CNS so we make the relationship to CNII 'continuous_with'" xsd:string [Term] @@ -191577,7 +191896,7 @@ synonym: "nucleus preopticus lateralis" RELATED OMO:0003011 [NeuroNames:381] xref: BAMS:LPO xref: BIRNLEX:1722 xref: BM:Die-Hy-LPO -xref: BTO:0006166 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006166 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:10471 xref: EMAPA:35483 xref: FMA:62326 @@ -192011,7 +192330,7 @@ xref: FMA:62393 xref: HBA:9002 xref: MA:0000212 xref: MAT:0000452 -xref: MESH:D013681 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D013681 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:491 {source="BIRNLEX:1200"} xref: SCTID:362392007 xref: TAO:0000160 @@ -192057,7 +192376,7 @@ xref: FMA:62402 xref: HBA:9079 xref: MA:0001062 xref: MBA:1100 -xref: MESH:D066250 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D066250 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:467 {source="BIRNLEX:703"} xref: NLX:59721 xref: SCTID:416333003 @@ -192084,11 +192403,11 @@ relationship: overlaps UBERON:0001891 ! midbrain relationship: overlaps UBERON:0001894 ! diencephalon relationship: part_of UBERON:0000955 ! brain relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +property_value: dc:contributor https://github.com/cmungall property_value: external_definition "A narrow, transversely oriented rostral zone of the mesencephalic tectum, bounded caudally by the superior colliculus, rostrally by the habenular trigone, and laterally by the pulvinar thalami; the pretectal area contains several nuclei that receive fibers from the optic tract; it has bilateral efferent connections with the Edinger-Westphal nucleus of the oculomotor nuclear complex by way of which it mediates the pupillary light refle[MP:0009637]x" xsd:string {source="MP:0009637"} property_value: external_definition "Region of brain lying between the midbrain tectum and the thalamus (Sefton and Dreher, in Paxinos, G The rat central nervous system, 1995, pg 859), Situated at the level of poterior commissure and just rostral to the superior colliculus (Brodal, Neurological Anatomy, 3rd ed, 1981, pg 542)" xsd:string {source="NLX:59721"} property_value: external_ontology_notes "part of diencephalon in ZFA - modify to adjacent here, supported by pub. Note there is some inconsistency in resources between the region vs nuclei - sometimes they are treated equivalent, sometimes separate (e.g. MP)" xsd:string {external_ontology="ZFA"} property_value: function_notes "It receives binocular sensory input from retinal ganglion cells of the eyes, and is the region responsible for maintaining the pupillary light reflex" xsd:string -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: taxon_notes "in monotremes, undifferentiated and possesses only a single nucleus[ISBN:0471888893]" xsd:string property_value: taxon_notes "teleost fishes exhibit hypertrophy of the pretectum[ISBN:0471888893]" xsd:string property_value: taxon_notes "within the amniotes, this region is smaller in mammals[ISBN:0471888893]" xsd:string @@ -192154,8 +192473,12 @@ relationship: part_of UBERON:0002259 ! corpora quadrigemina relationship: part_of UBERON:0002314 ! midbrain tectum relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI property_value: external_definition "The brain structure where the two separate inputs from the two eyes are combined into a single, integrated map.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010609", ontology="AAO", source="PMID:17952453"} property_value: external_definition "The roof of the midbrain, morphologically visible by the end of the segmentation period. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000445", ontology="TAO", source="ZFIN:curator"} property_value: taxon_notes "The tectum is a layered structure, with a number of layers that vary by species. The superficial layers are sensory-related, and receive input from the eyes as well as other sensory systems.[1] The optic tectum is one of the fundamental components of the vertebrate brain, existing across the full range of species from hagfish to human.[4] (See the brain article for background.) Some aspects of the structure are very consistent, including a structure composed of a number of layers, with a dense input from the optic nerve to the superficial layers and another strong input conveying somatosensory input to deeper layers. Other aspects are highly variable, such as the total number of layers (from 3 in the African lungfish to 15 in the goldfish[5]), and the number of different types of cells (from 2 in the lungfish to 27 in the house sparrow[5]" xsd:string @@ -192201,8 +192524,12 @@ relationship: part_of UBERON:0002259 ! corpora quadrigemina relationship: part_of UBERON:0002314 ! midbrain tectum relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/26/Gray711.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0001947 @@ -192222,7 +192549,7 @@ xref: BAMS:R xref: BAMS:RN xref: BIRNLEX:1478 xref: BM:MB-RN -xref: BTO:0006329 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006329 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:12247 xref: EHDAA2:0004706 xref: EMAPA:35724 @@ -192257,8 +192584,12 @@ relationship: only_in_taxon NCBITaxon:7776 {source="ISBN:0471888893"} ! Gnathost relationship: part_of UBERON:0001943 {source="FMA"} ! midbrain tegmentum relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI property_value: function_notes "in animals without a significant corticospinal tract, gait is mainly controlled by the red nucleus." xsd:string [Term] @@ -192714,6 +193045,7 @@ relationship: part_of UBERON:0002185 ! bronchus id: UBERON:0001964 name: least splanchnic nerve def: "A thoracic nerve that nerve travels into the abdomen, where its fibers synapse in the renal ganglia." [Wikipedia:Thoracic_splanchnic_nerves#cite_note-4] +subset: human_reference_atlas subset: organ_slim subset: uberon_slim synonym: "least thoracic splanchnic nerve" EXACT [FMA:6283] @@ -192730,6 +193062,7 @@ xref: SCTID:280506004 xref: Wikipedia:Thoracic_splanchnic_nerves#cite_note-4 is_a: UBERON:0018679 {source="FMA"} ! thoracic splanchnic nerve relationship: connected_to UBERON:0018676 ! renal nerve plexus +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/77/Gray838.png" xsd:anyURI property_value: external_ontology_notes "in MA this is part of the kidney but this leads to unsatisfiability" xsd:string {external_ontology="MA"} @@ -192762,7 +193095,7 @@ xref: FMA:62907 xref: HBA:9074 xref: MA:0001064 xref: MBA:374 -xref: MESH:D065842 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D065842 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C97341 xref: neuronames:537 {source="BIRNLEX:990"} xref: UMLS:C0175412 {source="BIRNLEX:990", source="ncithesaurus:Pars_Compacta"} @@ -192807,7 +193140,7 @@ xref: FMA:62908 xref: HBA:9075 xref: MA:0001066 xref: MBA:381 -xref: MESH:D065841 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D065841 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:537 {source="BIRNLEX:968"} xref: UMLS:C0175413 {source="BIRNLEX:968"} xref: Wikipedia:Pars_reticulata @@ -193107,7 +193440,7 @@ xref: EHDAA2:0004728 xref: EMAPA:35770 xref: FMA:63083 xref: MA:0002502 -xref: MESH:D044967 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D044967 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C13325 xref: UMLS:C0229671 {source="ncithesaurus:Serum"} xref: Wikipedia:Serum_(blood) @@ -193455,7 +193788,7 @@ relationship: part_of UBERON:0016887 ! entire extraembryonic component relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/66/Placenta.jpg" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f1/Placenta.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Placenta.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/placenta-full-term-female/v1.0/assets/VH_F_Placenta.glb" xsd:anyURI property_value: has_relational_adjective "placental" xsd:string property_value: homology_notes "Phylogenetic analyses of the concatenated data set using maximum parsimony, maximum likelihood and distance based (neighbour joining) methods all converged on a nearly identical, well supported topology defining four principal eutherian lineages. The results affirm monophyly of traditional placental orders (except Artiodactyla and Insectivora), and also support some previously proposed, as well as new, superordinal clades.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001266", ontology="VHOG", source="DOI:10.1038/35054550 Murphy WJ, Eizirik E, Johnson WE, Zhang YP, Ryder OA, O'Brien SJ, Molecular phylogenetics and the origins of placental mammals. Nature (2001)", source="http://bgee.unil.ch/"} property_value: taxon_notes "Eutherians: In eutherians, the chorioallantoic membrane of the fetus establishes intimate contact with the adjacent vascular wall of the mother's uterus to produce the placenta, a composite structure formed in part from tissues of the fetus and in part from tissues of the mother [ISBN:0073040584 (Vertebrates, Kardong)]. TODO - is taxon restriction too strict, even if we restrict def to allantoic placenta? - WP says: also found in some snakes and lizards with varying levels of development up to mammalian levels. Pough et al. 1992. Herpetology: Third Edition. Pearson Prentice Hall:Pearson Education, Inc., 2002. // See also: DOI:10.1002/jmor.11011" xsd:string @@ -193689,7 +194022,7 @@ synonym: "stratified cartilage tissue" EXACT [http://orcid.org/0000-0002-6601-21 xref: FMA:64784 xref: galen:Fibrocartilage xref: MA:0000108 -xref: MESH:D051445 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D051445 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32599 xref: SCTID:91685003 xref: UMLS:C0684077 {source="ncithesaurus:Fibrocartilage"} @@ -194020,8 +194353,14 @@ relationship: has_part UBERON:0009744 ! lymph node medullary sinus relationship: has_part UBERON:0009745 ! lymph node medullary cord relationship: part_of UBERON:0000029 ! lymph node relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-left/v1.0/assets/NIH_F_Lymph_Node_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-right/v1.0/assets/NIH_F_Lymph_Node_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.2/assets/NIH_F_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.2/assets/NIH_M_Lymph_Node.glb" xsd:anyURI [Term] id: UBERON:0002008 @@ -194164,8 +194503,12 @@ relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0008886 ! pulmonary vascular system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: supplies UBERON:0002048 ! lung -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png" xsd:anyURI property_value: external_definition "Major artery which supplies blood to the lungs.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010221", ontology="AAO", source="AAO:BJB"} property_value: external_definition "One of two arteries, leaving from the heart, the left one supplying the left lung and the right one supplying the right lung. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000982", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/pulmonary+artery"} @@ -194176,6 +194519,7 @@ property_value: taxon_notes "In the human heart, the pulmonary trunk (pulmonary id: UBERON:0002013 name: superior hypogastric nerve plexus def: "The superior hypogastric plexus (in older texts, hypogastric plexus or presacral nerve) is a plexus of nerves situated on the vertebral bodies below the bifurcation of the aorta. [WP,unvetted]." [Wikipedia:Superior_hypogastric_plexus] +subset: human_reference_atlas subset: uberon_slim synonym: "hypogastric plexus" RELATED [] synonym: "nervus presacralis" EXACT OMO:0003011 [FMA:6642, FMA:TA] @@ -194191,6 +194535,7 @@ xref: Wikipedia:Superior_hypogastric_plexus is_a: UBERON:0001816 ! autonomic nerve plexus relationship: adjacent_to UBERON:0001075 ! bony vertebral centrum relationship: overlaps UBERON:0005303 ! hypogastric nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/77/Gray838.png" xsd:anyURI property_value: editor_note "check relationship with generic hypogastric nerve/plexus" xsd:string @@ -194198,6 +194543,7 @@ property_value: editor_note "check relationship with generic hypogastric nerve/p id: UBERON:0002014 name: inferior hypogastric nerve plexus def: "The inferior hypogastric plexus (pelvic plexus in some texts) is a plexus of nerves that supplies the viscera of the pelvic cavity. The inferior hypogastric plexus is a paired structure, with each situated on the side of the rectum in the male, and at the sides of the rectum and vagina in the female. [WP,unvetted]." [Wikipedia:Inferior_hypogastric_plexus] +subset: human_reference_atlas subset: uberon_slim synonym: "inferior hypogastric plexus" EXACT [] synonym: "pelvic nerve plexus" EXACT [] @@ -194216,6 +194562,7 @@ xref: UMLS:C0205797 {source="ncithesaurus:Inferior_Hypogastric_Nerve_Plexus"} xref: Wikipedia:Inferior_hypogastric_plexus is_a: UBERON:0001816 ! autonomic nerve plexus relationship: overlaps UBERON:0005303 ! hypogastric nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/77/Gray838.png" xsd:anyURI property_value: editor_note "check relationship with generic hypogastric nerve/plexus" xsd:string @@ -194246,10 +194593,18 @@ relationship: bounding_layer_of UBERON:0002113 ! kidney relationship: contributes_to_morphology_of UBERON:0002113 ! kidney relationship: part_of UBERON:0002113 ! kidney relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.2/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.2/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/6/69/Illu_kidney.jpg" xsd:anyURI property_value: function_notes "provides some protection from trauma and damage." xsd:string property_value: structure_notes "The renal capsule relates to the other layers in the following order (moving from innermost to outermost): renal medulla renal cortex renal capsule perinephric fat (or 'perirenal fat') renal fascia paranephric fat (or 'pararenal fat') peritoneum (anteriorly), and transversalis fascia (posteriorly).[Wikipedia:Kidney_capsule]" xsd:string @@ -194291,8 +194646,12 @@ relationship: fma_set_term FMA:70827 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0008886 ! pulmonary vascular system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png" xsd:anyURI property_value: external_definition "Any of the veins which collect blood from the lungs and some small vesicles received from the esophagus.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010521", ontology="AAO", source="AAO:BJB"} property_value: external_definition "One of two pairs of large vessels that return oxygenated blood from each lung to the left atrium of the heart. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001133", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/pulmonary+vein"} @@ -194403,7 +194762,6 @@ xref: EMAPA:17265 xref: FMA:6720 xref: FMA:80284 xref: GAID:825 -xref: HBA:9340 xref: MA:0001088 xref: MBA:717 xref: MESH:D000055 @@ -194455,7 +194813,7 @@ xref: EMAPA:37596 {source="MA:th"} xref: FMA:67242 xref: HBA:4006 xref: MA:0001112 -xref: MESH:D066128 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D066128 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32695 xref: neuronames:2869 xref: TAO:0002197 @@ -194598,6 +194956,7 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/91/Te id: UBERON:0002024 name: internal carotid nerve plexus def: "The internal carotid plexus (carotid plexus) is situated on the lateral side of the internal carotid artery, and in the plexus there occasionally exists a small gangliform swelling, the carotid ganglion, on the under surface of the artery. Postganglionic sympathetic fibres ascend from the superior cervical ganglion, along the walls of the internal carotid artery, to enter the internal carotid plexus. These fibres then distribute to deep structures, which include the levator palpebrae superioris and pupillary dilator muscles. Some of the fibres from the internal carotid plexus converge to form the deep petrosal nerve. The internal carotid plexus communicates with the semilunar ganglion, the abducent nerve, and the sphenopalatine ganglion; it distributes filaments to the wall of the carotid artery, and also communicates with the tympanic branch of the glossopharyngeal nerve. [WP,unvetted]." [Wikipedia:Internal_carotid_nerve_plexus] +subset: human_reference_atlas subset: uberon_slim synonym: "internal carotid plexus" EXACT [] synonym: "plexus caroticus internus" EXACT OMO:0003011 [FMA:67533, FMA:TA] @@ -194609,6 +194968,7 @@ xref: SCTID:280509006 xref: UMLS:C0459526 {source="ncithesaurus:Internal_Carotid_Nerve_Plexus"} xref: Wikipedia:Internal_carotid_nerve_plexus is_a: UBERON:0001816 ! autonomic nerve plexus +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a5/Gray840.png" xsd:anyURI [Term] @@ -195005,7 +195365,7 @@ synonym: "nucleus praeopticus medialis" RELATED OMO:0003011 [NeuroNames:380] synonym: "nucleus preopticus medialis" RELATED OMO:0003011 [NeuroNames:380] xref: BAMS:MPO xref: BIRNLEX:706 -xref: BTO:0006167 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006167 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:10470 xref: DMBA:15604 xref: EMAPA:35549 @@ -195162,8 +195522,12 @@ relationship: part_of UBERON:0001891 {source="multiple"} ! midbrain relationship: part_of UBERON:0002420 {source="NIF"} ! basal ganglion relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/5f/Midbraincrosssection.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI property_value: editor_note "TODO - In BTO and NIF, part of basal ganglion which is part of telencephalon - but this is inconsistent with being part of midbrain, if these are spatially disjoint, as in ABA" xsd:string property_value: external_definition "Subdivision of the midbrain anterior to the midbrain tegmentum which contains darkly pigmented neurons[FMA][FMA:67947]." xsd:string {source="FMA:67947"} property_value: homology_notes "(...) the substantia nigra first appears in reptiles and is best developed in primates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001573", ontology="VHOG", source="ISBN:978-0471090588 Hildebrand M, Analysis of vertebrate structure (1983) p.336", source="http://bgee.unil.ch/"} @@ -195287,7 +195651,7 @@ xref: FMA:68462 xref: HBA:9457 xref: MA:0002980 xref: MBA:872 -xref: MESH:D065847 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D065847 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:512 {source="BIRNLEX:982"} xref: TAO:0000366 xref: UMLS:C0175392 {source="BIRNLEX:982"} @@ -195504,8 +195868,14 @@ relationship: only_in_taxon NCBITaxon:7776 ! Gnathostomata relationship: part_of UBERON:0000170 {note="some species only have a single lung"} ! pair of lungs relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: surrounded_by UBERON:0009778 {gci_relation="part_of", gci_filler="NCBITaxon:9606", source="FMA"} ! pleural sac -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.0/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb" xsd:anyURI property_value: external_definition "Either of two organs which allow gas exchange absorbing oxygen from inhaled air and releasing carbon dioxide with exhaled air.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010567", ontology="AAO", source="AAO:SBH"} property_value: has_relational_adjective "pulmonary" xsd:string property_value: homology_notes "Lungs had already developed as paired ventral pockets from the intestine in the ancestor of Osteognathostomata. (...) In actinopterygian fishes, apart from Cladistia, the ventral intestinal pocket migrates dorsally and becomes the swim-bladder, a mainly hydrostatical organ (reference 1); Comparative transcriptome analyses indicate molecular homology of zebrafish swimbladder and Mammalian lung (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000310", ontology="VHOG", source="ISBN:978-0198566694 Schmidt-Rhaesa A, The evolution of organ systems (2007) p.210, DOI:10.1371/journal.pone.0024019 Zheng W, Wang Z, Collins JE, Andrews RM, Stemple D, Gong Z, Comparative transcriptome analyses indicate molecular homology of zebrafish swimbladder and Mammalian lung. PLoS One (2011)", source="http://bgee.unil.ch/"} @@ -195531,6 +195901,13 @@ relationship: has_part UBERON:0000179 ! haemolymphatic fluid relationship: part_of UBERON:0007798 ! vascular system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/29/Circulatory_System_en.svg" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb" xsd:anyURI property_value: editor_note "see also: vascular system. Consider merging?" xsd:string property_value: has_relational_adjective "vascular" xsd:string @@ -195551,7 +195928,7 @@ xref: BILA:0000034 xref: BTO:0000174 xref: CALOHA:TS-2110 xref: EFO:0000461 -xref: FBbt:00004208 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004208 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:69067 xref: GAID:407 xref: MESH:D004628 @@ -195874,7 +196251,7 @@ xref: EHDAA:2586 xref: EMAPA:16696 xref: FMA:70302 xref: MA:0000078 -xref: MESH:D054089 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D054089 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: TAO:0001317 xref: VHOG:0000932 xref: Wikipedia:Atrioventricular_cushions @@ -196036,7 +196413,7 @@ relationship: located_in UBERON:0003422 ! mesenchyme of umbilical cord relationship: overlaps UBERON:0002331 {source="cjm"} ! umbilical cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray502.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Placenta.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/placenta-full-term-female/v1.0/assets/VH_F_Placenta.glb" xsd:anyURI [Term] id: UBERON:0002067 @@ -196216,7 +196593,7 @@ xref: BTO:0001314 xref: CALOHA:TS-2366 xref: EMAPA:37505 {source="MA:th"} xref: FMA:70544 -xref: MESH:D040521 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D040521 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C33645 xref: TAO:0001136 xref: UMLS:C0278403 {source="ncithesaurus:Subcutis"} @@ -196401,8 +196778,12 @@ relationship: in_right_side_of UBERON:0000948 ! heart relationship: part_of RO:0002577 ! system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb" xsd:anyURI property_value: external_definition "Right cardiac chamber which is continuous with the superior vena cava and inferior vena cava.[FMA]" xsd:string {source="FMA:7096"} property_value: homology_notes "The tetrapod clade develops a complete atrial septum and loses the fifth aortic arch altogether.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000328", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.620", source="http://bgee.unil.ch/"} property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI @@ -196442,8 +196823,12 @@ relationship: in_left_side_of UBERON:0000948 ! heart relationship: part_of RO:0002577 ! system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb" xsd:anyURI property_value: external_definition "Left cardiac chamber which is continuous with the pulmonary venous trunk.[FMA]" xsd:string {source="FMA:7097"} property_value: external_definition "The chamber of the heart that receives blood from the lungs[XAO:EJS]." xsd:string {source="XAO:EJS"} property_value: homology_notes "The tetrapod clade develops a complete atrial septum and loses the fifth aortic arch altogether.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000369", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.620", source="http://bgee.unil.ch/"} @@ -196484,8 +196869,12 @@ relationship: in_right_side_of UBERON:0000948 ! heart relationship: part_of RO:0002577 ! system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb" xsd:anyURI property_value: external_definition "The muscular chamber on the right and in front of the left ventricle. It generally receives venous blood from the right atrium and conveys it into the pulmonary artery. [(1988)_Dorian_AF, Amsterdam, Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B._Anatomy, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier's_Encyclopaedic_Dictionary_of_Medicine][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000717", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI property_value: taxon_notes "In mammals continuous with the pulmonary arteries" xsd:string @@ -196636,8 +197025,12 @@ relationship: in_left_side_of UBERON:0000948 ! heart relationship: part_of RO:0002577 ! system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb" xsd:anyURI property_value: external_definition "Thick-walled muscular chamber constituting the left border and apex of the heart. It receives oxygenated blood from the left atrium through the mitral orifice and send it off into the aorta. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000718", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: homology_notes "The vertebrate heart initially forms as a tube from a population of precursor cells termed the first heart field (FHF). Cells from the adjacent second heart field (SHF) are then progressively added to the developing heart. In avian and mammalian hearts, the FHF contributes mainly to the left ventricle, whereas the SHF gives rise to the outflow tract and large portions of the right ventricle and atria. Both fields arise from common mesodermal progenitors, although the detailed lineage relationships between FHF and SHF remain uncertain.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000718", ontology="VHOG", source="DOI:10.1126/science.1190181 Stolfi A, Gainous TB, Young JJ, Mori A, Levine M, Christiaen L, Early chordate origins of the vertebrate second heart field. Science (2010)", source="http://bgee.unil.ch/"} property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI @@ -196719,15 +197112,15 @@ relationship: connects UBERON:0002082 ! cardiac ventricle relationship: develops_from UBERON:0007279 ! presumptive atrioventricular canal relationship: immediate_transformation_of UBERON:0007279 {source="Bgee:AN"} ! presumptive atrioventricular canal relationship: part_of UBERON:0011820 {source="EHDAA2"} ! atrioventricular region +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly +property_value: dc:contributor https://github.com/rfoulger property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d8/Gray464.png" xsd:anyURI property_value: development_notes "The right side of the AVC becomes the tricuspid valve whereas the left side of the AVC will become the bicuspid valve" xsd:string property_value: external_definition "The canal connecting the primitive atrium and ventricle in fishes and amniotes embryo. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001473", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/atrioventricular+canal"} property_value: external_ontology_notes "this is a lumen in EHDAA2" xsd:string {external_ontology="EHDAA2"} property_value: function_notes "In the embryo, the atrioventricular canal delays the impulse from atrium to ventricle[PMID:22984480]" xsd:string property_value: homology_notes "The heart is the first organ to form and function in a vertebrate. (...) Septation of the AV canal is initiated with the formation of inferior and superior endocardial cushions in response to signaling from the overlying myocardium. (...) Analysis of zebrafish mutants with cardiovascular defects uncovered a previously unexpected level of conservation between zebrafish and human cardiovascular physiology.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001473", ontology="VHOG", source="DOI:10.1016/j.ddmec.2004.08.004 Haramis APG, Clevers HC, Holehearted: genetic approaches to congenital cardiac valve malformations. Drug Discovery Today: Disease Mechanisms (2004)", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/rfoulger [Term] id: UBERON:0002088 @@ -196783,7 +197176,7 @@ xref: EMAPA:37721 {source="MA:th"} xref: FMA:71221 xref: MA:0002986 xref: MAT:0000148 -xref: MESH:D013131 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D013131 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: MIAA:0000148 xref: TAO:0000317 xref: VHOG:0000317 @@ -196926,8 +197319,12 @@ relationship: adjacent_to UBERON:0002080 ! heart right ventricle relationship: adjacent_to UBERON:0002084 ! heart left ventricle relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/96/Gray498.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb" xsd:anyURI property_value: development_notes "involves the recruitment of myocardial cells as well as of non- muscular mesenchymal cells (Kaufman and Bard, 1999)" xsd:string {source="ISBN:0124020607"} property_value: external_definition "The partition separating the right and left ventricles of the heart. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000386", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/interventricular+septum"} property_value: homology_notes "The two most progressive vertebrate classes, the birds and mammals, have completed the ventricular septum and at long last have completely separated the two blood streams along the length of the major heart chambers. This development has obviously been brought about independently in the two cases, since mammals and birds have evolved independently from primitive reptiles.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000386", ontology="VHOG", source="ISBN:978-0721676678 Romer AS, Vertebrate body (1970) p.430", source="http://bgee.unil.ch/"} @@ -196954,10 +197351,10 @@ xref: UMLS:C0025474 {source="ncithesaurus:Mesentery"} xref: Wikipedia:Mesentery#Mesentery_.28general.29 is_a: UBERON:0000042 ! serous membrane relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa +property_value: dc:contributor https://github.com/cmungall property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/19/Gray1038.png" xsd:anyURI property_value: external_ontology_notes "in Uberon, this term is used in the generic sense, not necessarily restricted to the peritoneum, consistent with FMA. WP: 'In anatomy, the mesentery is the double layer of peritoneum that suspends the jejunum and ileum from the posterior wall of the abdomen. Its meaning, however, is frequently extended to include double layers of peritoneum connecting various components of the abdominal cavity.'. TODO - check. Consider FMA:259286 - Region of mesentery." xsd:string {external_ontology="FMA"} property_value: has_relational_adjective "mesenteric" xsd:string -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall [Term] id: UBERON:0002097 @@ -196997,10 +197394,13 @@ relationship: part_of UBERON:0002199 ! integument relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: curator_notes "consider 'integumentary system' for invertebrates" xsd:string property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/6d/Skin.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Skin.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_M_Skin.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Skin.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-skin.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/skin-female/v1.0/assets/VH_F_Skin.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/skin-female/v1.1/assets/VH_F_Skin.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/skin-female/v1.2/assets/VH_F_Skin.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/skin-female/v1.3/assets/3d-vh-f-skin.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/skin-male/v1.0/assets/VH_M_Skin.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/skin-male/v1.1/assets/VH_M_Skin.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/skin-male/v1.2/assets/VH_M_Skin.glb" xsd:anyURI property_value: external_ontology_notes "MA uses the term skin to refer to what is called here: zone of skin" xsd:string {external_ontology="FMA"} [Term] @@ -197121,7 +197521,7 @@ xref: GAID:36 xref: galen:Extremity xref: MA:0000007 xref: MAT:0000090 -xref: MESH:D005121 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D005121 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: MIAA:0000090 xref: NCIT:C12429 xref: SCTID:243996003 @@ -197350,9 +197750,12 @@ relationship: part_of UBERON:0000916 ! abdomen relationship: part_of UBERON:0002390 {source="FMA", source="MA"} ! hematopoietic system relationship: part_of UBERON:0002405 ! immune system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Spleen.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spleen.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spleen.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-female/v1.0/assets/VH_F_Spleen.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-female/v1.1/assets/VH_F_Spleen.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-female/v1.2/assets/VH_F_Spleen.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-male/v1.0/assets/VH_M_Spleen.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-male/v1.1/assets/VH_M_Spleen.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-male/v1.2/assets/VH_M_Spleen.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/d/d6/Illu_spleen.jpg" xsd:anyURI property_value: external_definition "An organ involved in red blood cell filtration and immune response.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010395", ontology="AAO", source="AAO:BMZ"} property_value: function_notes "It synthesizes antibodies in its white pulp and removes, from blood and lymph node circulation, antibody-coated bacteria along with antibody-coated blood cells" xsd:string @@ -197421,8 +197824,10 @@ relationship: site_of GO:0002384 ! hepatic immune response relationship: site_of GO:0005978 ! glycogen biosynthetic process relationship: site_of GO:0005980 ! glycogen catabolic process property_value: axiom_lost_from_external_ontology "relationship type change: differentiates_from endoderm (AAO:0000139) CHANGED TO: develops_from endoderm (UBERON:0000925)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010111", ontology="AAO"} -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/6/64/Leber_Schaf.jpg" xsd:anyURI property_value: external_definition "Organ which secretes bile and participates in formation of certain blood proteins.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010111", ontology="AAO", source="AAO:BJB"} property_value: external_ontology_notes "Only ZFA considers this part_of immune system - we weaken this to an overlaps relation, as in general it's only a subset of cells that have clear immune function." xsd:string {external_ontology="ZFA"} @@ -197476,8 +197881,9 @@ relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata relationship: part_of UBERON:0000160 ! intestine relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/82/Stomach_colon_rectum_diagram.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Small_Intestine.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-female/v1.1/assets/VH_F_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.0/assets/VH_M_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.1/assets/VH_M_Small_Intestine.glb" xsd:anyURI property_value: external_definition "The terminal region of the mid intestine is comprised of specialized enterocytes that appear to play a role in mucosal immunity. Wallace et al, 2005.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001323", ontology="TAO", source="ZFIN:curator"} property_value: homology_notes "Intestinal surface area also is increased in amphibians and reptiles by internal folds and occasionally by a few villi. The intestine can be divided into a small intestine and a slightly wider large intestine.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000055", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.566", source="http://bgee.unil.ch/"} @@ -197700,8 +198106,9 @@ relationship: part_of UBERON:0002108 ! small intestine relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: proximalmost_part_of UBERON:0002108 ! small intestine property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b3/Tractus_intestinalis_duodenum.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Small_Intestine.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-female/v1.1/assets/VH_F_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.0/assets/VH_M_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.1/assets/VH_M_Small_Intestine.glb" xsd:anyURI property_value: external_definition "The fixed portion of the small intestine deeply lodged in the posterior wall of the abdomen and extending from the pylorus to the beginning of the jejunum. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000052", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: has_relational_adjective "duodenal" xsd:string property_value: taxon_notes "In fish, the divisions of the small intestine are not as clear, and the terms anterior intestine or proximal intestine may be used instead of duodenum." xsd:string {scope="NCBITaxon:32443", source="Wikipedia:Duodenum"} @@ -197741,8 +198148,9 @@ relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut relationship: part_of UBERON:0002108 ! small intestine relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3d/Illu_small_intestine.jpg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Small_Intestine.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-female/v1.1/assets/VH_F_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.0/assets/VH_M_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.1/assets/VH_M_Small_Intestine.glb" xsd:anyURI property_value: editor_note "TODO consider ZFA:0001323 mid intestine, see also small intestine" xsd:string property_value: external_definition "The first two fifth of the small intestine beyond the duodenum. It extends from the end of the duodenum to the ileum. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000053", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: has_relational_adjective "jejunal" xsd:string @@ -197784,8 +198192,9 @@ relationship: contributes_to_morphology_of UBERON:0002108 ! small intestine relationship: part_of UBERON:0002108 ! small intestine relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3d/Illu_small_intestine.jpg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Small_Intestine.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-female/v1.1/assets/VH_F_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.0/assets/VH_M_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.1/assets/VH_M_Small_Intestine.glb" xsd:anyURI property_value: editor_note "TODO consider ZFA:0000706 posterior intestine, see also colon" xsd:string property_value: has_relational_adjective "ileal" xsd:string property_value: homology_notes "Although all vertebrates have a digestive tract and accessory glands, various parts of this system are not necessarily homologous, analogous, or even present in all species. Therefore, broad comparisons can be best made under the listings of headgut, foregut, midgut, pancreas and biliary system, hindgut.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000647", ontology="VHOG", source="ISBN:978-0521617147 Stevens CE and Hume ID, Comparative physiology of the vertebrate digestive system (2004) p.11", source="http://bgee.unil.ch/"} @@ -197847,7 +198256,7 @@ xref: EHDAA:1017 xref: EMAPA:16579 xref: FMA:72170 xref: MAT:0000117 -xref: MESH:D060910 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D060910 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MIAA:0000117 xref: NCIT:C34280 xref: SCTID:308804007 @@ -198073,7 +198482,7 @@ xref: FMA:72247 xref: HBA:9177 xref: MA:0001026 xref: MBA:398 -xref: MESH:D065832 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D065832 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:569 {source="BIRNLEX:1307"} xref: UMLS:C0175427 {source="BIRNLEX:1307"} xref: VHOG:0001381 @@ -198311,8 +198720,12 @@ relationship: connects UBERON:0002080 ! heart right ventricle relationship: part_of UBERON:0005965 ! outflow part of right atrium relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb" xsd:anyURI property_value: external_definition "The three-segmented valve of the heart that keeps blood in the right ventricle from flowing back into the right atrium. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000816", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/Tricuspid+valves"} property_value: external_ontology_notes "FMA part_ofs changed to connects" xsd:string {external_ontology="FMA"} property_value: homology_notes "The mature AV (atrioventricular) valve of the adult zebrafish 2-chambered heart is structurally similar to the mammalian AV valves with stratified ECM (extracellular matrix) and supporting chordae tendineae. Therefore, the major cellular and molecular events of valve development are largely conserved among animals with hearts composed of multiple chambers.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000816", ontology="VHOG", source="DOI:10.1161/CIRCRESAHA.109.201566 Combs MD, Yutzey KE, Heart valve development. Circulatory Research (2009)", source="http://bgee.unil.ch/"} @@ -198352,8 +198765,12 @@ relationship: connects UBERON:0002084 {source="FMA"} ! heart left ventricle relationship: part_of UBERON:0005966 ! outflow part of left atrium relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb" xsd:anyURI property_value: external_definition "A valve of the heart, composed of two triangular flaps, that is located between the left atrium and left ventricle and regulates blood flow between these chambers. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000817", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/mitral+valve"} property_value: external_ontology_notes "FMA part_ofs changed to connects" xsd:string {external_ontology="FMA"} property_value: homology_notes "The mature AV (atrioventricular) valve of the adult zebrafish 2-chambered heart is structurally similar to the mammalian AV valves with stratified ECM (extracellular matrix) and supporting chordae tendineae. Therefore, the major cellular and molecular events of valve development are largely conserved among animals with hearts composed of multiple chambers.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000817", ontology="VHOG", source="DOI:10.1161/CIRCRESAHA.109.201566 Combs MD, Yutzey KE, Heart valve development. Circulatory Research (2009)", source="http://bgee.unil.ch/"} @@ -198411,8 +198828,12 @@ is_a: UBERON:0005623 {source="MA"} ! semi-lunar valve relationship: part_of UBERON:0005956 ! outflow part of left ventricle relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb" xsd:anyURI property_value: external_definition "The valve between the left ventricle of the heart and the ascending aorta, consisting of three semilunar cusps. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000815", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/aortic+valve"} [Term] @@ -198552,7 +198973,7 @@ xref: FMA:72424 xref: HBA:9449 xref: MA:0001071 xref: MBA:975 -xref: MESH:D065839 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D065839 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:498 {source="BIRNLEX:822"} xref: SCTID:62088007 xref: TAO:0000244 @@ -198598,7 +199019,7 @@ xref: FMA:72429 xref: HBA:9021 xref: MA:0001020 xref: MBA:1052 -xref: MESH:D045042 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D045042 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:504 {source="BIRNLEX:1437"} xref: UMLS:C0262306 {source="BIRNLEX:1437"} xref: Wikipedia:Pedunculopontine_tegmental_nucleus @@ -198711,7 +199132,7 @@ xref: FMA:72439 xref: HBA:9012 xref: MA:0001069 xref: MBA:100 -xref: MESH:D066268 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D066268 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:522 {source="BIRNLEX:1000"} xref: SCTID:369240002 xref: TAO:0000903 @@ -198753,8 +199174,12 @@ relationship: connects UBERON:0002012 ! pulmonary artery relationship: connects UBERON:0002082 ! cardiac ventricle relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb" xsd:anyURI property_value: external_definition "The valve with semilunar cusps at the entrance to the pulmonary trunk from the right ventricle of the heart. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000814", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/pulmonary+valve"} [Term] @@ -198975,8 +199400,12 @@ relationship: mutually_spatially_disjoint_with UBERON:0007632 {source="ABA"} ! B relationship: part_of UBERON:0002567 ! basal part of pons relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/dc/Lower_pons_horizontal_KB.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0002152 @@ -199003,7 +199432,7 @@ xref: FMA:72515 xref: HBA:9294 xref: MA:0002745 xref: MBA:78 -xref: MESH:D065837 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D065837 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:620 {source="BIRNLEX:1529"} xref: NIFSTD_RETIRED:birnlex_1699 xref: SCTID:279219000 @@ -199152,7 +199581,7 @@ xref: FMA:72584 xref: HBA:9643 xref: MA:0001024 xref: MBA:206 -xref: MESH:D065846 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D065846 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:739 {source="BIRNLEX:1363"} xref: UMLS:C0175515 {source="BIRNLEX:1363"} xref: Wikipedia:Nucleus_raphe_magnus @@ -199182,7 +199611,7 @@ xref: FMA:72586 xref: HBA:9649 xref: MA:0001051 xref: MBA:230 -xref: MESH:D065848 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D065848 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:741 {source="BIRNLEX:1375"} xref: UMLS:C0175517 {source="BIRNLEX:1375"} xref: Wikipedia:Nucleus_raphe_pallidus @@ -199500,8 +199929,13 @@ intersection_of: UBERON:0002048 ! lung intersection_of: in_right_side_of UBERON:0000170 ! pair of lungs relationship: in_right_side_of UBERON:0000170 ! pair of lungs property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/32/Gray972.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb" xsd:anyURI property_value: homology_notes "Lungs had already developed as paired ventral pockets from the intestine in the ancestor of Osteognathostomata.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000301", ontology="VHOG", source="ISBN:978-0198566694 Schmidt-Rhaesa A, The evolution of organ systems (2007) p.210", source="http://bgee.unil.ch/"} property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI @@ -199526,8 +199960,13 @@ intersection_of: UBERON:0002048 ! lung intersection_of: in_left_side_of UBERON:0000170 ! pair of lungs relationship: in_left_side_of UBERON:0000170 ! pair of lungs property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/dd/Gray973.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb" xsd:anyURI property_value: homology_notes "Lungs had already developed as paired ventral pockets from the intestine in the ancestor of Osteognathostomata.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000618", ontology="VHOG", source="ISBN:978-0198566694 Schmidt-Rhaesa A, The evolution of organ systems (2007) p.210", source="http://bgee.unil.ch/"} property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI @@ -199589,8 +200028,13 @@ intersection_of: UBERON:0008948 ! upper lobe of lung intersection_of: part_of UBERON:0002167 ! right lung relationship: contributes_to_morphology_of UBERON:0002167 ! right lung relationship: part_of UBERON:0002167 ! right lung -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb" xsd:anyURI [Term] id: UBERON:0002171 @@ -199622,8 +200066,13 @@ intersection_of: UBERON:0008949 ! lower lobe of lung intersection_of: part_of UBERON:0002167 ! right lung relationship: contributes_to_morphology_of UBERON:0002167 ! right lung relationship: part_of UBERON:0002167 ! right lung -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb" xsd:anyURI [Term] id: UBERON:0002172 @@ -199696,8 +200145,13 @@ intersection_of: part_of UBERON:0002167 ! right lung relationship: contributes_to_morphology_of UBERON:0002167 ! right lung relationship: part_of UBERON:0002167 ! right lung property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/32/Gray972.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb" xsd:anyURI [Term] id: UBERON:0002175 @@ -199755,8 +200209,13 @@ intersection_of: continuous_with UBERON:0006518 ! right lung lobe relationship: continuous_with UBERON:0006518 ! right lung lobe property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-main-bronchus.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-main-bronchus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/main-bronchus-female/v1.0/assets/3d-vh-f-main-bronchus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/main-bronchus-male/v1.0/assets/3d-vh-m-main-bronchus.glb" xsd:anyURI property_value: taxon_notes "Divides into 3 lobar bronchi in humans" xsd:string {source="ISBN:0123813611"} [Term] @@ -199783,8 +200242,13 @@ intersection_of: continuous_with UBERON:0008951 ! left lung lobe relationship: continuous_with UBERON:0008951 ! left lung lobe property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-main-bronchus.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-main-bronchus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/main-bronchus-female/v1.0/assets/3d-vh-f-main-bronchus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/main-bronchus-male/v1.0/assets/3d-vh-m-main-bronchus.glb" xsd:anyURI property_value: taxon_notes "Divides into 2 lobar bronchi in humans" xsd:string {source="ISBN:0123813611"} [Term] @@ -199896,8 +200360,8 @@ relationship: distally_connected_to UBERON:0002183 ! lobar bronchus relationship: part_of RO:0002577 ! system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: proximally_connected_to UBERON:0003126 ! trachea -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-main-bronchus.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-main-bronchus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/main-bronchus-female/v1.0/assets/3d-vh-f-main-bronchus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/main-bronchus-male/v1.0/assets/3d-vh-m-main-bronchus.glb" xsd:anyURI property_value: taxon_notes "In humans, histologically identical to trachea." xsd:string [Term] @@ -199971,8 +200435,13 @@ relationship: part_of UBERON:0000101 {source="FMA"} ! lobe of lung relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: proximally_connected_to UBERON:0002183 ! lobar bronchus property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/df/Illu_quiz_lung05.jpg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb" xsd:anyURI [Term] id: UBERON:0002185 @@ -200009,8 +200478,14 @@ relationship: never_in_taxon NCBITaxon:8507 {source="Wikipedia"} ! Sphenodon relationship: part_of UBERON:0007196 ! tracheobronchial tree relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/18/Respiratory_system_complete_numbered.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.0/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb" xsd:anyURI property_value: external_definition "Each of the two primary divisions of the trachea leading respectively into the right and the left lung. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000262", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: has_relational_adjective "bronchial" xsd:string property_value: taxon_notes "In humans, the main bronchus is histologically identical to trachea; 2ary and 3ary bronchi are not; epithelium becomes simple columnar, goblet cell number decreases, elastic fibers in lamina propria increases, distribution more uniform. Muscular layer between mucosa and submucosa appears. cartilage rings become discontinuous plates connected by fibrous connective tissue" xsd:string @@ -200033,7 +200508,7 @@ xref: EHDAA:8221 xref: EMAPA:32697 xref: FMA:7410 xref: MA:0000422 -xref: MESH:D055745 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D055745 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C12684 xref: SCTID:278982001 xref: UMLS:C0006270 {source="ncithesaurus:Bronchiole"} @@ -200111,10 +200586,18 @@ xref: FMA:74285 xref: MA:0001649 is_a: UBERON:0001225 ! cortex of kidney relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.2/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.2/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb" xsd:anyURI [Term] id: UBERON:0002190 @@ -200135,7 +200618,7 @@ xref: BTO:0004042 xref: EMAPA:35829 xref: FMA:74315 xref: MA:0000473 -xref: MESH:D015434 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D015434 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} is_a: UBERON:0001013 ! adipose tissue is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001013 ! adipose tissue @@ -200261,8 +200744,14 @@ relationship: bounding_layer_of UBERON:0000029 ! lymph node relationship: composed_primarily_of UBERON:0002384 ! connective tissue relationship: part_of UBERON:0000029 ! lymph node relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-left/v1.0/assets/NIH_F_Lymph_Node_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-right/v1.0/assets/NIH_F_Lymph_Node_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.2/assets/NIH_F_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.2/assets/NIH_M_Lymph_Node.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/9/92/Lymphknoten_(Schwein).jpg" xsd:anyURI property_value: taxon_notes "from its internal surface are given off a number of membranous processes or trabeculae, consisting, in man, of connective tissue, with a small admixture of plain muscle fibers; but in many of the lower animals composed almost entirely of involuntary muscle[WP]" xsd:string @@ -200606,8 +201095,8 @@ intersection_of: part_of UBERON:0000019 ! camera-type eye relationship: develops_from UBERON:0003314 {source="ISBN:0781772214"} ! eye mesenchyme relationship: part_of UBERON:0000019 ! camera-type eye relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI property_value: external_ontology_notes "not part of the eye in ZFA. Note this changed to a blood vessel in ZFA" xsd:string {external_ontology="ZFA"} [Term] @@ -200645,10 +201134,10 @@ relationship: existence_ends_during UBERON:0000066 ! fully formed stage relationship: has_developmental_contribution_from UBERON:0000926 {notes="check ctenophore"} ! mesoderm relationship: has_part UBERON:0000383 ! musculature of body relationship: has_part UBERON:0001434 ! skeletal system +property_value: dc:contributor https://github.com/cmungall property_value: external_definition "Anatomical system that provides locomotion and physical support to the organism.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010546", ontology="AAO", source="AAO:EJS"} property_value: has_relational_adjective "musculoskeletal" xsd:string property_value: homology_notes "There are more than 50,000 extant vertebrate species, representing over 500 million years of evolution. During that time, the vertebrate musculoskeletal systems have adapted to aquatic, terrestrial, fossorial, and arboreal lifestyles, while simultaneously retaining functionally integrated axial and appendicular skeletal systems.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001275", ontology="VHOG", source="DOI:10.1002/jez.b.21246 Shearman RM, Burke AC, The lateral somitic frontier in ontogeny and phylogeny. Journal of Experimental Zoology (2009)", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall [Term] id: UBERON:0002205 @@ -200752,7 +201241,7 @@ synonym: "xyphoid" RELATED [Wikipedia:Xiphoid_process] xref: EMAPA:18725 xref: FMA:7488 xref: MA:0001334 -xref: MESH:D014989 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D014989 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C33895 xref: SCTID:272711000 xref: UMLS:C0043356 {source="ncithesaurus:Xiphoid_Process"} @@ -200821,6 +201310,7 @@ is_a: UBERON:0002213 ! cartilaginous joint id: UBERON:0002211 name: nerve root def: "A continuation of the neuron projection bundle component of a nerve inside, crossing or immediately outside the central nervous system." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/286] +subset: human_reference_atlas subset: uberon_slim synonym: "initial segment of nerve" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "radix nervi" EXACT OMO:0003011 [] @@ -200836,6 +201326,7 @@ relationship: extends_fibers_into UBERON:0001017 ! central nervous system relationship: extends_fibers_into UBERON:0001021 ! nerve relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0001016 {comment="EDITOR_NOTE we do not commit to CNS or PNS to allow for flexibility with this class"} ! nervous system +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: editor_note "We consider cranial nerve roots to be primarily CNS structures, but model spinal nerve roots as PNS structures, due to the existence of ganglia on the roots." xsd:string property_value: external_definition "The continuation of the neurite bundle and associated glia of a nerve, inside the central nervous system[FBbt:00007602, FBC:DOS]." xsd:string {source="FBbt:00007602, FBC:DOS"} property_value: external_ontology_notes "FMA has 'central zone of nerve' which is the superclass of cranial nerve tracts, which the FMA sometimes calls roots" xsd:string {external_ontology="FMA"} @@ -201036,7 +201527,7 @@ def: "Group of neurons situated on the ventral surface of the fornix at the leve subset: uberon_slim synonym: "organum subfornicale" RELATED OMO:0003011 [Wikipedia:Subfornical_organ] xref: BAMS:SFO -xref: BTO:0006266 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006266 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:12104 xref: EMAPA:35830 xref: FMA:75260 @@ -201109,9 +201600,9 @@ xref: ZFA:0001634 is_a: UBERON:0002384 {source="VSAO"} ! connective tissue relationship: bounding_layer_of UBERON:0007844 ! cartilage element relationship: part_of UBERON:0007844 ! cartilage element +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/wdahdul property_value: external_definition "Portion of connective tissue which surrounds cartilage.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001643", ontology="TAO", source="TAO:wd"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/wdahdul [Term] id: UBERON:0002223 @@ -201292,7 +201783,7 @@ xref: SCTID:302523002 xref: TAO:0000538 xref: UMLS:C0035561 {source="ncithesaurus:Rib"} xref: VHOG:0001154 -xref: VO:0012403 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: VO:0012403 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: Wikipedia:Rib xref: ZFA:0000538 is_a: UBERON:0002513 ! endochondral bone @@ -201489,7 +201980,7 @@ xref: BTO:0001721 xref: EMAPA:35262 xref: FMA:7591 xref: MA:0000106 -xref: MESH:D066186 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D066186 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32391 xref: SCTID:244703004 xref: UMLS:C0222787 {source="ncithesaurus:Costal_Cartilage"} @@ -201617,8 +202108,8 @@ relationship: part_of UBERON:0001017 ! central nervous system relationship: part_of UBERON:0001137 ! dorsum relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/58/Spinal_cord_direv.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI property_value: editor_note "TODO - add superclass to unify with VNC?" xsd:string property_value: external_definition "Part of the central nervous system which descends from the hindbrain within the vertebral column.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010151", ontology="AAO", source="AAO:BJB"} property_value: homology_notes "(...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (4) a single, tubular nerve cord that is located dorsal to the notochord (...) (reference 1); The neural tube is destined to differentiate into the brain and spinal cord (the central nervous system) (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000601", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.28, ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.165", source="http://bgee.unil.ch/"} @@ -201662,7 +202153,7 @@ xref: EMAPA:18008 xref: FMA:13550 xref: FMA:76703 xref: MA:0000112 -xref: MESH:D000070614 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D000070614 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:316586000 xref: Wikipedia:Nucleus_pulposus is_a: UBERON:0000062 ! organ @@ -202157,6 +202648,7 @@ property_value: editor_note "this section needs worked on for pan-vertebrate con id: UBERON:0002260 name: ventral root of spinal cord def: "The ventral roots contain efferent motor axons. Similar to the dorsal roots, the ventral roots continue out from the spinal column, and meet and mix with their corresponding dorsal nerve root at a point after the ganglion." [NLXANAT:20090209] +subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -202191,6 +202683,7 @@ xref: Wikipedia:Anterior_root_of_spinal_nerve xref: ZFA:0000705 is_a: UBERON:0009623 {different_relation_from="ZFA", source="FMA"} ! spinal nerve root relationship: contributes_to_morphology_of UBERON:0001780 ! spinal nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/d/d2/Spinal_nerve.svg" xsd:anyURI property_value: external_definition "The efferent motor root of a spinal nerve. At its distal end, the ventral root joins with the dorsal root to form a mixed spinal nerve[Wikipedia:Anterior_root_of_spinal_nerve]." xsd:string {source="Wikipedia:Anterior_root_of_spinal_nerve"} property_value: external_ontology_notes "FMA:77516 xref is a 'general anatomical term'. We xref both to ensure equivalence." xsd:string {external_ontology="FMA"} @@ -202243,7 +202736,7 @@ subset: human_reference_atlas subset: uberon_slim synonym: "coeliac ganglion" EXACT [FMA:77570] xref: BAMS:GCE -xref: BTO:0006296 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006296 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EHDAA2:0000266 xref: EHDAA:8946 xref: EMAPA:19321 @@ -202339,8 +202832,14 @@ relationship: part_of UBERON:0005366 ! olfactory lobe relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d2/1543%2CVesalius%27OlfactoryBulbs.jpg" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f9/1543,Vesalius%27OlfactoryBulbs.jpg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.0/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.0/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI property_value: development_notes "the olfactory bulbs develop as bilateral evaginations from a region of the prosencephalic neural plate intercalated between the septal and the cortical anlagen (Cobos et al. 2001b, Rubenstein et al. 1998). Comparing the structure of the olfactory bulb among vertebrate species, such as the leopard frog and the lab mouse, reveals that they all share the same fundamental layout(WP)." xsd:string property_value: external_definition "Part of the rostral part of the cerebrum where axons of olfactory cells from the nasal mucosa terminate. Projects onto olfactory parts of pallium via olfactory tracts" xsd:string {source="ISBN:0471888893"} property_value: external_definition "Part of the telencephalon comprised of anterior outgrowths of either of the cerebral hemispheres in which the olfactory nerve exits.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010165", ontology="AAO", source="AAO:BJB"} @@ -202426,8 +202925,14 @@ relationship: mutually_spatially_disjoint_with UBERON:0002893 {source="ABA"} ! n relationship: mutually_spatially_disjoint_with UBERON:0004069 {source="ABA"} ! accessory olfactory bulb relationship: part_of UBERON:0002894 ! olfactory cortex property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b1/Human_brainstem_anterior_view_2_description.JPG" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.0/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.0/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0002267 @@ -202474,7 +202979,7 @@ synonym: "organum olfactorium" RELATED [BTO:0001772] synonym: "primary olfactory organ" NARROW [] xref: AAO:0010180 xref: BTO:0001772 -xref: FBbt:00005158 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005158 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:77659 xref: VHOG:0000287 xref: XAO:0000273 @@ -203254,7 +203759,7 @@ synonym: "cochlear duct" RELATED [] xref: EMAPA:35751 xref: FMA:79789 xref: MA:0002458 -xref: MESH:D003053 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D003053 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: Wikipedia:Scala_media is_a: UBERON:0011060 {source="MA"} ! perilymphatic channel is_a: UBERON:0013685 ! foramen of skull @@ -203783,7 +204288,7 @@ xref: EMAPA:35927 xref: FMA:83929 xref: HBA:9218 xref: MA:0001135 -xref: MESH:D066127 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D066127 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C33892 xref: neuronames:2870 xref: NLX:412 @@ -203963,7 +204468,7 @@ synonym: "ventral body cavity" NARROW [NCBITaxon:7742] xref: AEO:0000186 xref: BTO:0001707 xref: EHDAA2:0000267 -xref: FBbt:00005060 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005060 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:85006 xref: galen:BodyCavity xref: NCIT:C25444 @@ -204105,6 +204610,8 @@ relationship: part_of UBERON:0011137 ! axial skeletal system relationship: produces PR:000014841 ! sonic hedgehog protein relationship: ventral_to UBERON:0001049 ! neural tube property_value: axiom_lost_from_external_ontology "relationship type change: differentiates_from mesoderm (AAO:0000304) CHANGED TO: develops_from mesoderm (UBERON:0000926)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000327", ontology="AAO"} +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/wdahdul property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png" xsd:anyURI property_value: development_notes "In between vertebra the notochord becomes the nucleus pulposus, under it degenerates, and at anterior end in some species its tissue merges with some of the cranial bones.. Some organisms retain a post-embryonic notochord." xsd:string property_value: external_definition "Avascular multi-tissue structure composed of large vacuolated epithelial cells (chordablasts) and perichordal fibrous tissue.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000032", ontology="VSAO", source="PSPUB:0000170"} @@ -204112,8 +204619,6 @@ property_value: external_definition "Rod-like principal supportive element of th property_value: external_definition "Slender rod of fibrous connective tissue surrounding a core of fluid-filled cells of mesodermal origin; it lies above the gut and directly beneath the spinal cord. The notochord is present during early development and in a few cases it is retained through life; however, usually the notochord is replaced by the vertebral column.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000327", ontology="AAO", source="AAO:LAP"} property_value: has_relational_adjective "notochordal" xsd:string property_value: homology_notes "(...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (3) a stiff, longitudinal rod of turgid cells along the dorsal part of the body that is called a notochord (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000199", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.28", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/wdahdul [Term] id: UBERON:0002329 @@ -204228,7 +204733,7 @@ relationship: connects UBERON:0001987 ! placenta relationship: develops_from UBERON:0007806 ! connecting stalk relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f3/Umbilicalcord.jpg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Placenta.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/placenta-full-term-female/v1.0/assets/VH_F_Placenta.glb" xsd:anyURI property_value: external_definition "The connecting cord from the developing embryo or fetus to the placenta. During prenatal development, the umbilical cord comes from the same zygote as the fetus and (in humans) normally contains two arteries (the umbilical arteries) and one vein (the umbilical vein), buried within Wharton's jelly. The umbilical vein supplies the fetus with oxygenated, nutrient-rich blood from the placenta.property_value, external_definition the umbilical arteries return the deoxygenated, nutrient-depleted blood[WP]." xsd:string {source="Wikipedia:Umbilical_cord"} property_value: has_relational_adjective "umbilical" xsd:string @@ -204258,8 +204763,12 @@ relationship: continuous_with UBERON:0002080 {gci_relation="part_of", gci_filler relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0008886 ! pulmonary vascular system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png" xsd:anyURI property_value: external_definition "An arterial trunk with origin from the right ventricle of the heart, and dividing into the right and left pulmonary arteries, which enter the corresponding lungs and branch with the bronchi. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001134", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/pulmonary+trunk"} property_value: homology_notes "As in birds, the conus arteriosus split during embryonic development in mammals to produce the pulmonary trunk and single aortic trunk of the adult.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001134", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.481", source="http://bgee.unil.ch/"} @@ -204353,8 +204862,12 @@ relationship: never_in_taxon NCBITaxon:9255 {source="Wikipedia"} ! Monotremata relationship: only_in_taxon NCBITaxon:9347 {source="Wikipedia"} ! Eutheria relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/aa/Gray733.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI property_value: external_definition "The largest commissure of the brain connecting the cerebral hemispheres. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001608", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/corpus+callosum"} property_value: homology_notes "In addition to the anterior commissure, placental mammals have a phylogenetically new forebrain commissure, the corpus callosum, which primarily interconnects the neocortex of the cerebral hemispheres.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001608", ontology="VHOG", source="DOI:10.1111/j.1749-6632.1969.tb20447.x Ebner FF, A comparison of primitive forebrain organization in metatherian and eutherian mammals. Annals of the New York Academy of Sciences (1969)", source="http://bgee.unil.ch/"} property_value: taxon_notes "The corpus callosum is found only in placental mammals. other groups do have other brain structures that allow for communication between the two hemispheres, such as the anterior commissure, which serves as the primary mode of interhemispheric communication in marsupials." xsd:string {source="Wikipedia:Corpus_callosum#Species_Differences"} @@ -204616,7 +205129,7 @@ xref: EHDAA:1498 xref: EHDAA:255 xref: EMAPA:16073 xref: EV:0100004 -xref: FBbt:00001057 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001057 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:87657 xref: MAT:0000176 xref: MIAA:0000176 @@ -205386,7 +205899,8 @@ relationship: develops_from UBERON:0003820 ! prostate bud relationship: only_in_taxon NCBITaxon:40674 {source="Wikipedia"} ! Mammalia relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a1/Prostatelead.jpg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb" xsd:anyURI property_value: editor_note "TODO - FMA treats the gland as part of the prostate - see also FMA:74119." xsd:string property_value: has_relational_adjective "prostatic" xsd:string @@ -205523,9 +206037,12 @@ relationship: part_of UBERON:0000949 {source="XAO"} ! endocrine system relationship: part_of UBERON:0002390 {source="FMA", source="MA"} ! hematopoietic system relationship: part_of UBERON:0002405 {source="XAO"} ! immune system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Thymus.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Thymus.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.0/assets/VH_F_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.1/assets/VH_F_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.2/assets/VH_F_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.0/assets/VH_M_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.1/assets/VH_M_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.2/assets/VH_M_Thymus.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/c/cf/Illu_thymus.jpg" xsd:anyURI property_value: editor_note "check - a subtype of gland? not in GO. NCIT has thymus and thymus gland. EHDAA2 has ductless gland." xsd:string property_value: external_definition "Anatomical structure which originates as several paired thickenings on the dorsal side of the pharyngeal pouches and secretes thymosin.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010548", ontology="AAO", source="AAO:BJB"} @@ -205586,7 +206103,6 @@ id: UBERON:0002372 name: tonsil def: "Either of the two small almond-shaped masses of lymph tissue found on either side of the oropharynx." [MGI:cwg, MP:0002380] subset: efo_slim -subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "Mandel" RELATED [BTO:0001387] @@ -205612,7 +206128,6 @@ disjoint_from: UBERON:0005351 ! paraflocculus relationship: contributes_to_morphology_of UBERON:0001735 ! tonsillar ring relationship: located_in UBERON:0000167 ! oral cavity relationship: part_of UBERON:0001735 {source="cjm"} ! tonsillar ring -relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: curator_notes "the term 'tonsil' can be ambiguous, sometimes refering specifically to the palatine tonsil, sometimes generically to include the cecal tonsils of avians. This class represents lymphoid tissue that is part of the tonsillar ring, in the mouth/throat region" xsd:string [Term] @@ -205620,6 +206135,7 @@ id: UBERON:0002373 name: palatine tonsil def: "Tonsils on the left and right sides at the back of the throat. one of the mucosa-associated lymphoid tissues (MALT), located at the entrance to the upper respiratory and gastrointestinal tracts to protect the body from the entry of exogenous material through mucosal sites[WP]." [Wikipedia:Palatine_tonsil] subset: efo_slim +subset: human_reference_atlas subset: uberon_slim synonym: "faucial tonsil" EXACT [] synonym: "tonsil" BROAD [] @@ -205631,7 +206147,7 @@ xref: EV:0100393 xref: FMA:9610 xref: MA:0000775 xref: MAT:0000291 -xref: MESH:D014066 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D014066 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MIAA:0000291 xref: NCIT:C33250 xref: SCTID:265787001 @@ -205643,6 +206159,7 @@ is_a: UBERON:0004119 ! endoderm-derived structure relationship: develops_from UBERON:0010023 {notes="the dorsal elongation of the second pouch endoderm of all mammals, with the exception of rodents, gives rise to the epithelial lining of palatine tonsils; in rodents, the ventral portion of the second pouch appears to degenerate whereas the remaining part is incorporated into the lateral border of the pharynx; it appears that rodents no longer require tonsils as their function is carried out by the NALT (Nose/Nasal-Associated Lymphoid Tissue) system in the upper respiratory tract", source="ISBN:1607950324", source="MP:anna", source="PMID:20144910"} ! dorsal part of pharyngeal pouch 2 relationship: dubious_for_taxon NCBITaxon:9989 {source="PMID:20144910"} ! Rodentia relationship: has_developmental_contribution_from UBERON:0002539 {source="Wikipedia"} ! pharyngeal arch +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/f/f6/Illu_mouth.jpg" xsd:anyURI property_value: development_notes "tonsillar fossa develops from dorsal portion of pouch 2. Note that pharyngeal and lingual tonsils do not develop from pharyngeal pouches" xsd:string {source="ISBN:1607950324"} @@ -205706,14 +206223,14 @@ xref: Wikipedia:Cricoid_cartilage is_a: UBERON:0001739 {source="MA"} ! laryngeal cartilage relationship: composed_primarily_of UBERON:0001994 {source="Wikipedia"} ! hyaline cartilage tissue relationship: develops_from UBERON:0010214 {source="EHDAA2"} ! cricoid pre-cartilage condensation +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/RDruzinsky property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/54/Gray1194.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-larynx.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.0/assets/3d-vh-f-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.0/assets/3d-vh-m-larynx.glb" xsd:anyURI property_value: external_definition "Cartilaginous ring that provides support for the arytenoid cartilages. Its ventral part is bent posteriorly to form a V.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000675", ontology="AAO", source="AAO:LAP"} property_value: external_definition "The ringlike cartilage forming the caudal part of the larynx. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001308", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/cricoid+cartilage"} property_value: homology_notes "(In anura) a dorsal pair of arytenoid cartilages (...), which support vocal cords, and a ventral pair (often fused) of cricoid cartilage (...). These cartilages are regarded as derivatives of posterior visceral arches of ancestors. Together they constitute the larynx, a structure characteristic of tetrapods. (...) (In mammals) Paired arytenoid cartilages help support and control the vocal cords. The cricoid cartilage is single. Two additional cartilages are present that are lacking in other vertebrates: a large ventral thyroid cartilage (...) and a cartilage in the epiglottis.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001308", ontology="VHOG", source="ISBN:978-0471090588 Hildebrand M, Analysis of vertebrate structure (1983) p.239-241", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/RDruzinsky [Term] id: UBERON:0002376 @@ -205995,12 +206512,12 @@ is_a: UBERON:0000479 ! tissue relationship: has_part GO:0031012 ! extracellular matrix relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/wdahdul property_value: external_definition "One of the four types of tissue in traditional classifications. It is largely a category of exclusion rather than one with a precise definition, but there are certain characteristics shared by all or most tissues in this category, such as involvement in structure and support, derived from mesoderm, and characterized largely by the traits of non-living tissue.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000098", ontology="AAO", source="AAO:LAP"} property_value: external_definition "Portion of tissue that consists of mesodermally derived cells and intercellular matrix comprised of protein fibers and carbohydrates, which supports, ensheathes and binds together other tissues.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001641", ontology="TAO", source="TAO:wd"} property_value: external_definition "Tissue with cells that deposit non-polarized extracellular matrix including connective tissue fibers and ground substance.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000017", ontology="VSAO", source="GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070", source="PSPUB:0000170"} property_value: external_ontology_notes "MA also has set of connective tissues" xsd:string {external_ontology="MA"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/wdahdul [Term] id: UBERON:0002385 @@ -206332,7 +206849,7 @@ xref: EV:0100359 xref: FMA:9705 xref: GAID:869 xref: MA:0000255 -xref: MESH:D005064 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D005064 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C12500 xref: UMLS:C0015183 {source="ncithesaurus:Eustachian_Tube"} xref: VHOG:0001145 @@ -206439,7 +206956,7 @@ synonym: "vomer bone" EXACT [] xref: AAO:0000633 xref: FMA:9710 xref: MA:0001496 -xref: MESH:D055172 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D055172 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C33888 xref: SCTID:272678009 xref: TAO:0000308 @@ -206863,7 +207380,7 @@ subset: uberon_slim xref: BTO:0001016 xref: FMA:9887 xref: MA:0002530 -xref: MESH:D000069236 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D000069236 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: Wikipedia:Pericardial_fluid is_a: UBERON:0007794 {source="FMA"} ! secretion of serous gland is_a: UBERON:0036217 ! coelomic fluid @@ -206897,7 +207414,7 @@ xref: EHDAA:3767 xref: EMAPA:16984 xref: FMA:65553 xref: GAID:706 -xref: IDOMAL:0002126 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: IDOMAL:0002126 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: MA:0000219 xref: MESH:D001341 xref: NCIT:C12673 @@ -206961,7 +207478,7 @@ subset: vertebrate_core synonym: "vertebra bone" EXACT [] synonym: "vertebrae" EXACT OMO:0003004 [PHENOSCAPE:ad] xref: AAO:0000691 -xref: BTO:0006196 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006196 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: CALOHA:TS-2352 xref: EFO:0001371 xref: EMAPA:32740 @@ -207103,7 +207620,7 @@ xref: EHDAA2_RETIRED:0003154 xref: EHDAA:6520 xref: EMAPA:17524 xref: EV:0100151 -xref: FBbt:00004969 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004969 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:72979 xref: galen:Surface xref: HAO:0000421 @@ -207127,9 +207644,9 @@ relationship: existence_ends_during UBERON:0000066 ! fully formed stage relationship: has_part UBERON:0007376 ! outer epithelium relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: surrounded_by UBERON:0013514 ! space surrounding organism +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tfhayamizu property_value: homology_notes "(...) the integument of many tetrapods is reinforced by a morphologically and structurally diverse assemblage of skeletal elements. These elements are widely understood to be derivatives of the once all-encompassing dermal skeleton of stem-gnathostomes (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000403", ontology="VHOG", source="DOI:10.1111/j.1469-7580.2008.01043.x Vickaryous MK, Sire JY, The integumentary skeleton of tetrapods: origin, evolution, and development. J Anat (2009)", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tfhayamizu [Term] id: UBERON:0002417 @@ -207194,13 +207711,13 @@ relationship: has_part CL:0000138 ! chondrocyte relationship: only_in_taxon NCBITaxon:33213 ! Bilateria relationship: part_of UBERON:0002204 ! musculoskeletal system property_value: axiom_lost_from_external_ontology "relationship loss: subclass specialized connective tissue (AAO:0000571)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000060", ontology="AAO"} +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/ee/Hypertrophic_Zone_of_Epiphyseal_Plate.jpg" xsd:anyURI property_value: external_definition "A type of dense connective tissue. It is composed of cells called chondrocytes which are dispersed in a firm gel-like ground substance, called the matrix. Cartilage is avascular (contains no blood vessels) and nutrients are diffused through the matrix. Cartilage is found in the joints, the rib cage, the ear, the nose, in the throat and between intervertebral disks. It makes up virtually the entire skeleton in chondrichthyes.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000060", ontology="AAO", source="AAO:LAP"} property_value: external_definition "Portion of tissue which is connective tissue composed of collagen and/or elastin fibers and chondrocytes. Cartilage is avascular and provides both skeletal functions and a framework upon which bone is deposited.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001501", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Skeletal tissue that is avascular, rich in glycosaminoglycans (GAGs) and typically includes chondrocytes within isolated lacunae. Cartilage tissue is deposited by chondroblasts.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000040", ontology="VSAO", source="GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070", source="PSPUB:0000170"} property_value: homology_notes "Phylogenetic analysis suggests that cartilage arose independently in cnidarians, hemichordates, vertebrates, arthropods, annelids, brachiopods, and molluscs - or a common ancestor of brachiopods and molluscs (...). Analyses of cartilage as a tissue and of the development of invertebrate cartilages are consistent with homology between invertebrate and vertebrate cartilage. From the discussion above, it will be clear that understanding genetic changes underlying cartilage evolution is key to determining whether the multiple origins of cartilage represent parallel evolution.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001207", ontology="VHOG", source="DOI:10.1111/j.1525-142X.2011.00520.x Hall BK, Parallelism, deep homology, and evo-devo. Evolution and Development (2012)", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly [Term] id: UBERON:0002419 @@ -207341,8 +207858,12 @@ relationship: develops_from UBERON:0013149 {source="EHDAA2"} ! hindbrain vesicle relationship: part_of UBERON:0002028 ! hindbrain relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray734.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI property_value: external_definition "Fluid-filled brain cavity. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000110", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Irregularly shaped cavity in the rhombencephalon, between the medulla oblongata, the pons, and the isthmus in front, and the cerebellum behind. It is continuous with the central canal of the cord below and with the cerebral aqueduct above, and through its lateral and median apertures it communicates with the subarachnoid space.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0011043", ontology="AAO", source="UBERON:0002422"} property_value: external_definition "The fourth ventricle is an irregularly shaped cavity in the rhombencephalon, between the medulla oblongata, the pons, and the isthmus in front, and the cerebellum behind. It is continuous with the central canal of the cord below and with the cerebral aqueduct above, and through its lateral and median apertures it communicates with the subarachnoid space[GO][GO:0021592]." xsd:string {source="GO:0021592"} @@ -207557,7 +208078,7 @@ xref: BAMS:LH xref: BAMS:LHA xref: BIRNLEX:4037 xref: BM:Die-Hy-HLA -xref: BTO:0006481 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006481 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EMAPA:35480 xref: FMA:62030 xref: GAID:640 @@ -208100,10 +208621,10 @@ relationship: connected_to UBERON:0001433 {gci_relation="part_of", gci_filler="N relationship: postaxialmost_part_of UBERON:0009880 ! carpal skeleton relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: proximally_connected_to UBERON:0001424 ! ulna +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/50/Carpus.png" xsd:anyURI property_value: external_definition "One of two element that constitute the basal row of carpals. It articulates with the ulna, radius, radiale, centrale (element Y), and carpal 5(4). This element originates from one condensation center or the fusion of two elements (ulnare and intermedium). Occasionally it may fuse to carpal 5(4), the radiale, or other elements.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000845", ontology="AAO", source="AAO:LAP"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly property_value: terminology_notes "this bone is termed the triquetral bone in some mammalian taxa, notably humans" xsd:string [Term] @@ -208690,7 +209211,7 @@ xref: BTO:0002859 xref: EMAPA:26981 xref: FMA:62996 xref: MA:0002680 -xref: MESH:D000071041 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D000071041 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32538 xref: SCTID:362127004 xref: UMLS:C0227176 {source="ncithesaurus:Esophageal_Mucosa"} @@ -208768,10 +209289,10 @@ intersection_of: has_skeleton UBERON:0011584 ! zeugopodial skeleton relationship: distal_to UBERON:0002472 ! stylopod relationship: has_skeleton UBERON:0011584 ! zeugopodial skeleton relationship: proximal_to UBERON:0002470 ! autopod region +property_value: dc:contributor https://github.com/alex-dececchi +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: has_relational_adjective "zeugopodial" xsd:string -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/alex-dececchi -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly [Term] id: UBERON:0002472 @@ -208851,6 +209372,7 @@ property_value: editor_note "TODO - this requires work for making consistent wit id: UBERON:0002475 name: saphenous nerve def: "The largest cutaneous branch of the femoral nerve. [WP,unvetted]." [Wikipedia:Saphenous_nerve] +subset: human_reference_atlas subset: uberon_slim synonym: "nervus saphenus" RELATED OMO:0003011 [Wikipedia:Saphenous_nerve] xref: EMAPA:36625 @@ -208861,6 +209383,7 @@ xref: Wikipedia:Saphenous_nerve is_a: UBERON:0003431 ! leg nerve relationship: branching_part_of UBERON:0001267 ! femoral nerve relationship: part_of UBERON:0001267 ! femoral nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/de/Gray827.png" xsd:anyURI [Term] @@ -209186,8 +209709,12 @@ relationship: has_part UBERON:0008867 ! trabecular network of bone relationship: has_quality PATO:0002519 ! cancellous relationship: part_of UBERON:0002482 ! lamellar bone property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/34/Illu_compact_spongy_bone.jpg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.0/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.1/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.2/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.0/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.1/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.2/assets/VH_M_Pelvis.glb" xsd:anyURI [Term] id: UBERON:0002484 @@ -209232,7 +209759,8 @@ intersection_of: part_of UBERON:0002367 ! prostate gland relationship: contributes_to_morphology_of UBERON:0002367 ! prostate gland relationship: develops_from UBERON:0003820 {source="PMID:18977204"} ! prostate bud relationship: part_of UBERON:0002367 ! prostate gland -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb" xsd:anyURI [Term] id: UBERON:0002486 @@ -209406,7 +209934,7 @@ subset: uberon_slim synonym: "arteria uterina" RELATED OMO:0003011 [Wikipedia:Uterine_artery] xref: FMA:18829 xref: MA:0002799 -xref: MESH:D055988 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D055988 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:244300003 xref: Wikipedia:Uterine_artery is_a: UBERON:0001190 ! ovarian artery @@ -209451,8 +209979,12 @@ xref: Wikipedia:Papillary_muscle is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002082 ! cardiac ventricle -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/8/87/Papillary_muscles.png" xsd:anyURI property_value: function_notes "These muscles contract to tighten the chordae tendineae, which in turn prevent inversion. This occurs in response to pressure gradients. Instead they brace the valves against the high pressure, preventing regurgitation of ventricular blood back into the atrial cavities.[Wikipedia:Papillary_muscle]" xsd:string property_value: homology_notes "On the internal or parietal surface of the left ventricle in man and in mammals are two papillary muscles, which are almost identical and well developed.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001392", ontology="VHOG", source="DOI:10.1111/j.1368-5031.2005.00345.x", source="http://bgee.unil.ch/"} @@ -209477,8 +210009,8 @@ xref: Wikipedia:Long_bone is_a: UBERON:0001474 ! bone element relationship: contributes_to_morphology_of UBERON:0002091 ! appendicular skeleton relationship: part_of UBERON:0002091 ! appendicular skeleton -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/wdahdul +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/wdahdul [Term] id: UBERON:0002496 @@ -209803,8 +210335,10 @@ intersection_of: UBERON:0002507 ! abdominal lymph node intersection_of: part_of UBERON:0002095 ! mesentery relationship: part_of UBERON:0002095 ! mesentery relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.2/assets/NIH_F_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.2/assets/NIH_M_Lymph_Node.glb" xsd:anyURI [Term] id: UBERON:0002510 @@ -209920,13 +210454,13 @@ intersection_of: develops_from UBERON:0005863 ! cartilaginous condensation relationship: developmentally_replaces UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0005863 ! cartilaginous condensation relationship: develops_from UBERON:0007844 {source="VSAO"} ! cartilage element +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly +property_value: dc:contributor https://github.com/wdahdul property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/ee/Hypertrophic_Zone_of_Epiphyseal_Plate.jpg" xsd:anyURI property_value: editor_note "placement in this class to be inferred" xsd:string property_value: external_definition "Replacement bone that forms within cartilage.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000145", ontology="VSAO", source="GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070", source="PSPUB:0000170"} property_value: external_ontology_notes "some structures, e.g. in ZFA are both intramembrane and endochondral" xsd:string {external_ontology="ZFA"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/wdahdul property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern" xsd:anyURI [Term] @@ -210300,7 +210834,7 @@ xref: EFO:0000797 xref: EHDAA2:0003096 xref: EHDAA:2161 xref: EMAPA:18425 -xref: FBbt:00100317 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00100317 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:7146 xref: FMA:86294 xref: galen:Gland @@ -210439,7 +210973,7 @@ subset: uberon_slim synonym: "sensillum" EXACT [FBbt:00007152, HAO:0000933] xref: BTO:0001237 xref: EFO:0000939 -xref: FBbt:00007152 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007152 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000933 xref: MAT:0000163 xref: MIAA:0000163 @@ -210554,7 +211088,7 @@ xref: AAO:0000269 xref: AAO:0000975 xref: EFO:0000941 xref: MAT:0000249 -xref: MESH:D053403 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D053403 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MIAA:0000249 xref: TAO:0000034 xref: VHOG:0001243 @@ -210671,12 +211205,12 @@ relationship: part_of UBERON:0012140 {source="PHENOSCAPE:ni"} ! digitopodium reg relationship: part_of UBERON:0012354 ! acropodium region relationship: part_of UBERON:5002544 ! digit plus metapodial segment property_value: curator_notes "this class represents the entire organism subdivision encompassing soft tissue as well as the underlying skeletal framework. The class represents the phalangeal part only - historically the term 'digit' has also been used to represent the unit consisting of a series of phalanges together with a metapodial bone. We may in future relabel this class to avoid confusion with this concept, but the class will continue to represent the phalangeal portion" xsd:string +property_value: dc:contributor https://github.com/alex-dececchi +property_value: dc:contributor https://github.com/balhoff +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/wdahdul property_value: has_relational_adjective "digital" xsd:string property_value: homology_notes "Our reinterpretation of the distal fin endoskeleton of Panderichthys removes the final piece of evidence supporting the formerly popular hypothesis that tetrapod digits are wholly new structures without homologues in sarcopterygian fish fins. This hypothesis, which was based partly on the complete absence of plausible digit homologues in Panderichthys (then the closest known relative of tetrapods), has already been called into question by the discovery of digit-like radials in Tiktaalik and the fact that Hox gene expression patterns closely resembling those associated with digit formation in tetrapods occur in the distal fin skeletons of paddlefish and Australian lungfish. Our new data show that Panderichthys is not an anomaly: like Tiktaalik and other fish members of the Tetrapodomorpha, it has distal radials that can be interpreted as digit homologues.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000944", ontology="VHOG", source="DOI:10.1038/nature07339 Boisvert CA, Mark-Kurik E and Ahlberg PE, The pectoral fin of Panderichthys and the origin of digits. Nature (2008)", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/alex-dececchi -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/balhoff -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/wdahdul [Term] id: UBERON:0002545 @@ -210746,9 +211280,9 @@ synonym: "wriggler" NARROW [Wikipedia:Larva] synonym: "zoea" NARROW [Wikipedia:Larva] xref: AEO:0000126 xref: BTO:0000707 -xref: FBbt:00001727 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001727 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000459 -xref: MESH:D007814 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D007814 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: TAO:0002048 xref: Wikipedia:Larva is_a: UBERON:0000468 ! multicellular organism @@ -211114,8 +211648,12 @@ xref: UMLS:C0262268 {source="BIRNLEX:1036"} is_a: UBERON:0007193 ! orbital gyrus disjoint_from: UBERON:0002570 {source="lexical"} ! medial orbital gyrus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0002565 @@ -211258,8 +211796,12 @@ xref: SCTID:279194002 xref: UMLS:C0175179 {source="BIRNLEX:1046"} is_a: UBERON:0007193 ! orbital gyrus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0002571 @@ -211380,8 +211922,12 @@ intersection_of: part_of UBERON:0001871 ! temporal lobe relationship: part_of UBERON:0001871 ! temporal lobe relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e3/Human_brain_lateral_view_description.JPG" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0002577 @@ -211489,8 +212035,12 @@ is_a: UBERON:0000200 ! gyrus relationship: contributes_to_morphology_of UBERON:0001872 ! parietal lobe relationship: part_of UBERON:0001872 ! parietal lobe relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/6/66/Postcentral_gyrus.png" xsd:anyURI [Term] @@ -211984,7 +212534,7 @@ xref: CALOHA:TS-2061 xref: DHBA:12155 xref: FMA:72719 xref: HBA:4219 -xref: MESH:D065726 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D065726 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:834 {source="BIRNLEX:1128"} xref: SCTID:279215006 xref: UMLS:C0458337 {source="BIRNLEX:1128"} @@ -212141,7 +212691,7 @@ synonym: "neuropilus" RELATED OMO:0003011 [Wikipedia:Neuropil] xref: BIRNLEX:1142 xref: BTO:0005268 xref: CALOHA:TS-2403 -xref: FBbt:00005139 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005139 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:261269 xref: GAID:740 xref: MESH:D019581 @@ -212555,7 +213105,7 @@ xref: BTO:0004676 xref: EFO:0001987 xref: FMA:62394 xref: MBA:924 -xref: MESH:D065850 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D065850 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32291 xref: neuronames:487 {source="BIRNLEX:1202"} xref: SCTID:362391000 @@ -212568,8 +213118,12 @@ relationship: has_part UBERON:0002038 ! substantia nigra relationship: part_of UBERON:0001891 ! midbrain relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray689.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0002624 @@ -212609,7 +213163,7 @@ xref: BAMS:MEPO xref: BAMS:MnPO xref: BIRNLEX:1208 xref: BM:MPO -xref: BTO:0006168 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006168 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:13063 xref: FMA:62323 xref: HBA:4548 @@ -212706,8 +213260,12 @@ is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002998 {source="FMA"} ! inferior frontal gyrus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0002630 @@ -212756,7 +213314,7 @@ xref: EMAPA:37499 {source="MA:th"} xref: EV:0100243 xref: FMA:72464 xref: MA:0001056 -xref: MESH:D065843 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D065843 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32409 xref: neuronames:539 {source="BIRNLEX:1218"} xref: UMLS:C0175414 {source="BIRNLEX:1218"} @@ -212829,7 +213387,7 @@ xref: FMA:54562 xref: HBA:9206 xref: MA:0001029 xref: MBA:621 -xref: MESH:D066266 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D066266 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C33140 xref: neuronames:559 {source="BIRNLEX:1222"} xref: SCTID:38390003 @@ -213005,7 +213563,7 @@ xref: DHBA:12239 xref: EMAPA:35570 xref: FMA:62406 xref: HBA:9018 -xref: MESH:D066265 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D066265 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:501 {source="BIRNLEX:1235"} xref: SCTID:369234009 xref: UMLS:C0228394 {source="BIRNLEX:1235"} @@ -213117,8 +213675,12 @@ xref: FMA:80183 xref: OldNeuroNames:-1278177547 {source="BIRNLEX:1247"} is_a: UBERON:0007193 ! orbital gyrus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0002645 @@ -213439,8 +214001,12 @@ is_a: UBERON:0000200 ! gyrus disjoint_from: UBERON:0022383 {source="lexical"} ! anterior parahippocampal gyrus relationship: part_of UBERON:0002973 {source="FMA"} ! parahippocampal gyrus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0002658 @@ -213532,8 +214098,12 @@ xref: Wikipedia:Superior_frontal_gyrus is_a: UBERON:0015593 ! frontal gyrus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/50/Superior_frontal_gyrus.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0002662 @@ -214011,7 +214581,7 @@ xref: FMA:54504 xref: HBA:9136 xref: MA:0001010 xref: MBA:653 -xref: MESH:D065827 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D065827 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C12836 xref: neuronames:585 {source="BIRNLEX:1366"} xref: SCTID:280165008 @@ -214082,7 +214652,7 @@ xref: FMA:72585 xref: HBA:9646 xref: MA:0002981 xref: MBA:222 -xref: MESH:D065849 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D065849 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:740 {source="BIRNLEX:1369"} xref: UMLS:C0175516 {source="BIRNLEX:1369"} xref: Wikipedia:Nucleus_raphe_obscurus @@ -214225,14 +214795,14 @@ xref: BAMS:OV xref: BAMS:SoC xref: BAMS:VOLT xref: BIRNLEX:1400 -xref: BTO:0006268 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006268 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:12106 xref: DMBA:15582 xref: EMAPA:37742 {source="MA:th"} xref: FMA:62315 xref: MA:0003018 xref: MBA:763 -xref: MESH:D066278 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D066278 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:383 {source="BIRNLEX:1400"} xref: NLXANAT:100313 xref: UMLS:C0175316 {source="BIRNLEX:1400"} @@ -214599,8 +215169,12 @@ xref: Wikipedia:Middle_frontal_gyrus is_a: UBERON:0015593 ! frontal gyrus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7f/Middle_frontal_gyrus.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0002703 @@ -214628,8 +215202,12 @@ xref: Wikipedia:Precentral_gyrus is_a: UBERON:0015593 ! frontal gyrus relationship: part_of UBERON:0001870 ! frontal cortex property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/eb/Ba4.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0002704 @@ -214653,7 +215231,7 @@ xref: EV:0100217 xref: FMA:62023 xref: MA:0000868 xref: MBA:1008 -xref: MESH:D005829 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D005829 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:351 {source="BIRNLEX:1461"} xref: SCTID:361550004 xref: Wikipedia:Metathalamus @@ -214692,7 +215270,7 @@ xref: EMAPA:35573 xref: FMA:62020 xref: MA:0000864 xref: MBA:571 -xref: MESH:D020644 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D020644 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:306 {source="BIRNLEX:1462"} xref: SCTID:279163002 xref: Wikipedia:Midline_nuclear_group @@ -214756,7 +215334,7 @@ xref: BAMS:P xref: BIRNLEX:1464 xref: BM:CST xref: BM:Me-PyT -xref: BTO:0006132 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006132 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:12776 xref: DMBA:17756 xref: EMAPA:36600 @@ -215015,7 +215593,7 @@ synonym: "tractus rubrospinalis" RELATED OMO:0003011 [Wikipedia:Rubrospinal_trac xref: BAMS:rs xref: BAMS:rust xref: BIRNLEX:1476 -xref: BTO:0006159 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006159 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:12782 xref: DMBA:17792 xref: FMA:72640 @@ -215316,7 +215894,7 @@ synonym: "segmenta cervicalia medullae spinalis [1-8" EXACT OMO:0003011 [FMA:711 xref: BIRNLEX:1499 xref: FMA:71166 xref: MA:0003081 -xref: MESH:D066193 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D066193 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C12892 xref: neuronames:1654 xref: SCTID:180960003 @@ -215657,8 +216235,12 @@ is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002967 ! cingulate gyrus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0002739 @@ -215742,8 +216324,12 @@ disjoint_from: UBERON:0002756 {source="lexical"} ! anterior cingulate gyrus relationship: part_of UBERON:0002967 ! cingulate gyrus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/fe/Gray727.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0002741 @@ -215824,7 +216410,7 @@ xref: DHBA:10349 xref: EMAPA:35164 xref: FMA:77700 xref: HBA:4300 -xref: MESH:D066187 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D066187 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:1997 {source="BIRNLEX:1560"} xref: PBA:128012976 xref: Wikipedia:Basal_forebrain @@ -215960,7 +216546,7 @@ synonym: "lateral occipitotemporal gyrus (heimer-83)" EXACT [] xref: BAMS:ITG xref: BIRNLEX:1577 xref: BM:Tel-ITG -xref: BTO:0006175 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006175 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:12142 xref: FMA:61907 xref: HBA:4147 @@ -215974,8 +216560,12 @@ relationship: capable_of_part_of GO:0007601 {source="Wikipedia"} ! visual percep relationship: part_of UBERON:0001871 ! temporal lobe relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/35/Gray726.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0002752 @@ -215989,7 +216579,7 @@ synonym: "tractus olivocerebellaris" RELATED OMO:0003011 [NeuroNames:804] xref: BAMS:oc xref: BAMS:oct xref: BIRNLEX:1579 -xref: BTO:0006157 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006157 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:12747 xref: FMA:72638 xref: MBA:404 @@ -216040,7 +216630,7 @@ synonym: "tectospinal fibers" EXACT [FMA:72614] xref: BAMS:pd xref: BIRNLEX:1590 xref: FMA:72614 -xref: MESH:D065844 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D065844 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:780 {source="BIRNLEX:1590"} xref: UMLS:C0175542 {source="BIRNLEX:1590"} is_a: UBERON:0005838 {source="FMA"} ! fasciculus of brain @@ -216106,8 +216696,12 @@ relationship: part_of UBERON:0002967 ! cingulate gyrus relationship: part_of UBERON:0009835 ! anterior cingulate cortex relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/22/Gray727_anterior_cingulate_cortex.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0002757 @@ -216449,7 +217043,7 @@ synonym: "gyrus temporalis superior" RELATED OMO:0003011 [Wikipedia:Superior_tem xref: BAMS:STG xref: BIRNLEX:1648 xref: BM:Tel-STG -xref: BTO:0006177 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006177 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:12140 xref: EFO:0001944 xref: FMA:61905 @@ -216465,8 +217059,12 @@ relationship: contributes_to_morphology_of UBERON:0001871 ! temporal lobe relationship: part_of UBERON:0001871 ! temporal lobe relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1d/Superior_temporal_gyrus.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0002770 @@ -216505,7 +217103,7 @@ synonym: "medial temporal gyrus" RELATED [Wikipedia:Middle_temporal_gyrus] synonym: "middle (medial) temporal gyrus" RELATED [BAMS:MTG] xref: BAMS:MTG xref: BIRNLEX:1653 -xref: BTO:0006176 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006176 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:12141 xref: EFO:0002466 xref: FMA:61906 @@ -216520,8 +217118,12 @@ is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0001871 ! temporal lobe relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/49/WOROI_60_loc.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0002772 @@ -216632,7 +217234,7 @@ xref: DMBA:16423 xref: EV:0100206 xref: FMA:62022 xref: MBA:637 -xref: MESH:D020651 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D020651 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:333 {source="BIRNLEX:1669"} xref: SCTID:279125005 xref: UMLS:C0228333 {source="BIRNLEX:1669"} @@ -217351,8 +217953,14 @@ is_a: UBERON:0001869 ! cerebral hemisphere intersection_of: UBERON:0001869 ! cerebral hemisphere intersection_of: in_left_side_of UBERON:0000955 ! brain relationship: in_left_side_of UBERON:0000955 ! brain -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.0/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.0/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] @@ -217369,8 +217977,14 @@ is_a: UBERON:0001869 ! cerebral hemisphere intersection_of: UBERON:0001869 ! cerebral hemisphere intersection_of: in_right_side_of UBERON:0000955 ! brain relationship: in_right_side_of UBERON:0000955 ! brain -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.0/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.0/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] @@ -218828,7 +219442,7 @@ xref: FMA:74047 xref: HBA:4359 xref: MA:0002923 xref: MBA:536 -xref: MESH:D066274 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D066274 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:243 {source="BIRNLEX:2682"} xref: PBA:10121 xref: UMLS:C0175219 {source="BIRNLEX:2682"} @@ -219195,7 +219809,7 @@ xref: BAMS:Ent xref: BIRNLEX:2709 xref: BTO:0004345 xref: EV:0100179 -xref: MESH:D018728 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D018728 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:2056 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000956 {source="FMA"} ! cerebral cortex @@ -219351,8 +219965,12 @@ intersection_of: part_of UBERON:0002021 ! occipital lobe relationship: part_of UBERON:0002021 {source="BTO"} ! occipital lobe relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e3/Human_brain_lateral_view_description.JPG" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0002903 @@ -219522,8 +220140,12 @@ is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0010262 ! operculum of brain relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b3/Operculum.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0002912 @@ -219948,7 +220570,7 @@ xref: DHBA:12796 xref: FMA:72487 xref: HBA:9197 xref: MBA:841 -xref: MESH:D065833 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D065833 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:594 {source="BIRNLEX:707"} xref: SCTID:369019006 xref: UMLS:C0152379 {source="BIRNLEX:707"} @@ -220250,8 +220872,12 @@ is_a: UBERON:0014640 ! occipital gyrus relationship: part_of UBERON:0002021 {source="FMA"} ! occipital lobe relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a1/Gray727_lingual_gyrus.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0002944 @@ -220362,8 +220988,12 @@ xref: UMLS:C0149547 {source="BIRNLEX:751"} is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0010262 ! operculum of brain relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0002948 @@ -220383,8 +221013,12 @@ xref: UMLS:C0228230 {source="BIRNLEX:758"} is_a: UBERON:0014640 ! occipital gyrus relationship: part_of UBERON:0002021 ! occipital lobe relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0002949 @@ -220791,7 +221425,7 @@ xref: BTO:0003976 xref: DHBA:12156 xref: FMA:62434 xref: HBA:4220 -xref: MESH:D006179 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D006179 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C96217 xref: neuronames:159 {source="BIRNLEX:798"} xref: SCTID:279208003 @@ -221154,8 +221788,12 @@ is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002998 {source="FMA"} ! inferior frontal gyrus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0002981 @@ -221341,8 +221979,8 @@ is_obsolete: true replaced_by: GO:0005883 consider: BIRNLEX:846 consider: FMA:63859 +consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao1316272517 consider: NCIT:C13263 -consider: NIF_Subcellular:sao1316272517 consider: UMLS:C0027834 [Term] @@ -221633,9 +222271,9 @@ replaced_by: GO:0005882 consider: BIRNLEX:879 consider: FMA:63851 consider: GAID:1079 +consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao952483289 consider: MESH:A11.284.195.190.750.410 consider: NCIT:C13248 -consider: NIF_Subcellular:sao952483289 consider: UMLS:C0021770 [Term] @@ -221688,9 +222326,9 @@ is_obsolete: true consider: FMA:63850 consider: GAID:1080 consider: GO:0005884 +consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao2006047981 consider: MESH:A11.284.195.190.750.510 consider: NCIT:C13255 -consider: NIF_Subcellular:sao2006047981 consider: UMLS:C0025979 {source="ncithesaurus:Actin_Filament"} [Term] @@ -222103,8 +222741,12 @@ disjoint_from: UBERON:0010010 {source="NIFSTD"} ! basal nucleus of telencephalon relationship: part_of UBERON:0001893 {source="NIFSTD"} ! telencephalon relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0003021 @@ -222156,7 +222798,7 @@ xref: BIRNLEX:923 xref: DHBA:12416 xref: FMA:71108 xref: HBA:9135 -xref: MESH:D065821 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D065821 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:557 {source="BIRNLEX:923"} xref: SCTID:362401009 xref: UMLS:C0228426 {source="BIRNLEX:923"} @@ -222169,8 +222811,12 @@ relationship: has_part UBERON:0002148 ! locus ceruleus relationship: has_part UBERON:0002149 ! superior salivatory nucleus relationship: part_of UBERON:0000988 ! pons relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/9/9c/Brainstem_Abducens.png" xsd:anyURI property_value: function_notes "involved in the initiation of REM sleep [Wikipedia:Pontine_tegmentum]" xsd:string @@ -222700,7 +223346,7 @@ xref: BAMS:unc xref: BIRNLEX:983 xref: DHBA:10594 xref: FMA:77636 -xref: MESH:D000083382 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D000083382 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:597 {source="BIRNLEX:983"} xref: SCTID:369083001 xref: UMLS:C0228271 {source="BIRNLEX:983"} @@ -222813,7 +223459,7 @@ synonym: "olfactory placodes" EXACT OMO:0003004 [] synonym: "placoda nasalis" EXACT OMO:0003011 [] synonym: "placoda olfactoria" EXACT OMO:0003011 [] xref: AAO:0011076 -xref: BTO:0006222 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006222 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EFO:0003420 xref: EHDAA2:0001232 xref: EHDAA:1504 @@ -222982,7 +223628,7 @@ subset: uberon_slim synonym: "enveloping layer" RELATED [ZFA:0001185] synonym: "epitrichium" RELATED [MP:0013530, PMID:28722897] synonym: "EVL" RELATED OMO:0003000 [ZFA:0001185] -xref: BTO:0003377 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0003377 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EHDAA2:0001846 xref: EHDAA:6538 xref: FMA:295662 @@ -223101,7 +223747,7 @@ synonym: "archinephric duct" RELATED [VHOG:0000082] synonym: "ductus pronephricus" RELATED OMO:0003011 [Wikipedia:Pronephric_duct] synonym: "pronephric ducts" RELATED OMO:0003004 [ZFA:0000150] xref: AAO:0011088 -xref: BTO:0005991 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0005991 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C34279 xref: SCTID:361406002 xref: TAO:0000150 @@ -223421,12 +224067,12 @@ xref: XAO:0000225 xref: ZFA:0000162 is_a: UBERON:0003067 {source="ISBN:0471888893"} ! dorsolateral placode relationship: has_potential_to_developmentally_contribute_to UBERON:0003942 ! somatosensory system +property_value: dc:contributor https://github.com/ANiknejad +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: external_definition "The ectodermal precursor of the trigeminal ganglion. The profundal and the trigeminal ganglia are separate distally but fused at their proximal end as they condense around NF stage 24.[XAO]" xsd:string {ontology="XAO"} property_value: external_definition "The ectodermal rudiment of the trigeminal ganglion, distinguishable during much of the segmentation period. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000162", ontology="TAO", source="ZFIN:curator"} property_value: homology_notes "The dorsolateral placodes (trigeminal and vestibular) develop from ectoderm lateral to the brain (...). In summary, the collective term 'placodes' refers to some rather different structures, probably with different evolutionary origins. Some sensory placodes (at least the otic and olfactory) may have homologues in basal chordates. Even if this is so, it is apparent that they were elaborated considerably during early vertebrate evolution. Epibranchial and dorsolateral placodes appear to be new; we infer that their origin depended on the evolution of specific inductive signals.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000109", ontology="VHOG", source="DOI:10.1073/pnas.97.9.4449 Shimeld SM and Holland PW. Vertebrate innovations. PNAS (2000)", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/ANiknejad -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly property_value: terminology_notes "Consider naming this 'trigeminal placode complex'. Also, Fig9-5 of ISBN:0471888893 calls this the profundus placode; XAO says 'profundal and the trigeminal ganglia are separate distally but fused at their proximal end...'" xsd:string [Term] @@ -223542,7 +224188,7 @@ synonym: "Leydig's duct" RELATED [Wikipedia:Wolffian_duct] synonym: "renal duct" RELATED [] synonym: "Wolffian duct" EXACT [GOC:yaf, Wikipedia:Wolffian_duct, ZFA:0000546] xref: AAO:0000637 -xref: BTO:0005990 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0005990 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EHDAA2:0001243 xref: EHDAA:1590 xref: GAID:1315 @@ -223559,6 +224205,8 @@ is_a: UBERON:0009201 {source="GO"} ! nephric duct relationship: develops_from UBERON:0003060 ! pronephric duct relationship: develops_from UBERON:0005792 {source="EHDAA2"} ! nephric ridge relationship: part_of UBERON:0000080 ! mesonephros +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/rfoulger property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/6d/Gray1109.png" xsd:anyURI property_value: development_notes "In the male the Wolffian duct persists, and forms for example the epididymis, the ductus deferens, the ejaculatory duct, seminal vesicle and efferent ducts." xsd:string property_value: editor_note "Consider adding subclasses for male and female specific variants" xsd:string @@ -223566,8 +224214,6 @@ property_value: editor_note "TODO - mesonephric portion of the nephric duct" xsd property_value: external_definition "Anatomical structure consisting of either of a pair of longitudinal ducts which carry urine and in males, sperm, to the cloaca.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000637", ontology="AAO", source="AAO:BJB"} property_value: external_definition "The first-formed kidney duct, which drains the kidney of most anamniotes and becomes the ductus deferens of male amniotes. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Glossary_G-3, Grande_L, Liem_KF, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000082", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: homology_notes "(...) in all craniates, the archinephric duct develops in embryogeny.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000082", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.686", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/rfoulger [Term] id: UBERON:0003075 @@ -223586,7 +224232,7 @@ xref: EHDAA:346 xref: EHDAA:902 xref: EMAPA:35593 xref: FMA:293879 -xref: MESH:D054258 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D054258 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C34225 xref: neuronames:1362 xref: RETIRED_EHDAA2:0001252 @@ -223968,7 +224614,7 @@ synonym: "sclerotomes" EXACT OMO:0003004 [TAO:0001080] synonym: "sclerotomus" RELATED OMO:0003011 [Wikipedia:Sclerotome] xref: AAO:0010571 xref: AEO:0000212 -xref: BTO:0006255 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006255 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EHDAA2:0003439 xref: EMAPA:31159 xref: FMA:295652 @@ -224238,7 +224884,7 @@ synonym: "female human body" NARROW SENSU [FMA:67812] xref: AAO:0010030 xref: BILA:0000028 xref: CARO:0000028 -xref: FBbt:00007011 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007011 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:67812 xref: HAO:0000028 xref: SCTID:362608006 @@ -224261,7 +224907,7 @@ synonym: "male human body" NARROW SENSU [FMA:67811] xref: AAO:0010033 xref: BILA:0000027 xref: CARO:0000027 -xref: FBbt:00007004 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007004 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:67811 xref: HAO:0000027 xref: SCTID:362609003 @@ -224292,10 +224938,10 @@ xref: XAO:0003028 xref: ZFA:0000292 is_a: UBERON:0000061 ! anatomical structure relationship: adjacent_to UBERON:0013514 ! space surrounding organism +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/wdahdul property_value: editor_note "consider obsoleting. See issue/1305" xsd:string property_value: external_definition "Organism subdivision which is the collection of anatomical structures on the body surface.[ZFA]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000292", ontology="TAO", source="ZFIN:curator"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/wdahdul [Term] id: UBERON:0003103 @@ -224924,7 +225570,7 @@ synonym: "zona pellucida" RELATED [] synonym: "zona pellucida - vitelline membrane" BROAD [VHOG:0000720] xref: AAO:0010332 xref: BTO:0001450 -xref: FBbt:00000042 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000042 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: GAID:1318 xref: MESH:D014817 xref: Wikipedia:Vitelline_membrane @@ -224980,8 +225626,12 @@ relationship: part_of UBERON:0007196 ! tracheobronchial tree relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-trachea.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-trachea.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.0/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/trachea-female/v1.0/assets/3d-vh-f-trachea.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/trachea-male/v1.0/assets/3d-vh-m-trachea.glb" xsd:anyURI property_value: external_definition "An elongated tube which carries air to and from the lungs.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010140", ontology="AAO", source="AAO:BJB"} property_value: external_definition "The respiratory tube between the larynx and the bronchi. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Glossary_G-29, Grande_L, Liem_KF, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000371", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: has_relational_adjective "tracheal" xsd:string @@ -225026,7 +225676,7 @@ xref: EHDAA:6029 xref: FMA:71325 xref: MA:0000316 xref: MAT:0000340 -xref: MESH:D012886 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D012886 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: MIAA:0000340 xref: SCTID:181889008 xref: VHOG:0000334 @@ -225075,7 +225725,7 @@ id: UBERON:0003130 name: arthropod sternum def: "Ventral portion of a segment of an arthropod thorax or abdomen. In insects, the sterna are usually single, large sclerites, and external. However, they can sometimes be divided in two or more, in which case the subunits are called sternites, and may also be modified on the terminal abdominal segments so as to form part of the functional genitalia, in which case they are frequently reduced in size and development, and may become internalized and/or membranous." [Wikipedia:Sternum_(arthropod)] synonym: "sternum" BROAD [] -xref: FBbt:00004557 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004557 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000956 xref: Wikipedia:Sternum_(arthropod) is_a: UBERON:0010000 ! multicellular anatomical structure @@ -225086,7 +225736,7 @@ property_value: editor_note "this term should be ceded to the arthropod anatomy id: UBERON:0003131 name: arthropod tibia def: "A section of the arthropod leg." [Wikipedia:Arthropod_leg] -xref: FBbt:00004642 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004642 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0001017 xref: TADS:0000281 xref: Wikipedia:Arthropod_leg @@ -225233,7 +225883,7 @@ id: UBERON:0003142 name: prepupa def: "An organism at the prepupal stage. The prepupal stage is a life stage interposed between the larval and the pupal stages in insects that undergo a complete metamorphosis. The start of the pre-pupal stage is marked by pupariation, and the end is marked by pupation." [GO:0035210] xref: BTO:0001110 -xref: FBbt:00002952 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00002952 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000812 is_a: UBERON:0000468 ! multicellular organism relationship: develops_from UBERON:0002548 ! larva @@ -225251,9 +225901,9 @@ synonym: "chrysalis" NARROW [NCBITaxon:37572, Wikipedia:Pupa] synonym: "pupae" RELATED OMO:0003004 [] xref: BTO:0001143 xref: EFO:0002684 -xref: FBbt:00002953 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00002953 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000886 -xref: MESH:D011679 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D011679 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: Wikipedia:Pupa is_a: UBERON:0000468 ! multicellular organism intersection_of: UBERON:0000468 ! multicellular organism @@ -225262,12 +225912,12 @@ relationship: existence_starts_and_ends_during UBERON:0000070 ! pupal stage relationship: has_quality PATO:0001187 ! pupal relationship: immediate_transformation_of UBERON:0003142 {gci_relation="part_of", gci_filler="NCBITaxon:7227"} ! prepupa relationship: only_in_taxon NCBITaxon:33392 ! Endopterygota +property_value: dc:contributor https://github.com/ANiknejad +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/dosumis +property_value: dc:contributor https://github.com/fbastian +property_value: dc:contributor https://github.com/mmc46 property_value: has_relational_adjective "pupal" xsd:string -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/ANiknejad -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/dosumis -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/fbastian -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mmc46 [Term] id: UBERON:0003144 @@ -225355,7 +226005,7 @@ def: "The fused, compact cephalic plates that comprise the head, excluding the e subset: efo_slim xref: BTO:0004711 xref: EFO:0001927 -xref: FBbt:00004482 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004482 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000398 is_a: UBERON:6007284 ! insect region of integument relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda @@ -225375,7 +226025,7 @@ id: UBERON:0003155 name: arthropod occiput comment: arthropod specific groupings belong in separate ontology, but this is retained for disambiguation purposes synonym: "occiput" RELATED SENSU [FBbt:00004492] -xref: FBbt:00004492 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004492 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000658 xref: TGMA:0000041 is_a: UBERON:0006056 ! posterior surface of head @@ -225430,7 +226080,7 @@ synonym: "dorsal ocelli" RELATED OMO:0003004 [] synonym: "ocelli" RELATED OMO:0003004 [] synonym: "ocellus" EXACT [] xref: BTO:0001758 -xref: FBbt:00004505 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004505 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000661 xref: Wikipedia:Ocellus#Ocelli is_a: UBERON:0000963 ! head sensillum @@ -225440,7 +226090,7 @@ relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda id: UBERON:0003162 name: lateral ocellus def: "The ocellus that is paired[HAO]. The number, form, and function of the dorsal ocelli varies markedly throughout insect orders. They tend to be larger and more strongly expressed in flying insects (particularly bees, wasps, dragonflies and locusts), where they are typically found as a triplet. Two lateral ocelli are directed to the left and right of the head respectively, while a central (median) ocellus is directed frontally. In some terrestrial insects (e.g. some ants and cockroaches), only two lateral ocelli are present: the median ocellus is absent. Note that the unfortunately labelled 'lateral ocelli' here refers to the sideways facing position of the ocelli, which are of the dorsal type. They should not be confused with the lateral ocelli of some insect larvae (see stemmata)[Wikipedia]." [HAO:0000481, Wikipedia:Ocellus#Ocelli] -xref: FBbt:00004506 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004506 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000481 xref: Wikipedia:Ocellus#Ocelli is_a: UBERON:0003161 ! dorsal ocellus @@ -225701,7 +226351,7 @@ consider: HAO:0000157 [Term] id: UBERON:0003194 name: imaginal disc-derived wing vein -xref: FBbt:00004751 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004751 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0001095 is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0000984 ! imaginal disc-derived wing @@ -225745,7 +226395,7 @@ name: egg chamber def: "A follicle of the insect ovary. It is formed by germ cells (one oocyte and several nurse cells) encapsulated in follicle cells (Armstrong et al., 2020)." [DOI:10.1530/REP-18-0593] synonym: "follicle" RELATED [FBbt:00004894] synonym: "germarium derived egg chamber" EXACT [FBbt:00004894] -xref: FBbt:00004894 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004894 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: NCIT:C61362 xref: UMLS:C1571705 {source="ncithesaurus:Follicle"} is_a: UBERON:8450001 ! egg follicle @@ -225763,7 +226413,7 @@ id: UBERON:0003201 name: exocuticle def: "The outer layer of the procuticle of certain crustaceans and arthropods, which contains cuticulin, chitin, and phenolic substances that are oxidized to produce the dark pigment of the cuticle;nThe hard and usually darkened layer of the cuticle lying between the endocuticle and epicuticle." [BTO:0001602] xref: BTO:0001602 -xref: FBbt:00004973 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004973 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000311 is_a: UBERON:0000476 ! acellular anatomical structure relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda @@ -225773,7 +226423,7 @@ id: UBERON:0003202 name: endocuticle def: "The inner layer of the procuticle in certain crustaceans and arthropods, which is almost entirely composed of protein and chitin." [BTO:0001603] xref: BTO:0001603 -xref: FBbt:00004974 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004974 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000290 is_a: UBERON:0000476 ! acellular anatomical structure relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda @@ -225825,7 +226475,7 @@ id: UBERON:0003209 name: blood nerve barrier def: "Barrier between the perineurium of peripheral nerves and the vascular endothelium of endoneurial capillaries. The perineurium acts as a diffusion barrier, but ion permeability at the blood-nerve barrier is still higher than at the blood-brain barrier[GO]." [GO:0008065, Wikipedia:Blood-nerve_barrier] synonym: "blood-nerve barrier" EXACT [] -xref: MESH:D049428 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D049428 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: Wikipedia:Blood-nerve_barrier is_a: UBERON:0000119 ! cell layer relationship: adjacent_to UBERON:0000179 ! haemolymphatic fluid @@ -225854,7 +226504,7 @@ def: "A median eye is an eye that is connected to a paired or unpaired median an synonym: "frontal ocellus" RELATED [PMID:21062451] synonym: "medial ocellus" EXACT [FBbt:00004507] synonym: "median ocellus" EXACT [HAO:0000526] -xref: FBbt:00004507 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004507 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000526 xref: Wikipedia:Ocellus#Ocelli is_a: UBERON:0000970 ! eye @@ -225871,7 +226521,7 @@ synonym: "organ of gustatory system" EXACT [OBOL:automatic] synonym: "organ of taste system" EXACT [OBOL:automatic] synonym: "taste organ" EXACT [] synonym: "taste system organ" EXACT [OBOL:automatic] -xref: FBbt:00005159 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005159 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:77853 is_a: UBERON:0000005 ! chemosensory organ intersection_of: UBERON:0000062 ! organ @@ -229078,8 +229728,13 @@ intersection_of: UBERON:0002183 ! lobar bronchus intersection_of: part_of UBERON:0002167 ! right lung relationship: part_of UBERON:0002167 ! right lung relationship: part_of UBERON:0006518 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! right lung lobe -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb" xsd:anyURI [Term] id: UBERON:0003405 @@ -229098,8 +229753,13 @@ intersection_of: UBERON:0002183 ! lobar bronchus intersection_of: part_of UBERON:0002168 ! left lung relationship: part_of UBERON:0002168 ! left lung relationship: part_of UBERON:0008951 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! left lung lobe -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb" xsd:anyURI [Term] id: UBERON:0003406 @@ -229114,6 +229774,7 @@ is_a: UBERON:0007844 ! cartilage element intersection_of: UBERON:0007844 ! cartilage element intersection_of: part_of UBERON:0001004 ! respiratory system relationship: part_of UBERON:0001004 ! respiratory system +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.0/assets/VH_F_Lung.glb" xsd:anyURI [Term] id: UBERON:0003407 @@ -230050,7 +230711,7 @@ synonym: "bone of upper extremity" RELATED [GAID:178] synonym: "bone organ of arm" EXACT [OBOL:automatic] xref: EMAPA:37303 {source="MA:th"} xref: MA:0000592 -xref: MESH:D050280 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D050280 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0008962 ! forelimb bone intersection_of: UBERON:0001474 ! bone element intersection_of: part_of UBERON:0001460 ! arm @@ -230088,7 +230749,7 @@ xref: EMAPA:19019 xref: EMAPA:35924 xref: MA:0001482 xref: MA:0003159 -xref: MESH:D005147 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D005147 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C63706 xref: SCTID:181799005 xref: UMLS:C0015455 {source="ncithesaurus:Facial_Bone"} @@ -232734,8 +233395,8 @@ relationship: develops_from UBERON:0007267 ! trachea pre-cartilage rings relationship: part_of UBERON:0003126 ! trachea relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/56/Gray952.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-trachea.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-trachea.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/trachea-female/v1.0/assets/3d-vh-f-trachea.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/trachea-male/v1.0/assets/3d-vh-m-trachea.glb" xsd:anyURI property_value: editor_note "check whether to classify as part of splanchoncranium" xsd:string property_value: taxon_notes "in mammals the rings are incomplete, in avians the rings are complete." xsd:string @@ -234721,7 +235382,7 @@ synonym: "floor of mouth" EXACT [FMA:86592] synonym: "floor of oval cavity" EXACT [] synonym: "floor of the oval cavity" EXACT [] synonym: "sublingual region" NARROW [GAID:1283] -xref: BTO:0006184 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006184 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: CALOHA:TS-2207 xref: EFO:0001923 xref: EMAPA:37911 {source="MA:th"} @@ -234906,7 +235567,7 @@ comment: Design pattern notes: check whether this fits the foramen design patter subset: pheno_slim subset: vertebrate_core xref: AAO:0010826 -xref: BTO:0006035 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006035 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EMAPA:37868 {source="MA:th"} xref: FMA:75306 xref: GAID:228 @@ -235000,8 +235661,12 @@ relationship: derived_from_ancestral_fusion_of UBERON:0001094 ! sacral vertebra relationship: part_of UBERON:0001270 {source="FMA"} ! bony pelvis relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/ec/Gray95.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.0/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.1/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.2/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.0/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.1/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.2/assets/VH_M_Pelvis.glb" xsd:anyURI property_value: external_ontology_notes "the AAO class 'sacrum' is deliberately placed under 'sacral vertebra' rather than here" xsd:string {external_ontology="AAO"} property_value: has_relational_adjective "sacral" xsd:string @@ -235598,8 +236263,12 @@ relationship: part_of RO:0002577 ! system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/5b/Gray1189.png" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e4/Bilebladder.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI [Term] id: UBERON:0003714 @@ -235632,6 +236301,7 @@ property_value: external_ontology_notes "FMA definition includes vasculature" xs id: UBERON:0003715 name: splanchnic nerve def: "The major nerves supplying sympathetic innervation to the abdomen, including the greater, lesser, and lowest (or smallest) splanchnic nerves that are formed by preganglionic fibers from the spinal cord which pass through the paravertebral ganglia and then to the celiac ganglia and plexuses and the lumbar splanchnic nerves carry fibers which pass through the lumbar paravertebral ganglia to the mesenteric and hypogastric ganglia." [MP:0008318] +subset: human_reference_atlas subset: pheno_slim synonym: "splanchnic nerves" RELATED [BAMS:spn] synonym: "visceral nerve" RELATED [Wikipedia:Splanchnic_nerves] @@ -235648,12 +236318,14 @@ intersection_of: innervates UBERON:0000916 ! abdomen relationship: contributes_to_morphology_of UBERON:0000013 ! sympathetic nervous system relationship: innervates UBERON:0000916 ! abdomen relationship: part_of UBERON:0000013 ! sympathetic nervous system +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: structure_notes "All carry sympathetic fibers except for the pelvic splanchnic nerves, which carry parasympathetic fibers" xsd:string [Term] id: UBERON:0003716 name: recurrent laryngeal nerve def: "A branch of the vagus nerve that supplies motor function and sensation to the larynx (voice box). It travels within the endoneurium. It is the nerve of the 6th Branchial Arch." [Wikipedia:Recurrent_laryngeal_nerve] +subset: human_reference_atlas synonym: "inferior laryngeal nerve" RELATED [GAID:804] synonym: "nervus laryngeus recurrens" EXACT OMO:0003011 [Wikipedia:Recurrent_laryngeal_nerve] synonym: "ramus recurrens" RELATED [AAO:0010754] @@ -235674,6 +236346,7 @@ relationship: develops_from UBERON:0003117 {source="Wikipedia"} ! pharyngeal arc relationship: innervates UBERON:0001737 ! larynx relationship: only_in_taxon NCBITaxon:32523 ! Tetrapoda relationship: part_of UBERON:0001759 ! vagus nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: external_definition "Branch of the vagus nerve that separates from the vagus well postcranially, then continues anteriorly to innervate the larynx[AAO:0010754]." xsd:string {source="AAO:0010754"} [Term] @@ -235753,6 +236426,7 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/81/Gr id: UBERON:0003721 name: lingual nerve def: "The lingual nerve is a branch of the mandibular nerve (CN V3), itself a branch of the trigeminal nerve, which supplies sensory innervation to the tongue. It also carries fibers from the facial nerve, which return taste information from the anterior two thirds of the tongue." [Wikipedia:Lingual_nerve] +subset: human_reference_atlas synonym: "lingual branch of trigeminal nerve" EXACT [] synonym: "trigeminal nerve lingual branch" EXACT [] synonym: "trigeminal V nerve lingual branch" EXACT [MA:0001102] @@ -235770,6 +236444,7 @@ intersection_of: innervates UBERON:0001723 ! tongue relationship: branching_part_of UBERON:0000375 ! mandibular nerve relationship: innervates UBERON:0001723 ! tongue relationship: part_of UBERON:0000375 ! mandibular nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0003722 @@ -235875,6 +236550,7 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/20/Gr id: UBERON:0003726 name: thoracic nerve def: "The twelve spinal nerves on each side of the thorax. They include eleven INTERCOSTAL NERVES and one subcostal nerve. Both sensory and motor, they supply the muscles and skin of the thoracic and abdominal walls." [MESH:A08.800.800.720.800] +subset: human_reference_atlas synonym: "nervi thoracici" RELATED OMO:0003011 [Wikipedia:Thoracic_nerves] synonym: "nervus thoracis" EXACT OMO:0003011 [FMA:5860, FMA:TA] synonym: "pectoral nerve" RELATED [GAID:857] @@ -235889,6 +236565,7 @@ is_a: UBERON:0001780 ! spinal nerve intersection_of: UBERON:0001780 ! spinal nerve intersection_of: extends_fibers_into UBERON:0003038 ! thoracic spinal cord relationship: extends_fibers_into UBERON:0003038 ! thoracic spinal cord +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0003727 @@ -236095,7 +236772,7 @@ xref: NCIT:C32974 xref: SCTID:244015008 xref: UMLS:C1140621 {source="ncithesaurus:Leg"} xref: VHOG:0000348 -xref: VO:0010971 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: VO:0010971 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: VSAO:0005060 xref: Wikipedia:Forearm is_a: UBERON:0002471 ! zeugopod @@ -237141,7 +237818,7 @@ xref: FMA:74042 xref: HBA:12892 xref: MA:0000950 xref: MBA:382 -xref: MESH:D056547 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D056547 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32246 xref: neuronames:183 {source="BIRNLEX:1197"} xref: PBA:10058 @@ -237186,7 +237863,7 @@ xref: FMA:74044 xref: HBA:12893 xref: MA:0000951 xref: MBA:423 -xref: MESH:D056651 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D056651 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32247 xref: neuronames:184 {source="BIRNLEX:1362"} xref: PBA:10063 @@ -237235,7 +237912,7 @@ xref: FMA:74045 xref: HBA:12894 xref: MA:0000952 xref: MBA:463 -xref: MESH:D056654 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D056654 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32248 xref: neuronames:185 {source="BIRNLEX:1204"} xref: PBA:10068 @@ -237798,7 +238475,7 @@ synonym: "choroid plexus epithelial tissue" EXACT [OBOL:automatic] synonym: "epithelial tissue of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "epithelial tissue of choroid plexus" EXACT [OBOL:automatic] synonym: "epithelium of choroid plexus" EXACT [FMA:242811] -xref: BTO:0006008 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006008 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EMAPA:36608 xref: FMA:242811 xref: MA:0000824 @@ -237838,7 +238515,7 @@ def: "Epithelial tubes transport gases, liquids and cells from one site to anoth synonym: "epithelial or endothelial tube" EXACT [] xref: AEO:0000114 xref: EHDAA2:0003114 -xref: FBbt:00007474 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007474 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000025 ! tube is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium @@ -237880,7 +238557,7 @@ synonym: "fat body" EXACT SENSU [FBbt:00005066] synonym: "fat body sensu invertebrata" RELATED [EFO:0000810] xref: BTO:0000442 xref: EFO:0000810 -xref: FBbt:00005066 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005066 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: GAID:1213 xref: MESH:D005216 xref: MIAA:0000096 @@ -238118,7 +238795,7 @@ synonym: "gut epithelium" EXACT [EHDAA2:0004567, MA:0003201, ZFA:0005123] xref: BTO:0000956 xref: EHDAA2:0004567 xref: EMAPA:32928 -xref: FBbt:00047166 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00047166 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MA:0003201 xref: NCIT:C12963 xref: TAO:0005123 @@ -238256,7 +238933,7 @@ synonym: "gland of reproductive system" EXACT [OBOL:automatic] synonym: "reproductive gland" EXACT [MA:0001751] synonym: "reproductive system gland" EXACT [OBOL:automatic] synonym: "sex gland" EXACT [MP:0000653] -xref: BTO:0006162 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006162 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MA:0001751 is_a: UBERON:0002530 ! gland is_a: UBERON:0005156 ! reproductive structure @@ -238574,9 +239251,9 @@ relationship: has_part GO:0005604 ! basement membrane relationship: has_part GO:0071953 ! elastic fiber relationship: part_of UBERON:0001776 {source="FMA", source="ZFA"} ! optic choroid relationship: part_of UBERON:0013399 ! blood vessel layer of choroid +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/gkoutos property_value: development_notes "Bruch's membrane is present by midterm in fetal development as an elastic sheet." xsd:string -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/gkoutos property_value: seeAlso "https://github.com/obophenotype/uberon/issues/14" xsd:anyURI property_value: structure_notes "Bruch's membrane consists of five layers (from inside to outside): 1. the basement membrane of the retinal pigment epithelium; 2. the inner collagenous zone; 3. a central band of elastic fibers; 4. the outer collagenous zone; 5. the basement membrane of the choriocapillaris. The retinal pigment epithelium transports metabolic waste from the photoreceptors across Bruch's membrane to the choroid[WP]" xsd:string @@ -238779,8 +239456,8 @@ def: "The lymph nodes located outside the thoracic and abdominal cavities, such subset: pheno_slim xref: EMAPA:37938 {source="MA:th"} is_a: UBERON:0000029 ! lymph node -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0003970 @@ -238922,8 +239599,12 @@ xref: FMA:67611 xref: galen:Valve is_a: UBERON:0000064 ! organ part relationship: capable_of GO:0065008 ! regulation of biological quality -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb" xsd:anyURI property_value: has_relational_adjective "valvular" xsd:string [Term] @@ -239602,7 +240283,7 @@ synonym: "epimere mesoderm" RELATED [] synonym: "mesenchyma dermatomiale" RELATED OMO:0003011 [Wikipedia:Dermatomal_mesenchyme] xref: AAO:0011028 xref: AEO:0001017 -xref: BTO:0006248 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006248 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EHDAA2_RETIRED:0003428 xref: EHDAA:1719 xref: EHDAA:1725 @@ -239787,7 +240468,7 @@ relationship: contributes_to_morphology_of UBERON:0003124 ! chorion membrane relationship: part_of UBERON:0003124 ! chorion membrane relationship: part_of UBERON:8600038 ! placental disc relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Placenta.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/placenta-full-term-female/v1.0/assets/VH_F_Placenta.glb" xsd:anyURI [Term] id: UBERON:0004029 @@ -239885,7 +240566,7 @@ xref: EMAPA:32703 xref: https://upload.wikimedia.org/wikipedia/commons/thumb/a/ac/Corticogenesis_in_a_wild-type_mouse_with_captions_in_english_copy.png/360px-Corticogenesis_in_a_wild-type_mouse_with_captions_in_english_copy.png xref: neuronames:3233 xref: PBA:294021932 -xref: VO:0011276 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: VO:0011276 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: Wikipedia:Subplate is_a: UBERON:0014950 ! layer of developing cerebral cortex intersection_of: UBERON:0014950 ! layer of developing cerebral cortex @@ -240826,9 +241507,9 @@ is_a: UBERON:0003947 ! brain ventricle/choroid plexus is_a: UBERON:0005358 ! ventricle of nervous system relationship: part_of UBERON:0005282 ! ventricular system of brain relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +property_value: dc:contributor https://github.com/cmungall property_value: external_definition "Organ cavity of the brain which consists of the lateral ventricles, the third and fourth ventricles and the cerebral aqueduct[BIRNLEX:1356]." xsd:string {source="BIRNLEX:1356"} property_value: external_ontology_notes "FMA draws the distinction between e.g. 'fourth ventricle' and 'cavity of fourth ventricle'. The latter is a cavity, and part of the former, which is a region. The superclass of 'fourth ventricle' is_a 'region of ventricular system of the brain'. We place this class here, although it is not equivalent to ventricles, as it includes ventricle bodies." xsd:string {external_ontology="FMA"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall [Term] id: UBERON:0004087 @@ -240852,8 +241533,12 @@ is_a: UBERON:0003479 ! thoracic cavity vein is_a: UBERON:0013768 ! great vessel of heart relationship: located_in UBERON:0002224 ! thoracic cavity property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/35/Relations_of_the_aorta,_trachea,_esophagus_and_other_heart_structures.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/7/7c/Heart_numlabels.png" xsd:anyURI [Term] @@ -241775,8 +242460,12 @@ intersection_of: part_of UBERON:0000948 ! heart relationship: drains UBERON:0002349 ! myocardium relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0000948 ! heart -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI [Term] id: UBERON:0004149 @@ -242500,7 +243189,7 @@ subset: pheno_slim synonym: "SSB" EXACT OMO:0003000 [] synonym: "stage II nephron" EXACT [http://www.gudmap.org/Organ_Summaries/Metanephros/Renal_vesicle.html] xref: EMAPA:27756 -xref: VO:0010896 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: VO:0010896 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: ZFA:0005589 is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0004198 {source="GO"} ! comma-shaped body @@ -242541,10 +243230,18 @@ relationship: contributes_to_morphology_of UBERON:0000362 ! renal medulla relationship: fma_set_term FMA:74268 relationship: part_of UBERON:0000362 ! renal medulla relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.2/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.2/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png" xsd:anyURI property_value: external_ontology_notes "not the same as FMA:50609 Pyramid (which is a volume / dimensional entity)" xsd:string {external_ontology="FMA"} @@ -243132,8 +243829,10 @@ is_a: UBERON:0004228 ! urinary bladder smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0001258 ! neck of urinary bladder relationship: part_of UBERON:0001258 ! neck of urinary bladder -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Urinary_Bladder.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Urinary_Bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.0/assets/VH_F_Urinary_Bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.1/assets/VH_F_Urinary_Bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.0/assets/VH_M_Urinary_Bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.1/assets/VH_M_Urinary_Bladder.glb" xsd:anyURI [Term] id: UBERON:0004231 @@ -244261,6 +244960,7 @@ property_value: function_notes "It is not a true skeleton, but it does provide s id: UBERON:0004293 name: parasympathetic nerve def: "A nerve that is part of a parasympathetic nervous system [Automatically generated definition]." [OBOL:automatic] +subset: human_reference_atlas synonym: "nerve of parasympathetic nervous system" EXACT [OBOL:automatic] xref: EHDAA2:0001401 xref: EMAPA:17271 @@ -244275,6 +244975,7 @@ relationship: has_developmental_contribution_from UBERON:0005428 {source="NCBIBo relationship: has_developmental_contribution_from UBERON:0010075 {source="NCBIBook:NBK10065"} ! sacral neural crest relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0000011 ! parasympathetic nervous system +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0004294 @@ -244356,9 +245057,9 @@ intersection_of: UBERON:0003221 ! phalanx intersection_of: proximally_connected_to UBERON:0004301 ! middle phalanx relationship: part_of UBERON:0009551 ! distal segment of digit relationship: proximally_connected_to UBERON:0004301 ! middle phalanx +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/ab/Scheme_human_hand_bones-en.svg" xsd:anyURI -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly property_value: taxon_notes "In human anatomy, the distal phalanges of the four fingers and toes articulate proximally with the intermediate phalanges at the distal interphalangeal joints (DIP); in the thumb and big toe, with only two phalanges, the distal phalanges articulate proximally with the proximal phalanges. The distal phalanges carry and shape nails and claws and are therefore occasionally referred to as the ungual phalanges. The distal phalanges are cone-shaped in most mammals, including most primates, but relatively wide and flat in humans." xsd:string [Term] @@ -245357,7 +246058,7 @@ xref: EHDAA2:0001525 xref: EHDAA:185 xref: EMAPA:16072 xref: FMA:293110 -xref: MESH:D054240 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D054240 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C28402 xref: SCTID:361438007 xref: UMLS:C0033153 {source="ncithesaurus:Primitive_Streak"} @@ -245836,9 +246537,9 @@ relationship: adjacent_to UBERON:0001985 ! corneal endothelium relationship: has_quality PATO:0000964 ! transparent relationship: part_of UBERON:0000964 ! cornea relationship: produced_by UBERON:0001985 {source="Cline et al"} ! corneal endothelium +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/gkoutos property_value: external_definition "Acellular anatomical structure composed of collagen, Descemet's membrane is secreted as a basement membrane of the corneal endothelium. Located between the stroma and the corneal endothelium, it is approximately 0.15 micrometer thick at 6 months post-fertilization.[ZFIN]" xsd:string {date_retrieved="2016-05-01", external_class="TAO:0002157", ontology="ZFIN", source="ZFIN:ZDB-PUB-061010-3", source="https://orcid.org/0000-0001-9114-8737"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/gkoutos property_value: seeAlso "https://github.com/obophenotype/uberon/issues/15" xsd:anyURI [Term] @@ -247269,7 +247970,7 @@ replaced_by: UBERON:0000042 id: UBERON:0004458 name: obsolete body cavity or lining def: "Either a cavity lining or the space it encloses." [https://github.com/obophenotype/uberon/issues/12] -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/cmungall is_obsolete: true replaced_by: UBERON:0005906 @@ -248229,12 +248930,12 @@ relationship: part_of UBERON:0000062 ! organ relationship: present_in_taxon NCBITaxon:33090 ! Viridiplantae relationship: present_in_taxon NCBITaxon:33208 ! Metazoa relationship: present_in_taxon NCBITaxon:4751 ! Fungi +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/wdahdul property_value: editor_note "should be declared disjoint from organ, but in some ontologies (e.g. ZFA), structures such as neural spines are classified as bones (and hence organs)" xsd:string property_value: external_definition "Anatomical structure that is a natural outgrowth, projection, or appendage. A process can be part of a bone, cartilage, or tissue.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010278", ontology="AAO", source="AAO:BJB"} property_value: external_definition "Anatomical structure that is a natural outgrowth, projection, or appendage. A process can be part of a bone, cartilage, tissue, fin, scale, etc.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001834", ontology="TAO", source="TAO:wd"} property_value: external_definition "Anatomical structure that is a natural outgrowth, projection, or appendage. A process can be part of a bone, cartilage, tissue, fin, scale, etc.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000180", ontology="VSAO", source="TAO:curator"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/wdahdul [Term] id: UBERON:0004530 @@ -248367,8 +249068,8 @@ intersection_of: has_part UBERON:0002391 ! lymph relationship: has_part UBERON:0002391 ! lymph relationship: part_of UBERON:0006558 ! lymphatic part of lymphoid system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.2/assets/NIH_F_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.2/assets/NIH_M_Lymph_Node.glb" xsd:anyURI property_value: editor_note "consider merging with parent" xsd:string property_value: external_definition "A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. Lymphatic vessels are usually classified as either superficial or deep.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005105", ontology="TAO", source="ZFIN:curator"} @@ -248390,8 +249091,9 @@ intersection_of: composed_primarily_of UBERON:0001981 ! blood vessel relationship: composed_primarily_of UBERON:0001981 ! blood vessel relationship: part_of UBERON:0004535 ! cardiovascular system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI [Term] id: UBERON:0004538 @@ -248408,9 +249110,12 @@ is_a: UBERON:0002113 ! kidney intersection_of: UBERON:0002113 ! kidney intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism relationship: in_left_side_of UBERON:0000468 ! multicellular organism -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Kidney_Left.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.2/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb" xsd:anyURI property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] @@ -248428,9 +249133,12 @@ is_a: UBERON:0002113 ! kidney intersection_of: UBERON:0002113 ! kidney intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism relationship: in_right_side_of UBERON:0000468 ! multicellular organism -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Kidney_Right.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.2/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb" xsd:anyURI property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] @@ -248551,8 +249259,12 @@ is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0000970 ! eye intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism relationship: in_left_side_of UBERON:0000468 ! multicellular organism -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-l.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.0/assets/VH_F_Eye_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.1/assets/VH_F_Eye_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.2/assets/3d-vh-f-eye-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.0/assets/VH_M_Eye_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.1/assets/VH_M_Eye_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.2/assets/3d-vh-m-eye-l.glb" xsd:anyURI property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] @@ -248573,8 +249285,10 @@ is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0000970 ! eye intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism relationship: in_right_side_of UBERON:0000468 ! multicellular organism -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-r.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.1/assets/VH_F_Eye_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.2/assets/3d-vh-f-eye-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.1/assets/VH_M_Eye_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.2/assets/3d-vh-m-eye-r.glb" xsd:anyURI property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] @@ -248603,7 +249317,7 @@ xref: EMAPA:18267 xref: FMA:14915 xref: galen:LowerEsophagealSphincter xref: MA:0002951 -xref: MESH:D049630 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D049630 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C33009 xref: SCTID:267809009 xref: UMLS:C0227192 {source="ncithesaurus:Lower_Esophageal_Sphincter"} @@ -249596,7 +250310,7 @@ synonym: "otic region" RELATED [] synonym: "periotic" RELATED [] synonym: "periotic capsule" RELATED [VHOG:0000854] xref: AAO:0010143 -xref: BTO:0005981 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0005981 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EMAPA:17596 xref: SCTID:361515007 xref: VHOG:0000854 @@ -250298,8 +251012,12 @@ xref: Wikipedia:Straight_gyrus is_a: UBERON:0000200 {source="FMA"} ! gyrus relationship: part_of UBERON:0016525 {source="FMA"} ! frontal lobe relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0004672 @@ -250345,6 +251063,7 @@ xref: BIRNLEX:1346 xref: DHBA:12865 xref: DMBA:17739 xref: FMA:52610 +xref: HBA:9322 xref: SCTID:280185007 xref: TAO:0000192 xref: ZFA:0000192 @@ -250404,6 +251123,7 @@ xref: BIRNLEX:1588 xref: DHBA:12886 xref: DMBA:17750 xref: FMA:72632 +xref: HBA:9343 xref: neuronames:798 xref: UMLS:C0175555 is_a: UBERON:0006843 {source="FMA"} ! root of cranial nerve @@ -250429,7 +251149,7 @@ synonym: "spinal cord lateral horn" EXACT [BIRNLEX:2666] xref: BIRNLEX:2666 xref: FMA:256536 xref: MA:0001118 -xref: MESH:D066152 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D066152 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32938 xref: UMLS:C0228567 {source="BIRNLEX:2666"} xref: UMLS:C0228582 {source="ncithesaurus:Lateral_Horn_of_the_Spinal_Cord"} @@ -251347,7 +252067,7 @@ xref: FMA:76928 xref: HBA:4698 xref: MA:0000202 xref: MBA:645 -xref: MESH:D065814 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D065814 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C33866 xref: neuronames:2463 xref: SCTID:279105006 @@ -251363,8 +252083,12 @@ relationship: mutually_spatially_disjoint_with UBERON:0002245 ! cerebellar hemis relationship: part_of UBERON:0002129 {source="ABA"} ! cerebellar cortex relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/43/CerebellumDiv.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI property_value: external_ontology_notes "we follow MBA and NIFSTD in making this part of the cerebellar cortex, but FMA may handle this differently" xsd:string {external_ontology="NIF"} property_value: taxon_notes "In bony fish, or teleosts, it has been proposed that the cerebellar auricles, which receive a large amount of input from the vestibulolateral line system, constitute the vestibulocerebellum and are homologues of the flocculonodular lobe of higher vertebrates along with the corpus cerebelli, which receives spinocerebellar and tectocerebellar fibers. The labyrinth and the lateral line organs of lampreys have structural and functional similarity. An important difference between the two structures is that the arrangement of the lateral line organs are such that they are sensitive to relative motion of the fluid surrounding the animal, whereas the labyrinths, having very similar sensing mechanisms, are sensitive to endolymph, providing information concerning the animal's own equilibrium of the body and orientation in space" xsd:string {source="WP"} @@ -251489,8 +252213,14 @@ relationship: only_in_taxon NCBITaxon:32523 {source="Wikipedia"} ! Tetrapoda relationship: part_of UBERON:0002894 ! olfactory cortex relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b1/Human_brainstem_anterior_view_2_description.JPG" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.0/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.0/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI property_value: taxon_notes "Piriform cortical regions are present in the brains of amphibians, reptiles and mammals. The piriform cortex is among three areas that emerge in the telencephalon of amphibians, situated caudally to a dorsal area, which is caudal to a hippocampal area. Farther along the phylogenic timeline, the telencephalic bulb of reptiles as viewed in a cross section of the transverse plane extends with the archipallial hippocampus folding toward the midline and down as the dorsal area begins to form a recognizable cortex. As mammalian cerebrums developed, volume of the dorsal cortex increased in slightly greater proportion, as compared proportionally with increased overall brain volume, until it enveloped the hippocampal regions. Recognized as neopallium or neocortex, enlarged dorsal areas envelop the paleopallial piriform cortex in humans and Old World monkeys. Among taxonomic groupings of mammals, the piriform cortex and the olfactory bulb become proportionally smaller in the brains of phylogenically younger species. The piriform cortex occupies a greater proportion of the overall brain and of the telencephalic brains of insectivores than in primates. The piriform cortex continues to occupy a consistent albeit small and declining proportion of the increasingly large telencephalon in the most recent primate species while the volume of the olfactory bulb becomes less in proportion" xsd:string {source="WP"} [Term] @@ -251669,7 +252399,7 @@ synonym: "trilaminar disk" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "trilaminar germ" RELATED [https://orcid.org/0000-0002-6601-2165] xref: BILA:0000060 xref: BTO:0001403 -xref: FBbt:00005317 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005317 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:293108 xref: GAID:1302 xref: MESH:D005775 @@ -251907,14 +252637,14 @@ relationship: overlaps UBERON:0003113 {source="ZFA-modifed", source="cjm"} ! der relationship: part_of UBERON:0003278 {source="AAO"} ! skeleton of lower jaw property_value: axiom_lost_from_external_ontology "relationship loss: develops_from articular bone (TAO:0001805)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000467", ontology="TAO"} property_value: axiom_lost_from_external_ontology "relationship loss: overlaps dentary-anguloarticular joint (TAO:0001749)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000467", ontology="TAO"} +property_value: dc:contributor https://github.com/alex-dececchi +property_value: dc:contributor https://github.com/cmungall property_value: editor_note "TODO - resolve part_of relationships" xsd:string property_value: external_comment "The presence of an anguloarticular is interpreted as a synapomorphy of the Clupeocephala (Patterson and Rosen, 1977; Arratia, 1999).[TAO]" xsd:string {date_retrieved="2012-09-06", external_class="TAO:0000467", ontology="TAO", source="Curator"} property_value: external_definition "Dermal and endochondral compound bone that results from the fusion of the dermal angular and the endochondral articular and forms the posterior part of the lower jaw. It articulates with the dentary anteriorly and with the retroarticular postero-medially. The anguloarticular is paired.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000467", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Endochondral ossification of the posterior articular part of Meckel's cartilage.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000028", ontology="AAO", source="AAO:LAP"} property_value: external_ontology_notes "TAO has a distinct class for articular - in fact we need (at least) 3 classes here - articular, anguloarticular and malleus, arranged into a single VHOG group" xsd:string {external_ontology="TAO"} property_value: homology_notes "According to this theory (Reichert-Gaupp theory), the mammalian stapes is derived from the reptilian columella, the incus from the quadrate and the malleus from the articular (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000690", ontology="VHOG", source="DOI:10.1017/S0022215100009087 Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/alex-dececchi -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: seeAlso "https://github.com/obophenotype/uberon/issues/98" xsd:anyURI [Term] @@ -252021,7 +252751,7 @@ synonym: "germinal disc" EXACT [Wikipedia:Germinal_disc] xref: AAO:0000043 xref: BTO:0000494 xref: BTO:0001504 -xref: MESH:D054239 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D054239 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C34150 xref: TAO:0001175 xref: Wikipedia:Germinal_disc @@ -252103,14 +252833,14 @@ xref: ZFA:0001455 is_a: UBERON:0004765 ! skeletal element relationship: part_of UBERON:0007831 {source="VSAO"} ! pectoral girdle skeleton property_value: axiom_lost_from_external_ontology "relationship loss: part_of scapular area (AAO:0000935)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000781", ontology="AAO"} +property_value: dc:contributor https://github.com/alex-dececchi +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: editor_note "todo - decide whether to create separate classes for cartilage & ossified. Wikipedia considers this absent in Therians, but if considered as a grouping of scapula and coracoid then it would be present" xsd:string property_value: external_definition "either a fusion of the scapula and coracoid (the two main bones of the shoulder girdle), or the scapula & coracoid considered as a single structural unit.[Palaeos]" xsd:string {date_retrieved="2012-09-10", source="http://palaeos.com/vertebrates/glossary/glossaryS.html"} property_value: external_definition "Fused, ossified portions of the scapula, procoracoid, and coracoid.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000781", ontology="AAO", source="AAO:LAP"} property_value: external_definition "Pectoral fin cartilage that consists of a paired cartilaginous plate of the embryonic primary pectoral girdle and from which the scapular and coracaoid bones ossify.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001455", ontology="TAO", source="TAO:GA_TG", source="ZFIN:curator"} property_value: external_ontology_notes "ZFA defines as precursor to scapula and coracoid. Cartilage in TAO" xsd:string {external_ontology="ZFA"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/alex-dececchi -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly [Term] id: UBERON:0004754 @@ -254069,9 +254799,9 @@ is_a: UBERON:0002429 ! cervical lymph node is_a: UBERON:0003968 {source="CL:tm"} ! peripheral lymph node is_a: UBERON:0015917 ! superficial lymph node relationship: dubious_for_taxon NCBITaxon:10090 {source="PMID:16624319"} ! Mus musculus +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/4e/Illu_quiz_hn_03.jpg" xsd:anyURI -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan [Term] id: UBERON:0004871 @@ -254344,8 +255074,13 @@ is_a: UBERON:0004886 ! lung hilus intersection_of: UBERON:0004886 ! lung hilus intersection_of: part_of UBERON:0002168 ! left lung relationship: part_of UBERON:0002168 ! left lung -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb" xsd:anyURI property_value: external_definition "The part of the left lung that is not covered by pleura and through which blood vessels, bronchi, nerves and lymphatics enter and leave the lung. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000483", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/lung+hilus"} [Term] @@ -254368,8 +255103,13 @@ is_a: UBERON:0004886 ! lung hilus intersection_of: UBERON:0004886 ! lung hilus intersection_of: part_of UBERON:0002167 ! right lung relationship: part_of UBERON:0002167 ! right lung -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb" xsd:anyURI property_value: external_definition "The part of the right lung that is not covered by pleura and through which blood vessels, bronchi, nerves and lymphatics enter and leave the lung. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000482", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/lung+hilus"} [Term] @@ -254579,7 +255319,7 @@ synonym: "optic nerve" BROAD [BTO:0000966] synonym: "optic nerve (generic)" EXACT [] xref: BTO:0000966 xref: EV:0100351 -xref: FBbt:00001956 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001956 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: TADS:0000232 is_a: UBERON:0000122 ! neuron projection bundle intersection_of: UBERON:0000122 ! neuron projection bundle @@ -254597,7 +255337,7 @@ name: articulation def: "Anatomical structure that connects two or more adjacent skeletal elements or hardened body parts." [http://orcid.org/0000-0002-6601-2165] subset: grouping_class synonym: "joint" NARROW [] -xref: FBbt:00005811 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005811 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0034921 ! multi organ part structure relationship: part_of UBERON:0004770 ! articular system @@ -254765,7 +255505,8 @@ xref: SCTID:245389007 is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0000320 ! duodenal mucosa property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/43/Gray1057.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.0/assets/VH_M_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.1/assets/VH_M_Small_Intestine.glb" xsd:anyURI [Term] id: UBERON:0004915 @@ -254895,7 +255636,7 @@ synonym: "gut section" RELATED [FBbt:00100315] synonym: "intestinal tract" RELATED [] synonym: "segment of intestinal tract" RELATED [] synonym: "subdivision of alimentary system" RELATED [FMA:71131] -xref: FBbt:00100315 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00100315 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:71131 is_a: UBERON:0013522 ! subdivision of tube intersection_of: UBERON:0013522 ! subdivision of tube @@ -257908,10 +258649,12 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/0/02/Gr id: UBERON:0005099 name: short descending thin limb def: "The short descending thin limb is the descending thin limb of a short nephron that has a squamous epithelial morphology[GO]." [GO:0072063] +subset: human_reference_atlas is_a: UBERON:0004211 ! nephron epithelium is_a: UBERON:0006914 ! squamous epithelium relationship: has_part CL:0000076 ! squamous epithelial cell relationship: part_of UBERON:0001285 ! nephron +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: editor_note "TODO - epithelium types" xsd:string [Term] @@ -258438,7 +259181,7 @@ synonym: "invertebrate tracheal system" EXACT [] synonym: "open tracheal system" EXACT [] synonym: "tracheal system" BROAD SENSU [FBbt:00005024] xref: BTO:0003870 -xref: FBbt:00005024 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005024 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: SPD:0000427 xref: TADS:0000043 is_a: UBERON:0001004 ! respiratory system @@ -258476,8 +259219,8 @@ is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000353 ! parenchyma intersection_of: part_of UBERON:0001017 ! central nervous system relationship: part_of UBERON:0001017 ! central nervous system -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0005159 @@ -258533,7 +259276,7 @@ synonym: "multi-cell-component structure" EXACT [CARO:0001000] synonym: "multi-cell-part structure" EXACT [CARO:0001000] xref: AAO:0011000 xref: CARO:0001000 -xref: FBbt:00007060 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007060 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:83115 is_a: UBERON:0000061 ! anatomical structure relationship: composed_primarily_of GO:0005575 ! cellular_component @@ -258974,8 +259717,8 @@ relationship: contributes_to_morphology_of UBERON:0004042 ! spleen secondary B f relationship: part_of UBERON:0002106 ! spleen relationship: part_of UBERON:0004042 {source="CL:tm"} ! spleen secondary B follicle relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0005197 @@ -260207,7 +260950,7 @@ xref: EHDAA:5526 xref: EMAPA:17082 xref: HBA:9512 xref: MA:0000205 -xref: MESH:D054024 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D054024 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: VHOG:0000456 xref: Wikipedia:Myelencephalon is_a: UBERON:0004733 ! segmental subdivision of hindbrain @@ -260466,6 +261209,7 @@ property_value: taxon_notes "there is no true anatomical equivalent in humans" x id: UBERON:0005303 name: hypogastric nerve def: "The transition between the superior hypogastric plexus and the inferior hypogastric plexus." [Wikipedia:Hypogastric_nerve] +subset: human_reference_atlas synonym: "hypogastric nerve plexus" EXACT [MA:0001140] synonym: "hypogastric plexus" EXACT [EMAPA:18225] synonym: "nervus hypogastricus" RELATED OMO:0003011 [Wikipedia:Hypogastric_nerve] @@ -260479,6 +261223,7 @@ xref: UMLS:C1711378 {source="ncithesaurus:Hypogastric_Nerve_Plexus"} xref: Wikipedia:Hypogastric_nerve is_a: UBERON:0001816 ! autonomic nerve plexus relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray847.png" xsd:anyURI property_value: editor_note "check plexus vs nerve. WP indicates it is a 'transition'" xsd:string @@ -260875,7 +261620,7 @@ def: "The chorioallantoic membrane is a vascular membrane found in eggs of some synonym: "chorioallantois" EXACT [BTO:0000251] synonym: "respiratory membrane" BROAD [ISBN:0073040584] xref: BTO:0000251 -xref: MESH:D049033 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D049033 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C28216 xref: UMLS:C0178551 {source="ncithesaurus:Chorioallantoic_Membrane"} xref: Wikipedia:Chorioallantoic_membrane @@ -261001,7 +261746,7 @@ xref: BAMS:CTXpl xref: DHBA:10515 xref: EMAPA:32711 xref: MBA:695 -xref: MESH:D002540 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D002540 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:2702 xref: PBA:294021914 is_a: UBERON:0014950 ! layer of developing cerebral cortex @@ -261364,7 +262109,7 @@ xref: EMAPA:35209 xref: FMA:242770 is_a: UBERON:0004923 ! organ component layer relationship: part_of UBERON:0001016 ! nervous system -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/cmungall [Term] id: UBERON:0005359 @@ -261522,6 +262267,7 @@ property_value: homology_notes "These (the epibranchial placodes) are focal thic id: UBERON:0005364 name: superior vagus X ganglion def: "The upper ganglion of the vagus nerve located at the jugular foramen." [ISBN:0-683-40008-8, MP:0001101] +subset: human_reference_atlas subset: pheno_slim synonym: "ganglion superius (nervus vagus)" EXACT [FMA:6229] synonym: "ganglion superius nervus vagi" EXACT OMO:0003011 [FMA:6229, FMA:TA] @@ -261542,6 +262288,7 @@ xref: SCTID:280197008 xref: VHOG:0000686 xref: Wikipedia:Superior_ganglion_of_vagus_nerve is_a: UBERON:0005362 ! vagus X ganglion +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0005366 @@ -261957,7 +262704,7 @@ is_a: UBERON:0010499 {source="Wikipedia"} ! pseudostratified ciliated columnar e intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0015786 ! respiratory segment of nasal mucosa relationship: part_of UBERON:0015786 ! respiratory segment of nasal mucosa -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/cmungall [Term] id: UBERON:0005386 @@ -262011,7 +262758,7 @@ id: UBERON:0005388 name: photoreceptor array def: "An array of photoreceptors and any supporting cells found in an eye." [https://orcid.org/0000-0002-6601-2165] synonym: "light-sensitive tissue" EXACT [] -xref: FBbt:00004200 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004200 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0004923 ! organ component layer intersection_of: UBERON:0004923 ! organ component layer intersection_of: composed_primarily_of CL:0000210 ! photoreceptor cell @@ -262393,7 +263140,7 @@ xref: EMAPA:36576 xref: FMA:77614 xref: MA:0002972 xref: MBA:493 -xref: MESH:D066328 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D066328 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:2341 xref: NLX:57107 xref: PBA:10091 @@ -262488,11 +263235,11 @@ subset: pheno_slim synonym: "circumventricular organ" EXACT [NLXANAT:20090312] synonym: "circumventricular organ of neuraxis" EXACT [FMA:84081] synonym: "CVO" EXACT OMO:0003000 [NLXANAT:20090312] -xref: BTO:0006267 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006267 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EMAPA:35243 xref: FMA:84081 xref: MA:0002942 -xref: MESH:D066280 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D066280 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:1242 xref: NLXANAT:20090312 xref: Wikipedia:Circumventricular_organs @@ -262850,7 +263597,7 @@ synonym: "developmental tissue" RELATED [MIAA:0000019] xref: AEO:0000125 xref: CALOHA:TS-2122 xref: EHDAA2:0003125 -xref: FBbt:00007006 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007006 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:292313 xref: MIAA:0000019 is_a: UBERON:0000465 ! material anatomical entity @@ -263147,8 +263894,10 @@ relationship: connecting_branch_of UBERON:0001640 ! celiac artery relationship: part_of RO:0002577 ! system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/65/Gray532.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI [Term] id: UBERON:0005437 @@ -263182,7 +263931,7 @@ xref: EHDAA2:0000320 xref: EHDAA:9884 xref: EMAPA:37836 {source="MA:th"} xref: FMA:4706 -xref: MESH:D054326 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D054326 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32378 xref: SCTID:244386006 xref: UMLS:C0456944 {source="ncithesaurus:Coronary_Sinus"} @@ -263195,8 +263944,12 @@ relationship: part_of UBERON:0000948 ! heart relationship: part_of UBERON:0004581 ! systemic venous system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray491.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI property_value: structure_notes "The sinus, before entering the auricle, is considerably dilated - nearly to the size of the end of the little finger. Its wall is partly muscular, and at its junction with the great coronary vein is somewhat constricted and furnished with a valve consisting of two unequal segments" xsd:string {source="WP"} [Term] @@ -263624,7 +264377,7 @@ xref: EHDAA2:0000893 xref: EHDAA:10631 xref: EMAPA:18713 xref: FMA:56432 -xref: MESH:D000080869 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D000080869 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C12496 xref: SCTID:361735006 xref: UMLS:C0222712 {source="ncithesaurus:Jugular_Foramen"} @@ -263657,8 +264410,12 @@ is_a: UBERON:0005483 ! thymus lobe intersection_of: UBERON:0005483 ! thymus lobe intersection_of: in_left_side_of UBERON:0002370 ! thymus relationship: in_left_side_of UBERON:0002370 ! thymus -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Thymus.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.0/assets/VH_F_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.1/assets/VH_F_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.2/assets/VH_F_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.0/assets/VH_M_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.1/assets/VH_M_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.2/assets/VH_M_Thymus.glb" xsd:anyURI property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] @@ -263890,8 +264647,12 @@ is_a: UBERON:0005483 ! thymus lobe intersection_of: UBERON:0005483 ! thymus lobe intersection_of: in_right_side_of UBERON:0002370 ! thymus relationship: in_right_side_of UBERON:0002370 ! thymus -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Thymus.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.0/assets/VH_F_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.1/assets/VH_F_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.2/assets/VH_F_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.0/assets/VH_M_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.1/assets/VH_M_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.2/assets/VH_M_Thymus.glb" xsd:anyURI property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] @@ -263994,6 +264755,7 @@ property_value: external_definition "The sigmoid sinuses, within a human head, a id: UBERON:0005476 name: spinal nerve trunk def: "Trunk part of spinal nerve, where dorsal and ventral roots meet to form the spinal nerve, before branching off to dorsal and ventral rami." [http://orcid.org/0000-0002-6601-2165] +subset: human_reference_atlas synonym: "spinal nerve (trunk)" EXACT [FMA:5929] synonym: "spinal neural trunk" EXACT [FMA:5929] synonym: "trunk of spinal nerve" EXACT [FMA:5929] @@ -264003,6 +264765,7 @@ is_a: UBERON:0002464 ! nerve trunk intersection_of: UBERON:0002464 ! nerve trunk intersection_of: part_of UBERON:0001780 ! spinal nerve relationship: part_of UBERON:0001780 ! spinal nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0005477 @@ -264170,7 +264933,7 @@ xref: UMLS:C0225848 {source="ncithesaurus:Eustachian_Valve"} xref: Wikipedia:Valve_of_inferior_vena_cava is_a: UBERON:0000946 ! cardiac valve is_a: UBERON:0006675 ! venous valve -relationship: part_of UBERON:0001072 ! posterior vena cava +relationship: part_of UBERON:0001072 ! inferior vena cava property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray493.png" xsd:anyURI property_value: editor_note "this class should be subdivided into the embryonic structure and the vestigial adult remnant, a small endocardialfold" xsd:string property_value: external_definition "Vestigial cardiac valve which is continuous with the valve of the coronary sinus and the crista terminalis." xsd:string {source="FMA:9240"} @@ -264243,6 +265006,7 @@ property_value: homology_notes "Within each vertebrate group, the veins compose id: UBERON:0005488 name: superior mesenteric plexus def: "The superior mesenteric plexus is a continuation of the lower part of the celiac plexus, receiving a branch from the junction of the right vagus nerve with the plexus. It surrounds the superior mesenteric artery, accompanies it into the mesentery, and divides into a number of secondary plexuses, which are distributed to all the parts supplied by the artery, viz. , pancreatic branches to the pancreas; intestinal branches to the small intestine; and ileocolic, right colic, and middle colic branches, which supply the corresponding parts of the great intestine. The nerves composing this plexus are white in color and firm in texture; in the upper part of the plexus close to the origin of the superior mesenteric artery is the superior mesenteric ganglion." [Wikipedia:Superior_mesenteric_plexus] +subset: human_reference_atlas synonym: "plexus mesentericus superior" EXACT OMO:0003011 [Wikipedia:Superior_mesenteric_plexus] synonym: "superior mesenteric nerve plexus" EXACT [FMA:6639] xref: FMA:6639 @@ -264256,6 +265020,7 @@ intersection_of: innervates UBERON:0000059 ! large intestine relationship: extends_fibers_into UBERON:0002010 ! celiac nerve plexus relationship: innervates UBERON:0000059 ! large intestine relationship: part_of RO:0002577 ! system +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/63/Gray848.png" xsd:anyURI [Term] @@ -264429,7 +265194,7 @@ def: "Multi-tissue structure that arises from the heart rudiment and will become subset: vertebrate_core synonym: "early primitive heart tube" NARROW [EMAPA:16208] synonym: "primitive heart tube" EXACT [EMAPA:16215] -xref: BTO:0006179 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006179 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EHDAA2:0001512 xref: EHDAA:424 xref: EHDAA:436 @@ -265798,7 +266563,7 @@ name: extraembryonic membrane def: "Intrinsic membrane that arises from embryonic germ layers and grow to surround the developing embryo." [ISBN:0073040584] xref: EHDAA2:0004714 xref: FMA:305915 -xref: MESH:D005321 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D005321 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:362840007 is_a: UBERON:0000158 ! membranous layer relationship: part_of UBERON:0004716 ! conceptus @@ -267139,7 +267904,7 @@ synonym: "tunica advetitia" NARROW [Wikipedia:Adventitia] synonym: "tunica externa" NARROW [FMA:45635] xref: BTO:0002010 xref: FMA:45635 -xref: MESH:D063194 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D063194 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:30180000 xref: Wikipedia:Adventitia is_a: UBERON:0004923 ! organ component layer @@ -267408,7 +268173,7 @@ xref: EMAPA:28251 xref: EMAPA:30965 xref: FMA:74274 xref: MA:0001659 -xref: MESH:D050533 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D050533 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32683 xref: SCTID:243897006 xref: TAO:0005285 @@ -268647,7 +269412,7 @@ id: UBERON:0005895 name: insect leg def: "The walking appendages of each segment of the ventral adult external thorax[FBbt]. A leg derived from an imaginal disc[GO]." [FBbt:00004640, GO:0007480] synonym: "imaginal disc-derived leg" EXACT [GO:0007480] -xref: FBbt:00004640 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004640 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MAT:0000095 xref: MIAA:0000095 xref: TGMA:0000164 @@ -268730,7 +269495,7 @@ synonym: "occipital region of head" EXACT [FMA:49187] xref: AAO:0010199 xref: BTO:0004675 xref: FMA:49187 -xref: MESH:D009778 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D009778 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:2431 xref: SCTID:362618001 xref: TAO:0001414 @@ -268785,7 +269550,7 @@ synonym: "insect labium" EXACT [BTO:0004104] synonym: "labium" RELATED [BTO:0004104] synonym: "labrum" RELATED [BTO:0004104] xref: BTO:0004104 -xref: FBbt:00004522 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004522 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000456 xref: TADS:0000039 xref: Wikipedia:Labrum_(arthropod_mouthpart) @@ -268805,7 +269570,7 @@ xref: SCTID:362890006 is_a: UBERON:0000062 ! organ relationship: has_part UBERON:0000042 ! serous membrane relationship: has_part UBERON:0002553 ! anatomical cavity -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/cmungall [Term] id: UBERON:0005908 @@ -268826,8 +269591,8 @@ relationship: part_of UBERON:0035639 {source="HPO:pr"} ! ocular adnexa id: UBERON:0005910 name: obsolete transitional epithelium def: "See urothelium." [https://github.com/obophenotype/uberon/issues/92] +property_value: dc:contributor https://github.com/cmungall property_value: editor_note "was merged with urothelium. MA uses the label 'urothelium' exclusively. FMA uses 'transitional epithelium' and has 'urothelium' as a sibling. FMA also lists 'urothelium' as the only example of 'transitional epithelium'. MP treats them differently" xsd:string {seeAlso="https://github.com/obophenotype/uberon/issues/92"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall is_obsolete: true replaced_by: UBERON:0000365 @@ -269118,9 +269883,9 @@ relationship: develops_from UBERON:0003089 ! sclerotome relationship: part_of UBERON:0004288 ! skeleton relationship: part_of UBERON:0011137 ! axial skeletal system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +property_value: dc:contributor https://github.com/cmungall property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8b/Axial_skeleton_diagram.svg" xsd:anyURI property_value: external_definition "Skeletal subdivision of the central body axis including the cranium, vertebrae, notochord, ribs, and sternum.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000056", ontology="VSAO", source="PSPUB:0000170"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/docs/The-axial-skeleton" xsd:anyURI [Term] @@ -269308,10 +270073,18 @@ relationship: part_of UBERON:0000019 ! camera-type eye relationship: part_of UBERON:0003956 ! aqueous drainage system relationship: surrounds UBERON:0001766 ! anterior chamber of eyeball property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/22/Gray870.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-l.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-r.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-l.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.0/assets/VH_F_Eye_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.1/assets/VH_F_Eye_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.2/assets/3d-vh-f-eye-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.0/assets/VH_F_Eye_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.1/assets/VH_F_Eye_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.2/assets/3d-vh-f-eye-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.0/assets/VH_M_Eye_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.1/assets/VH_M_Eye_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.2/assets/3d-vh-m-eye-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.0/assets/VH_M_Eye_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.1/assets/VH_M_Eye_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.2/assets/3d-vh-m-eye-r.glb" xsd:anyURI property_value: editor_note "TODO check syns - ligaments" xsd:string [Term] @@ -270766,8 +271539,10 @@ relationship: develops_from UBERON:0005760 {source="EHDAA2-modified"} ! urorecta relationship: develops_from UBERON:0009845 {source="EHDAA2"} ! urogenital sinus mesenchyme relationship: part_of UBERON:0001255 ! urinary bladder relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Urinary_Bladder.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Urinary_Bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.0/assets/VH_F_Urinary_Bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.1/assets/VH_F_Urinary_Bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.0/assets/VH_M_Urinary_Bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.1/assets/VH_M_Urinary_Bladder.glb" xsd:anyURI [Term] id: UBERON:0006083 @@ -270788,7 +271563,7 @@ xref: EFO:0001978 xref: EMAPA:35682 xref: MA:0000912 xref: MBA:922 -xref: MESH:D000071039 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D000071039 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:2425 xref: NLXANAT:1005006 xref: PBA:128012080 @@ -270977,8 +271752,12 @@ is_a: UBERON:0000200 {source="FMA"} ! gyrus is_a: UBERON:0014640 ! occipital gyrus relationship: part_of UBERON:0002021 ! occipital lobe relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0006093 @@ -271005,8 +271784,12 @@ xref: Wikipedia:Precuneus is_a: UBERON:0000200 {source="FMA"} ! gyrus relationship: part_of UBERON:0001872 ! parietal lobe relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0006094 @@ -271118,7 +271901,7 @@ xref: BAMS:BG xref: BAMS:BNC xref: BIRNLEX:1629 xref: EV:0100182 -xref: MESH:D001479 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D001479 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:224 {source="BIRNLEX:1629"} xref: UMLS:C0004781 {source="BIRNLEX:1629"} is_a: UBERON:0007245 ! nuclear complex of neuraxis @@ -271328,7 +272111,7 @@ xref: BAMS:CMA xref: BIRNLEX:2680 xref: DHBA:10372 xref: FMA:84015 -xref: MESH:D066276 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D066276 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:238 {source="BIRNLEX:2680"} xref: UMLS:C0175214 {source="BIRNLEX:2680"} is_a: UBERON:0005401 ! cerebral hemisphere gray matter @@ -274670,7 +275453,7 @@ synonym: "fibrocartilaginous ring" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "fibrous ring" RELATED [BTO:0003627] xref: BTO:0003627 xref: FMA:76704 -xref: MESH:D000070616 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D000070616 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0001995 ! fibrocartilage [Term] @@ -274717,8 +275500,8 @@ xref: SCTID:278775008 xref: UMLS:C0457871 {source="BIRNLEX:1251"} is_a: UBERON:0007716 ! lumbar subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI [Term] id: UBERON:0006448 @@ -274735,8 +275518,8 @@ xref: SCTID:278776009 xref: UMLS:C0457872 {source="BIRNLEX:1336"} is_a: UBERON:0007716 ! lumbar subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI [Term] id: UBERON:0006449 @@ -274753,8 +275536,8 @@ xref: SCTID:278778005 xref: UMLS:C0457874 {source="BIRNLEX:1340"} is_a: UBERON:0007716 ! lumbar subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI [Term] id: UBERON:0006450 @@ -274771,8 +275554,8 @@ xref: SCTID:278777000 xref: UMLS:C0457873 {source="BIRNLEX:1345"} is_a: UBERON:0007716 ! lumbar subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI [Term] id: UBERON:0006451 @@ -274789,8 +275572,8 @@ xref: SCTID:278779002 xref: UMLS:C0457875 {source="BIRNLEX:1352"} is_a: UBERON:0007716 ! lumbar subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI [Term] id: UBERON:0006452 @@ -274808,8 +275591,8 @@ xref: SCTID:278766006 xref: UMLS:C0457862 {source="BIRNLEX:1378"} is_a: UBERON:0007715 ! thoracic subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI [Term] id: UBERON:0006453 @@ -274826,8 +275609,8 @@ xref: SCTID:278767002 xref: UMLS:C0457863 {source="BIRNLEX:1383"} is_a: UBERON:0007715 ! thoracic subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI [Term] id: UBERON:0006454 @@ -274844,8 +275627,8 @@ xref: SCTID:278768007 xref: UMLS:C0457864 {source="BIRNLEX:1387"} is_a: UBERON:0007715 ! thoracic subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI [Term] id: UBERON:0006455 @@ -274862,8 +275645,8 @@ xref: SCTID:278769004 xref: UMLS:C0457865 {source="BIRNLEX:1392"} is_a: UBERON:0007715 ! thoracic subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI [Term] id: UBERON:0006456 @@ -274880,8 +275663,8 @@ xref: SCTID:278770003 xref: UMLS:C0457866 {source="BIRNLEX:1398"} is_a: UBERON:0007715 ! thoracic subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI [Term] id: UBERON:0006457 @@ -274898,8 +275681,8 @@ xref: SCTID:278762008 xref: UMLS:C0457859 {source="BIRNLEX:1452"} is_a: UBERON:0007715 ! thoracic subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI [Term] id: UBERON:0006458 @@ -274916,8 +275699,8 @@ xref: SCTID:278763003 xref: UMLS:C0457860 {source="BIRNLEX:1454"} is_a: UBERON:0007715 ! thoracic subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI [Term] id: UBERON:0006459 @@ -274934,8 +275717,8 @@ xref: SCTID:278764009 xref: UMLS:C0457861 {source="BIRNLEX:1458"} is_a: UBERON:0007715 ! thoracic subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI [Term] id: UBERON:0006460 @@ -274952,8 +275735,8 @@ xref: SCTID:278780004 xref: UMLS:C0457876 {source="BIRNLEX:1532"} is_a: UBERON:0007717 ! sacral subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI [Term] id: UBERON:0006461 @@ -274970,8 +275753,8 @@ xref: SCTID:278781000 xref: UMLS:C0457877 {source="BIRNLEX:1539"} is_a: UBERON:0007717 ! sacral subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI [Term] id: UBERON:0006462 @@ -274988,8 +275771,8 @@ xref: SCTID:278782007 xref: UMLS:C0457878 {source="BIRNLEX:1544"} is_a: UBERON:0007717 ! sacral subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI [Term] id: UBERON:0006463 @@ -275006,8 +275789,8 @@ xref: SCTID:278783002 xref: UMLS:C0457879 {source="BIRNLEX:1548"} is_a: UBERON:0007717 ! sacral subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI [Term] id: UBERON:0006464 @@ -275024,7 +275807,7 @@ xref: SCTID:278784008 xref: UMLS:C0457880 {source="BIRNLEX:1553"} is_a: UBERON:0007717 ! sacral subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI [Term] id: UBERON:0006465 @@ -275041,8 +275824,8 @@ xref: SCTID:278771004 xref: UMLS:C0457867 {source="BIRNLEX:1584"} is_a: UBERON:0007715 ! thoracic subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI [Term] id: UBERON:0006466 @@ -275059,8 +275842,8 @@ xref: SCTID:278772006 xref: UMLS:C0457868 {source="BIRNLEX:1591"} is_a: UBERON:0007715 ! thoracic subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI [Term] id: UBERON:0006467 @@ -275077,8 +275860,8 @@ xref: SCTID:278773001 xref: UMLS:C0457869 {source="BIRNLEX:1596"} is_a: UBERON:0007715 ! thoracic subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI [Term] id: UBERON:0006468 @@ -275095,8 +275878,8 @@ xref: SCTID:278774007 xref: UMLS:C0457870 {source="BIRNLEX:1598"} is_a: UBERON:0007715 ! thoracic subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI [Term] id: UBERON:0006469 @@ -275114,8 +275897,8 @@ xref: SCTID:278754000 xref: UMLS:C0457851 {source="BIRNLEX:1694"} is_a: UBERON:0007714 ! cervical subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI [Term] id: UBERON:0006470 @@ -275132,8 +275915,8 @@ xref: SCTID:278761001 xref: UMLS:C0457858 {source="BIRNLEX:1696"} is_a: UBERON:0007714 ! cervical subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI [Term] id: UBERON:0006471 @@ -275564,8 +276347,8 @@ xref: SCTID:278756003 xref: UMLS:C0457853 {source="BIRNLEX:744"} is_a: UBERON:0007714 ! cervical subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI [Term] id: UBERON:0006489 @@ -275582,8 +276365,8 @@ xref: SCTID:278755004 xref: UMLS:C0457852 {source="BIRNLEX:752"} is_a: UBERON:0007714 ! cervical subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI [Term] id: UBERON:0006490 @@ -275600,8 +276383,8 @@ xref: SCTID:278757007 xref: UMLS:C0457854 {source="BIRNLEX:753"} is_a: UBERON:0007714 ! cervical subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI [Term] id: UBERON:0006491 @@ -275618,8 +276401,8 @@ xref: SCTID:278758002 xref: UMLS:C0457855 {source="BIRNLEX:760"} is_a: UBERON:0007714 ! cervical subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI [Term] id: UBERON:0006492 @@ -275636,8 +276419,8 @@ xref: SCTID:278759005 xref: UMLS:C0457856 {source="BIRNLEX:766"} is_a: UBERON:0007714 ! cervical subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI [Term] id: UBERON:0006493 @@ -275654,8 +276437,8 @@ xref: SCTID:278760000 xref: UMLS:C0457857 {source="BIRNLEX:773"} is_a: UBERON:0007714 ! cervical subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI [Term] id: UBERON:0006494 @@ -275807,7 +276590,7 @@ xref: EMAPA:32780 xref: FMA:83684 xref: MA:0000889 xref: MBA:803 -xref: MESH:D005917 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D005917 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:2673 is_a: UBERON:0002020 {source="FMA"} ! gray matter is_a: UBERON:0003528 ! brain gray matter @@ -275851,6 +276634,14 @@ xref: UMLS:C0022651 {source="ncithesaurus:Renal_Calyx"} is_a: UBERON:0000063 ! organ subunit relationship: contributes_to_morphology_of UBERON:0001224 ! renal pelvis relationship: part_of UBERON:0001224 ! renal pelvis +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb" xsd:anyURI property_value: has_relational_adjective "calyceal" xsd:string [Term] @@ -276442,8 +277233,10 @@ xref: Wikipedia:Ligamentum_venosum is_a: UBERON:0006592 {source="FMA"} ! transformed vein relationship: develops_from UBERON:0002083 ! ductus venosus property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a3/Gray1087-liver.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb" xsd:anyURI [Term] id: UBERON:0006588 @@ -276454,7 +277247,7 @@ synonym: "ligamentum teres hepatis" EXACT OMO:0003011 [FMA:14079, FMA:TA] synonym: "ligamentum teres hepatitis" EXACT [Wikipedia:Round_ligament_of_liver] synonym: "ligamentum teres of liver" EXACT [FMA:14079] xref: FMA:14079 -xref: MESH:D000069592 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D000069592 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C34008 xref: SCTID:262209009 xref: UMLS:C0230247 {source="ncithesaurus:Round_Ligament_of_the_Liver"} @@ -276465,8 +277258,10 @@ is_a: UBERON:0013139 ! ligament of liver disjoint_from: UBERON:0006589 ! round ligament of uterus relationship: develops_from UBERON:0002066 ! umbilical vein relationship: only_in_taxon NCBITaxon:40674 {source="Wikipedia"} ! Mammalia -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb" xsd:anyURI [Term] id: UBERON:0006589 @@ -276480,7 +277275,7 @@ synonym: "round ligament" BROAD [GAID:130] synonym: "round ligament of the uterus" EXACT [Wikipedia:Round_ligament_of_uterus] xref: FMA:20420 xref: GAID:130 -xref: MESH:D012404 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D012404 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C34009 xref: SCTID:245495009 xref: UMLS:C0035877 {source="ncithesaurus:Round_Ligament_of_the_Uterus"} @@ -276849,7 +277644,7 @@ synonym: "aponeurotic" RELATED [Wikipedia:Aponeurosis] xref: AEO:0000092 xref: EHDAA2:0003092 xref: FMA:9722 -xref: MESH:D000070606 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D000070606 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32133 xref: SCTID:331712004 xref: UMLS:C0225205 {source="ncithesaurus:Aponeurosis"} @@ -277511,7 +278306,7 @@ synonym: "glenoid facet" EXACT [] xref: AAO:0000749 xref: EMAPA:25122 xref: FMA:23275 -xref: MESH:D061165 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D061165 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C32682 xref: SCTID:181914008 xref: UMLS:C1261046 {source="ncithesaurus:Glenoid_Fossa"} @@ -277853,7 +278648,7 @@ name: venous valve def: "A valve that is part of a vein." [OBOL:automatic] synonym: "valve of vein" EXACT [FMA:68095] xref: FMA:68095 -xref: MESH:D055422 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D055422 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0003978 ! valve is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003978 ! valve @@ -277942,8 +278737,8 @@ relationship: connects UBERON:0003126 ! trachea relationship: part_of UBERON:0003126 ! trachea relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f2/Diagrama_de_los_pulmones-c.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-trachea.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-trachea.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/trachea-female/v1.0/assets/3d-vh-f-trachea.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/trachea-male/v1.0/assets/3d-vh-m-trachea.glb" xsd:anyURI [Term] id: UBERON:0006680 @@ -278061,8 +278856,11 @@ relationship: connected_to UBERON:0001139 ! common iliac vein relationship: part_of RO:0002577 ! system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: tributary_of UBERON:0001317 {source="FMA/obol"} ! internal iliac vein -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI [Term] id: UBERON:0006688 @@ -278155,7 +278953,7 @@ synonym: "vertebral canal" RELATED [Wikipedia:Spinal_canal] xref: AAO:0000693 xref: FMA:9680 xref: GAID:242 -xref: MESH:D013115 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D013115 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C33869 xref: NCIT:C34221 xref: SCTID:361746009 @@ -278665,8 +279463,10 @@ xref: MA:0001641 xref: SCTID:271288003 is_a: UBERON:0001115 ! left lobe of liver disjoint_from: UBERON:0006728 {source="lexical"} ! liver left medial lobe -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb" xsd:anyURI [Term] id: UBERON:0006728 @@ -278679,8 +279479,10 @@ xref: FMA:14500 xref: MA:0001642 xref: SCTID:271085007 is_a: UBERON:0001115 ! left lobe of liver -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb" xsd:anyURI [Term] id: UBERON:0006729 @@ -279371,7 +280173,7 @@ id: UBERON:0006795 name: arthropod optic lobe def: "A region of the adult brain that processes the visual information from the compound eyes." [FBC:gg, ISBN:978-3-11-014898-5] synonym: "optic lobe" RELATED SENSU [FBbt:00003701] -xref: FBbt:00003701 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003701 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006794 ! visual processing part of nervous system relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda @@ -279577,10 +280379,10 @@ xref: Wikipedia:Lateral_epicondyle_of_the_humerus is_a: UBERON:0009978 {source="FMA"} ! epicondyle is_a: UBERON:0016497 ! epicondyle of humerus relationship: part_of UBERON:0004404 {source="FMA"} ! distal epiphysis of humerus +property_value: dc:contributor https://github.com/alex-dececchi +property_value: dc:contributor https://github.com/cmungall property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c6/Gray420.png" xsd:anyURI property_value: external_definition "Rounded projection at the distal head of the humerus (larger and more prominent than the lateral epicondyle) and lateral to the humeral head, which serves as a place of attachment for the mm extensor antebrachii et carpi radialis, extensor digitorum communis, and in part to the m extensor antebrachii et carpi ulnaris.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000758", ontology="AAO", source="AAO:LAP"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/alex-dececchi -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall [Term] id: UBERON:0006809 @@ -279601,7 +280403,7 @@ synonym: "olecranon process of ulna" EXACT [Wikipedia:Olecranon] synonym: "ulnar process" RELATED [AAO:0000843] xref: AAO:0000843 xref: FMA:39795 -xref: MESH:D056740 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D056740 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C33200 xref: SCTID:181949001 xref: UMLS:C0223710 {source="ncithesaurus:Olecranon"} @@ -279636,7 +280438,7 @@ synonym: "foramen mentalis" RELATED [Wikipedia:Mental_foramen] synonym: "mental foramina" EXACT OMO:0003004 [OBOL:automatic] xref: AAO:0000298 xref: FMA:53171 -xref: MESH:D000080383 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D000080383 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:244686000 xref: Wikipedia:Mental_foramen is_a: UBERON:0010313 ! neural crest-derived structure @@ -279770,7 +280572,7 @@ id: UBERON:0006832 name: lumen of open tracheal system trachea def: "An anatomical space that surrounded_by a open tracheal system trachea." [OBOL:automatic] synonym: "tracheal lumen" BROAD SENSU [FBbt:00007410] -xref: FBbt:00007410 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007410 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0003127 ! open tracheal system trachea @@ -279797,7 +280599,7 @@ name: uterus or analog def: "A subdivision of a the reproductive tract in a female organism that is the site of embryo development." [http://orcid.org/0000-0002-6601-2165] subset: grouping_class synonym: "uterus" BROAD SENSU [FBbt:00004924] -xref: FBbt:00004924 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004924 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: TADS:0000421 xref: WBbt:0006760 is_a: UBERON:0005156 ! reproductive structure @@ -279852,6 +280654,7 @@ property_value: editor_note "TODO - check AAO; grouping is made on basis of rela id: UBERON:0006838 name: ventral ramus of spinal nerve def: "Branch of spinal nerve that innervates the hypaxial muscles." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Spinal_nerve] +subset: human_reference_atlas synonym: "anterior branch of spinal nerve" RELATED [FMA:5982] synonym: "anterior primary ramus of spinal nerve" EXACT [FMA:5982] synonym: "anterior ramus of spinal nerve" EXACT [FMA:5982] @@ -279869,12 +280672,14 @@ disjoint_from: UBERON:0006839 {source="lexical"} ! dorsal ramus of spinal nerve relationship: branching_part_of UBERON:0005476 ! spinal nerve trunk relationship: innervates UBERON:0008777 ! hypaxial musculature relationship: part_of UBERON:0005476 ! spinal nerve trunk +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/d/d2/Spinal_nerve.svg" xsd:anyURI [Term] id: UBERON:0006839 name: dorsal ramus of spinal nerve def: "Branch of spinal nerve that innervates the epaxial muscles." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Spinal_nerve] +subset: human_reference_atlas synonym: "dorsal ramus" BROAD [FMA:5983] synonym: "posterior branch of spinal nerve" RELATED [FMA:5983] synonym: "posterior primary ramus" EXACT [FMA:5983] @@ -279890,6 +280695,7 @@ intersection_of: innervates UBERON:0008778 ! epaxial musculature relationship: branching_part_of UBERON:0005476 ! spinal nerve trunk relationship: innervates UBERON:0008778 ! epaxial musculature relationship: part_of UBERON:0005476 ! spinal nerve trunk +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b1/Gray819.png" xsd:anyURI [Term] @@ -279967,6 +280773,7 @@ subset: vertebrate_core synonym: "cranial nerve root" EXACT [FMA:52609] synonym: "cranial neural root" EXACT [FMA:52609] xref: FMA:52609 +xref: HBA:9299 xref: SCTID:280161004 xref: TAO:0002190 xref: ZFA:0001663 @@ -280382,7 +281189,7 @@ def: "The distalmost portion of the digestive tract, derived from the hindgut, a synonym: "rectal part of digestive tract" RELATED [] synonym: "rectum" NARROW [FBbt:00005756] synonym: "terminal section of digestive tract" RELATED [] -xref: FBbt:00005756 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005756 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: WBbt:0005773 is_a: UBERON:0004921 ! subdivision of digestive tract relationship: continuous_with UBERON:0001245 ! anus @@ -280411,7 +281218,7 @@ name: seminal fluid secreting gland def: "A gland that secretes a seminal fluid." [OBOL:automatic] subset: grouping_class subset: organ_slim -xref: FBbt:00004958 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004958 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: WBbt:0006870 is_a: UBERON:0005399 ! male reproductive gland intersection_of: UBERON:0002530 ! gland @@ -281068,7 +281875,6 @@ relationship: channel_for UBERON:0001968 ! semen relationship: channels_from UBERON:0000473 ! testis relationship: in_lateral_side_of UBERON:0004054 {source="FMA-abduced-lr"} ! internal male genitalia relationship: part_of UBERON:0004054 ! internal male genitalia -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb" xsd:anyURI property_value: external_ontology_notes "in FMA includes as parts: seminal vesicle, efferent ductule (vas efferentia), epididymis, deferent duct (vas deferens), ejaculatory duct" xsd:string {external_ontology="FMA"} property_value: taxon_notes "we use this as a generic grouping class for a number of taxa" xsd:string @@ -281248,8 +282054,12 @@ relationship: connected_to UBERON:0005438 ! coronary sinus relationship: in_left_side_of UBERON:0000948 ! heart relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/57/Gray556.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI [Term] id: UBERON:0006959 @@ -281563,7 +282373,7 @@ def: "A multicellular organism that existence_ends_with a post-juvenile adult st synonym: "adult" BROAD [] synonym: "adults" EXACT OMO:0003004 [TAO:0002046] xref: BILA:0000078 -xref: FBbt:00003004 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003004 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: galen:Adult xref: HAO:0000087 xref: http://neurolex.org/wiki/Category\:Adult_organism @@ -281757,7 +282567,7 @@ id: UBERON:0007109 name: meconium def: "A dark greenish mass that accumulates in the bowel during fetal life and is discharged shortly after birth." [BTO:0000838] xref: BTO:0000838 -xref: MESH:D008470 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D008470 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: ncithesaurus:Meconium is_a: UBERON:0001988 ! feces relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata @@ -282207,7 +283017,7 @@ subset: organ_slim synonym: "anterior kidney" EXACT [ZFA:0000669] synonym: "kidney marrow" EXACT [ZFA:0000669] xref: BTO:0005189 -xref: MESH:D060226 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D060226 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: TAO:0000669 xref: ZFA:0000669 is_a: UBERON:0003103 ! compound organ @@ -283044,6 +283854,8 @@ relationship: has_part UBERON:0003126 ! trachea relationship: has_part UBERON:0007592 {source="Wikipedia"} ! ciliated columnar epithelium relationship: part_of UBERON:0001558 ! lower respiratory tract relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI [Term] id: UBERON:0007197 @@ -283600,7 +284412,7 @@ name: preoptic nucleus def: "A nucleus of brain that is part of a preoptic area." [OBOL:automatic] xref: CALOHA:TS-0822 xref: EV:0100226 -xref: MESH:D011301 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D011301 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} is_a: UBERON:0006569 ! diencephalic nucleus intersection_of: UBERON:0002308 ! nucleus of brain intersection_of: part_of UBERON:0001928 ! preoptic area @@ -283806,7 +284618,7 @@ synonym: "pharyngoesophageal sphincter" EXACT [Wikipedia:Upper_esophageal_sphinc synonym: "upper esophageal sphincter muscle" EXACT [] synonym: "upper oesophageal sphincter" EXACT [Wikipedia:Upper_esophageal_sphincter] xref: FMA:265203 -xref: MESH:D049631 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D049631 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C33836 xref: UMLS:C1451819 {source="ncithesaurus:Upper_Esophageal_Sphincter"} xref: Wikipedia:Upper_esophageal_sphincter @@ -284570,7 +285382,7 @@ xref: EHDAA:9194 xref: EMAPA:32952 xref: FMA:10419 xref: MA:0000124 -xref: MESH:D010183 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D010183 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:181278006 xref: TAO:0001372 xref: VHOG:0000254 @@ -284962,7 +285774,7 @@ synonym: "outer epidermal layer" EXACT [] synonym: "outer epithelial layer" EXACT [] xref: BSA:0000073 xref: BTO:0000313 -xref: FBbt:00004993 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004993 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000298 xref: TADS:0000109 xref: WBbt:0005733 @@ -285163,7 +285975,7 @@ xref: DHBA:12222 xref: FMA:77787 xref: HBA:9455 xref: MBA:165 -xref: MESH:D066267 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D066267 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0002616 ! regional part of brain relationship: mutually_spatially_disjoint_with UBERON:0001965 {source="ABA"} ! substantia nigra pars compacta relationship: mutually_spatially_disjoint_with UBERON:0002142 {source="ABA"} ! pedunculopontine tegmental nucleus @@ -285884,7 +286696,7 @@ xref: DMBA:16973 xref: EMAPA:37436 {source="MA:th"} xref: MA:0001011 xref: MBA:280 -xref: MESH:D065835 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D065835 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:1087 is_a: UBERON:0006331 {source="MA"} ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus @@ -285954,7 +286766,7 @@ xref: DMBA:16844 xref: EMAPA:35657 xref: MA:0001019 xref: MBA:867 -xref: MESH:D065823 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D065823 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:1927 xref: NLX:23647 xref: Wikipedia:Parabrachial_nucleus @@ -286064,7 +286876,7 @@ xref: CALOHA:TS-2077 xref: DHBA:266441713 xref: FMA:71248 xref: HBA:9203 -xref: MESH:D014278 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D014278 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:2021 xref: UMLS:C0040999 {source="BIRNLEX:4096"} xref: Wikipedia:Trigeminal_nerve_nuclei @@ -286371,7 +287183,7 @@ synonym: "organ field" RELATED [] xref: AEO:0000170 xref: EFO:0001649 xref: EHDAA2:0003170 -xref: FBbt:00005426 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005426 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: Wikipedia:Anlage_(biology) is_a: UBERON:0000479 {source="FBbt"} ! tissue is_a: UBERON:0005423 {source="AEO", source="FBbt"} ! developing anatomical structure @@ -286498,10 +287310,10 @@ name: spinothalamic tract def: "A tract that originates from neurons in the spinal central gray and projects to various somatosensory nuclei of the thalamus. It is formed in the medulla by merger of the anterior spinothalamic tract and lateral spinothalamic tract (adapted from Braininfo.org)." [NLXANAT:1010017] xref: BAMS:spth xref: BAMS:stt -xref: BTO:0006128 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006128 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:12789 xref: MBA:871 -xref: MESH:D013133 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D013133 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:2058 xref: NLXANAT:1010017 xref: SCTID:280417000 @@ -287538,9 +288350,9 @@ is_a: UBERON:0003567 ! abdomen connective tissue intersection_of: UBERON:0001013 ! adipose tissue intersection_of: part_of UBERON:0000916 ! abdomen relationship: part_of UBERON:0000916 ! abdomen -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cindyJax -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/paulacalipho +property_value: dc:contributor https://github.com/cindyJax +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/paulacalipho [Term] id: UBERON:0007809 @@ -288034,9 +288846,9 @@ disjoint_from: UBERON:0010372 ! uncinate process of ethmoid disjoint_from: UBERON:0010373 ! uncinate process of pancreas relationship: never_in_taxon NCBITaxon:8827 {source="PMID:15755883"} ! Anhimidae relationship: part_of UBERON:0010388 {source="ISBN:0073040584"} ! proximal segment of rib +property_value: dc:contributor https://github.com/alex-dececchi +property_value: dc:contributor https://github.com/cmungall property_value: external_definition "Posteriorly directed process (occasionally directed anteriorly) usually associated with the rib (sometimes with the transverse process) of the third vertebra; they provide the origin of the mm serratus superior, medius, and inferior.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000741", ontology="AAO", source="AAO:Pugener_2002"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/alex-dececchi -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall [Term] id: UBERON:0007844 @@ -288412,10 +289224,10 @@ relationship: has_part CL:0000312 ! keratinocyte relationship: part_of UBERON:0001003 ! skin epidermis relationship: part_of UBERON:0001705 {source="MA"} ! nail relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/rfoulger property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/9/9f/Fingernail_label.jpg" xsd:anyURI property_value: external_ontology_notes "in FMA, the nail is the nail plate" xsd:string {external_ontology="FMA"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/rfoulger [Term] id: UBERON:0008199 @@ -288636,7 +289448,7 @@ xref: BTO:0002120 is_a: UBERON:0004921 ! subdivision of digestive tract relationship: only_in_taxon NCBITaxon:7586 ! Echinodermata relationship: part_of UBERON:0001007 ! digestive system -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/cmungall [Term] id: UBERON:0008250 @@ -288697,11 +289509,11 @@ is_a: UBERON:0035561 ! styliform element intersection_of: UBERON:0035561 ! styliform element intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +property_value: dc:contributor https://github.com/alex-dececchi +property_value: dc:contributor https://github.com/balhoff +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/RDruzinsky property_value: external_definition "shaft of skeletal tissue that articulates with the lateral border of the carpus." xsd:string {source="ISBN:0226313379"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/alex-dececchi -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/balhoff -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/RDruzinsky [Term] id: UBERON:0008255 @@ -288855,7 +289667,7 @@ xref: EMAPA:35679 xref: FMA:56665 xref: GAID:1259 xref: MA:0002467 -xref: MESH:D010513 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D010513 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:245775004 xref: Wikipedia:Periodontal_fiber is_a: UBERON:0008846 {source="FMA-moved"} ! skeletal ligament @@ -288866,12 +289678,12 @@ relationship: develops_from UBERON:0002342 {is_entailed="true", source="https:// relationship: develops_from UBERON:0008969 {source="PMID:19767574", source="Wikipedia:Dental_follicle"} ! dental follicle relationship: part_of UBERON:0001758 {source="BTO"} ! periodontium relationship: seeAlso FMA:76870 +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/d/dc/The_Periodontium.jpg" xsd:anyURI property_value: external_definition "The collagen fibers, running from the cementum to the alveolar bone, that suspend a tooth in its socket; they include apical, oblique, horizontal, and alveolar crest fibers, indicating that the orientation of the fibers varies at different levels[http://www.drugs.com/dict/desmodentium.html]." xsd:string {source="http://www.drugs.com/dict/desmodentium.html"} property_value: external_definition "The fibrous connective tissue that surrounds the root of a tooth, separating it from and attaching it to the alveolar bone. It extends from the base of the gingival mucosa to the fundus of the bony socket, and its main function is to hold the tooth in its socket[BTO]. It consist of cells, extracellular compartment of fibers. The cells are fibroblast, epithelial, undifferentiated mesenchymal cells, bone and cementum cells. The extracellular compartment consists of collagen fibers bundles embedded in ground substance. The PDL substance has been estimated to be 70% water and is thought to have a significant effect on the tooth's ability to withstand stress loads[WP][BTO:0001020, Wikipedia:Periodontal_fiber, https://github.com/obophenotype/uberon/issues/21]." xsd:string {source="Wikipedia:Periodontal_fiber"} property_value: external_ontology_notes "FMA treats periodontium and periodontal ligament as the same; it has a separate class desmodentium, which we place here even though it is classified as fetal in FMA" xsd:string {external_ontology="FMA"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan [Term] id: UBERON:0008267 @@ -288893,7 +289705,7 @@ id: UBERON:0008269 name: nacre def: "An organic-inorganic composite material produced by some mollusks as an inner shell layer; it is also what makes up pearls. It is very strong, resilient, and iridescent. Nacre is found in some ancient lineages of bivalve gastropod and cephalopod. The inner layer in the great majority of mollusk shells is porcellaneous, not nacreous, frequently resulting in a non-iridescent shine or less commonly in non-nacreous iridescence such as flame structure (e.g. conch pearl). Pearls and the inside layer of pearl oyster and freshwater pearl mussel shells are made of nacre. Many other families of mollusk also have a nacreous inner shell layer, including marine gastropods such as the Haliotidae, the Trochidae and the Turbinidae. Nacre is composed of hexagonal platelets of aragonite (a form of calcium carbonate) 10-20 µm wide and 0.5 µm thick arranged in a continuous parallel lamina. These layers are separated by sheets of organic matrix composed of elastic biopolymers (such as chitin, lustrin and silk-like proteins)[WP]." [Wikipedia:Nacre] synonym: "mother of pearl" EXACT [Wikipedia:Nacre] -xref: MESH:D060734 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D060734 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: Wikipedia:Nacre is_a: UBERON:0000463 ! organism substance is_a: UBERON:0004755 ! skeletal tissue @@ -288939,7 +289751,7 @@ synonym: "dorsal armor" RELATED [] synonym: "dorsal shell" RELATED [] synonym: "upper shell" RELATED [] xref: BTO:0001701 -xref: MESH:D060105 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D060105 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: SCTID:33620004 xref: Wikipedia:Carapace#Turtles_and_tortoises is_a: UBERON:0000075 ! subdivision of skeletal system @@ -290538,6 +291350,8 @@ relationship: part_of UBERON:0001737 {source="FMA"} ! larynx relationship: part_of UBERON:0008576 {source="FEED:rd", source="Wikipedia"} ! thyro-arytenoid relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/64/Musculusthyreoarytenoideus.png" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb" xsd:anyURI property_value: external_ontology_notes "in FMA this is not placed under thyro-arytenoid but almost all sources consider this to be the case (confirmed with FEED:rd)" xsd:string {external_ontology="FMA"} [Term] @@ -291142,10 +291956,18 @@ is_a: UBERON:0004885 ! hilum intersection_of: UBERON:0004885 ! hilum intersection_of: part_of UBERON:0002113 ! kidney relationship: part_of UBERON:0002113 ! kidney -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.2/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.2/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb" xsd:anyURI [Term] id: UBERON:0008772 @@ -291644,6 +292466,7 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/4a/Gr id: UBERON:0008810 name: nasopalatine nerve def: "A branch of that maxillary nerve that innervates the mucous membrane of the hard palate." [http://medical-dictionary.thefreedictionary.com/nasopalatine+nerve, UBERON:cjm] +subset: human_reference_atlas synonym: "naso-palatine nerve" RELATED [Wikipedia:Nasopalatine_nerve] synonym: "nasopalatine" RELATED [Wikipedia:Nasopalatine_nerve] synonym: "nasopalatine nerves" RELATED [Wikipedia:Nasopalatine_nerve] @@ -291659,6 +292482,7 @@ intersection_of: innervates UBERON:0005046 ! mucosa of hard palate relationship: branching_part_of UBERON:0000377 ! maxillary nerve relationship: innervates UBERON:0005046 ! mucosa of hard palate relationship: part_of UBERON:0000377 ! maxillary nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray858.png" xsd:anyURI [Term] @@ -291671,7 +292495,7 @@ synonym: "aedeagus" NARROW SENSU [FBbt:00004850] synonym: "copulatory organ" RELATED [] synonym: "penis" NARROW [] xref: AAO:0010255 -xref: FBbt:00004850 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004850 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000091 xref: TAO:0002036 xref: TGMA:0000585 @@ -291760,7 +292584,7 @@ name: embryonic head def: "A head that is part of a embryo." [OBOL:automatic] subset: non_informative xref: CALOHA:TS-0246 -xref: FBbt:00000155 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000155 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:293011 is_a: UBERON:0000033 ! head intersection_of: UBERON:0000033 ! head @@ -291897,7 +292721,7 @@ synonym: "type II pneumocyte secretion" EXACT [] xref: EMAPA:36551 xref: FMA:62780 xref: MA:0002534 -xref: MESH:D011663 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D011663 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C13273 xref: UMLS:C0034085 {source="ncithesaurus:Lung_Surfactant"} xref: Wikipedia:Pulmonary_surfactant @@ -292732,8 +293556,12 @@ is_a: UBERON:0001874 ! putamen intersection_of: UBERON:0001874 ! putamen intersection_of: part_of UBERON:0002812 ! left cerebral hemisphere relationship: part_of UBERON:0002812 ! left cerebral hemisphere -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0008885 @@ -292745,8 +293573,12 @@ is_a: UBERON:0001874 ! putamen intersection_of: UBERON:0001874 ! putamen intersection_of: part_of UBERON:0002813 ! right cerebral hemisphere relationship: part_of UBERON:0002813 ! right cerebral hemisphere -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0008886 @@ -292960,7 +293792,7 @@ synonym: "lateral line organ" BROAD [ZFA:0000243] synonym: "neuromast organ" EXACT [PHENOSCAPE:wd] synonym: "neuromasts" EXACT OMO:0003004 [ZFA:0000243] xref: AAO:0001004 -xref: BTO:0006219 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006219 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EFO:0003513 xref: TAO:0000243 xref: ZFA:0000243 @@ -293244,8 +294076,8 @@ is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008922 ! sublaminar layer S1 union_of: UBERON:0008923 ! sublaminar layer S2 relationship: part_of UBERON:0001795 ! inner plexiform layer of retina -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0008928 @@ -293256,8 +294088,8 @@ is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008923 ! sublaminar layer S2 union_of: UBERON:0008924 ! sublaminar layer S3 relationship: part_of UBERON:0001795 ! inner plexiform layer of retina -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0008929 @@ -293268,8 +294100,8 @@ is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008925 ! sublaminar layer S4 union_of: UBERON:0008926 ! sublaminar layer S5 relationship: part_of UBERON:0001795 ! inner plexiform layer of retina -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0008930 @@ -293552,8 +294384,13 @@ intersection_of: UBERON:0008948 ! upper lobe of lung intersection_of: part_of UBERON:0002168 ! left lung relationship: never_in_taxon NCBITaxon:10088 {source="ISBN:0123813611"} ! Mus relationship: part_of UBERON:0002168 ! left lung -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb" xsd:anyURI [Term] id: UBERON:0008953 @@ -293578,8 +294415,13 @@ intersection_of: UBERON:0008949 ! lower lobe of lung intersection_of: part_of UBERON:0002168 ! left lung relationship: never_in_taxon NCBITaxon:10088 {source="ISBN:0123813611"} ! Mus relationship: part_of UBERON:0002168 ! left lung -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb" xsd:anyURI [Term] id: UBERON:0008954 @@ -293760,7 +294602,7 @@ synonym: "tooth follicle" RELATED [BTO:0000337] xref: BTO:0000337 xref: EMAPA:35275 xref: MA:0003121 -xref: MESH:D003795 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D003795 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C34138 xref: SCTID:110975002 xref: Wikipedia:Dental_follicle @@ -293811,7 +294653,7 @@ synonym: "true apocrine gland" EXACT [] xref: BTO:0001162 xref: EMAPA:35141 xref: MA:0003040 -xref: MESH:D001050 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D001050 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:361698000 xref: Wikipedia:Apocrine is_a: UBERON:0002365 ! exocrine gland @@ -294148,6 +294990,7 @@ relationship: part_of UBERON:0035549 ! vasculature of integument id: UBERON:0009009 name: carotid sinus nerve def: "A sensory branch of the glossopharyngeal nerve (CN IX) carrying signals from the baroceptors (blood pressure receptors) in the bifurcation of the carotid artery to the nucleus of the solitary tract (nucleus solitarius)." [http://medical-dictionary.thefreedictionary.com/carotid+sinus+nerve] +subset: human_reference_atlas synonym: "carotid branch of glossopharyngeal nerve" EXACT [FMA:53488] synonym: "Hering sinus nerve" EXACT [http://medical-dictionary.thefreedictionary.com/carotid+sinus+nerve] synonym: "ramus sinus carotici" EXACT OMO:0003011 [FMA:53488] @@ -294163,6 +295006,7 @@ relationship: branching_part_of UBERON:0001649 {source="FMA"} ! glossopharyngeal relationship: extends_fibers_into UBERON:0009050 ! nucleus of solitary tract relationship: has_part UBERON:0004019 ! baroreceptor relationship: part_of UBERON:0001649 ! glossopharyngeal nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0009010 @@ -294416,7 +295260,7 @@ synonym: "arteria circumflexa ilium profunda" RELATED OMO:0003011 [Wikipedia:Dee synonym: "deep iliac circumflex" RELATED [Wikipedia:Deep_circumflex_iliac_artery] synonym: "deep iliac circumflex artery" RELATED [Wikipedia:Deep_circumflex_iliac_artery] xref: FMA:20687 -xref: MESH:D007083 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D007083 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C32432 xref: SCTID:181353005 xref: UMLS:C0226405 {source="ncithesaurus:Deep_Circumflex_Iliac_Artery"} @@ -294602,7 +295446,7 @@ property_value: editor_note "merge with SOC? See https://github.com/obophenotype id: UBERON:0009054 name: open circulatory system comment: The Open Circulatory System is a system in which fluid (called hemolymph) in a cavity called the hemocoel bathes the organs directly with oxygen and nutrients and there is no distinction between blood and interstitial fluid; this combined fluid is called hemolymph or haemolymph -xref: FBbt:00005057 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005057 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001009 {source="GO"} ! circulatory system relationship: never_in_taxon NCBITaxon:33511 ! Deuterostomia @@ -294867,7 +295711,7 @@ synonym: "pregnant adult stage" RELATED [BTO:0004733] synonym: "pregnant organism" RELATED [] synonym: "pregnant stage" RELATED [BTO:0004733] xref: BTO:0004733 -xref: IDOMAL:0000443 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: IDOMAL:0000443 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} is_a: UBERON:0007023 ! adult organism intersection_of: UBERON:0007023 ! adult organism intersection_of: has_part UBERON:0000922 ! embryo @@ -295129,8 +295973,9 @@ id: UBERON:0009127 name: epibranchial ganglion def: "Cranial ganglion which develops from an epibranchial placode." [PMID:20133851, ZFIN:curator] comment: Epibranchial ganglia orchestrate the development of the cranial neurogenic crest +subset: human_reference_atlas synonym: "epibranchial ganglia" EXACT OMO:0003004 [ZFA:0001555] -xref: BTO:0006250 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006250 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: TAO:0001555 xref: ZFA:0001555 is_a: UBERON:0001714 {source="ZFA"} ! cranial ganglion @@ -295138,6 +295983,7 @@ is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0001714 ! cranial ganglion intersection_of: develops_from UBERON:0003078 ! epibranchial placode relationship: develops_from UBERON:0003078 {source="NCBIBook:NBK53175"} ! epibranchial placode +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0009128 @@ -296491,7 +297337,7 @@ relationship: part_of UBERON:0006241 ! future spinal cord id: UBERON:0009571 name: ventral midline def: "In protostomes (such as insects, snails and worms) as well as deuterostomes (vertebrates), the midline is an embryonic region that functions in patterning of the adjacent nervous tissue. The ventral midline in insects is a cell population extending along the ventral surface of the embryo and is the region from which cells detach to form the ventrally located nerve cords. In vertebrates, the midline is originally located dorsally. During development, it folds inwards and becomes the ventral part of the dorsally located neural tube and is then called the ventral midline, or floor plate." [GOC:bf, GOC:go_curators, PMID:12075342] -xref: FBbt:00000093 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000093 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002050 {source="FMA"} ! embryonic structure relationship: only_in_taxon NCBITaxon:33213 ! Bilateria relationship: part_of UBERON:0001016 ! nervous system @@ -297020,6 +297866,7 @@ relationship: part_of UBERON:0006173 {is_inferred="true", source="https://github id: UBERON:0009623 name: spinal nerve root def: "The paired bundles of nerve fibers entering and leaving the spinal cord at each segment. The dorsal and ventral nerve roots join to form the mixed segmental spinal nerves. The dorsal roots are generally afferent, formed by the central projections of the spinal (dorsal root) ganglia sensory cells, and the ventral roots efferent, comprising the axons of spinal motor and autonomic preganglionic neurons. There are, however, some exceptions to this afferent/efferent rule." [MESH:A08.800.800.720.725] +subset: human_reference_atlas synonym: "root of spinal nerve" EXACT [FMA:14060] synonym: "spinal neural root" EXACT [FMA:14060] synonym: "spinal root" EXACT [BTO:0000883] @@ -297039,6 +297886,7 @@ relationship: contributes_to_morphology_of UBERON:0001780 ! spinal nerve relationship: contributes_to_morphology_of UBERON:0002240 ! spinal cord relationship: extends_fibers_into UBERON:0001780 ! spinal nerve relationship: extends_fibers_into UBERON:0002240 ! spinal cord +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: external_ontology_notes "ZFA has part_of to spinal cord but this causes spatial disjointness violations (CNS/PNS)" xsd:string {external_ontology="ZFA"} property_value: seeAlso "https://github.com/obophenotype/uberon/issues/2644" xsd:string @@ -297046,6 +297894,7 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/2644" xsd id: UBERON:0009624 name: lumbar nerve def: "The lumbar nerves are the five spinal nerves emerging from the lumbar vertebrae. They are divided into posterior and anterior divisions." [Wikipedia:Lumbar_nerves] +subset: human_reference_atlas synonym: "lumbar spinal nerve" EXACT [FMA:5861] synonym: "nervi lumbales" RELATED OMO:0003011 [Wikipedia:Lumbar_nerves] synonym: "nervus lumbalis" EXACT OMO:0003011 [FMA:5861, FMA:TA] @@ -297059,12 +297908,14 @@ is_a: UBERON:0001780 ! spinal nerve intersection_of: UBERON:0001780 ! spinal nerve intersection_of: extends_fibers_into UBERON:0002792 ! lumbar spinal cord relationship: extends_fibers_into UBERON:0002792 ! lumbar spinal cord +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray802.png" xsd:anyURI [Term] id: UBERON:0009625 name: sacral nerve def: "The five sacral nerves emerge from the sacrum. Although the vertebral components of the sacrum are fused into a single bone, the sacral vertebrae are still used to number the sacral nerves. Posteriorly, they emerge from the posterior sacral foramina, and form the posterior branches of sacral nerves. Anteriorly, they emerge from the anterior sacral foramina, and contribute to the sacral plexus (S1-S4) and coccygeal plexus." [Wikipedia:Sacral_nerves] +subset: human_reference_atlas synonym: "nervi sacrales" RELATED OMO:0003011 [Wikipedia:Sacral_nerves] synonym: "nervus sacralis" EXACT OMO:0003011 [FMA:5862, FMA:TA] synonym: "sacral spinal nerve" EXACT [FMA:5862] @@ -297078,6 +297929,7 @@ is_a: UBERON:0001780 ! spinal nerve intersection_of: UBERON:0001780 ! spinal nerve intersection_of: extends_fibers_into UBERON:0005843 ! sacral spinal cord relationship: extends_fibers_into UBERON:0005843 ! sacral spinal cord +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray802.png" xsd:anyURI [Term] @@ -297662,6 +298514,7 @@ property_value: homology_notes "Cranial nerves XI and XII evolved in the common id: UBERON:0009675 name: chorda tympani branch of facial nerve def: "The chorda tympani is a nerve that branches from the facial nerve (cranial nerve VII) inside the facial canal, just before the facial nerve exits the skull via the stylomastoid foramen. Chorda tympani is a branch of the facial nerve (the seventh cranial nerve) that serves the taste buds in the front of the tongue, runs through the middle ear, and carries taste messages to the brain. The chorda tympani is part of one of three cranial nerves that are involved in taste. The taste system involves a complicated feedback loop, with each nerve acting to inhibit the signals of other nerves. The chorda tympani appears to exert a particularly strong inhibitory influence on other taste nerves, as well as on pain fibers in the tongue. When the chorda tympani is damaged, its inhibitory function is disrupted, leading to less inhibited activity in the other nerves." [Wikipedia:Chorda_tympani] +subset: human_reference_atlas synonym: "chorda tympani" EXACT [FMA:53228] synonym: "chorda tympani nerve" RELATED [Wikipedia:Chorda_tympani] synonym: "corda tympani nerve" RELATED [Wikipedia:Chorda_tympani] @@ -297683,6 +298536,7 @@ is_a: UBERON:0001785 ! cranial nerve relationship: branching_part_of UBERON:0001647 {source="EHDAA2"} ! facial nerve relationship: innervates UBERON:0001727 ! taste bud relationship: part_of UBERON:0001647 ! facial nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0009676 @@ -297766,8 +298620,12 @@ xref: Wikipedia:Middle_cardiac_vein is_a: UBERON:0004148 {source="FMA"} ! cardiac vein relationship: connected_to UBERON:0005438 ! coronary sinus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI [Term] id: UBERON:0009688 @@ -298038,8 +298896,8 @@ xref: CP:0001040 is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008924 ! sublaminar layer S3 union_of: UBERON:0008925 ! sublaminar layer S4 -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0009732 @@ -298050,8 +298908,8 @@ is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008922 ! sublaminar layer S1 union_of: UBERON:0008923 ! sublaminar layer S2 union_of: UBERON:0008926 ! sublaminar layer S5 -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0009733 @@ -298062,8 +298920,8 @@ is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008922 ! sublaminar layer S1 union_of: UBERON:0008923 ! sublaminar layer S2 union_of: UBERON:0008924 ! sublaminar layer S3 -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0009734 @@ -298074,8 +298932,8 @@ is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008923 ! sublaminar layer S2 union_of: UBERON:0008924 ! sublaminar layer S3 union_of: UBERON:0008925 ! sublaminar layer S4 -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0009735 @@ -298086,8 +298944,8 @@ is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008922 ! sublaminar layer S1 union_of: UBERON:0008924 ! sublaminar layer S3 union_of: UBERON:0008925 ! sublaminar layer S4 -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0009736 @@ -298098,8 +298956,8 @@ is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008924 ! sublaminar layer S3 union_of: UBERON:0008925 ! sublaminar layer S4 union_of: UBERON:0008926 ! sublaminar layer S5 -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0009737 @@ -298111,8 +298969,8 @@ union_of: UBERON:0008922 ! sublaminar layer S1 union_of: UBERON:0008923 ! sublaminar layer S2 union_of: UBERON:0008924 ! sublaminar layer S3 union_of: UBERON:0008925 ! sublaminar layer S4 -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0009738 @@ -298126,8 +298984,8 @@ intersection_of: overlaps UBERON:0008923 ! sublaminar layer S2 relationship: overlaps UBERON:0008922 ! sublaminar layer S1 relationship: overlaps UBERON:0008923 ! sublaminar layer S2 relationship: part_of UBERON:0008927 ! sublaminar layers S1 or S2 -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0009739 @@ -298141,8 +298999,8 @@ intersection_of: overlaps UBERON:0008925 ! sublaminar layer S4 relationship: overlaps UBERON:0008924 ! sublaminar layer S3 relationship: overlaps UBERON:0008925 ! sublaminar layer S4 relationship: part_of UBERON:0009731 ! sublaminar layers S3 or S4 -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0009740 @@ -298315,7 +299173,7 @@ property_value: location_notes "Lipid-rich, collagen fiber-laced blubber compris id: UBERON:0009755 name: spermaceti def: "Wax present in the head cavities of the sperm whale." [Wikipedia:Spermaceti] -xref: MESH:C009301 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:C009301 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: Wikipedia:Spermaceti is_a: UBERON:0000463 ! organism substance relationship: only_in_taxon NCBITaxon:9753 ! Physeter @@ -298338,7 +299196,7 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3b/Sp id: UBERON:0009757 name: ambergris def: "A biliary secretion of the intestines of the sperm whale." [Wikipedia:Ambergris] -xref: MESH:D018648 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D018648 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: Wikipedia:Ambergris is_a: UBERON:0000463 ! organism substance relationship: only_in_taxon NCBITaxon:9753 ! Physeter @@ -298768,8 +299626,8 @@ intersection_of: overlaps UBERON:0008926 ! sublaminar layer S5 relationship: overlaps UBERON:0008925 ! sublaminar layer S4 relationship: overlaps UBERON:0008926 ! sublaminar layer S5 relationship: part_of UBERON:0008929 ! sublaminar layers S4 or S5 -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0009852 @@ -298782,8 +299640,8 @@ intersection_of: overlaps UBERON:0008924 ! sublaminar layer S3 relationship: overlaps UBERON:0008923 ! sublaminar layer S2 relationship: overlaps UBERON:0008924 ! sublaminar layer S3 relationship: part_of UBERON:0008928 ! sublaminar layers S2 or S3 -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0009853 @@ -298809,7 +299667,8 @@ relationship: continuous_with UBERON:0003889 ! fallopian tube relationship: continuous_with UBERON:0013759 ! internal cervical os relationship: part_of UBERON:0000995 {source="FMA"} ! uterus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Uterus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.0/assets/VH_F_Uterus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.1/assets/VH_F_Uterus.glb" xsd:anyURI [Term] id: UBERON:0009854 @@ -298817,7 +299676,7 @@ name: digestive tract diverticulum def: "Branch or outpocketing of the digestive tract." [https://orcid.org/0000-0002-6601-2165] synonym: "diverticulum of gut" RELATED [FBbt:00100316] synonym: "intestinal pouch" RELATED [] -xref: FBbt:00100316 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00100316 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0004921 ! subdivision of digestive tract is_a: UBERON:0009856 ! sac intersection_of: UBERON:0009856 ! sac @@ -299106,12 +299965,12 @@ relationship: part_of UBERON:0001445 ! skeleton of pes relationship: part_of UBERON:0004454 ! tarsal region relationship: proximally_connected_to UBERON:0010720 ! hindlimb zeugopod skeleton relationship: skeleton_of UBERON:0004454 ! tarsal region +property_value: dc:contributor https://github.com/alex-dececchi +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: external_definition "Segment of the leg corresponding to the tarsus. It consists of several elements that articulate with the tibia and fibula at one end and the metatarsals at the other end.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000220", ontology="AAO", source="AAO:LAP"} property_value: external_ontology_notes "we assume MA:tarsus belongs here, as there is a distinct class MA:ankle, with the tarsal bone being part of the former. XAO:tarsus is part of the hindlimb skeleton. FMA set-of class lacks definition but we assume this to be equivalent." xsd:string {external_ontology="MA"} property_value: homology_notes "The three main outgroup taxa of tetrapods, panderichthyids, osteolepiforms, and rhizodontids, have endoskeletal elements corresponding to the stylo- and zeugopodial elements in a tetrapod limb. In addition, there are elements that share the position and possibly the developmental derivation of the ulnare and the intermedium. From these observations, most authors have concluded that the stylo- and zeugopodial elements as well as the proximal mesopodial elements have counterparts in the fins of tetrapod ancestors, but there are no indications of wrist or ankle joints.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001160", ontology="VHOG", source="DOI:10.1002/jez.1100 Wagner GP, Chiu C, The tetrapod limb: A hypothesis on its origin. J Exp Zool (Mol Dev Evol) (2001)", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/alex-dececchi -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly property_value: taxon_notes "Not always associated with digits, in sarcopterygians the ulnare is present without true digits being formed, though their homologous radial elements are present" xsd:string {source="PHENOSCAPE:ad"} [Term] @@ -299145,12 +300004,12 @@ relationship: part_of UBERON:0001442 ! skeleton of manus relationship: part_of UBERON:0004452 ! carpal region relationship: proximally_connected_to UBERON:0010703 ! forelimb zeugopod skeleton relationship: skeleton_of UBERON:0004452 ! carpal region +property_value: dc:contributor https://github.com/alex-dececchi +property_value: dc:contributor https://github.com/cmungall property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/58/Carpus.svg" xsd:anyURI property_value: external_definition "Segment of the forearm corresponding to the carpus. It consists of several elements that articulate with the radius and ulna at one end and the metacarpals at the other end.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000201", ontology="AAO", source="AAO:LAP"} property_value: external_ontology_notes "we assume MA:carpus belongs here, as there is a distinct class MA:wrist, with the carpal bone being part of the former. XAO:carpus is part of the forelimb skeleton. FMA set-of class lacks definition but we assume this to be equivalent." xsd:string {external_ontology="MA"} property_value: homology_notes "The three main outgroup taxa of tetrapods, panderichthyids, osteolepiforms, and rhizodontids, have endoskeletal elements corresponding to the stylo- and zeugopodial elements in a tetrapod limb. In addition, there are elements that share the position and possibly the developmental derivation of the ulnare and the intermedium. From these observations, most authors have concluded that the stylo- and zeugopodial elements as well as the proximal mesopodial elements have counterparts in the fins of tetrapod ancestors, but there are no indications of wrist or ankle joints.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001161", ontology="VHOG", source="DOI:10.1002/jez.1100 Wagner GP, Chiu C, The tetrapod limb: A hypothesis on its origin. J Exp Zool (Mol Dev Evol) (2001)", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/alex-dececchi -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: taxon_notes "Not always associated with digits, in sarcopterygians the ulnare is present without true digits being formed, though their homologous radial elements are present[PHENOSCAPE:ad]." xsd:string {source="Wikipedia:Carpus#Evolutionary_variations"} property_value: taxon_notes "The structure of the carpus varies widely between different groups of tetrapods, even among those that retain the full set of five digits. In primitive fossil amphibians, such as Eryops, the carpus consists of three rows of bones; a proximal row of three carpals, a second row of four bones, and a distal row of five bones. The proximal carpals are referred to as the radiale, intermediale, and ulnare, after their proximal articulations, and are homologous with the scaphoid, lunate, and triquetal bones respectively. The remaining bones are simply numbered, as the first to fourth centralia (singular: centrale), and the first to fifth distal carpals. Primitively, each of the distal bones appears to have articulated with a single metacarpal. However, the vast majority of later vertebrates, including modern amphibians, have undergone varying degrees of loss and fusion of these primitive bones, resulting in a smaller number of carpals. Almost all mammals and reptiles, for example, have lost the fifth distal carpal, and have only a single centrale - and even this is missing in humans. The pisiform bone is somewhat unusual, in that it first appears in primitive reptiles, and is never found in amphibians. Because many tetrapods have less than five digits on the forelimb, even greater degrees of fusion are common, and a huge array of different possible combinations are found. The wing of a modern bird, for example, has only two remaining carpals; the radiale (the scaphoid of mammals) and a bone formed from the fusion of four of the distal carpals. In some macropods, the scaphoid and lunar bones are fused into the scaphollunar bone" xsd:string @@ -299610,7 +300469,7 @@ name: main olfactory bulb def: "The main olfactory bulb has a multi-layered cellular architecture. In order from surface to the center the layers are: Glomerular layer, External plexiform layer, Mitral cell layer, Internal plexiform layer, Granule cell layer[WP]." [Wikipedia:Olfactory_bulb#Main_olfactory_bulb] xref: BAMS:MOB xref: MBA:507 -xref: MESH:D009830 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D009830 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: Wikipedia:Olfactory_bulb#Main_olfactory_bulb is_a: UBERON:0002616 ! regional part of brain relationship: mutually_spatially_disjoint_with UBERON:0002266 {source="ABA"} ! anterior olfactory nucleus @@ -300252,7 +301111,7 @@ subset: common_anatomy subset: upper_level synonym: "multicellular structure" EXACT [FBbt:00100313] xref: CARO:0010000 -xref: FBbt:00100313 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00100313 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000061 ! anatomical structure intersection_of: UBERON:0000061 ! anatomical structure intersection_of: has_quality PATO:0001993 ! multicellular @@ -300269,7 +301128,7 @@ def: "A small cluster of cells of various types which form a discrete structure, comment: Examples include arthropod sensilla. subset: upper_level xref: CARO:0010001 -xref: FBbt:00007229 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007229 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000062 {source="CARO"} ! organ is_a: UBERON:0034922 {source="CARO"} ! cell cluster disjoint_from: UBERON:0011216 {source="FBbt"} ! organ system subdivision @@ -302520,8 +303379,12 @@ is_a: UBERON:0001771 ! pupil intersection_of: UBERON:0001771 ! pupil intersection_of: part_of UBERON:0004548 ! left eye relationship: part_of UBERON:0004548 ! left eye -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-l.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.0/assets/VH_F_Eye_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.1/assets/VH_F_Eye_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.2/assets/3d-vh-f-eye-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.0/assets/VH_M_Eye_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.1/assets/VH_M_Eye_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.2/assets/3d-vh-m-eye-l.glb" xsd:anyURI [Term] id: UBERON:0010224 @@ -302534,8 +303397,12 @@ is_a: UBERON:0001771 ! pupil intersection_of: UBERON:0001771 ! pupil intersection_of: part_of UBERON:0004549 ! right eye relationship: part_of UBERON:0004549 ! right eye -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-r.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.0/assets/VH_F_Eye_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.1/assets/VH_F_Eye_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.2/assets/3d-vh-f-eye-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.0/assets/VH_M_Eye_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.1/assets/VH_M_Eye_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.2/assets/3d-vh-m-eye-r.glb" xsd:anyURI [Term] id: UBERON:0010225 @@ -303099,7 +303966,7 @@ id: UBERON:0010264 name: hepatopancreas def: "An organ of the digestive tract of arthropods and molluscs. It provides the functions which in mammals are provided separately by the liver and pancreas, including the production of digestive enzymes, and absorption of digested food." [Wikipedia:Hepatopancreas] xref: BTO:0000597 -xref: MESH:D043143 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D043143 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: Wikipedia:Hepatopancreas is_a: UBERON:0003408 ! gland of digestive tract is_a: UBERON:0006925 {source="BTO"} ! digestive system gland @@ -303498,7 +304365,7 @@ subset: efo_slim synonym: "amnion-serosa" RELATED [BTO:0004800] xref: BTO:0004800 xref: EFO:0000250 -xref: FBbt:00000095 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000095 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0010303 {source="DOI:10.1073/pnas.0709145105"} ! extraembryonic epithelium relationship: only_in_taxon NCBITaxon:6656 {notes="Cyclorrhapha", source="DOI:10.1073/pnas.0709145105"} ! Arthropoda property_value: editor_note "May be obsoleted once added to insect ontology. Coordinate with cell type in CL" xsd:string @@ -304110,7 +304977,7 @@ def: "Nonsynovial joint in which the articulating bones are connected by bone. E synonym: "bony union" EXACT [FMA:7499] synonym: "junctura ossea" EXACT OMO:0003011 [FMA:TA] xref: FMA:7499 -xref: MESH:D013580 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D013580 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:1216008 xref: ZFA:0005610 is_a: UBERON:0011134 {source="FMA"} ! nonsynovial joint @@ -304310,8 +305177,11 @@ relationship: develops_from UBERON:0003924 {source="Wikipedia"} ! ventral pancre relationship: part_of UBERON:0001069 {source="FMA"} ! head of pancreas relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/fe/Illu_pancreas_duodenum.jpg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pancreas.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.0/assets/VH_F_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.1/assets/VH_F_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.0/assets/VH_M_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.1/assets/VH_M_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.2/assets/3d-vh-m-pancreas.glb" xsd:anyURI [Term] id: UBERON:0010375 @@ -304574,8 +305444,8 @@ intersection_of: UBERON:0010422 ! primary nodular lymphoid tissue intersection_of: part_of UBERON:0000029 ! lymph node relationship: part_of UBERON:0000029 ! lymph node relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0010396 @@ -304591,8 +305461,14 @@ is_a: UBERON:0001473 ! lymphatic vessel relationship: contributes_to_morphology_of UBERON:0000029 ! lymph node relationship: part_of UBERON:0000029 ! lymph node relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-left/v1.0/assets/NIH_F_Lymph_Node_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-right/v1.0/assets/NIH_F_Lymph_Node_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.2/assets/NIH_F_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.2/assets/NIH_M_Lymph_Node.glb" xsd:anyURI [Term] id: UBERON:0010397 @@ -304606,8 +305482,14 @@ xref: MA:0000749 xref: Wikipedia:Efferent_lymph_vessel is_a: UBERON:0001473 ! lymphatic vessel relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-left/v1.0/assets/NIH_F_Lymph_Node_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-right/v1.0/assets/NIH_F_Lymph_Node_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.2/assets/NIH_F_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.2/assets/NIH_M_Lymph_Node.glb" xsd:anyURI [Term] id: UBERON:0010398 @@ -304916,8 +305798,14 @@ intersection_of: UBERON:0010393 ! T cell domain intersection_of: part_of UBERON:0000029 ! lymph node relationship: part_of UBERON:0000029 ! lymph node relationship: part_of UBERON:0002006 {source="MP"} ! cortex of lymph node -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-left/v1.0/assets/NIH_F_Lymph_Node_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-right/v1.0/assets/NIH_F_Lymph_Node_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.2/assets/NIH_F_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.2/assets/NIH_M_Lymph_Node.glb" xsd:anyURI [Term] id: UBERON:0010418 @@ -304973,8 +305861,8 @@ relationship: part_of UBERON:0000029 ! lymph node relationship: part_of UBERON:0010753 {source="MA"} ! lymph node secondary follicle relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: surrounds UBERON:0009039 ! lymph node germinal center -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0010421 @@ -305002,8 +305890,8 @@ relationship: part_of UBERON:0002106 ! spleen relationship: part_of UBERON:0004042 {source="CL:tm"} ! spleen secondary B follicle relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: surrounds UBERON:0005196 ! spleen germinal center -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0010422 @@ -305109,10 +305997,18 @@ is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001775 ! ciliary body property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b2/Gray875.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-l.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-r.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-l.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.0/assets/VH_F_Eye_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.1/assets/VH_F_Eye_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.2/assets/3d-vh-f-eye-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.0/assets/VH_F_Eye_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.1/assets/VH_F_Eye_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.2/assets/3d-vh-f-eye-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.0/assets/VH_M_Eye_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.1/assets/VH_M_Eye_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.2/assets/3d-vh-m-eye-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.0/assets/VH_M_Eye_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.1/assets/VH_M_Eye_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.2/assets/3d-vh-m-eye-r.glb" xsd:anyURI [Term] id: UBERON:0010428 @@ -307027,7 +307923,7 @@ relationship: part_of UBERON:0002387 ! pes id: UBERON:0010725 name: accessory navicular bone def: "An accessory bone of the pes that occasionally develops abnormally in front of the ankle towards the inside of the pes. This bone may be present in approximately 2.5% of the general population and is usually asymptomatic." [Wikipedia:Accessory_navicular_bone] -xref: MESH:C536002 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:C536002 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:118496000 xref: Wikipedia:Accessory_navicular_bone is_a: UBERON:0005899 ! pes bone @@ -307295,9 +308191,9 @@ xref: Wikipedia:Wing_of_ilium is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ relationship: part_of UBERON:0001273 ! ilium +property_value: dc:contributor https://github.com/alex-dececchi +property_value: dc:contributor https://github.com/cmungall property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a1/Gray235.png" xsd:anyURI -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/alex-dececchi -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: taxon_notes "Often dorsally expanded in amniotes" xsd:string {source="ad"} [Term] @@ -307326,8 +308222,14 @@ intersection_of: UBERON:0000444 ! lymphoid follicle intersection_of: part_of UBERON:0000029 ! lymph node relationship: part_of UBERON:0000029 ! lymph node relationship: part_of UBERON:0002006 {notes="issues/7", source="MP-def"} ! cortex of lymph node -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-left/v1.0/assets/NIH_F_Lymph_Node_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-right/v1.0/assets/NIH_F_Lymph_Node_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.2/assets/NIH_F_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.2/assets/NIH_M_Lymph_Node.glb" xsd:anyURI [Term] id: UBERON:0010749 @@ -307510,7 +308412,7 @@ def: "A major subdivision of an organism that divides an organism along an axis subset: upper_level synonym: "appendage segment" EXACT [FBbt:00007018] synonym: "appendicular segment" EXACT [] -xref: FBbt:00007018 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007018 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0000026 ! appendage @@ -308379,6 +309281,8 @@ xref: Wikipedia:Thyroepiglottic_muscle is_a: UBERON:0001568 {source="ncithesaurus"} ! muscle of larynx relationship: part_of UBERON:0008576 {source="FMA"} ! thyro-arytenoid property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/64/Musculusthyreoarytenoideus.png" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb" xsd:anyURI property_value: external_definition "Thexton, see notes from WG2.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} property_value: external_ontology_notes "not a distinct muscle in FMA" xsd:string {external_ontology="FMA"} @@ -308470,6 +309374,8 @@ relationship: has_muscle_origin UBERON:0002375 {source="dbpedia"} ! cricoid cart relationship: innervated_by UBERON:0003716 {source="dbpedia"} ! recurrent laryngeal nerve relationship: part_of UBERON:0001737 {source="FMA"} ! larynx property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/96/Gray959.png" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb" xsd:anyURI property_value: editor_note "candidate for obsoletion. See https://github.com/obophenotype/uberon/issues/530" xsd:string property_value: seeAlso "https://github.com/obophenotype/uberon/issues/530" xsd:anyURI @@ -308874,6 +309780,8 @@ relationship: has_muscle_insertion UBERON:0001740 {notes="Arytenoid cartilage on relationship: has_muscle_origin UBERON:0001740 {notes="Arytenoid cartilage on one side", source="dbpedia"} ! arytenoid cartilage relationship: innervated_by UBERON:0003716 {notes="recurrent laryngeal branch of the vagus", source="dbpedia"} ! recurrent laryngeal nerve property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/52/Musculusarytenoideus.png" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb" xsd:anyURI property_value: editor_note "TODO - check child relationships" xsd:string [Term] @@ -309140,7 +310048,7 @@ def: "A cartilage element that is part of a splanchnocranium." [OBOL:automatic] subset: efo_slim synonym: "pharyngeal arch cartilages" EXACT OMO:0003004 [ZFA:0001460] synonym: "splanchnocranium cartilage" EXACT [ZFA:0001460] -xref: BTO:0006051 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006051 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EFO:0003689 xref: TAO:0001460 xref: ZFA:0001460 @@ -309519,9 +310427,9 @@ is_a: UBERON:0010912 {source="cjm"} ! subdivision of skeleton relationship: develops_from UBERON:0004362 ! pharyngeal arch 1 relationship: part_of UBERON:0003277 ! skeleton of upper jaw relationship: part_of UBERON:0008895 {source="VHOG"} ! splanchnocranium +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: homology_notes "Subsequent vertebrate evolution has also involved major alterations to the pharynx; perhaps the most notable occurred with the evolution of the gnathostomes. This involved substantial modifications to the most anterior pharyngeal segments, with the jaw forming from the first, anterior, pharyngeal segment, while the second formed its supporting apparatus, the hyoid.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000511", ontology="VHOG", source="DOI:10.1046/j.1469-7580.2001.19910133.x Graham A. The development and evolution of the pharyngeal arches. J Anat (2001)", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly [Term] id: UBERON:0011087 @@ -309627,6 +310535,7 @@ relationship: has_potential_to_develop_into UBERON:0002412 ! vertebra id: UBERON:0011096 name: lacrimal nerve def: "The lacrimal nerve is the smallest of the three branches of the ophthalmic division of the trigeminal nerve." [Wikipedia:Lacrimal_nerve] +subset: human_reference_atlas synonym: "nervus lacrimalis" EXACT OMO:0003011 [Wikipedia:Lacrimal_nerve] xref: FMA:52628 xref: NCIT:C32908 @@ -309639,6 +310548,7 @@ intersection_of: innervates UBERON:0001817 ! lacrimal gland relationship: branching_part_of UBERON:0000348 {source="FMA"} ! ophthalmic nerve relationship: innervates UBERON:0001817 ! lacrimal gland relationship: part_of UBERON:0000348 ! ophthalmic nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0011104 @@ -309788,7 +310698,7 @@ synonym: "proximal tibiofibular syndesmosis" RELATED [FMA:35184] synonym: "superior tibiofibular articulation" RELATED [Wikipedia:Superior_tibiofibular_joint] synonym: "tibiofibular joint" BROAD [Wikipedia:Superior_tibiofibular_joint] xref: FMA:35184 -xref: MESH:D007719 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D007719 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: SCTID:182208008 xref: Wikipedia:Superior_tibiofibular_joint is_a: UBERON:0011112 ! tibiofibular joint @@ -309833,7 +310743,7 @@ synonym: "carpometacarpal" BROAD [Wikipedia:Carpometacarpal_joint] synonym: "carpometacarpal articulation" RELATED [Wikipedia:Carpometacarpal_joint] synonym: "CMJ" BROAD [Wikipedia:Carpometacarpal_joint] xref: FMA:35287 -xref: MESH:D052737 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D052737 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32265 xref: SCTID:361842002 xref: UMLS:C0224620 {source="ncithesaurus:Carpometacarpal_Joint"} @@ -309971,7 +310881,7 @@ synonym: "intercarpal" RELATED [Wikipedia:Intercarpal_articulations] synonym: "intercarpal articulation" RELATED [Wikipedia:Intercarpal_articulations] synonym: "midcarpal articulation" RELATED [Wikipedia:Intercarpal_articulations] xref: FMA:35292 -xref: MESH:D050824 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D050824 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C32264 xref: SCTID:182176003 xref: UMLS:C1262468 {source="ncithesaurus:Carpal_Joint"} @@ -310055,7 +310965,7 @@ synonym: "post-cranial axial skeletal system" EXACT [] xref: FMA:302077 is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system relationship: develops_from UBERON:0003089 {source="cjm"} ! sclerotome -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/cmungall property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/docs/The-axial-skeleton" xsd:anyURI [Term] @@ -310469,7 +311379,7 @@ synonym: "femoropatellar joint" EXACT [] synonym: "patello femoral joint" EXACT [galen:PatelloFemoralJoint] xref: FMA:43574 xref: galen:PatelloFemoralJoint -xref: MESH:D057071 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D057071 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:182202009 is_a: UBERON:0003840 ! hindlimb joint is_a: UBERON:0011139 {source="FMA"} ! synovial limb joint @@ -310498,8 +311408,8 @@ is_a: UBERON:0002514 ! intramembranous bone is_a: UBERON:0003457 ! head bone is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0006813 {source="AAO"} ! nasal skeleton -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly [Term] id: UBERON:0011168 @@ -310847,8 +311757,9 @@ xref: Wikipedia:Ophthalmic_veins xref: XAO:0004169 is_a: UBERON:0009141 {source="EHDAA2-modified"} ! craniocervical region vein property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray572.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI [Term] id: UBERON:0011192 @@ -310888,6 +311799,7 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/0/02/Gr id: UBERON:0011194 name: ophthalmic plexus def: "An autonomic plexus, entering the orbit in company with the ophthalmic artery, derived from the internal carotid plexus." [http://www.encyclo.co.uk/define/ophthalmic%20plexus] +subset: human_reference_atlas synonym: "ophthalmic nerve plexus" EXACT [] synonym: "ophthalmic plexus" EXACT [MA:0002185] synonym: "opthalmic plexus" EXACT [] @@ -310898,6 +311810,7 @@ xref: MA:0002185 xref: NCIT:C53057 xref: UMLS:C1709326 {source="ncithesaurus:Ophthalmic_Plexus"} is_a: UBERON:0001810 {source="ncithesaurus"} ! nerve plexus +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0011195 @@ -310979,7 +311892,8 @@ is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001335 {source="FMA"} ! prostatic urethra property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray1153.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb" xsd:anyURI property_value: editor_note "add df relations. Check mesopnephric duct" xsd:string [Term] @@ -311151,6 +312065,7 @@ xref: BIRNLEX:1456 xref: DHBA:12888 xref: DMBA:17748 xref: FMA:6213 +xref: HBA:9337 xref: ZFA:0007011 is_a: UBERON:0002211 ! nerve root intersection_of: UBERON:0002211 ! nerve root @@ -311191,7 +312106,7 @@ def: "A subdivision of an anatomical system." [http://orcid.org/0000-0002-6601-2 subset: common_anatomy subset: human_reference_atlas subset: upper_level -xref: FBbt:00007330 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007330 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:67509 xref: SCTID:91690000 is_a: UBERON:0010000 {source="FBbt"} ! multicellular anatomical structure @@ -311453,10 +312368,10 @@ intersection_of: UBERON:0011248 ! procoracoid element intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue relationship: composed_primarily_of UBERON:0002481 ! bone tissue relationship: develops_from UBERON:0011247 ! procoracoid cartilage +property_value: dc:contributor https://github.com/alex-dececchi property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/7/79/P.gigas_forelimb.jpg" xsd:anyURI property_value: editor_note "VSAO sais that the procoracoid+coracoid are homologous to the teleost coracoid. Consider adding a separate class for posterior coracoid." xsd:string property_value: homology_notes "Kardong states that the procoracoid (or the anterior part of the procoracoid) is homologous to the coracoid, but this is controversial" xsd:string {is_about="UBERON:0004743", source="ISBN:0073040584"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/alex-dececchi property_value: seeAlso "https://github.com/obophenotype/uberon/issues/119" xsd:anyURI property_value: taxon_notes "In primitive synapsis 3 centers develop in the shoulder: the dorsal center gives rise to the scapula and the two ventral centers produce an anterior coracoid (procoracoid) and posterior coracoid (coracoid)" xsd:string @@ -311480,9 +312395,9 @@ xref: AAO:0000760 is_a: UBERON:0004765 ! skeletal element relationship: part_of UBERON:0007831 ! pectoral girdle skeleton property_value: axiom_lost_from_external_ontology "relationship loss: part_of zonal element (AAO:0000936)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000760", ontology="AAO"} +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: external_definition "Cartilaginous, paired structures located on the anterolateral portions of the zonal area of the pectoral girdle.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000760", ontology="AAO", source="AAO:LAP"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly [Term] id: UBERON:0011249 @@ -312342,6 +313257,7 @@ relationship: innervates UBERON:0006562 ! pharynx id: UBERON:0011326 name: superior laryngeal nerve def: "The superior laryngeal nerve is a branch of the vagus nerve. It arises from the middle of the ganglion nodosum and in its course receives a branch from the superior cervical ganglion of the sympathetic. It descends, by the side of the pharynx, behind the internal carotid artery, and divides into two branches: external laryngeal nerve internal laryngeal nerve A superior laryngeal nerve palsy changes the pitch of the voice and causes an inability to make explosive sounds. If no recovery is evident three months after the palsy initially presents, the damage is most likely to be permanent. A bilateral palsy presents as a tiring and hoarse voice." [Wikipedia:Superior_laryngeal_nerve] +subset: human_reference_atlas synonym: "nervus laryngealis superior" EXACT [FMA:6239] synonym: "nervus laryngeus superior" EXACT OMO:0003011 [Wikipedia:Superior_laryngeal_nerve] synonym: "superior laryngeal branch of inferior vagal ganglion" EXACT [FMA:6239] @@ -312356,6 +313272,7 @@ relationship: branching_part_of UBERON:0001759 {source="FMA"} ! vagus nerve relationship: develops_from UBERON:0003115 {source="Wikipedia"} ! pharyngeal arch 4 relationship: innervates UBERON:0001737 ! larynx relationship: part_of UBERON:0001759 ! vagus nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0011327 @@ -312878,7 +313795,7 @@ synonym: "nervus pudendales" EXACT OMO:0003011 [doi:10.1002/ca.23705] synonym: "pudenal nerve" RELATED [Wikipedia:Pudendal_nerve] synonym: "pudendal" BROAD [Wikipedia:Pudendal_nerve] xref: FMA:19037 -xref: MESH:D060525 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D060525 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:181057000 xref: Wikipedia:Pudendal_nerve is_a: UBERON:0003444 ! pelvis nerve @@ -315459,8 +316376,8 @@ is_a: UBERON:0005813 {source="FMA"} ! tubercle is_a: UBERON:0013703 ! integumentary projection relationship: overlaps UBERON:0011827 ! areolar gland relationship: part_of UBERON:0002030 ! nipple -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-l.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-left/v1.0/assets/3d-vh-f-mammary-gland-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-right/v1.0/assets/3d-vh-f-mammary-gland-r.glb" xsd:anyURI [Term] id: UBERON:0011830 @@ -315916,7 +316833,7 @@ id: UBERON:0011895 name: endomysium def: "A layer of connective tissue that ensheaths a muscle fiber and is composed mostly from reticular fibers. It also contains capillaries, nerves and lymphatics. The term cardiac skeleton is sometimes considered synonymous with endomysium, but sometimes it refers to the combination of the endomysium and perimysium." [Wikipedia:Endomysium] synonym: "fascia of muscle fiber" EXACT [FMA:9729] -xref: BTO:0006241 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006241 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: FMA:9729 xref: NCIT:C32517 xref: SCTID:91739007 @@ -316031,7 +316948,7 @@ def: "Plantaris is a vestigial structure and one of the superficial muscles of t subset: efo_slim synonym: "musculus plantaris" EXACT OMO:0003011 [] synonym: "plantaris" EXACT [FMA:22543] -xref: BTO:0006312 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006312 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EFO:0001979 xref: EMAPA:36254 xref: FMA:22543 @@ -316198,6 +317115,7 @@ relationship: part_of UBERON:0002499 ! cochlear labyrinth id: UBERON:0011924 name: postganglionic autonomic fiber def: "Nerve fibers which project from cell bodies of autonomic ganglia to synapses on target organs." [MESH:A08.663.542.100, Wikipedia:Postganglionic_nerve_fibers] +subset: human_reference_atlas synonym: "postganglionic autonomic fibre" RELATED [] synonym: "postganglionic nerve fiber" EXACT [FMA:5924] xref: FMA:5924 @@ -316212,11 +317130,13 @@ intersection_of: extends_fibers_into UBERON:0012453 ! nerve ending relationship: extends_fibers_into UBERON:0001805 ! autonomic ganglion relationship: extends_fibers_into UBERON:0012453 ! nerve ending relationship: part_of UBERON:0034728 ! autonomic nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0011925 name: preganglionic autonomic fiber def: "Nerve fibers which project from the central nervous system to autonomic ganglia. In the sympathetic division most preganglionic fibers originate with neurons in the intermediolateral column of the spinal cord, exit via ventral roots from upper thoracic through lower lumbar segments, and project to the paravertebral ganglia; there they either terminate in synapses or continue through the splanchnic nerves to the prevertebral ganglia. In the parasympathetic division the fibers originate in neurons of the brain stem and sacral spinal cord. In both divisions the principal transmitter is acetylcholine but peptide cotransmitters may also be released." [MESH:A08.663.542.122, Wikipedia:Preganglionic_nerve_fibers] +subset: human_reference_atlas synonym: "preganglionic autonomic fibre" RELATED [] synonym: "preganglionic nerve fiber" EXACT [FMA:5923] xref: FMA:5923 @@ -316230,11 +317150,13 @@ intersection_of: extends_fibers_into UBERON:0001805 ! autonomic ganglion relationship: extends_fibers_into UBERON:0001017 ! central nervous system relationship: extends_fibers_into UBERON:0001805 ! autonomic ganglion relationship: part_of UBERON:0034728 ! autonomic nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0011926 name: postganglionic sympathetic fiber def: "A noradrenergic or adrenergic axonal fiber projecting from a sympathetic ganglion to an effector organ." [MP:0008312] +subset: human_reference_atlas synonym: "postganglionic sympathetic fiber" RELATED [MESH:A08.663.542.075.800] synonym: "sympathetic postganglionic fiber" RELATED [MP:0008312] xref: MESH:D017779 @@ -316249,6 +317171,7 @@ intersection_of: extends_fibers_into UBERON:0012453 ! nerve ending relationship: extends_fibers_into UBERON:0001806 ! sympathetic ganglion relationship: extends_fibers_into UBERON:0012453 ! nerve ending relationship: part_of UBERON:0034729 ! sympathetic nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0011927 @@ -316268,6 +317191,7 @@ relationship: part_of UBERON:0034729 ! sympathetic nerve id: UBERON:0011929 name: postganglionic parasympathetic fiber def: "A cholinergic axonal fiber projecting from a parasympathetic ganglion to an effector organ." [MP:0008313] +subset: human_reference_atlas synonym: "parasympathetic postganglionic fiber" RELATED [MP:0008313] xref: MESH:D017777 xref: NCIT:C12649 @@ -316280,6 +317204,7 @@ intersection_of: extends_fibers_into UBERON:0012453 ! nerve ending relationship: extends_fibers_into UBERON:0001808 ! parasympathetic ganglion relationship: extends_fibers_into UBERON:0012453 ! nerve ending relationship: part_of UBERON:0004293 ! parasympathetic nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0011930 @@ -317156,8 +318081,13 @@ is_a: UBERON:0003405 ! lobar bronchus of left lung intersection_of: UBERON:0002183 ! lobar bronchus intersection_of: part_of UBERON:0008952 ! upper lobe of left lung relationship: part_of UBERON:0008952 ! upper lobe of left lung -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb" xsd:anyURI [Term] id: UBERON:0012066 @@ -317173,8 +318103,13 @@ is_a: UBERON:0003405 ! lobar bronchus of left lung intersection_of: UBERON:0002183 ! lobar bronchus intersection_of: part_of UBERON:0008953 ! lower lobe of left lung relationship: part_of UBERON:0008953 ! lower lobe of left lung -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb" xsd:anyURI [Term] id: UBERON:0012067 @@ -317747,8 +318682,8 @@ relationship: has_part UBERON:0000009 ! submucosa relationship: has_part UBERON:0000344 ! mucosa relationship: has_part UBERON:0002072 ! hypodermis relationship: has_part UBERON:0002097 ! skin of body -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mcourtot +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mcourtot [Term] id: UBERON:0012126 @@ -317794,7 +318729,7 @@ xref: FMA:59518 xref: SCTID:361926005 is_a: UBERON:0006983 ! anatomical point relationship: part_of UBERON:0007827 {source="FMA"} ! external nose -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/cmungall [Term] id: UBERON:0012129 @@ -317838,9 +318773,9 @@ intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue relationship: composed_primarily_of UBERON:0002481 ! bone tissue relationship: develops_from UBERON:0015077 ! centrale cartilage property_value: curator_notes "This term corresponds both to the navicular bone in the pes and the similar central carpals in the manus" xsd:string +property_value: dc:contributor https://github.com/alex-dececchi +property_value: dc:contributor https://github.com/cmungall property_value: external_ontology_notes "the FMA term is under 'general anatomical term'." xsd:string {external_ontology="FMA"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/alex-dececchi -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall [Term] id: UBERON:0012132 @@ -318540,8 +319475,8 @@ relationship: part_of UBERON:0001003 {source="ISBN:0073040584"} ! skin epidermis id: UBERON:0012245 name: silk def: "A protein fiber composed mainly of fibroin and produced by certain arthropods[WP,modified]." [Wikipedia:Silk] -xref: BTO:0002854 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} -xref: MESH:D047011 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0002854 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D047011 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SPD:0000318 xref: Wikipedia:Silk is_a: UBERON:0000463 {source="SPD"} ! organism substance @@ -319056,9 +319991,9 @@ xref: Wikipedia:Polarity_in_embryogenesis is_a: UBERON:0002050 ! embryonic structure relationship: existence_starts_during UBERON:0000106 {source="XAO"} ! zygote stage property_value: curator_notes "Like many of the early_development classes in this ontology, this class requires review for its applicability across vertebrates. See the tracker item for further discussion." xsd:string +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/5/5e/Oocyte_Poles.jpg" xsd:anyURI -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly [Term] id: UBERON:0012287 @@ -319370,8 +320305,8 @@ synonym: "lateral cervical node" EXACT [FMA:61232] xref: FMA:61232 xref: SCTID:167763000 is_a: UBERON:0002429 {source="FMA"} ! cervical lymph node -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0012307 @@ -319382,8 +320317,8 @@ xref: FMA:61230 xref: SCTID:168259009 xref: Wikipedia:Anterior_cervical_lymph_nodes is_a: UBERON:0002429 {source="FMA"} ! cervical lymph node -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0012308 @@ -319628,7 +320563,7 @@ name: retrocerebral complex def: "Corpora allata with Corpora cardiaca form the retrocerebral complex, a neurosecretory organ." [BTO:0001803] comment: will be ceded to arthropod anatomy ontology xref: BTO:0001803 -xref: FBbt:00001718 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001718 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002368 {source="BTO"} ! endocrine gland relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda @@ -320853,8 +321788,10 @@ is_a: UBERON:0013765 ! digestive system element relationship: connects UBERON:0002107 ! liver relationship: connects UBERON:0002114 ! duodenum relationship: part_of UBERON:0002399 {source="FMA"} ! lesser omentum -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb" xsd:anyURI [Term] id: UBERON:0012473 @@ -321840,8 +322777,10 @@ relationship: attaches_to UBERON:0001103 ! diaphragm relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0001178 {source="FMA"} ! visceral peritoneum relationship: part_of UBERON:0002095 {source="FMA-modified"} ! mesentery -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb" xsd:anyURI [Term] id: UBERON:0013139 @@ -322765,7 +323704,7 @@ synonym: "rete mirabilia" RELATED [Wikipedia:Rete_mirabile] synonym: "rete mirabilis" RELATED [Wikipedia:Rete_mirabile] synonym: "retie mirabilia" RELATED OMO:0003004 [Wikipedia:Rete_mirabile] synonym: "wonderful net" RELATED [Wikipedia:Rete_mirabile] -xref: BTO:0006363 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006363 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: FMA:76728 xref: Wikipedia:Rete_mirabile is_a: UBERON:0002049 ! vasculature @@ -323351,7 +324290,7 @@ synonym: "fossa infratemporalis" RELATED [Wikipedia:Infratemporal_fossa] synonym: "infratemporal" RELATED [Wikipedia:Infratemporal_fossa] synonym: "pterygomaxillary fossa" RELATED [Wikipedia:Infratemporal_fossa] xref: FMA:75308 -xref: MESH:D000080884 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D000080884 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:260616009 xref: Wikipedia:Infratemporal_fossa is_a: UBERON:0004704 ! bone fossa @@ -325461,8 +326400,9 @@ is_a: UBERON:0004921 ! subdivision of digestive tract relationship: adjacent_to UBERON:0000945 ! stomach relationship: part_of UBERON:0002114 ! duodenum relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Small_Intestine.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-female/v1.1/assets/VH_F_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.0/assets/VH_M_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.1/assets/VH_M_Small_Intestine.glb" xsd:anyURI [Term] id: UBERON:0013645 @@ -326621,7 +327561,7 @@ subset: pheno_slim synonym: "arterial blood" EXACT [FMA:83066] synonym: "blood in artery" EXACT [FMA:83066] synonym: "portion of arterial blood" EXACT [FMA:83066] -xref: BTO:0006188 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006188 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: FMA:83066 is_a: UBERON:0000178 ! blood intersection_of: UBERON:0000178 ! blood @@ -326635,7 +327575,7 @@ def: "A blood that is part of a vein." [OBOL:automatic] synonym: "blood in vein" EXACT [FMA:83067] synonym: "portion of venous blood" EXACT [FMA:83067] synonym: "venous blood" EXACT [FMA:83067] -xref: BTO:0006187 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006187 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: FMA:83067 is_a: UBERON:0000178 ! blood intersection_of: UBERON:0000178 ! blood @@ -326682,7 +327622,8 @@ is_a: UBERON:0013758 ! cervical os intersection_of: UBERON:0013758 ! cervical os intersection_of: continuous_with UBERON:0009853 ! body of uterus relationship: continuous_with UBERON:0009853 ! body of uterus -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Uterus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.0/assets/VH_F_Uterus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.1/assets/VH_F_Uterus.glb" xsd:anyURI property_value: external_definition "The internal orifice of the uterus (or internal orifice of the cervix uteri or internal os) is an interior narrowing of the uterine cavity. It corresponds to a slight constriction known as the isthmus that can be observed on the surface of the uterus about midway between the apex and base[Wikipedia:Internal_orifice_of_the_uterus]." xsd:string {source="Wikipedia:Internal_orifice_of_the_uterus"} [Term] @@ -326705,7 +327646,8 @@ relationship: connects UBERON:0000002 ! uterine cervix relationship: connects UBERON:0000996 ! vagina relationship: continuous_with UBERON:0000996 ! vagina relationship: part_of UBERON:0012249 ! ectocervix -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Uterus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.0/assets/VH_F_Uterus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.1/assets/VH_F_Uterus.glb" xsd:anyURI property_value: external_definition "The external orifice of the uterus (or ostium of uterus, or external os) is a small, depressed, somewhat circular aperture on the rounded extremity of the vaginal portion of the cervix. Through this aperture, the cervical cavity communicates with that of the vagina. The external orifice is bounded by two lips, an anterior and a posterior. The anterior is shorter and thicker, though it projects lower than the posterior because of the slope of the cervix. Normally, both lips are in contact with the posterior vaginal wall. Prior to pregnancy, the external orifice has a rounded shape when viewed through the vaginal canal (as through a speculum). Following parturition, the orifice takes on an appearance more like a transverse slit or is 'H-shaped'[Wikipedia:External_orifice_of_the_uterus]." xsd:string {source="Wikipedia:External_orifice_of_the_uterus"} [Term] @@ -326870,7 +327812,7 @@ intersection_of: UBERON:0002030 ! nipple intersection_of: in_left_side_of UBERON:0013702 ! body proper relationship: in_left_side_of UBERON:0013702 ! body proper relationship: part_of UBERON:0013702 ! body proper -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-left/v1.0/assets/3d-vh-f-mammary-gland-l.glb" xsd:anyURI property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] @@ -326885,7 +327827,7 @@ intersection_of: UBERON:0002030 ! nipple intersection_of: in_right_side_of UBERON:0013702 ! body proper relationship: in_right_side_of UBERON:0013702 ! body proper relationship: part_of UBERON:0013702 ! body proper -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-right/v1.0/assets/3d-vh-f-mammary-gland-r.glb" xsd:anyURI property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] @@ -327116,7 +328058,7 @@ subset: efo_slim synonym: "embryonic body" RELATED [Wikipedia:Embryoid_body] xref: BTO:0001718 xref: EFO:0004988 -xref: MESH:D058732 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D058732 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: Wikipedia:Embryoid_body is_a: UBERON:0002050 {source="EFO"} ! embryonic structure relationship: composed_primarily_of CL:0002248 {source="Wikipedia"} ! pluripotent stem cell @@ -327427,7 +328369,7 @@ id: UBERON:0014398 name: respiratory muscle def: "Muscle that is part of the respiratory system." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim -xref: MESH:D012132 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D012132 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0003831 ! respiratory system muscle intersection_of: UBERON:0001630 ! muscle organ intersection_of: capable_of_part_of GO:0007585 ! respiratory gaseous exchange by respiratory system @@ -327770,9 +328712,9 @@ relationship: capable_of_part_of NBO:0000412 {source="MP"} ! pupillary light ref relationship: part_of UBERON:0001944 ! pretectal region relationship: present_in_taxon NCBITaxon:7761 ! Myxiniformes relationship: present_in_taxon NCBITaxon:9255 ! Monotremata +property_value: dc:contributor https://github.com/cmungall property_value: external_definition "Any of the groups of neurons located between the thalamus and midbrain that receive binocular sensory input from retinal ganglion cells of the eyes and are responsible for maintaining the pupillary light reflex" xsd:string {source="MP:0009638"} property_value: external_ontology_notes "see notes for pretectal region. Note this is midbrain in FMA, midbrain (mesencephalon) in HBA, midbrain in DHBA" xsd:string {external_ontology="FMA"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: taxon_notes "in hagfishes, there are two: the pretectal nucleus and the nucleus of the posterior commissure[ISBN:0471888893]" xsd:string [Term] @@ -327835,10 +328777,10 @@ relationship: bounding_layer_of UBERON:0002075 ! viscus relationship: located_in UBERON:0001179 ! peritoneal cavity relationship: part_of UBERON:0000916 ! abdomen relationship: part_of UBERON:0002075 ! viscus +property_value: dc:contributor https://github.com/cindyJax +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/paulacalipho property_value: external_definition "Adipose tissue located inside the peritoneal cavity, packed in between internal organs and torso. An excess of visceral fat is known as central obesity, or belly fat, the pot belly or beer belly effect, in which the abdomen protrudes excessively[BTO:0004041]." xsd:string {source="BTO:0004041"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cindyJax -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/paulacalipho [Term] id: UBERON:0014455 @@ -327855,9 +328797,9 @@ intersection_of: part_of UBERON:0000916 ! abdomen intersection_of: part_of UBERON:0002072 ! hypodermis relationship: part_of UBERON:0000916 ! abdomen relationship: part_of UBERON:0002072 ! hypodermis -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cindyJax -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/paulacalipho +property_value: dc:contributor https://github.com/cindyJax +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/paulacalipho [Term] id: UBERON:0014456 @@ -329572,8 +330514,12 @@ xref: UMLS:C1110643 {source="BIRNLEX:1399"} is_a: UBERON:0014640 ! occipital gyrus relationship: part_of UBERON:0002021 ! occipital lobe relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0014609 @@ -329690,6 +330636,7 @@ xref: BAMS:c11n xref: BIRNLEX:1580 xref: DHBA:12883 xref: DMBA:17749 +xref: HBA:9340 xref: neuronames:703 {source="BIRNLEX:1580"} xref: SCTID:280187004 xref: Wikipedia:Cranial_root_of_accessory_nerves @@ -329782,7 +330729,7 @@ subset: human_reference_atlas synonym: "cervical spinal cord anterior horn" RELATED [BIRNLEX:1680] synonym: "cervical spinal cord ventral horn" EXACT HUMAN_PREFERRED [BIRNLEX:1680] xref: BIRNLEX:1680 -xref: MESH:D066151 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D066151 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: SCTID:174363005 xref: UMLS:C0228615 {source="BIRNLEX:1680"} xref: UMLS:C1278740 {source="BIRNLEX:1680"} @@ -330870,7 +331817,7 @@ def: "An anatomical structure consisting of multiple cell cluster organs, that h comment: Examples: compound eye; Johnston's organ. subset: upper_level xref: CARO:0010002 -xref: FBbt:00007230 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007230 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000062 ! organ relationship: composed_primarily_of UBERON:0010001 ! cell cluster organ relationship: has_component UBERON:0010001 {min_cardinality="2"} ! cell cluster organ @@ -332614,8 +333561,8 @@ union_of: UBERON:0001423 ! radius bone union_of: UBERON:0006286 ! radius cartilage element union_of: UBERON:0010846 ! radius pre-cartilage condensation relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly [Term] id: UBERON:0015002 @@ -332641,8 +333588,8 @@ union_of: UBERON:0001424 ! ulna union_of: UBERON:0006306 ! ulna cartilage element union_of: UBERON:0010847 ! ulna pre-cartilage condensation relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly [Term] id: UBERON:0015004 @@ -332655,8 +333602,8 @@ union_of: UBERON:0000979 ! tibia union_of: UBERON:0010849 ! tibia cartilage element union_of: UBERON:0010850 ! tibia pre-cartilage condensation relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly [Term] id: UBERON:0015007 @@ -332757,8 +333704,8 @@ union_of: UBERON:0001446 ! fibula union_of: UBERON:0010851 ! fibula cartilage element union_of: UBERON:0010852 ! fibula pre-cartilage condensation relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly [Term] id: UBERON:0015014 @@ -334115,6 +335062,8 @@ id: UBERON:0015134 name: main lactiferous duct xref: FMA:62102 is_a: UBERON:0001765 {source="FMA"} ! mammary duct +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-left/v1.0/assets/3d-vh-f-mammary-gland-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-right/v1.0/assets/3d-vh-f-mammary-gland-r.glb" xsd:anyURI [Term] id: UBERON:0015135 @@ -334285,7 +335234,7 @@ intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0004088 ! orbital region relationship: part_of UBERON:0004088 ! orbital region relationship: part_of UBERON:0035639 {source="inferred"} ! ocular adnexa -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/cmungall property_value: taxon_notes "the only orbital gland found in anuran amphibians is either the Harderian or the lacrimal; if it is a lacrimal, then a progressive lateral migration of the lacrimal glands must occur through the amniotes[PMID:7559104]" xsd:string property_value: taxon_notes "the only orbital gland found in anuran amphibians is the Harderian[PMID:8843648]" xsd:string @@ -334454,7 +335403,7 @@ def: "Light reflecting layer found in a variety of different types of eye." [htt subset: functional_classification synonym: "tapetal layer" EXACT [] synonym: "tapetum layer" EXACT [] -xref: BTO:0001350 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0001350 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SPD:0000343 is_a: UBERON:0000957 ! lamina relationship: has_quality PATO:0001297 ! reflectivity @@ -334673,7 +335622,7 @@ id: UBERON:0015203 name: non-connected functional system def: "An anatomical group whose component structures share a common function." [AEO:0000093, AEO:JB, FBbt:00007278, FBC:DOS] xref: AEO:0000093 -xref: FBbt:00007278 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007278 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0034923 ! disconnected anatomical group [Term] @@ -334854,7 +335803,7 @@ def: "The caudal, pulsatile region of the dorsal vessel of the arthropod circula synonym: "adult heart" NARROW SENSU [FBbt:00003154, NCBITaxon:50557] synonym: "embryonic/larval heart" NARROW SENSU [FBbt:00001675, NCBITaxon:50557] synonym: "heart" RELATED SENSU [NCBITaxon:50557] -xref: FBbt:00003154 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003154 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: SPD:0000130 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007100 ! primary circulatory organ @@ -334866,7 +335815,7 @@ id: UBERON:0015231 name: circulatory system dorsal vessel def: "A tube that runs longitudinally through the thorax and abdomen, along the inside of the dorsal body wall and that forms the major structural component of the open circulatory system of arthropods." [UBERON:cjm] synonym: "dorsal vessel" RELATED SENSU [FBbt:00058291, NCBITaxon:50557] -xref: FBbt:00058291 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00058291 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000055 ! vessel is_a: UBERON:0004120 ! mesoderm-derived structure relationship: develops_from UBERON:0000926 ! mesoderm @@ -335432,7 +336381,7 @@ synonym: "short saphenal nerve" RELATED [] xref: EMAPA:37757 {source="MA:th"} xref: FMA:44688 xref: MA:0003111 -xref: MESH:D013497 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D013497 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C77675 xref: SCTID:181073006 xref: Wikipedia:Sural_nerve @@ -336989,6 +337938,7 @@ relationship: part_of UBERON:0003625 ! manual digit 5 id: UBERON:0016430 name: palmar branch of median nerve def: "The palmar branch of the median nerve is a branch of the median nerve which arises at the lower part of the forearm and innervates skin of proximal central palm and thenar eminence." [http://medical-dictionary.thefreedictionary.com/palmar+branch+of+median+nerve, Wikipedia:Palmar_branch_of_the_median_nerve] +subset: human_reference_atlas subset: pheno_slim synonym: "median nerve palmar branch" EXACT [FMA:44836] synonym: "palmar branch of anterior interosseous nerve" EXACT [FMA:44836] @@ -337003,6 +337953,7 @@ relationship: innervates UBERON:0008878 ! palmar part of manus relationship: innervates UBERON:0017716 ! thenar eminence relationship: part_of UBERON:0001148 ! median nerve relationship: part_of UBERON:0002102 ! forelimb +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: structure_notes "does not pass through the carpal tunnel" xsd:string [Term] @@ -337012,7 +337963,7 @@ def: "Subdivision of thorax which includes all structures from the skin to the c subset: pheno_slim xref: EMAPA:37233 {source="MA:th"} xref: FMA:50060 -xref: MESH:D035441 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D035441 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C62484 xref: SCTID:181608004 is_a: UBERON:0000060 ! anatomical wall @@ -337319,8 +338270,10 @@ intersection_of: bounding_layer_of UBERON:0002107 ! liver relationship: bounding_layer_of UBERON:0002107 ! liver relationship: composed_primarily_of UBERON:0018135 ! fibrocollagenous connective tissue relationship: part_of UBERON:0002107 ! liver -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb" xsd:anyURI property_value: structure_notes "It consists of type III collagen and extends to the stroma of endothelial sinusoids. It is covered by a single layer of mesothelial cells." xsd:string [Term] @@ -337420,9 +338373,9 @@ synonym: "centrum of vertebra" EXACT [] xref: VSAO:0000183 is_a: UBERON:0004765 {source="VSAO"} ! skeletal element relationship: part_of UBERON:0010913 {source="VSAO"} ! vertebral element +property_value: dc:contributor https://github.com/cmungall property_value: external_definition "Skeletal element that surrounds the notochord.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000183", ontology="VSAO", source="VSAO:curator"} property_value: external_definition "the main cylindrical portion of the vertebra ventral to the vertebral canal" xsd:string {source="MP:0000141,ISBN:0-683-40008-8,PMID:10572046"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: taxon_notes "The vertebral centrum may be cartilaginous, develop as cartilage but be replaced by bone or mineralized, or form directly through intramembranous ossification." xsd:string [Term] @@ -337591,12 +338544,14 @@ relationship: part_of UBERON:0000474 ! female reproductive system [Term] id: UBERON:0016508 name: pelvic ganglion +subset: human_reference_atlas synonym: "inferior hypogastric ganglion" EXACT [FMA:80131] synonym: "pelvic ganglia" RELATED OMO:0003004 [] xref: EMAPA:31527 xref: FMA:80131 xref: SCTID:324760006 is_a: UBERON:0003964 {source="FMA"} ! prevertebral ganglion +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0016509 @@ -337887,7 +338842,7 @@ xref: DMBA:16016 xref: EMAPA:35667 xref: FMA:242203 xref: MA:0000916 -xref: MESH:D010296 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D010296 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:2473 xref: NLX:79282 xref: SCTID:369217001 @@ -337953,7 +338908,7 @@ xref: DHBA:10235 xref: DMBA:16044 xref: FMA:242201 xref: MA:0000941 -xref: MESH:D013702 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D013702 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NLX:94939 xref: SCTID:362343001 is_a: UBERON:0016529 ! cortex of cerebral lobe @@ -338982,7 +339937,7 @@ id: UBERON:0016884 name: shoulder joint def: "The joint that is formed by the union of the humerus, the scapula (or shoulder blade), and the clavicle (or collarbone). Commonly thought of as a single joint, the shoulder is actually made up of two separate joints - the glenohumeral and acromioclavicular joints." [http://www.innerbody.com/image/skel17.html] synonym: "joint of shoulder region" EXACT [] -xref: MESH:D012785 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D012785 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:361835002 is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint @@ -339960,6 +340915,7 @@ is_a: UBERON:0005486 ! venous dural sinus id: UBERON:0017641 name: meningeal branch of spinal nerve def: "Branch of spinal nerve that innervates the structures of the vertebral column." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Spinal_nerve] +subset: human_reference_atlas synonym: "ramus meningeus nervorum spinales" EXACT [FMA:5988] synonym: "recurrent meningeal branch of spinal nerve" EXACT [FMA:5988] synonym: "sinuvertebral branch of spinal nerve" EXACT [FMA:5988] @@ -339970,11 +340926,13 @@ xref: Wikipedia:Meningeal_branches_of_spinal_nerve is_a: UBERON:0001021 ! nerve relationship: branching_part_of UBERON:0005476 {source="FMA"} ! spinal nerve trunk relationship: part_of UBERON:0005476 ! spinal nerve trunk +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0017642 name: communicating branch of spinal nerve def: "Rami communicans (plural rami communicantes) is the term used for a nerve which connects two other nerves. When used without further definition, it almost always refers to a communicating branch between a spinal nerve and the sympathetic trunk. More specifically, it usually refers to one of the following: Gray ramus communicans White ramus communicans." [Wikipedia:Rami_communicans] +subset: human_reference_atlas synonym: "rami communicantes" BROAD [Wikipedia:Rami_communicans] synonym: "rami communicantes of spinal nerve" RELATED [Wikipedia:Rami_communicans] xref: FMA:5874 @@ -339983,6 +340941,7 @@ xref: Wikipedia:Rami_communicans is_a: UBERON:0001021 ! nerve relationship: branching_part_of UBERON:0005476 ! spinal nerve trunk relationship: part_of UBERON:0005476 ! spinal nerve trunk +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0017643 @@ -340604,8 +341563,8 @@ relationship: has_part UBERON:0001912 ! lobule of mammary gland relationship: part_of UBERON:0000310 {gci_relation="part_of", gci_filler="NCBITaxon:9606"} ! breast relationship: part_of UBERON:0001911 ! mammary gland relationship: part_of UBERON:0002100 ! trunk -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-l.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-left/v1.0/assets/3d-vh-f-mammary-gland-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-right/v1.0/assets/3d-vh-f-mammary-gland-r.glb" xsd:anyURI property_value: editor_note "The FMA class 'lactiferous gland' may be equivalent to this" xsd:string [Term] @@ -340671,7 +341630,7 @@ id: UBERON:0018144 name: cervical rib def: "A rib that is attached to a cervical vertebra." [http://orcid.org/0000-0002-6601-2165] xref: EMAPA:37825 {source="MA:th"} -xref: MESH:D057070 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D057070 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0002228 ! rib is_a: UBERON:0003458 ! neck bone intersection_of: UBERON:0002228 ! rib @@ -341101,9 +342060,9 @@ def: "A life cycle stage that starts at completion of development and growth of synonym: "adulthood stage" RELATED [] is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000113 ! post-juvenile adult stage -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/ANiknejad -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/fbastian +property_value: dc:contributor https://github.com/ANiknejad +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/fbastian [Term] id: UBERON:0018242 @@ -341225,8 +342184,11 @@ is_a: UBERON:0009029 ! pudendal vein relationship: connected_to UBERON:0001317 ! internal iliac vein relationship: part_of RO:0002577 ! system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI property_value: taxon_notes "In humans, they begin in the deep veins of the penis which issue from the corpus cavernosum penis, accompany the internal pudendal artery, and unite to form a single vessel, which ends in the internal iliac vein. They receive the veins from the urethral bulb, and the perineal and inferior hemorrhoidal veins" xsd:string [Term] @@ -342345,7 +343307,7 @@ id: UBERON:0018382 name: second instar larva def: "Instar: a stage in the life of an arthropod (as an insect) between two successive molts." [BTO:0001224] xref: BTO:0001224 -xref: FBbt:00005338 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005338 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002548 {source="BTO"} ! larva relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda @@ -342371,7 +343333,7 @@ id: UBERON:0018388 name: cercaria def: "A usually tadpole-shaped larval trematode worm that develops in a molluscan host from a redia." [BTO:0005513] xref: BTO:0005513 -xref: MESH:D058487 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D058487 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0002548 {source="BTO"} ! larva relationship: only_in_taxon NCBITaxon:6178 ! Trematoda @@ -342596,6 +343558,7 @@ relationship: part_of UBERON:0001486 ! hip joint id: UBERON:0018412 name: vidian nerve def: "A nerve that is formed by the junction of the great petrosal nerve and the deep petrosal nerve and continues on to innervate the palate, nose and lacrimal gland." [http://medical-dictionary.thefreedictionary.com/vidian+nerve, Wikipedia:Nerve_of_pterygoid_canal] +subset: human_reference_atlas synonym: "nerve of pterygoid canal" EXACT [FMA:67584] synonym: "nerve of the pterygoid canal" RELATED [Wikipedia:Nerve_of_pterygoid_canal] synonym: "pterygoid canal nerve" EXACT [FMA:67584] @@ -342608,6 +343571,7 @@ is_a: UBERON:0011779 ! nerve of head region relationship: branching_part_of UBERON:0001647 ! facial nerve relationship: innervates UBERON:0007375 ! roof of mouth relationship: part_of UBERON:0001647 ! facial nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: external_ontology_notes "FMA classifies as an anatomical junction" xsd:string {external_ontology="FMA"} [Term] @@ -343726,7 +344690,7 @@ id: UBERON:0018656 name: puparium def: "A chitin-based cuticular shell derived from the cuticle of the final larval instar that surrounds the pupal form of the organism." [Wikipedia:Pupa#Puparium] synonym: "puparia" RELATED OMO:0003004 [] -xref: FBbt:00004987 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004987 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001001 {source="FBbt"} ! chitin-based cuticle is_a: UBERON:0018657 ! pupal case relationship: develops_from UBERON:0002548 ! larva @@ -343816,6 +344780,7 @@ relationship: part_of UBERON:0000948 ! heart id: UBERON:0018675 name: pelvic splanchnic nerve def: "A splanchnic nerves that arises from sacral spinal nerves S2, S3, S4 to provide parasympathetic innervation to the hindgut." [Wikipedia:Pelvic_splanchnic_nerves] +subset: human_reference_atlas synonym: "nervi erigentes" RELATED OMO:0003011 [Wikipedia:Pelvic_splanchnic_nerves] synonym: "nervi pelvici splanchnici" RELATED OMO:0003011 [Wikipedia:Pelvic_splanchnic_nerves] synonym: "nervi splanchnici pelvici" RELATED [Wikipedia:Pelvic_splanchnic_nerves] @@ -343830,6 +344795,7 @@ xref: Wikipedia:Pelvic_splanchnic_nerves is_a: UBERON:0003715 {source="FMA"} ! splanchnic nerve is_a: UBERON:0004293 ! parasympathetic nerve relationship: part_of UBERON:0000011 {source="EHDAA2", source="WP"} ! parasympathetic nervous system +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0018676 @@ -343846,6 +344812,7 @@ is_a: UBERON:0001816 {source="FMA"} ! autonomic nerve plexus id: UBERON:0018679 name: thoracic splanchnic nerve def: "Thoracic splanchnic nerves are splanchnic nerves that arise from the sympathetic trunk in the thorax and travel inferiorly to provide sympathetic innervation to the abdomen. The nerves contain preganglionic sympathetic and general visceral afferent fibers." [Wikipedia:Thoracic_splanchnic_nerves] +subset: human_reference_atlas xref: FMA:6280 xref: Wikipedia:Thoracic_splanchnic_nerves is_a: UBERON:0003715 ! splanchnic nerve @@ -343855,34 +344822,41 @@ intersection_of: connects UBERON:0004863 ! thoracic sympathetic nerve trunk relationship: branching_part_of UBERON:0004863 {source="FMA"} ! thoracic sympathetic nerve trunk relationship: connects UBERON:0004863 ! thoracic sympathetic nerve trunk relationship: part_of UBERON:0004863 ! thoracic sympathetic nerve trunk +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0018680 name: greater splanchnic nerve comment: The nerve travels through the diaphragm and enters the abdominal cavity, where its fibers synapse at the celiac ganglia. The nerve contributes to the celiac plexus, a network of nerves located in the vicinity of where the celiac trunk branches from the abdominal aorta. The fibers in this nerve modulate the activity of the enteric nervous system of the foregut. They also provide the sympathetic innervation to the adrenal medulla, stimulating catecholamine release. +subset: human_reference_atlas synonym: "greater thoracic splanchnic nerve" EXACT [FMA:6281] xref: FMA:6281 xref: SCTID:280503007 is_a: UBERON:0018679 {source="FMA"} ! thoracic splanchnic nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0018681 name: lesser splanchnic nerve comment: The nerve travels inferiorly, lateral to the greater splanchnic nerve. Its fibers synapse with their postganglionic counterparts in the superior mesenteric ganglia, or in the aorticorenal ganglion. The nerve modulates the activity of the enteric nervous system of the midgut. +subset: human_reference_atlas synonym: "lesser thoracic splanchnic nerve" EXACT [FMA:6282] xref: FMA:6282 xref: SCTID:280505000 is_a: UBERON:0018679 {source="FMA"} ! thoracic splanchnic nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0018683 name: lumbar splanchnic nerve def: "The lumbar splanchnic nerves are splanchnic nerves that arise from the lumbar part of the sympathetic trunk and travel to an adjacent plexus near the aorta. They are originated from L1 and L2. These nerves contain preganglionic sympathetic and visceral afferent fibers. The site of synapse is found in the prevertebral ganglia and innervate the smooth muscle and glands of the pelvic viscera and hindgut." [Wikipedia:Lumbar_splanchnic_nerves] +subset: human_reference_atlas synonym: "lumbar splanchnic nerve" RELATED [Wikipedia:Lumbar_splanchnic_nerves] xref: FMA:6287 xref: SCTID:280507008 xref: Wikipedia:Lumbar_splanchnic_nerves is_a: UBERON:0003715 {source="FMA"} ! splanchnic nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0018684 @@ -344789,6 +345763,7 @@ synonym: "glossopharyngeal nerve root" EXACT [BIRNLEX:1533] xref: BIRNLEX:1533 xref: DHBA:12887 xref: DMBA:17747 +xref: HBA:9334 is_a: UBERON:0006843 ! root of cranial nerve intersection_of: UBERON:0002211 ! nerve root intersection_of: extends_fibers_into UBERON:0001649 ! glossopharyngeal nerve @@ -345305,8 +346280,12 @@ xref: Wikipedia:Optic_radiation is_a: UBERON:0022260 {source="FMA"} ! radiation of cerebral hemisphere relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fiber tracts relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0022268 @@ -345323,8 +346302,12 @@ is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001871 {source="HBA"} ! temporal lobe relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: source_atlas Harvard-Oxford:Atlas -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0022271 @@ -345431,8 +346414,12 @@ relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut relationship: overlaps UBERON:0001157 ! transverse colon relationship: overlaps UBERON:0001158 ! descending colon relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb" xsd:anyURI [Term] id: UBERON:0022277 @@ -345457,8 +346444,12 @@ relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut relationship: overlaps UBERON:0001156 ! ascending colon relationship: overlaps UBERON:0001157 ! transverse colon relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb" xsd:anyURI [Term] id: UBERON:0022278 @@ -345707,6 +346698,7 @@ relationship: innervates UBERON:0001712 ! upper eyelid id: UBERON:0022300 name: nasociliary nerve def: "A branch of the ophthalmic nerve that serves to supply the mucous membrane of the nose, the tip of the nose, and the conjunctiva." [http://medical-dictionary.thefreedictionary.com/nasociliary+nerve] +subset: human_reference_atlas synonym: "nasal nerve" EXACT [BTO:0001452] synonym: "nasociliary" RELATED [Wikipedia:Nasociliary_nerve] synonym: "nasociliary nerve" RELATED [BTO:0001452] @@ -345721,11 +346713,13 @@ is_a: UBERON:0011779 ! nerve of head region relationship: branching_part_of UBERON:0000348 {source="BTO"} ! ophthalmic nerve relationship: branching_part_of UBERON:0000942 {source="FMA"} ! frontal nerve (branch of ophthalmic) relationship: part_of UBERON:0000942 ! frontal nerve (branch of ophthalmic) +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0022301 name: long ciliary nerve def: "A branch of the nasociliary nerve that innervates the ciliary muscles, the iris, and the cornea." [http://medical-dictionary.thefreedictionary.com/long+ciliary+nerve, UBERON:cjm] +subset: human_reference_atlas synonym: "long ciliary nerve" RELATED [Wikipedia:Long_ciliary_nerves] synonym: "nervi ciliares longi" RELATED OMO:0003011 [Wikipedia:Long_ciliary_nerves] xref: FMA:52691 @@ -345744,11 +346738,13 @@ relationship: innervates UBERON:0000964 ! cornea relationship: innervates UBERON:0001605 ! ciliary muscle relationship: innervates UBERON:0001769 ! iris relationship: part_of UBERON:0022300 ! nasociliary nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0022302 name: short ciliary nerve def: "A branch of the ciliary ganglion that innervates the ciliary muscles, the iris, and the tunics of the eyeball." [http://medical-dictionary.thefreedictionary.com/long+ciliary+nerve, UBERON:cjm] +subset: human_reference_atlas synonym: "lower branch of ciliary ganglion" EXACT [FMA:7041] synonym: "nervi ciliares breves" RELATED OMO:0003011 [Wikipedia:Short_ciliary_nerves] synonym: "nervi ciliares brevis" RELATED OMO:0003011 [] @@ -345770,6 +346766,7 @@ relationship: innervates UBERON:0001605 ! ciliary muscle relationship: innervates UBERON:0001769 ! iris relationship: innervates UBERON:0012430 ! tunica fibrosa of eyeball relationship: part_of UBERON:0002058 ! main ciliary ganglion +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: structure_notes "Contains preganglionic parasympathetic axons." xsd:string [Term] @@ -346223,8 +347220,12 @@ is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002766 ! fusiform gyrus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: source_atlas Harvard-Oxford:Atlas -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0022367 @@ -346258,8 +347259,12 @@ is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002973 ! parahippocampal gyrus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: source_atlas Harvard-Oxford:Atlas -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0022394 @@ -347310,8 +348315,12 @@ is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0002769 {source="NIFSTD"} ! superior temporal gyrus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0023862 @@ -348252,7 +349261,7 @@ alt_id: UBERON:0025487 synonym: "regional part of gustatory epithelium" EXACT HUMAN_PREFERRED [BIRNLEX:4100] is_obsolete: true consider: BIRNLEX:4100 -consider: http://uri.neuinfo.org/nif/nifstd/nifext_13 +consider: nifext:13 [Term] id: UBERON:0025236 @@ -350956,6 +351965,7 @@ relationship: supplies UBERON:0013129 ! bulb of vestibule id: UBERON:0034728 name: autonomic nerve def: "The autonomic nerve is a small nerve which carries postganglionic sympathetic and parasympathetic neurons from the zygomaticotemporal nerve; a branch of the maxillary nerve, to the lacrimal nerve; a branch of the ophthalmic nerve. These neurons derive from the superior cervical ganglion and the pterygopalatine ganglion respectively. They will travel to the lacrimal gland via the lacrimal nerve. Parasympathetic will induce lacrimation and vice versa." [Wikipedia:Autonomic_nerve] +subset: human_reference_atlas synonym: "nervus visceralis" EXACT [FMA:5866] synonym: "visceral nerve" EXACT [FMA:5866] xref: EMAPA:37957 {source="MA:th"} @@ -350968,6 +351978,7 @@ relationship: branching_part_of UBERON:0036264 ! zygomaticotemporal nerve relationship: extends_fibers_into UBERON:0001805 ! autonomic ganglion relationship: part_of UBERON:0002410 ! autonomic nervous system relationship: part_of UBERON:0036264 ! zygomaticotemporal nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0034729 @@ -352254,8 +353265,8 @@ is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by UBERON:0034920 {gci_relation="part_of", gci_filler="NCBITaxon:40674"} ! infant stage relationship: part_of UBERON:0000112 ! sexually immature stage relationship: preceded_by UBERON:0007221 {gci_relation="part_of", gci_filler="NCBITaxon:32524"} ! neonate stage -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/ANiknejad -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/ANiknejad +property_value: dc:contributor https://github.com/cmungall [Term] id: UBERON:0034920 @@ -352265,8 +353276,8 @@ is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by UBERON:0007221 ! neonate stage relationship: only_in_taxon NCBITaxon:40674 ! Mammalia relationship: part_of UBERON:0018685 ! nursing stage -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/ANiknejad -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/ANiknejad +property_value: dc:contributor https://github.com/cmungall [Term] id: UBERON:0034921 @@ -352300,7 +353311,7 @@ name: disconnected anatomical group def: "Material anatomical entity consisting of multiple anatomical structures that are not connected to each other." [CARO:0020000] subset: common_anatomy xref: CARO:0020000 -xref: FBbt:00007276 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007276 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000465 {source="CARO"} ! material anatomical entity relationship: composed_primarily_of UBERON:0000061 ! anatomical structure relationship: has_component UBERON:0000061 {minCardinality="2"} ! anatomical structure @@ -352338,7 +353349,7 @@ id: UBERON:0034926 name: anatomical row def: "An anatomical collection that is arranged in a line." [http://orcid.org/0000-0002-6601-2165] subset: common_anatomy -xref: FBbt:00100152 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00100152 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0034925 ! anatomical collection relationship: present_in_taxon NCBITaxon:33090 ! Viridiplantae relationship: present_in_taxon NCBITaxon:33208 ! Metazoa @@ -352567,12 +353578,12 @@ relationship: never_in_taxon NCBITaxon:32523 ! Tetrapoda relationship: only_in_taxon NCBITaxon:7776 ! Gnathostomata relationship: part_of UBERON:0001898 ! hypothalamus relationship: present_in_taxon NCBITaxon:8022 {source="PMID:4115676"} ! Oncorhynchus mykiss +property_value: dc:contributor https://github.com/cerivs +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/michaelerice property_value: function_notes "Although its function remains hypothetical, it may contain sensory receptors for depth chemical detection. Other probable functions are osmoregulation ionic transport skeletal growth and tooth regeneration, although other homeostatic functions are not excluded" xsd:string property_value: function_notes "response to photoperiodic signals[PMID:23820554]" xsd:string property_value: function_notes "seasonal receptor[PMID:23820554]" xsd:string -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cerivs -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/michaelerice [Term] id: UBERON:0034944 @@ -352785,8 +353796,8 @@ def: "One of several small clusters of chemoreceptors, baroreceptors, and suppor synonym: "aortic bodies" RELATED OMO:0003004 [Wikipedia:Aortic_body] synonym: "aortic glands" RELATED OMO:0003004 [Wikipedia:Aortic_body] synonym: "Zuckerkandl's body" RELATED [Wikipedia:Aortic_body] -xref: BTO:0006193 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} -xref: MESH:D001016 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006193 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D001016 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C97112 xref: SCTID:75061007 xref: Wikipedia:Aortic_body @@ -353289,7 +354300,7 @@ def: "Either the external or internal abdominal oblique muscles." [UBERON:cjm] synonym: "oblique abdominal muscle" EXACT [MA:0003024] xref: EMAPA:35603 xref: MA:0003024 -xref: MESH:D000071596 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D000071596 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0002461 {is_inferred="true"} ! anterior abdominal wall muscle relationship: part_of UBERON:0006635 ! anterior abdominal wall @@ -353369,8 +354380,11 @@ is_a: UBERON:0035039 ! rectal artery relationship: connecting_branch_of UBERON:0001183 {source="FMA"} ! inferior mesenteric artery relationship: part_of UBERON:0001183 {source="FMA"} ! inferior mesenteric artery relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI [Term] id: UBERON:0035041 @@ -353485,7 +354499,7 @@ relationship: part_of UBERON:0001044 ! saliva-secreting gland [Term] id: UBERON:0035050 name: excretory duct -xref: BTO:0006341 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006341 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0000058 ! duct [Term] @@ -354264,8 +355278,8 @@ relationship: intersects_midsagittal_plane_of UBERON:0000922 ! embryo relationship: only_in_taxon NCBITaxon:6340 ! Annelida relationship: part_of UBERON:0000922 ! embryo relationship: transformation_of UBERON:0035148 ! presumptive axochord -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/ANiknejad -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/ANiknejad +property_value: dc:contributor https://github.com/cmungall [Term] id: UBERON:0035148 @@ -354282,8 +355296,8 @@ relationship: has_potential_to_develop_into UBERON:0035147 ! axochord relationship: intersects_midsagittal_plane_of UBERON:0000922 ! embryo relationship: only_in_taxon NCBITaxon:6340 ! Annelida relationship: part_of UBERON:0000922 ! embryo -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/ANiknejad -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/ANiknejad +property_value: dc:contributor https://github.com/cmungall [Term] id: UBERON:0035149 @@ -354529,8 +355543,11 @@ is_a: UBERON:0001637 ! artery relationship: connecting_branch_of UBERON:0001183 {source="FMA"} ! inferior mesenteric artery relationship: part_of RO:0002577 ! system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI [Term] id: UBERON:0035183 @@ -355174,7 +356191,8 @@ is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0002367 ! prostate gland -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb" xsd:anyURI [Term] id: UBERON:0035338 @@ -355297,8 +356315,12 @@ xref: Wikipedia:Small_cardiac_vein is_a: UBERON:0004148 {source="FMA", source="ncithesaurus"} ! cardiac vein relationship: connected_to UBERON:0005438 ! coronary sinus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI [Term] id: UBERON:0035377 @@ -355376,8 +356398,9 @@ relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0005806 {source="ncithesaurus"} ! portal system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: tributary_of UBERON:0001138 ! superior mesenteric vein -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI [Term] id: UBERON:0035395 @@ -355508,7 +356531,9 @@ is_a: UBERON:0035395 ! branch of left coronary artery relationship: connecting_branch_of UBERON:0001626 {source="FMA"} ! left coronary artery relationship: part_of UBERON:0001626 {source="FMA"} ! left coronary artery relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI [Term] id: UBERON:0035425 @@ -355565,7 +356590,7 @@ is_a: UBERON:0001146 ! suprarenal vein is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0001146 ! suprarenal vein intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism -relationship: connected_to UBERON:0001072 ! posterior vena cava +relationship: connected_to UBERON:0001072 ! inferior vena cava relationship: in_right_side_of UBERON:0000468 ! multicellular organism relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -355594,7 +356619,8 @@ xref: SCTID:279703006 xref: UMLS:C0227959 is_a: UBERON:0006983 ! anatomical point relationship: part_of UBERON:0002367 {source="ncithesaurus"} ! prostate gland -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb" xsd:anyURI [Term] id: UBERON:0035444 @@ -355607,8 +356633,10 @@ is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005172 ! abdomen element is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0002107 ! liver -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb" xsd:anyURI [Term] id: UBERON:0035445 @@ -356117,7 +357145,11 @@ intersection_of: UBERON:0001637 ! artery intersection_of: supplies UBERON:0001155 ! colon relationship: part_of RO:0002577 ! system relationship: supplies UBERON:0001155 ! colon -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI [Term] id: UBERON:0035549 @@ -356243,10 +357275,10 @@ relationship: capable_of_part_of GO:0060361 {source="DOI:10.1038/nature14423"} ! relationship: connected_to UBERON:0009880 ! carpal skeleton relationship: only_in_taxon NCBITaxon:32524 ! Amniota relationship: part_of UBERON:0001440 ! forelimb skeleton -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/alex-dececchi -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/balhoff -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/RDruzinsky +property_value: dc:contributor https://github.com/alex-dececchi +property_value: dc:contributor https://github.com/balhoff +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/RDruzinsky property_value: taxon_notes "in some mammals this is found in a cartilaginous state, and articulates with the lateral border of the carpus." xsd:string [Term] @@ -356748,7 +357780,7 @@ synonym: "parapharyngeal space" EXACT [FMA:55081] synonym: "spatium parapharyngeum" EXACT [FMA:TA] xref: CALOHA:TS-2357 xref: FMA:55081 -xref: MESH:D000080886 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D000080886 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:180439004 xref: SCTID:280190005 xref: Wikipedia:Parapharyngeal_space @@ -357212,6 +358244,7 @@ relationship: part_of UBERON:0035771 ! mesenteric plexus id: UBERON:0035770 name: inferior mesenteric nerve plexus def: "The inferior mesenteric plexus is derived chiefly from the aortic plexus. It surrounds the inferior mesenteric artery, and divides into a number of secondary plexuses, which are distributed to all the parts supplied by the artery, viz. , the left colic and sigmoid plexuses, which supply the descending and sigmoid parts of the colon; and the superior hemorrhoidal plexus, which supplies the rectum and joins in the pelvis with branches from the pelvic plexuses." [Wikipedia:Inferior_mesenteric_plexus] +subset: human_reference_atlas synonym: "inferior mesenteric plexus" EXACT [FMA:6641] synonym: "plexus mesentericus inferior" EXACT OMO:0003011 [FMA:TA] synonym: "plexus nervosus mesentericus inferior" EXACT OMO:0003011 [FMA:TA] @@ -357230,18 +358263,23 @@ relationship: innervates UBERON:0001052 ! rectum relationship: innervates UBERON:0001158 ! descending colon relationship: innervates UBERON:0001159 ! sigmoid colon relationship: part_of RO:0002577 ! system +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0035771 name: mesenteric plexus +subset: human_reference_atlas xref: SCTID:314752009 is_a: UBERON:0001816 ! autonomic nerve plexus +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0035772 name: aortic plexus +subset: human_reference_atlas xref: FMA:80133 is_a: UBERON:0001816 {source="FMA"} ! autonomic nerve plexus +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0035773 @@ -358346,8 +359384,12 @@ is_a: UBERON:0002616 {source="HBA"} ! regional part of brain relationship: part_of UBERON:0016525 {source="HBA"} ! frontal lobe relationship: part_of UBERON:0035933 {source="FMA"} ! paracentral lobule relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI [Term] id: UBERON:0035933 @@ -359029,7 +360071,7 @@ id: UBERON:0036016 name: honey def: "A sweet viscid material elaborated out of the nectar of flowers in the honey sac of various bees." [BTO:0000605, Wikipedia:Honey#Formation] xref: BTO:0000605 -xref: MESH:D006722 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D006722 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: Wikipedia:Honey is_a: UBERON:0036017 ! regurgitated substance relationship: only_in_taxon NCBITaxon:7434 ! Aculeata @@ -359243,7 +360285,7 @@ id: UBERON:0036145 name: glymphatic system def: "Macroscopic waste clearance system that utilizes a unique system of perivascular tunnels, formed by astroglial cells, to promote efficient elimination of soluble proteins and metabolites from the central nervous system." [DOI:10.1007/s11064-015-1581-6, https://github.com/obophenotype/uberon/issues/1260, MGI:sbello] xref: EMAPA:37872 {source="MA:th"} -xref: MESH:D000077502 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D000077502 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0001016 ! nervous system property_value: function_notes "hypothesized to be have roles such as waste clearance, distribution of compounds" xsd:string @@ -359548,6 +360590,7 @@ relationship: present_in_taxon NCBITaxon:4751 ! Fungi id: UBERON:0036216 name: tympanic nerve def: "The tympanic nerve (nerve of Jacobson) is a branch of the glossopharyngeal nerve found near the ear." [Wikipedia:Tympanic_nerve] +subset: human_reference_atlas synonym: "jacobson%27s nerve" RELATED [Wikipedia:Tympanic_nerve] synonym: "nerve of jacobson" RELATED [Wikipedia:Tympanic_nerve] synonym: "tympanic" RELATED [Wikipedia:Tympanic_nerve] @@ -359559,6 +360602,7 @@ xref: Wikipedia:Tympanic_nerve is_a: UBERON:0011779 ! nerve of head region relationship: branching_part_of UBERON:0001649 {source="FMA"} ! glossopharyngeal nerve relationship: part_of UBERON:0001649 ! glossopharyngeal nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0036217 @@ -359635,7 +360679,7 @@ name: vaginal fluid def: "Fluid that lines the vaginal walls that consists of multiple secretions that collect in the vagina from different glands." [http://www.bumc.bu.edu/sexualmedicine/physicianinformation/female-genital-anatomy/] synonym: "vaginal discharge" RELATED [] synonym: "vaginal secretion" RELATED [] -xref: BTO:0003084 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0003084 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0006314 ! bodily fluid intersection_of: UBERON:0006314 ! bodily fluid intersection_of: located_in UBERON:0000996 ! vagina @@ -361760,8 +362804,10 @@ intersection_of: UBERON:0001637 ! artery intersection_of: supplies UBERON:0001152 ! cystic duct relationship: part_of UBERON:0015482 {source="FMA", source="Wikipedia"} ! right hepatic artery relationship: supplies UBERON:0001152 ! cystic duct -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI [Term] id: UBERON:0039228 @@ -362084,7 +363130,7 @@ is_a: UBERON:0001145 {source="FMA"} ! ovarian vein intersection_of: UBERON:0001145 ! ovarian vein intersection_of: drains UBERON:0002118 ! right ovary relationship: drains UBERON:0002118 ! right ovary -relationship: tributary_of UBERON:0001072 {source="FMA"} ! posterior vena cava +relationship: tributary_of UBERON:0001072 {source="FMA"} ! inferior vena cava [Term] id: UBERON:0039857 @@ -362123,8 +363169,8 @@ def: "Subdivision of the head consisting of the area along the lower edge of the subset: phenotype_rcn is_a: UBERON:0001444 ! subdivision of head relationship: part_of UBERON:0008199 ! chin -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger [Term] id: UBERON:1000001 @@ -362136,8 +363182,8 @@ synonym: "cranial hair" RELATED [] synonym: "head hair" RELATED [] is_a: UBERON:0014382 ! collection of hairs on head or neck relationship: part_of UBERON:0000033 ! head -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger [Term] id: UBERON:1000002 @@ -362147,8 +363193,8 @@ subset: phenotype_rcn synonym: "cranial midline" RELATED [] is_a: UBERON:0001444 ! subdivision of head relationship: intersects_midsagittal_plane_of UBERON:0000033 ! head -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger [Term] id: UBERON:1000003 @@ -362172,8 +363218,8 @@ intersection_of: UBERON:0010164 ! collection of hairs intersection_of: part_of UBERON:0001691 ! external ear relationship: composed_primarily_of UBERON:0022279 ! strand of hair on external ear relationship: part_of UBERON:0001691 ! external ear -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger [Term] id: UBERON:1000005 @@ -362182,8 +363228,8 @@ def: "Area along the edge of the external ear." [https://github.com/obophenotype subset: phenotype_rcn is_a: UBERON:0010000 ! multicellular anatomical structure relationship: part_of UBERON:0001691 ! external ear -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger property_value: seeAlso "https://github.com/obophenotype/uberon/issues/1795" xsd:string [Term] @@ -362195,8 +363241,8 @@ is_a: UBERON:0010165 ! collection of hair on face intersection_of: UBERON:0010164 ! collection of hairs intersection_of: part_of UBERON:0008200 ! forehead relationship: part_of UBERON:0008200 ! forehead -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger [Term] id: UBERON:1000007 @@ -362205,8 +363251,8 @@ def: "A bulge, knob, or swelling that protrudes from the forehead." [https://git subset: phenotype_rcn is_a: UBERON:0010188 ! protuberance relationship: part_of UBERON:0008200 ! forehead -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger [Term] id: UBERON:1000008 @@ -362217,8 +363263,8 @@ is_a: UBERON:0001444 ! subdivision of head is_a: UBERON:0015212 ! lateral structure relationship: in_left_side_of UBERON:0001456 ! face relationship: part_of UBERON:0001456 ! face -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger [Term] id: UBERON:1000009 @@ -362227,8 +363273,8 @@ def: "A ridge or peak located along the middle part of the head, located approxi subset: phenotype_rcn is_a: UBERON:0001444 ! subdivision of head relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger [Term] id: UBERON:1000010 @@ -362240,7 +363286,7 @@ synonym: "melanocytic nevus" RELATED [] synonym: "naevus" EXACT [ZFA:0005043] synonym: "nevus" EXACT [ZFA:0005043] xref: EFO:0000625 -xref: MESH:D009506 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D009506 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MPATH:361 xref: TAO:0005043 xref: Wikipedia:Melanocytic_nevus @@ -362274,8 +363320,8 @@ subset: phenotype_rcn is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034929 ! external soft tissue zone relationship: part_of UBERON:0007827 ! external nose -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger [Term] id: UBERON:1000013 @@ -362285,8 +363331,8 @@ subset: phenotype_rcn is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034929 ! external soft tissue zone relationship: part_of UBERON:0007827 ! external nose -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger [Term] id: UBERON:1000014 @@ -362297,8 +363343,8 @@ is_a: UBERON:0001444 ! subdivision of head is_a: UBERON:0015212 ! lateral structure relationship: in_right_side_of UBERON:0001456 ! face relationship: part_of UBERON:0001456 ! face -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger [Term] id: UBERON:1000015 @@ -362312,8 +363358,8 @@ is_a: UBERON:1000021 ! skin of face intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0006333 ! snout relationship: part_of UBERON:0006333 ! snout -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger [Term] id: UBERON:1000016 @@ -362322,8 +363368,8 @@ def: "Subdivision of the head consisting of the pointed or rounded end or extrem subset: phenotype_rcn is_a: UBERON:0034929 ! external soft tissue zone relationship: part_of UBERON:0006333 ! snout -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger [Term] id: UBERON:1000017 @@ -362332,8 +363378,8 @@ def: "Subdivision of the head consisting of the pointed or rounded end or extrem subset: phenotype_rcn is_a: UBERON:0034929 ! external soft tissue zone relationship: part_of UBERON:0001691 ! external ear -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger [Term] id: UBERON:1000018 @@ -362342,8 +363388,8 @@ def: "A small collection or tuft of hairs." [https://github.com/obophenotype/ube subset: phenotype_rcn synonym: "tuft of hair" RELATED [] is_a: UBERON:0010164 ! collection of hairs -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger [Term] id: UBERON:1000019 @@ -362355,9 +363401,9 @@ synonym: "vertex of head" EXACT [FMA:46484] xref: FMA:46484 xref: SCTID:362616002 is_a: UBERON:0001444 ! subdivision of head +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger property_value: external_ontology_notes "in the FMA, vertex is a point and not a subdivision" xsd:string {external_ontology="FMA"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger [Term] id: UBERON:1000020 @@ -362369,8 +363415,8 @@ intersection_of: UBERON:0010165 ! collection of hair on face intersection_of: part_of UBERON:0006333 ! snout relationship: dc-contributor https://orcid.org/0000-0002-9611-1279 relationship: part_of UBERON:0006333 ! snout -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger creation_date: 2012-02-05T05:21:29Z [Term] @@ -362391,8 +363437,8 @@ intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0001456 ! face relationship: dc-contributor https://orcid.org/0000-0002-9611-1279 relationship: part_of UBERON:0001456 ! face -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger creation_date: 2012-02-05T05:23:01Z [Term] @@ -362613,7 +363659,7 @@ id: UBERON:2000006 name: ball def: "The anterior round region of the yolk cell present after the yolk extension forms during the segmentation period. Kimmel et al, 1995." [ZFIN:curator] synonym: "yolk ball" EXACT [ZFIN:ZDB-PUB-961014-576] -xref: MESH:D015452 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D015452 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: ZFA:0000006 is_a: UBERON:0000475 ! organism subdivision relationship: never_in_taxon NCBITaxon:40674 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Mammalia @@ -363121,7 +364167,7 @@ id: UBERON:2000188 name: corpus cerebelli synonym: "cerebellar corpus" EXACT [TAO:0000188] synonym: "corpus cerebellum" EXACT [TAO:0000188] -xref: MESH:D002531 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D002531 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: ZFA:0000188 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002037 ! cerebellum @@ -363731,7 +364777,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000293 name: synencephalon -xref: BTO:0006476 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006476 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: ZFA:0000293 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001894 ! diencephalon @@ -363757,7 +364803,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000297 name: vagal lobe synonym: "nX" RELATED [TAO:0000297] -xref: BTO:0006431 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006431 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -364022,7 +365068,7 @@ synonym: "branchiospine" EXACT [PSPUB:0000164] synonym: "gill rakers" EXACT OMO:0003004 [TAO:0000356] synonym: "gill-raker" EXACT [TAO:0000356] synonym: "gillraker" EXACT [TAO:0000356] -xref: BTO:0002149 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0002149 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: ZFA:0000356 is_a: UBERON:0008907 ! dermal bone relationship: never_in_taxon NCBITaxon:40674 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Mammalia @@ -370877,7 +371923,7 @@ name: manubrium synonym: "intercalarium anterior process" EXACT [DOI:10.1002/dvdy.10387] synonym: "intercalarium horizontal process" EXACT [DOI:10.1111/j.1096-3642.1981.tb01575.x] synonym: "manubrium incudus" EXACT [TAO:Bird_2003] -xref: MESH:D008371 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D008371 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: ZFA:0001601 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:2000461 ! Weberian ossicle @@ -374317,7 +375363,7 @@ id: UBERON:2001977 name: pad def: "Surface structure that is a portion of the integument thickened relative to surrounding area." [TAO:wd] synonym: "pads" EXACT OMO:0003004 [TAO:0001977] -xref: MESH:D058729 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D058729 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:3000961 ! external integument structure relationship: part_of UBERON:0002199 ! integument property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -384147,11 +385193,14 @@ replaced_by: UBERON:3010728 [Term] id: UBERON:3010146 -name: lacrimal -def: "Investing bone in non-teleosts associated with nasolacrimal duct and lying between pars facialis of maxilla and prefrontal and sometimes nasal." [AAO:EJS] +name: obsolete lacrimal +def: "OBSOLETE. Investing bone in non-teleosts associated with nasolacrimal duct and lying between pars facialis of maxilla and prefrontal and sometimes nasal." [AAO:EJS] +comment: The synonym of this term has been merged into 'lacrimal bone'. synonym: "ectethmoid" RELATED [UBERON:3010146] -is_a: UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} +property_value: term_tracker_item "https://github.com/obophenotype/uberon/issues/2804" xsd:string +is_obsolete: true +replaced_by: UBERON:0001680 [Term] id: UBERON:3010156 @@ -385171,7 +386220,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010463 name: animal cap synonym: "animal ectoderm" RELATED [UBERON:3010463] -xref: BTO:0004724 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0004724 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000924 ! ectoderm property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385527,7 +386576,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010586 name: vasa efferentia def: "Sperm travel through these 4 or 5 fine ducts which pass through the mesorchium from the testis to the sexual kidney." [AAO:BMZ] -xref: BTO:0002254 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0002254 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0006946 ! efferent duct property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387066,7 +388115,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:4000104 name: ganoine def: "Odontogenic tissue that is hypermineralized acellular, noncollagenous, covered by an epidermis and often deposited in multiple layers." [PSPUB:0000170] -xref: MESH:C067951 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:C067951 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0003585 ! dermis connective tissue is_a: UBERON:0010365 ! odontoid tissue relationship: part_of UBERON:4000052 ! ganoid scale @@ -387311,7 +388360,7 @@ def: "Median fin that is located posterior to the anus." [TAO:curator] synonym: "nageoire anale" EXACT [PSPUB:0000164] synonym: "proctoptère" EXACT [PSPUB:0000136] synonym: "proctoptérygie" EXACT [PAPUB:0000142, PSPUB:0000140] -xref: BTO:0004652 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0004652 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: ZFA:0001162 is_a: UBERON:4000162 ! median fin intersection_of: UBERON:0008897 ! fin @@ -387329,7 +388378,7 @@ synonym: "tail" RELATED [VSAO:0000164] synonym: "tail fin" RELATED [VSAO:0000164] synonym: "uroptère" EXACT [PSPUB:0000135] synonym: "uroptérygie" EXACT [PSPUB:0000140] -xref: BTO:0001827 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0001827 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: ZFA:0001058 is_a: UBERON:4000162 ! median fin intersection_of: UBERON:0008897 ! fin @@ -389335,7 +390384,7 @@ relationship: part_of UBERON:0011583 ! stylopodial skeleton id: UBERON:4200215 name: suture def: "Line of junction between two parts immovably connected. Modified from Henderson's Dictionary of Biological Terms." [PHENOSCAPE] -xref: MESH:D013537 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D013537 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0002209 ! fibrous joint [Term] @@ -390535,7 +391584,7 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300194 name: photophore def: "A light-emitting organ which appears as luminous spots on various marine animals, including fish and cephalopods." [PHENOSCAPE] {comment="https://en.wikipedia.org/wiki/Photophore"} -xref: BTO:0001477 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0001477 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0000062 ! organ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: never_in_taxon NCBITaxon:314146 ! Euarchontoglires @@ -392301,7 +393350,7 @@ id: UBERON:6000002 name: arthropod tagma def: "One of the main divisions of the whole organism of arthropods formed from groups of segments." [doi:10.1016/B978-0-12-385026-3.00024-3] comment: Strictly speaking the term "tagma" cam be used for any metameric organism, however we follow the common usage which is to restrict the term to arthropods. -xref: FBbt:00000002 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000002 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0011676 ! subdivision of organism along main body axis relationship: never_in_taxon NCBITaxon:7742 ! Vertebrata relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda @@ -392310,7 +393359,7 @@ relationship: part_of UBERON:0000468 ! multicellular organism [Term] id: UBERON:6000004 name: panarthropod head -xref: FBbt:00000004 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000004 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000033 ! head intersection_of: UBERON:0000033 ! head intersection_of: part_of NCBITaxon:88770 ! Panarthropoda @@ -392321,7 +393370,7 @@ id: UBERON:6000005 name: insect ocular segment def: "Head segment derived from the second embryonic segment (between the labral and antennal segments). In the larva, this segment includes Bolwig's organ." [FlyBase:FBrf0055841, FlyBase:FBrf0075072] synonym: "acron" RELATED [] -xref: FBbt:00000005 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000005 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000007 ! procephalic segment relationship: never_in_taxon NCBITaxon:7742 ! Vertebrata relationship: only_in_taxon NCBITaxon:50557 {source="cjm"} ! Insecta @@ -392330,7 +393379,7 @@ relationship: only_in_taxon NCBITaxon:50557 {source="cjm"} ! Insecta id: UBERON:6000006 name: insect head segment def: "Any segment that is part of some insect head." [UBERON:cjm] -xref: FBbt:00000006 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000006 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000914 ! organismal segment intersection_of: UBERON:0000914 ! organismal segment intersection_of: part_of UBERON:0000033 ! head @@ -392345,7 +393394,7 @@ synonym: "cephalic segment" RELATED [] synonym: "pregnathal segment" EXACT [] synonym: "preoral segment" EXACT [] synonym: "procephalon" RELATED [] -xref: FBbt:00000007 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000007 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000006 ! insect head segment relationship: never_in_taxon NCBITaxon:7742 ! Vertebrata relationship: part_of UBERON:0000033 ! head @@ -392355,14 +393404,14 @@ id: UBERON:6000008 name: labral segment def: "Procephalic segment anterior to the antennal segment. In the adult it bears the clypeo-labrum." [FlyBase:FBrf0075072, FlyBase:FBrf0089570] synonym: "clypeo-labrum" RELATED [] -xref: FBbt:00000008 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000008 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000007 ! procephalic segment [Term] id: UBERON:6000009 name: antennal segment def: "Segment anterior to the intercalary segment. In the adult it bears the antennae." [FBC:DOS] -xref: FBbt:00000009 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000009 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000007 ! procephalic segment [Term] @@ -392370,7 +393419,7 @@ id: UBERON:6000011 name: insect gnathal segment def: "The head segments that develop posterior to the embryonic/larval mouth." [FBC:gg] synonym: "postoral segment" RELATED [] -xref: FBbt:00000011 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000011 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000006 ! insect head segment relationship: part_of UBERON:0000033 ! head @@ -392378,14 +393427,14 @@ relationship: part_of UBERON:0000033 ! head id: UBERON:6000014 name: insect labial segment def: "Most posterior of the gnathal segments. In the adult it bears a pair of fused appendages, the labia, and its ectodermal invaginations give rise to the salivary glands." [FlyBase:FBrf0007734] -xref: FBbt:00000014 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000014 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000011 ! insect gnathal segment [Term] id: UBERON:6000015 name: insect thorax def: "The main middle section of the insect body comprising three thoracic rings: the pro-, the meso- and the metathoraces which are more or less well fused and cask-like sometimes having on the upper lateral part one of two pairs of wings, while on the ventrolateral part each thoracic ring bears a pair of legs." [FlyBase:FBrf0166419] -xref: FBbt:00000015 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000015 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000002 ! arthropod tagma relationship: only_in_taxon NCBITaxon:50557 ! Insecta @@ -392393,7 +393442,7 @@ relationship: only_in_taxon NCBITaxon:50557 ! Insecta id: UBERON:6000016 name: insect thoracic segment def: "Any segment (UBERON:6000003) that is part of some thorax (UBERON:6000015)." [FBC:auto_generated_definition] -xref: FBbt:00000016 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000016 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000914 ! organismal segment intersection_of: UBERON:0000914 ! organismal segment intersection_of: part_of UBERON:6000015 ! insect thorax @@ -392406,7 +393455,7 @@ def: "The first (most anterior) segment of the thorax." [FBC:DOS] synonym: "prothorax" RELATED [] synonym: "t1" RELATED [] synonym: "thoracic segment 1" RELATED [] -xref: FBbt:00000017 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000017 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000016 ! insect thoracic segment relationship: part_of UBERON:6000015 ! insect thorax @@ -392417,7 +393466,7 @@ def: "The second (middle) segment of the thorax." [FBC:DOS] synonym: "mesothorax" RELATED [] synonym: "t2" RELATED [] synonym: "thoracic segment 2" RELATED [] -xref: FBbt:00000018 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000018 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000016 ! insect thoracic segment relationship: part_of UBERON:6000015 ! insect thorax @@ -392428,7 +393477,7 @@ def: "The third (most posterior) segment of the thorax." [FBC:DOS] synonym: "metathorax" RELATED [] synonym: "t3" RELATED [] synonym: "thoracic segment 3" RELATED [] -xref: FBbt:00000019 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000019 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000016 ! insect thoracic segment relationship: part_of UBERON:6000015 ! insect thorax @@ -392436,7 +393485,7 @@ relationship: part_of UBERON:6000015 ! insect thorax id: UBERON:6000020 name: insect abdomen def: "The most posterior of the three tagma (UBERON:6000002)." [FlyBase:FBrf0166419] -xref: FBbt:00000020 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000020 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000002 ! arthropod tagma relationship: only_in_taxon NCBITaxon:50557 ! Insecta @@ -392444,7 +393493,7 @@ relationship: only_in_taxon NCBITaxon:50557 ! Insecta id: UBERON:6000021 name: insect abdominal segment def: "Metameric subdivision of the abdomen." [FBC:SPR] -xref: FBbt:00000021 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000021 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000914 ! organismal segment intersection_of: UBERON:0000914 ! organismal segment intersection_of: part_of UBERON:6000020 ! insect abdomen @@ -392454,7 +393503,7 @@ relationship: part_of UBERON:6000020 ! insect abdomen id: UBERON:6000029 name: insect abdominal segment 8 synonym: "a8" RELATED [] -xref: FBbt:00000029 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000029 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000021 ! insect abdominal segment relationship: part_of UBERON:6000020 ! insect abdomen @@ -392462,7 +393511,7 @@ relationship: part_of UBERON:6000020 ! insect abdomen id: UBERON:6000030 name: insect abdominal segment 9 synonym: "a9" RELATED [] -xref: FBbt:00000030 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000030 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000021 ! insect abdominal segment relationship: part_of UBERON:6000020 ! insect abdomen @@ -392471,7 +393520,7 @@ id: UBERON:6000046 name: insect dorsal appendage def: "Paired appendage of the eggshell, located on the anterior-dorsal side of the egg, just posterior to the operculum. Functions as a respiratory structures." [FBC:DOS] synonym: "chorionic appendage" EXACT [FlyBase:FBrf0047871] -xref: FBbt:00000046 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000046 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007248 ! insect chorionic specialization [Term] @@ -392483,7 +393532,7 @@ is_obsolete: true [Term] id: UBERON:6000096 name: insect ventral furrow -xref: FBbt:00000096 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000096 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:6007424 ! insect epithelial furrow relationship: part_of UBERON:0000922 ! embryo @@ -392491,7 +393540,7 @@ relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:6000097 name: insect cephalic furrow -xref: FBbt:00000097 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000097 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:6007424 ! insect epithelial furrow relationship: part_of UBERON:0004734 ! gastrula @@ -392500,7 +393549,7 @@ relationship: part_of UBERON:0004734 ! gastrula id: UBERON:6000104 name: insect mesoderm anlage synonym: "ventral plate" RELATED [] -xref: FBbt:00000104 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000104 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007688 ! anlage @@ -392513,7 +393562,7 @@ id: UBERON:6000112 name: insect dorsal ectoderm synonym: "AdorEc" RELATED [] synonym: "dorEc" RELATED [] -xref: FBbt:00000112 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000112 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0010000 ! multicellular anatomical structure relationship: develops_from UBERON:6005427 ! insect ectoderm anlage relationship: part_of UBERON:6007045 ! insect trunk ectoderm @@ -392522,7 +393571,7 @@ relationship: part_of UBERON:6007045 ! insect trunk ectoderm id: UBERON:6000119 name: insect anterior ectoderm def: "The region of the ectoderm anterior to the cephalic furrow." [FBC:DOS] -xref: FBbt:00000119 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000119 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0010000 ! multicellular anatomical structure relationship: only_in_taxon NCBITaxon:50557 ! Insecta relationship: part_of UBERON:0000924 ! ectoderm @@ -392534,7 +393583,7 @@ def: "The mesoderm of segments T1-A9. It first becomes morphologically distinct synonym: "AtrunkMes" RELATED [] synonym: "P2 TrMes" RELATED [FBC:DOS] synonym: "TrMes" RELATED [] -xref: FBbt:00000128 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000128 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000926 ! mesoderm relationship: develops_from UBERON:6000104 ! insect mesoderm anlage relationship: in_taxon NCBITaxon:6656 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Arthropoda @@ -392542,7 +393591,7 @@ relationship: in_taxon NCBITaxon:6656 {source="https://github.com/obophenotype/u [Term] id: UBERON:6000130 name: insect visceral mesoderm -xref: FBbt:00000130 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000130 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002050 ! embryonic structure relationship: in_taxon NCBITaxon:6656 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Arthropoda relationship: part_of UBERON:6000128 ! insect trunk mesoderm @@ -392565,7 +393614,7 @@ relationship: part_of UBERON:6000131 ! insect mesodermal crest id: UBERON:6000137 name: embryonic tagma def: "Any tagma (UBERON:6000002) that is part of some embryo (UBERON:6000052)." [FBC:auto_generated_definition] -xref: FBbt:00000137 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000137 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000002 ! arthropod tagma intersection_of: UBERON:6000002 ! arthropod tagma intersection_of: part_of UBERON:0000922 ! embryo @@ -392575,7 +393624,7 @@ relationship: part_of UBERON:0000922 ! embryo id: UBERON:6000154 name: insect embryonic segment def: "Any insect segment that is part of some embryo." [UBERON:cjm] -xref: FBbt:00000154 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000154 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000914 ! organismal segment intersection_of: UBERON:0000914 ! organismal segment intersection_of: only_in_taxon NCBITaxon:50557 ! Insecta @@ -392588,7 +393637,7 @@ relationship: part_of UBERON:0000922 ! embryo id: UBERON:6000157 name: insect embryonic head segment def: "Any segment that is part of some insect embryonic head." [UBERON:cjm] -xref: FBbt:00000157 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000157 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000006 ! insect head segment is_a: UBERON:6000154 ! insect embryonic segment intersection_of: UBERON:0000914 ! organismal segment @@ -392601,7 +393650,7 @@ relationship: part_of UBERON:0008816 ! embryonic head id: UBERON:6000158 name: insect embryonic procephalic segment def: "Any procephalic segment (UBERON:6000007) that is part of some embryonic head (UBERON:6000155) in an insect." [FBC:auto_generated_definition] -xref: FBbt:00000158 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000158 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000007 ! procephalic segment is_a: UBERON:6000157 ! insect embryonic head segment intersection_of: UBERON:6000007 ! procephalic segment @@ -392614,7 +393663,7 @@ relationship: part_of UBERON:0008816 ! embryonic head id: UBERON:6000160 name: insect embryonic antennal segment def: "Any antennal segment (UBERON:6000009) that is part of some embryonic head (UBERON:6000155)." [FBC:auto_generated_definition] -xref: FBbt:00000160 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000160 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000009 ! antennal segment is_a: UBERON:6000158 ! insect embryonic procephalic segment intersection_of: UBERON:6000009 ! antennal segment @@ -392627,7 +393676,7 @@ relationship: part_of UBERON:0008816 ! embryonic head id: UBERON:6000162 name: insect embryonic gnathal segment def: "Any gnathal segment (UBERON:6000011) that is part of some embryonic head (UBERON:6000155)." [FBC:auto_generated_definition] -xref: FBbt:00000162 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000162 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000011 ! insect gnathal segment is_a: UBERON:6000157 ! insect embryonic head segment intersection_of: UBERON:6000011 ! insect gnathal segment @@ -392638,7 +393687,7 @@ relationship: part_of UBERON:0008816 ! embryonic head id: UBERON:6000165 name: insect embryonic labial segment def: "Any labial segment (UBERON:6000014) that is part of some embryonic head (UBERON:6000155)." [FBC:auto_generated_definition] -xref: FBbt:00000165 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000165 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000014 ! insect labial segment is_a: UBERON:6000162 ! insect embryonic gnathal segment intersection_of: UBERON:6000014 ! insect labial segment @@ -392649,7 +393698,7 @@ relationship: part_of UBERON:0008816 ! embryonic head id: UBERON:6000166 name: insect embryonic thorax def: "Any thorax (UBERON:6000015) that is part of some embryo (UBERON:6000052)." [FBC:auto_generated_definition] -xref: FBbt:00000166 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000166 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000015 ! insect thorax is_a: UBERON:6000137 ! embryonic tagma intersection_of: UBERON:6000015 ! insect thorax @@ -392660,7 +393709,7 @@ relationship: part_of UBERON:0000922 ! embryo id: UBERON:6000167 name: insect embryonic thoracic segment def: "Any segment (UBERON:6000003) that is part of some embryonic thorax (UBERON:6000166)." [FBC:auto_generated_definition] -xref: FBbt:00000167 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000167 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000016 ! insect thoracic segment is_a: UBERON:6000154 ! insect embryonic segment intersection_of: UBERON:0000914 ! organismal segment @@ -392674,7 +393723,7 @@ def: "Prothoracic segment of the embryo." [FBC:DOS] synonym: "prothorax" RELATED [] synonym: "t1" RELATED [] synonym: "thoracic segment 1" RELATED [] -xref: FBbt:00000168 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000168 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000017 ! insect prothoracic segment is_a: UBERON:6000167 ! insect embryonic thoracic segment intersection_of: UBERON:6000017 ! insect prothoracic segment @@ -392688,7 +393737,7 @@ def: "Mesothoracic segment of the embryo." [FBC:DOS] synonym: "mesothorax" RELATED [] synonym: "t2" RELATED [] synonym: "thoracic segment 2" RELATED [] -xref: FBbt:00000169 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000169 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000018 ! insect mesothoracic segment is_a: UBERON:6000167 ! insect embryonic thoracic segment intersection_of: UBERON:6000018 ! insect mesothoracic segment @@ -392702,7 +393751,7 @@ def: "Metathoracic segment of the embryo." [FBC:DOS] synonym: "metathorax" RELATED [] synonym: "t3" RELATED [] synonym: "thoracic segment 3" RELATED [] -xref: FBbt:00000170 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000170 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000019 ! insect metathoracic segment is_a: UBERON:6000167 ! insect embryonic thoracic segment intersection_of: UBERON:6000019 ! insect metathoracic segment @@ -392713,7 +393762,7 @@ relationship: part_of UBERON:6000166 ! insect embryonic thorax id: UBERON:6000171 name: insect embryonic abdomen def: "Abdomen of the embryo." [FBC:DOS] -xref: FBbt:00000171 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000171 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000020 ! insect abdomen is_a: UBERON:6000137 ! embryonic tagma intersection_of: UBERON:6000020 ! insect abdomen @@ -392724,7 +393773,7 @@ relationship: part_of UBERON:0000922 ! embryo id: UBERON:6000172 name: insect embryonic abdominal segment def: "Metameric subdivision of the embryonic abdomen." [FBC:SPR] -xref: FBbt:00000172 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000172 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000021 ! insect abdominal segment is_a: UBERON:6000154 ! insect embryonic segment intersection_of: UBERON:0000914 ! organismal segment @@ -392736,7 +393785,7 @@ id: UBERON:6000180 name: insect embryonic abdominal segment 8 def: "Any abdominal segment 8 (UBERON:6000029) that is part of some embryonic abdomen (UBERON:6000171)." [FBC:auto_generated_definition] synonym: "a8" RELATED [] -xref: FBbt:00000180 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000180 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000029 ! insect abdominal segment 8 is_a: UBERON:6000172 ! insect embryonic abdominal segment intersection_of: UBERON:6000029 ! insect abdominal segment 8 @@ -392748,7 +393797,7 @@ id: UBERON:6000181 name: insect embryonic abdominal segment 9 def: "Any abdominal segment 9 (UBERON:6000030) that is part of some embryonic abdomen (UBERON:6000171)." [FBC:auto_generated_definition] synonym: "a9" RELATED [] -xref: FBbt:00000181 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000181 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000030 ! insect abdominal segment 9 is_a: UBERON:6000172 ! insect embryonic abdominal segment intersection_of: UBERON:6000030 ! insect abdominal segment 9 @@ -392761,7 +393810,7 @@ name: insect embryonic optic lobe primordium def: "Primordium of the insect embryo that gives rises to the embryonic/larval optic anlage." [ISBN:9783540570790] synonym: "optic lobe placode" RELATED [] synonym: "optic lobe primordium" RELATED [] -xref: FBbt:00000186 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000186 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001048 ! primordium relationship: dc-contributor https://orcid.org/0000-0001-9676-7393 relationship: dc-contributor https://orcid.org/0000-0002-7073-9172 @@ -392780,7 +393829,7 @@ id: UBERON:6001055 name: insect presumptive embryonic/larval nervous system def: "The sum of all the structures in the embryo that will develop into the embryonic/larval nervous system." [FlyBase:FBrf0031012] synonym: "embryonic nervous system" RELATED [FBC:DOS] -xref: FBbt:00001055 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001055 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007116 ! insect presumptive embryonic/larval system [Term] @@ -392788,7 +393837,7 @@ id: UBERON:6001056 name: insect presumptive embryonic/larval central nervous system def: "The sum of all the structures in the embryo that will develop into the embryonic/larval central nervous system." [FlyBase:FBrf0031012] synonym: "embryonic central nervous system" RELATED [FBC:DOS] -xref: FBbt:00001056 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001056 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007116 ! insect presumptive embryonic/larval system relationship: part_of UBERON:6001055 ! insect presumptive embryonic/larval nervous system @@ -392805,7 +393854,7 @@ name: insect visual primordium synonym: "optic lobe placode" RELATED [] synonym: "optic lobe primordium" RELATED [] synonym: "P2 VisSys" RELATED [FBC:DOS] -xref: FBbt:00001059 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001059 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:6025991 ! insect anterior ectoderm derivative @@ -392815,7 +393864,7 @@ relationship: part_of UBERON:0000922 ! embryo id: UBERON:6001060 name: insect embryonic brain def: "Brain of the embryo." [FBC:SPR] -xref: FBbt:00001060 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001060 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000955 ! brain relationship: part_of UBERON:6001056 ! insect presumptive embryonic/larval central nervous system @@ -392823,7 +393872,7 @@ relationship: part_of UBERON:6001056 ! insect presumptive embryonic/larval centr id: UBERON:6001135 name: insect proneural cluster def: "An equivalence group of the neurectoderm where all cells can, although only one will, become a neural progenitor cell." [FlyBase:FBrf0074477, FlyBase:FBrf0089570] -xref: FBbt:00001135 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001135 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0007688 ! anlage relationship: only_in_taxon NCBITaxon:50557 ! Insecta @@ -392831,7 +393880,7 @@ relationship: only_in_taxon NCBITaxon:50557 ! Insecta id: UBERON:6001648 name: insect embryonic imaginal precursor def: "Embryonic structure that will proliferate during larval development into a larval imaginal disc. During early embryogenesis the precursor is part of the epithelial sheet before segregating from the epithelial sheet by late embryogenesis (Bate and Martinez Arias, 1991)." [FlyBase:FBrf0053815, FlyBase:FBrf0064789] -xref: FBbt:00001648 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001648 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:6005023 ! insect imaginal precursor @@ -392840,7 +393889,7 @@ id: UBERON:6001649 name: insect imaginal disc primordium def: "Population of contiguous, morphologically distinct cells that will form an imaginal disc." [FBC:SPR] synonym: "imaginal disc specific anlage" RELATED [] -xref: FBbt:00001649 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001649 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001048 ! primordium is_a: UBERON:6001648 ! insect embryonic imaginal precursor relationship: develops_from UBERON:6005533 ! insect ventral epidermis primordium @@ -392851,7 +393900,7 @@ id: UBERON:6001650 name: insect labial disc primordium def: "Primordium that will form the labial disc." [FBC:SPR] synonym: "labial disc specific anlage" RELATED [] -xref: FBbt:00001650 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001650 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001649 ! insect imaginal disc primordium relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:6000165 ! insect embryonic labial segment @@ -392861,7 +393910,7 @@ id: UBERON:6001652 name: insect eye-antennal disc primordium def: "Primordium from which the eye-antennal disc develops." [FBC:SPR] synonym: "eye-antennal disc specific anlage" RELATED [] -xref: FBbt:00001652 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001652 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001649 ! insect imaginal disc primordium relationship: develops_from UBERON:6005533 ! insect ventral epidermis primordium relationship: part_of UBERON:0000922 ! embryo @@ -392871,7 +393920,7 @@ relationship: part_of UBERON:6000160 ! insect embryonic antennal segment id: UBERON:6001653 name: insect dorsal thoracic disc primordium synonym: "dorsal thoracic disc specific anlage" RELATED [] -xref: FBbt:00001653 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001653 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001649 ! insect imaginal disc primordium relationship: develops_from UBERON:6005533 ! insect ventral epidermis primordium relationship: part_of UBERON:0000922 ! embryo @@ -392881,7 +393930,7 @@ relationship: part_of UBERON:6000167 ! insect embryonic thoracic segment id: UBERON:6001655 name: insect dorsal mesothoracic disc primordium synonym: "dorsal mesothoracic disc specific anlage" RELATED [] -xref: FBbt:00001655 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001655 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001653 ! insect dorsal thoracic disc primordium relationship: develops_from UBERON:6005533 ! insect ventral epidermis primordium relationship: part_of UBERON:6000169 ! insect embryonic mesothoracic segment @@ -392890,7 +393939,7 @@ relationship: part_of UBERON:6000169 ! insect embryonic mesothoracic segment id: UBERON:6001656 name: insect dorsal metathoracic disc primordium synonym: "dorsal metathoracic disc specific anlage" RELATED [] -xref: FBbt:00001656 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001656 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001653 ! insect dorsal thoracic disc primordium relationship: develops_from UBERON:6005533 ! insect ventral epidermis primordium relationship: part_of UBERON:6000170 ! insect embryonic metathoracic segment @@ -392899,7 +393948,7 @@ relationship: part_of UBERON:6000170 ! insect embryonic metathoracic segment id: UBERON:6001657 name: insect ventral thoracic disc primordium synonym: "ventral thoracic disc specific anlage" RELATED [] -xref: FBbt:00001657 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001657 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001649 ! insect imaginal disc primordium relationship: develops_from UBERON:6005533 ! insect ventral epidermis primordium relationship: part_of UBERON:0000922 ! embryo @@ -392909,7 +393958,7 @@ relationship: part_of UBERON:6000167 ! insect embryonic thoracic segment id: UBERON:6001658 name: insect ventral prothoracic disc primordium synonym: "ventral prothoracic disc specific anlage" RELATED [] -xref: FBbt:00001658 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001658 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001657 ! insect ventral thoracic disc primordium relationship: develops_from UBERON:6005533 ! insect ventral epidermis primordium relationship: part_of UBERON:6000168 ! insect embryonic prothoracic segment @@ -392919,7 +393968,7 @@ id: UBERON:6001661 name: insect genital disc primordium def: "Primordium from which the genital disc develops." [FBC:SPR] synonym: "genital disc specific anlage" RELATED [] -xref: FBbt:00001661 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001661 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001649 ! insect imaginal disc primordium relationship: develops_from UBERON:6005533 ! insect ventral epidermis primordium relationship: part_of UBERON:0000922 ! embryo @@ -392929,7 +393978,7 @@ id: UBERON:6001662 name: insect male genital disc primordium def: "Primordium from which the male genital disc derives." [FBC:SPR] synonym: "male genital disc specific anlage" RELATED [] -xref: FBbt:00001662 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001662 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001661 ! insect genital disc primordium relationship: develops_from UBERON:6005533 ! insect ventral epidermis primordium relationship: part_of UBERON:6000181 ! insect embryonic abdominal segment 9 @@ -392939,7 +393988,7 @@ id: UBERON:6001663 name: insect female genital disc primordium def: "Primordium from which the female genital disc derives." [FBC:SPR] synonym: "female genital disc specific anlage" RELATED [] -xref: FBbt:00001663 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001663 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001661 ! insect genital disc primordium relationship: develops_from UBERON:6005533 ! insect ventral epidermis primordium relationship: part_of UBERON:6000180 ! insect embryonic abdominal segment 8 @@ -392949,7 +393998,7 @@ id: UBERON:6001664 name: insect embryonic/larval circulatory system def: "Tubular system of the embryo/larva through which hemolymph flows." [FlyBase:FBrf0031012] synonym: "larval circulatory system" EXACT [] -xref: FBbt:00001664 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001664 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001009 ! circulatory system relationship: only_in_taxon NCBITaxon:50557 ! Insecta relationship: part_of UBERON:0000323 ! late embryo @@ -392961,7 +394010,7 @@ name: insect embryonic/larval lymph gland def: "Hematopoietic organ of the larva, located along the dorsal vessel, behind the brain. It produces the plasmatocytes, crystal cells and lamellocytes which are released at the end of the larval instar and onset of metamorphosis. It is composed of 3 pairs of bilateral lobes: an anterior primary lobe, a posterior secondary lobe and the most posterior lobe (or multiple lobes), the tertiary lobe. Each lobe is separated by pericardial cells. In the late embryo, the lymph gland consists of a single pair of lobes (primary lobes) containing around 20 cells each that flank the dorsal vessel. By the second larval instar, the lymph gland is composed of two or three new pairs of posterior lobes, and the primary lobes have increased in size to contain around 200 cells. During the first and early second larval instars, the lymph gland comprises only the hematopoietic progenitor population. The lymph gland increases in size ten-fold by the late third instar, and at this stage the progenitor cells (prohemocytes) become restricted to the medial region (medullary zone) of the primary lobe and become quiescent. The differentiated hemocytes are found in the periphery (cortical zone) of the primary lobe and these cells proliferate extensively. The posterior signalling center is a group of about 30 cells at the posterior tip of the primary lobe that secretes several signalling molecules and functions as a stem-cell niche. The secondary and tertiary lobes contain prohemocytes, and rarely a differentiated cell. Lymph glands are eliminated at metamorphosis." [FlyBase:FBrf0031001, FlyBase:FBrf0032406, FlyBase:FBrf0074444, FlyBase:FBrf0155787, FlyBase:FBrf0162082, FlyBase:FBrf0187467] synonym: "embryonic/larval hematopoietic organ" EXACT [FlyBase:FBrf0074444] synonym: "hematopoietic organ" EXACT [] -xref: FBbt:00001668 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001668 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: develops_from UBERON:6000132 ! insect mesodermal crest of segment T3 @@ -392973,7 +394022,7 @@ relationship: part_of UBERON:6001664 ! insect embryonic/larval circulatory syste id: UBERON:6001722 name: insect ring gland def: "A closely associated cluster of three neuroendocrine glands located anterior to the aorta and dorsal to the esophagus. At embryonic stage 17 and in larva it is found anterior to the brain and is formed by the corpus cardiacum ventrally, the prothoracic gland laterally and the corpus allatum dorsally. The adult ring gland is located anterior to the proventriculus and is formed by the corpus cardiacum ventrally, the corpus allatum dorsally and the hypocerebral ganglion posterior to the corpus cardiacum. It is innervated by neurons of the nervus corporis cardiaci (NccI-III)." [FlyBase:FBrf0064803, FlyBase:FBrf0089570, FlyBase:FBrf0179777, PMID:12966498] -xref: FBbt:00001722 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001722 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000477 ! anatomical cluster relationship: capable_of GO:0046879 ! hormone secretion relationship: in_taxon NCBITaxon:6656 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Arthropoda @@ -392983,7 +394032,7 @@ relationship: only_in_taxon NCBITaxon:50557 ! Insecta id: UBERON:6001728 name: insect larval tagma def: "Any tagma (UBERON:6000002) that is part of some larva (UBERON:6001727)." [FBC:auto_generated_definition] -xref: FBbt:00001728 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001728 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000002 ! arthropod tagma intersection_of: UBERON:6000002 ! arthropod tagma intersection_of: part_of UBERON:0002548 ! larva @@ -392993,7 +394042,7 @@ relationship: part_of UBERON:0002548 ! larva id: UBERON:6001729 name: insect larval segment def: "Any segment that is part of some larva." [FBC:auto_generated_definition] -xref: FBbt:00001729 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001729 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000914 ! organismal segment intersection_of: UBERON:0000914 ! organismal segment intersection_of: only_in_taxon NCBITaxon:50557 ! Insecta @@ -393006,7 +394055,7 @@ relationship: part_of UBERON:0002548 ! larva id: UBERON:6001730 name: insect larval head def: "Any head that is part of some larva." [FBC:auto_generated_definition] -xref: FBbt:00001730 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001730 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000033 ! head intersection_of: UBERON:0000033 ! head intersection_of: only_in_taxon NCBITaxon:50557 ! Insecta @@ -393019,7 +394068,7 @@ id: UBERON:6001731 name: insect larval ocular segment def: "Any ocular segment (UBERON:6000005) that is part of some larval head (UBERON:6001730)." [FBC:auto_generated_definition] synonym: "larval acron" RELATED [] -xref: FBbt:00001731 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001731 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000005 ! insect ocular segment is_a: UBERON:6001729 ! insect larval segment is_a: UBERON:6001733 ! insect larval procephalic segment @@ -393031,7 +394080,7 @@ relationship: part_of UBERON:6001730 ! insect larval head id: UBERON:6001732 name: insect larval head segment def: "Any segment that is part of some larval head." [FBC:auto_generated_definition] -xref: FBbt:00001732 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001732 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000006 ! insect head segment intersection_of: UBERON:0000914 ! organismal segment intersection_of: part_of UBERON:6001730 ! insect larval head @@ -393041,7 +394090,7 @@ relationship: part_of UBERON:6001730 ! insect larval head id: UBERON:6001733 name: insect larval procephalic segment def: "Any procephalic segment (UBERON:6000007) that is part of some larval head (UBERON:6001730)." [FBC:auto_generated_definition] -xref: FBbt:00001733 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001733 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000007 ! procephalic segment is_a: UBERON:6001732 ! insect larval head segment intersection_of: UBERON:6000007 ! procephalic segment @@ -393052,7 +394101,7 @@ relationship: part_of UBERON:6001730 ! insect larval head id: UBERON:6001734 name: insect larval labral segment def: "Any labral segment (UBERON:6000008) that is part of some larval head (UBERON:6001730)." [FBC:auto_generated_definition] -xref: FBbt:00001734 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001734 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000008 ! labral segment is_a: UBERON:6001733 ! insect larval procephalic segment intersection_of: UBERON:6000008 ! labral segment @@ -393063,7 +394112,7 @@ relationship: part_of UBERON:6001730 ! insect larval head id: UBERON:6001735 name: insect larval antennal segment def: "Any antennal segment (UBERON:6000009) that is part of some larval head (UBERON:6001730)." [FBC:auto_generated_definition] -xref: FBbt:00001735 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001735 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000009 ! antennal segment is_a: UBERON:6001733 ! insect larval procephalic segment intersection_of: UBERON:6000009 ! antennal segment @@ -393074,7 +394123,7 @@ relationship: part_of UBERON:6001730 ! insect larval head id: UBERON:6001737 name: insect larval gnathal segment def: "Any gnathal segment (UBERON:6000011) that is part of some larval head (UBERON:6001730)." [FBC:auto_generated_definition] -xref: FBbt:00001737 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001737 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000011 ! insect gnathal segment is_a: UBERON:6001732 ! insect larval head segment intersection_of: UBERON:6000011 ! insect gnathal segment @@ -393085,7 +394134,7 @@ relationship: part_of UBERON:6001730 ! insect larval head id: UBERON:6001740 name: insect larval labial segment def: "Any labial segment (UBERON:6000014) that is part of some larval head (UBERON:6001730)." [FBC:auto_generated_definition] -xref: FBbt:00001740 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001740 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000014 ! insect labial segment is_a: UBERON:6001737 ! insect larval gnathal segment intersection_of: UBERON:6000014 ! insect labial segment @@ -393096,7 +394145,7 @@ relationship: part_of UBERON:6001730 ! insect larval head id: UBERON:6001741 name: insect larval thorax def: "Any thorax (UBERON:6000015) that is part of some larva (UBERON:6001727)." [FBC:auto_generated_definition] -xref: FBbt:00001741 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001741 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000015 ! insect thorax is_a: UBERON:6001728 ! insect larval tagma intersection_of: UBERON:6000015 ! insect thorax @@ -393107,7 +394156,7 @@ relationship: part_of UBERON:0002548 ! larva id: UBERON:6001742 name: insect larval thoracic segment def: "Any segment (UBERON:6000003) that is part of some larval thorax (UBERON:6001741)." [FBC:auto_generated_definition] -xref: FBbt:00001742 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001742 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000016 ! insect thoracic segment is_a: UBERON:6001729 ! insect larval segment intersection_of: UBERON:0000914 ! organismal segment @@ -393121,7 +394170,7 @@ def: "Any prothoracic segment (UBERON:6000017) that is part of some larval thora synonym: "prothorax" RELATED [] synonym: "t1" RELATED [] synonym: "thoracic segment 1" RELATED [] -xref: FBbt:00001743 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001743 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000017 ! insect prothoracic segment is_a: UBERON:6001742 ! insect larval thoracic segment intersection_of: UBERON:6000017 ! insect prothoracic segment @@ -393135,7 +394184,7 @@ def: "Any mesothoracic segment (UBERON:6000018) that is part of some larval thor synonym: "mesothorax" RELATED [] synonym: "t2" RELATED [] synonym: "thoracic segment 2" RELATED [] -xref: FBbt:00001744 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001744 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000018 ! insect mesothoracic segment is_a: UBERON:6001742 ! insect larval thoracic segment intersection_of: UBERON:6000018 ! insect mesothoracic segment @@ -393149,7 +394198,7 @@ def: "Any metathoracic segment (UBERON:6000019) that is part of some larval thor synonym: "metathorax" RELATED [] synonym: "t3" RELATED [] synonym: "thoracic segment 3" RELATED [] -xref: FBbt:00001745 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001745 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000019 ! insect metathoracic segment is_a: UBERON:6001742 ! insect larval thoracic segment intersection_of: UBERON:6000019 ! insect metathoracic segment @@ -393160,7 +394209,7 @@ relationship: part_of UBERON:6001741 ! insect larval thorax id: UBERON:6001746 name: insect larval abdomen def: "Any abdomen (UBERON:6000020) that is part of some larva (UBERON:6001727)." [FBC:auto_generated_definition] -xref: FBbt:00001746 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001746 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000020 ! insect abdomen is_a: UBERON:6001728 ! insect larval tagma intersection_of: UBERON:6000020 ! insect abdomen @@ -393171,7 +394220,7 @@ relationship: part_of UBERON:0002548 ! larva id: UBERON:6001747 name: insect larval abdominal segment def: "Any segment (UBERON:6000003) that is part of some larval abdomen (UBERON:6001746)." [FBC:auto_generated_definition] -xref: FBbt:00001747 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001747 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000021 ! insect abdominal segment is_a: UBERON:6001729 ! insect larval segment intersection_of: UBERON:0000914 ! organismal segment @@ -393183,7 +394232,7 @@ id: UBERON:6001755 name: insect larval abdominal segment 8 def: "Any abdominal segment 8 (UBERON:6000029) that is part of some larval abdomen (UBERON:6001746)." [FBC:auto_generated_definition] synonym: "a8" RELATED [] -xref: FBbt:00001755 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001755 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000029 ! insect abdominal segment 8 is_a: UBERON:6001747 ! insect larval abdominal segment intersection_of: UBERON:6000029 ! insect abdominal segment 8 @@ -393195,7 +394244,7 @@ id: UBERON:6001756 name: insect larval abdominal segment 9 def: "Any abdominal segment 9 (UBERON:6000030) that is part of some larval abdomen (UBERON:6001746)." [FBC:auto_generated_definition] synonym: "a9" RELATED [] -xref: FBbt:00001756 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001756 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000030 ! insect abdominal segment 9 is_a: UBERON:6001747 ! insect larval abdominal segment intersection_of: UBERON:6000030 ! insect abdominal segment 9 @@ -393207,7 +394256,7 @@ id: UBERON:6001760 name: insect embryonic/larval imaginal precursor def: "Imaginal precursor that is part of the embryo/larva." [FBC:SPR] synonym: "larval imaginal precursor" EXACT [] -xref: FBbt:00001760 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001760 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6005023 ! insect imaginal precursor relationship: part_of UBERON:0002548 ! larva relationship: part_of UBERON:0003142 ! prepupa @@ -393217,7 +394266,7 @@ relationship: part_of UBERON:0003143 ! pupa id: UBERON:6001764 name: insect labial disc def: "Imaginal disc that, in the adult, gives rise to the proboscis, including the prementum, prestomal cavity, labellum, labellar cap and pseudotrachea (Cohen, 1993)." [FlyBase:FBrf0033866, FlyBase:FBrf0064789] -xref: FBbt:00001764 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001764 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000939 ! imaginal disc is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:6001650 ! insect labial disc primordium @@ -393228,7 +394277,7 @@ id: UBERON:6001765 name: insect clypeo-labral disc def: "Imaginal disc that in the adults gives rise to the labrum, anterior and posterior cibarial plates, fish trap bristles, epipharyngeal sclerite and clypeus (Cohen, 1993)." [FlyBase:FBrf0064789] synonym: "clypeolabral disc" EXACT [] -xref: FBbt:00001765 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001765 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000939 ! imaginal disc is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:6005514 ! insect adult clypeo-labral primordium @@ -393238,7 +394287,7 @@ relationship: part_of UBERON:6001734 ! insect larval labral segment id: UBERON:6001766 name: insect eye-antennal disc def: "Imaginal disc that, in the adults, gives rise to the eye, antenna, head capsule (including all bristles and external membranes) and the maxillary palps (Cohen, 1993)." [FlyBase:FBrf0064789] -xref: FBbt:00001766 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001766 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000939 ! imaginal disc is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:6001652 ! insect eye-antennal disc primordium @@ -393247,7 +394296,7 @@ relationship: develops_from UBERON:6001652 ! insect eye-antennal disc primordium id: UBERON:6001767 name: insect antennal disc def: "Posterior portion of the eye-antennal disc. It gives rise to the adult antennal segments and the maxillary palp, as well as contributing to the head capsule." [FlyBase:FBrf0064789] -xref: FBbt:00001767 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001767 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000939 ! imaginal disc is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:6001735 ! insect larval antennal segment @@ -393258,7 +394307,7 @@ id: UBERON:6001776 name: insect dorsal thoracic disc def: "Imaginal disc that is a precursor of dorsal thoracic structures of the adult." [FlyBase:FBrf0064789, FlyBase:FBrf0064803] synonym: "dorsal thoracic disk" EXACT [] -xref: FBbt:00001776 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001776 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000939 ! imaginal disc is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:6001653 ! insect dorsal thoracic disc primordium @@ -393269,7 +394318,7 @@ id: UBERON:6001778 name: insect wing disc def: "Dorsal imaginal disc of the mesothorax. Precursor of dorsal mesothoracic structures of the adult including the postnotum, scutum, scutellum, wing, wing hinge and part of the notal pleura." [FlyBase:FBrf0064789] synonym: "dorsal mesothoracic disc" EXACT [] -xref: FBbt:00001778 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001778 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001776 ! insect dorsal thoracic disc relationship: develops_from UBERON:6001655 ! insect dorsal mesothoracic disc primordium relationship: part_of UBERON:6001744 ! insect larval mesothoracic segment @@ -393279,7 +394328,7 @@ id: UBERON:6001779 name: insect haltere disc def: "Dorsal imaginal disc of the metathorax. Precursor of structure of the adult dorsal metathorax including the haltere." [FlyBase:FBrf0064789] synonym: "dorsal metathoracic disc" EXACT [] -xref: FBbt:00001779 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001779 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001776 ! insect dorsal thoracic disc relationship: develops_from UBERON:6001656 ! insect dorsal metathoracic disc primordium relationship: part_of UBERON:6001745 ! insect larval metathoracic segment @@ -393290,7 +394339,7 @@ name: insect ventral thoracic disc def: "Imaginal disc that is a precursor of ventral thoracic structures of the adult." [FlyBase:FBrf0064789, FlyBase:FBrf0064803] synonym: "leg disc" RELATED [] synonym: "ventral thoracic disk" EXACT [] -xref: FBbt:00001780 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001780 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000939 ! imaginal disc is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:6001657 ! insect ventral thoracic disc primordium @@ -393303,7 +394352,7 @@ def: "Imaginal disc of the ventral prothoracic segment. Precursor of structures synonym: "1st leg disc" EXACT [] synonym: "T1 leg disc" EXACT [] synonym: "ventral prothoracic disc" EXACT [] -xref: FBbt:00001781 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001781 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001780 ! insect ventral thoracic disc relationship: develops_from UBERON:6001658 ! insect ventral prothoracic disc primordium relationship: part_of UBERON:6001743 ! insect larval prothoracic segment @@ -393312,7 +394361,7 @@ relationship: part_of UBERON:6001743 ! insect larval prothoracic segment id: UBERON:6001784 name: insect genital disc def: "Imaginal disc that gives rise to the internal and external genitalia, analia and adult hind gut (Cohen, 1993)." [FlyBase:FBrf0064789] -xref: FBbt:00001784 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001784 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000939 ! imaginal disc is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:6001661 ! insect genital disc primordium @@ -393321,7 +394370,7 @@ relationship: develops_from UBERON:6001661 ! insect genital disc primordium id: UBERON:6001785 name: insect male genital disc def: "Genital disc that gives rise to the penis and external genitalia, sperm pump, ejaculatory duct, paragonia and vas deferens, anal plates and adult hindgut (Cohen, 1993)." [FlyBase:FBrf0064789] -xref: FBbt:00001785 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001785 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001784 ! insect genital disc relationship: develops_from UBERON:6001662 ! insect male genital disc primordium relationship: part_of UBERON:6001747 ! insect larval abdominal segment @@ -393330,7 +394379,7 @@ relationship: part_of UBERON:6001747 ! insect larval abdominal segment id: UBERON:6001787 name: insect female genital disc def: "Genital disc that gives rise to the vagina and vaginal plates, uterus, parovaria, spermatheca, seminal recepticle, oviducts, female analia and hindgut. (Cohen, 1993)." [FlyBase:FBrf0064789] -xref: FBbt:00001787 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001787 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001784 ! insect genital disc relationship: develops_from UBERON:6001663 ! insect female genital disc primordium relationship: part_of UBERON:6001747 ! insect larval abdominal segment @@ -393347,7 +394396,7 @@ replaced_by: CL:0000373 id: UBERON:6001790 name: insect histoblast nest def: "One of several groups of cells in the larval abdomen that gives rise to the adult external abdomen." [FBC:gg] -xref: FBbt:00001790 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001790 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001760 ! insect embryonic/larval imaginal precursor relationship: part_of UBERON:6001747 ! insect larval abdominal segment @@ -393380,7 +394429,7 @@ id: UBERON:6001842 name: insect embryonic/larval digestive system def: "Digestive system of the insect embryo or larva." [ISBN:9780879698287, ISBN:9780879698997] synonym: "larval digestive system" EXACT [] -xref: FBbt:00001842 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001842 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001007 ! digestive system relationship: only_in_taxon NCBITaxon:50557 ! Insecta relationship: part_of UBERON:0002548 ! larva @@ -393392,7 +394441,7 @@ def: "A group of connected sclerites of the anterior embryonic/larval digestive synonym: "cephalo-pharyngeal skeleton" EXACT [FlyBase:FBrf0045366] synonym: "larval head skeleton" EXACT [FlyBase:FBrf0205317] synonym: "mouth parts" EXACT [] -xref: FBbt:00001845 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001845 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007245 ! insect cuticular specialization relationship: part_of UBERON:0008816 ! embryonic head relationship: part_of UBERON:6001730 ! insect larval head @@ -393403,7 +394452,7 @@ id: UBERON:6001848 name: insect epipharyngeal sclerite def: "Unpaired sclerite to which the median tooth (labrum) posteriorly merges, and bears the cuticular pores of the labral sense organ." [FlyBase:FBrf0045366] synonym: "epistomal sclerite" EXACT [FlyBase:FBrf0045366] -xref: FBbt:00001848 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001848 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007245 ! insect cuticular specialization relationship: part_of UBERON:6001845 ! insect cephalopharyngeal skeleton @@ -393412,7 +394461,7 @@ id: UBERON:6001911 name: insect embryonic/larval nervous system def: "Nervous system of the embryo/larva." [FlyBase:FBrf0045359, FlyBase:FBrf0075072, FlyBase:FBrf0105282] synonym: "larval nervous system" EXACT [] -xref: FBbt:00001911 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001911 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001016 ! nervous system relationship: only_in_taxon NCBITaxon:50557 ! Insecta relationship: part_of UBERON:0000323 ! late embryo @@ -393423,7 +394472,7 @@ id: UBERON:6001919 name: insect embryonic/larval central nervous system def: "Central nervous system of the embryo/larva." [FBC:SPR] synonym: "larval central nervous system" EXACT [] -xref: FBbt:00001919 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001919 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001017 ! central nervous system relationship: part_of UBERON:6001911 ! insect embryonic/larval nervous system @@ -393433,7 +394482,7 @@ name: insect embryonic/larval brain def: "Brain of the embryo/larva." [FBC:SPR] synonym: "larval brain" NARROW [] synonym: "larval supraesophageal ganglion" NARROW [] -xref: FBbt:00001920 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001920 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000955 ! brain is_a: UBERON:0003339 ! ganglion of central nervous system relationship: develops_from UBERON:6001060 ! insect embryonic brain @@ -393445,7 +394494,7 @@ id: UBERON:6001925 name: insect embryonic/larval protocerebrum def: "Protocerebrum of the embryo/larva." [FBC:SPR] synonym: "larval protocerebrum" RELATED [] -xref: FBbt:00001925 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001925 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6003627 ! insect protocerebrum relationship: part_of UBERON:6001734 ! insect larval labral segment relationship: part_of UBERON:6001920 ! insect embryonic/larval brain @@ -393455,7 +394504,7 @@ id: UBERON:6002639 name: insect larval sense organ def: "Any sense organ that is part of some larva." [FBC:auto_generated_definition] synonym: "larval sense organ" EXACT [] -xref: FBbt:00002639 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00002639 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000020 ! sense organ intersection_of: UBERON:0000020 ! sense organ intersection_of: only_in_taxon NCBITaxon:50557 ! Insecta @@ -393468,7 +394517,7 @@ id: UBERON:6002642 name: insect embryonic/larval ocular segment sensillum def: "Any embryonic/larval sense organ (UBERON:6002639) that is part of some larval ocular segment (UBERON:6001731)." [FBC:auto_generated_definition] synonym: "larval ocular segment sensillum" EXACT [] -xref: FBbt:00002642 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00002642 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007280 ! insect embryonic/larval head sense organ intersection_of: UBERON:6002639 ! insect larval sense organ intersection_of: part_of UBERON:6001731 ! insect larval ocular segment @@ -393478,7 +394527,7 @@ relationship: part_of UBERON:6001731 ! insect larval ocular segment id: UBERON:6003005 name: insect adult tagma def: "Any tagma (UBERON:6000002) that is part of some adult (UBERON:6003004)." [FBC:auto_generated_definition] -xref: FBbt:00003005 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003005 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000002 ! arthropod tagma intersection_of: UBERON:6000002 ! arthropod tagma intersection_of: part_of UBERON:0007023 ! adult organism @@ -393487,7 +394536,7 @@ relationship: part_of UBERON:0007023 ! adult organism [Term] id: UBERON:6003006 name: insect adult segment -xref: FBbt:00003006 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003006 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000914 ! organismal segment intersection_of: UBERON:0000914 ! organismal segment intersection_of: only_in_taxon NCBITaxon:50557 ! Insecta @@ -393500,7 +394549,7 @@ relationship: part_of UBERON:0007023 ! adult organism id: UBERON:6003007 name: insect adult head def: "Head of the adult organism." [FBC:SPR] -xref: FBbt:00003007 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003007 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000004 ! panarthropod head is_a: UBERON:6003005 ! insect adult tagma intersection_of: UBERON:0000033 ! head @@ -393513,7 +394562,7 @@ relationship: part_of UBERON:0007023 ! adult organism id: UBERON:6003009 name: insect adult head segment def: "Segment of the adult head." [FlyBase:FBrf0064788] -xref: FBbt:00003009 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003009 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000006 ! insect head segment is_a: UBERON:6003006 ! insect adult segment intersection_of: UBERON:0000914 ! organismal segment @@ -393524,7 +394573,7 @@ relationship: part_of UBERON:6003007 ! insect adult head id: UBERON:6003010 name: insect adult procephalic segment def: "Any procephalic segment (UBERON:6000007) that is part of some adult head (UBERON:6003007)." [FBC:auto_generated_definition] -xref: FBbt:00003010 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003010 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000007 ! procephalic segment is_a: UBERON:6003009 ! insect adult head segment intersection_of: UBERON:6000007 ! procephalic segment @@ -393535,7 +394584,7 @@ relationship: part_of UBERON:6003007 ! insect adult head id: UBERON:6003011 name: insect adult labral segment def: "Any labral segment (UBERON:6000008) that is part of some adult head (UBERON:6003007)." [FBC:auto_generated_definition] -xref: FBbt:00003011 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003011 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000008 ! labral segment is_a: UBERON:6003010 ! insect adult procephalic segment intersection_of: UBERON:6000008 ! labral segment @@ -393547,7 +394596,7 @@ id: UBERON:6003012 name: insect adult antennal segment def: "Any antennal segment (UBERON:6000009) that is part of some adult head (UBERON:6003007)." [FBC:auto_generated_definition] synonym: "adult antennal structure" EXACT [] -xref: FBbt:00003012 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003012 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000009 ! antennal segment is_a: UBERON:6003010 ! insect adult procephalic segment intersection_of: UBERON:6000009 ! antennal segment @@ -393558,7 +394607,7 @@ relationship: part_of UBERON:6003007 ! insect adult head id: UBERON:6003018 name: insect adult thorax def: "Thorax of the adult." [FlyBase:FBim0000792] -xref: FBbt:00003018 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003018 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000015 ! insect thorax is_a: UBERON:6003005 ! insect adult tagma intersection_of: UBERON:6000015 ! insect thorax @@ -393569,7 +394618,7 @@ relationship: part_of UBERON:0007023 ! adult organism id: UBERON:6003019 name: insect adult thoracic segment def: "Any segment (UBERON:6000003) that is part of some adult thorax (UBERON:6003018)." [FBC:auto_generated_definition] -xref: FBbt:00003019 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003019 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000016 ! insect thoracic segment is_a: UBERON:6003006 ! insect adult segment intersection_of: UBERON:0000914 ! organismal segment @@ -393583,7 +394632,7 @@ def: "Any prothoracic segment (UBERON:6000017) that is part of some adult thorax synonym: "prothorax" EXACT [] synonym: "t1" EXACT [] synonym: "thoracic segment 1" EXACT [] -xref: FBbt:00003020 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003020 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000017 ! insect prothoracic segment is_a: UBERON:6003019 ! insect adult thoracic segment intersection_of: UBERON:6000017 ! insect prothoracic segment @@ -393597,7 +394646,7 @@ def: "Any mesothoracic segment (UBERON:6000018) that is part of some adult thora synonym: "mesothorax" EXACT [] synonym: "t2" EXACT [] synonym: "thoracic segment 2" EXACT [] -xref: FBbt:00003021 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003021 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000018 ! insect mesothoracic segment is_a: UBERON:6003019 ! insect adult thoracic segment intersection_of: UBERON:6000018 ! insect mesothoracic segment @@ -393608,7 +394657,7 @@ relationship: part_of UBERON:6003018 ! insect adult thorax id: UBERON:6003023 name: insect adult abdomen def: "Abdomen of the adult." [FlyBase:FBim0000809, FlyBase:FBim0000810] -xref: FBbt:00003023 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003023 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000020 ! insect abdomen is_a: UBERON:6003005 ! insect adult tagma intersection_of: UBERON:6000020 ! insect abdomen @@ -393619,7 +394668,7 @@ relationship: part_of UBERON:0007023 ! adult organism id: UBERON:6003024 name: insect adult abdominal segment def: "Any abdominal segment (UBERON:6000021) that is part of some adult abdomen (UBERON:6003023)." [FBC:auto_generated_definition] -xref: FBbt:00003024 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003024 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000021 ! insect abdominal segment is_a: UBERON:6003006 ! insect adult segment intersection_of: UBERON:6000021 ! insect abdominal segment @@ -393631,7 +394680,7 @@ id: UBERON:6003039 name: dorsal trunk of insect trachea def: "Longitudinal tracheal branch of the insect tracheal system, dorsal to the lateral trunk." [FBbt:00005043] synonym: "dorsal trunk" BROAD SENSU [NCBITaxon:50557] -xref: FBbt:00003039 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003039 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6005043 ! insect trachea [Term] @@ -393646,7 +394695,7 @@ relationship: part_of UBERON:0007023 ! adult organism id: UBERON:6003259 name: insect adult somatic muscle def: "Muscle attached to the inner surface of the adult body wall, extending between articulated or flexibly joined areas, that serves to move the parts of the exoskeleton." [FlyBase:FBrf0007735] -xref: FBbt:00003259 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003259 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0005090 ! muscle structure intersection_of: UBERON:0005090 ! muscle structure intersection_of: part_of UBERON:6003218 ! insect adult muscle system @@ -393656,7 +394705,7 @@ relationship: part_of UBERON:6003218 ! insect adult muscle system id: UBERON:6003559 name: insect adult nervous system def: "Nervous system of the adult insect." [ISBN:978-087969828-7] -xref: FBbt:00003559 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003559 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001016 ! nervous system relationship: only_in_taxon NCBITaxon:50557 ! Insecta relationship: part_of UBERON:0007023 ! adult organism @@ -393665,7 +394714,7 @@ relationship: part_of UBERON:0007023 ! adult organism id: UBERON:6003623 name: insect adult central nervous system def: "Central nervous system of the adult." [FBC:SPR] -xref: FBbt:00003623 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003623 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001017 ! central nervous system relationship: part_of UBERON:6003559 ! insect adult nervous system @@ -393673,7 +394722,7 @@ relationship: part_of UBERON:6003559 ! insect adult nervous system id: UBERON:6003624 name: insect adult brain def: "Brain of the adult." [FBC:SPR] -xref: FBbt:00003624 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003624 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000955 ! brain relationship: part_of UBERON:6003007 ! insect adult head relationship: part_of UBERON:6003623 ! insect adult central nervous system @@ -393683,7 +394732,7 @@ id: UBERON:6003626 name: insect supraesophageal ganglion def: "The pre-oral neuropils of the brain located above and some of it below the esophagus, comprising three fused ganglia (protocerebrum, deutocerebrum, and tritocerebrum) in the head." [FlyBase:FBrf0224194, http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] synonym: "SPG" RELATED [] -xref: FBbt:00003626 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003626 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0003339 ! ganglion of central nervous system relationship: develops_from UBERON:6001920 ! insect embryonic/larval brain relationship: part_of UBERON:0000955 ! brain @@ -393693,7 +394742,7 @@ id: UBERON:6003627 name: insect protocerebrum def: "The most anterior of the segmental subdivisions of the insect CNS; thought to represent the first pre-oral segment of the brain. The protocerebrum comprises many discrete neuropil regions including the central body complex and mushroom bodies." [http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] synonym: "protocerebral neuromere" EXACT [FlyBase:FBrf0092819] -xref: FBbt:00003627 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003627 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004732 ! segmental subdivision of nervous system relationship: part_of UBERON:6000008 ! labral segment @@ -393707,7 +394756,7 @@ synonym: "adult central body complex" EXACT [] synonym: "central body" RELATED [] synonym: "central body complex" RELATED [] synonym: "CX" EXACT BRAIN_NAME_ABV [FlyBase:FBrf0224194] -xref: FBbt:00003632 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003632 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6041000 ! insect synaptic neuropil block relationship: develops_from UBERON:6007070 ! insect centro-posterior medial synaptic neuropil domain relationship: part_of UBERON:6007145 ! insect adult protocerebrum @@ -393727,7 +394776,7 @@ name: insect sex comb def: "A row of darkly pigmented, male specific chaetae located on the prothoracic metatarsal segment of the prothoracic leg. The number of chaetae (teeth) per sex comb varies between individuals, e.g.- Hannah-Alava and Stern report 10-13." [FlyBase:FBrf0011482, FlyBase:FBrf0012178] synonym: "ctenidium" EXACT [FlyBase:FBrf0012178] synonym: "metatarsal comb" EXACT [] -xref: FBbt:00004296 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004296 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6100153 ! insect sensilla row relationship: part_of UBERON:6007020 ! insect metatarsus of male prothoracic leg @@ -393736,7 +394785,7 @@ id: UBERON:6004340 name: insect wing hair def: "The posteriorly oriented trichome of a cell of the wing blade. Each cell makes one of these trichomes at its posterior vertex." [FBC:DOS] synonym: "wing trichome" RELATED [] -xref: FBbt:00004340 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004340 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6004979 ! insect trichome relationship: part_of UBERON:0000984 ! imaginal disc-derived wing @@ -393746,7 +394795,7 @@ name: insect sclerite def: "A region of integument whose external cuticular part is a hard, sclerotized plate." [FBC:gg] synonym: "integumentary plate" EXACT [] synonym: "plate" RELATED [] -xref: FBbt:00004475 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004475 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007284 ! insect region of integument [Term] @@ -393754,7 +394803,7 @@ id: UBERON:6004476 name: insect tergite def: "The dorsal plate (sclerite) of an adult abdominal segment." [FlyBase:FBrf0007734, FlyBase:FBrf0111704] synonym: "abdominal tergite" EXACT [] -xref: FBbt:00004476 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004476 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6004475 ! insect sclerite relationship: develops_from UBERON:6001790 ! insect histoblast nest relationship: part_of UBERON:6003024 ! insect adult abdominal segment @@ -393765,13 +394814,13 @@ id: UBERON:6004477 name: insect sternite def: "An adult ventral sclerite." [FlyBase:FBrf0007734, FlyBase:FBrf0111704] synonym: "abdominal sternite" EXACT [] -xref: FBbt:00004477 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004477 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6004475 ! insect sclerite [Term] id: UBERON:6004481 name: insect adult external head -xref: FBbt:00004481 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004481 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007289 ! insect tagmatic subdivision of integument relationship: part_of UBERON:6003007 ! insect adult head relationship: part_of UBERON:6005396 ! insect adult integumentary system @@ -393781,7 +394830,7 @@ id: UBERON:6004519 name: insect arista def: "Highly specialised, slender sixth segment of the antenna covered in bristle-like outgrowths known as laterals. It extends laterally from the dorsal region of the third segment of the antenna." [FlyBase:FBrf0007734, FlyBase:FBrf0031004, FlyBase:FBrf0137012] synonym: "segment 6" EXACT [] -xref: FBbt:00004519 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004519 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:6007149 ! segment of antenna relationship: develops_from UBERON:6110811 ! insect presumptive arista @@ -393790,7 +394839,7 @@ relationship: part_of UBERON:0000972 ! antenna [Term] id: UBERON:6004520 name: insect mouthpart -xref: FBbt:00004520 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004520 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0010000 ! multicellular anatomical structure relationship: part_of UBERON:6004481 ! insect adult external head @@ -393798,7 +394847,7 @@ relationship: part_of UBERON:6004481 ! insect adult external head id: UBERON:6004521 name: insect clypeus def: "The anterior part of the head between the frons and the labrum, which occasionally may fuse with either one to form the frontoclypeus and the clypeolabrum. In the context of Drosophila refers to a round structure on the center of the frontal adult external head." [FBC:gg, FlyBase:FBrf0166419] -xref: FBbt:00004521 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004521 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:6004475 ! insect sclerite relationship: develops_from UBERON:6001765 ! insect clypeo-labral disc @@ -393808,7 +394857,7 @@ relationship: part_of UBERON:6004540 ! insect basiproboscis id: UBERON:6004535 name: insect proboscis def: "The trunk-like extension of adult head, forming a protrusible sucking proboscis for the ingestion of liquid food (pg 425 Miller et al., 1950; pg 383, Ferris et al., 1950)." [FlyBase:FBrf0007734, FlyBase:FBrf0007735] -xref: FBbt:00004535 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004535 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000475 ! organism subdivision is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:6001764 ! insect labial disc @@ -393817,7 +394866,7 @@ relationship: part_of UBERON:6004520 ! insect mouthpart [Term] id: UBERON:6004540 name: insect basiproboscis -xref: FBbt:00004540 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004540 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0010000 ! multicellular anatomical structure relationship: part_of UBERON:6004520 ! insect mouthpart @@ -393825,7 +394874,7 @@ relationship: part_of UBERON:6004520 ! insect mouthpart id: UBERON:6004551 name: insect adult external thorax def: "External structures that make up the adult insect thorax." [ISBN:9780879698287] -xref: FBbt:00004551 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004551 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007289 ! insect tagmatic subdivision of integument relationship: part_of UBERON:6003018 ! insect adult thorax relationship: part_of UBERON:6005396 ! insect adult integumentary system @@ -393834,14 +394883,14 @@ relationship: part_of UBERON:6005396 ! insect adult integumentary system id: UBERON:6004552 name: insect tergum def: "The upper, originally unpaired plate of the segmented insect body, which either independently or fused with a ventral plate covers the body dorsally, specifically that of the thorax." [FlyBase:FBrf0166419] -xref: FBbt:00004552 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004552 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007284 ! insect region of integument relationship: part_of UBERON:6004551 ! insect adult external thorax [Term] id: UBERON:6004578 name: insect adult external mesothorax -xref: FBbt:00004578 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004578 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007285 ! insect segmental subdivision of integument relationship: part_of UBERON:6003021 ! insect adult mesothoracic segment relationship: part_of UBERON:6004551 ! insect adult external thorax @@ -393849,7 +394898,6 @@ relationship: part_of UBERON:6004551 ! insect adult external thorax [Term] id: UBERON:6004579 name: insect dorsal mesothorax -xref: FBbt:00004579 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:6007284 ! insect region of integument relationship: develops_from UBERON:6001778 ! insect wing disc @@ -393862,7 +394910,7 @@ def: "The dorsal sclerites (tergites) of the mesothorax." [FBC:DOS] synonym: "alinotum" EXACT [FlyBase:FBrf0111704] synonym: "mesonotum" EXACT [FlyBase:FBrf0166419] synonym: "notum" BROAD [] -xref: FBbt:00004580 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004580 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:6004552 ! insect tergum relationship: develops_from UBERON:6006032 ! insect mesothoracic tergum primordium @@ -393873,7 +394921,7 @@ id: UBERON:6004646 name: insect tarsal segment def: "A segment of the tarsus of the adult leg. The first tarsal segment, the metatarsus, is proximally connected to the tibia. Tarsal segments are covered in 8 longitudinal rows of bristles, with row 1 being the most ventral." [FlyBase:FBim0000836.html, FlyBase:FBrf0007734, FlyBase:FBrf0012178] synonym: "tarsomere" EXACT [FlyBase:FBrf0111704] -xref: FBbt:00004646 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004646 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007150 ! insect segment of leg relationship: part_of UBERON:0005895 ! insect leg @@ -393886,7 +394934,7 @@ synonym: "basitarsus" EXACT [FlyBase:FBrf0111704] synonym: "first segment of the tarsus" EXACT [] synonym: "first tarsal segment" EXACT [] synonym: "tarsal segment 1" EXACT [] -xref: FBbt:00004648 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004648 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6004646 ! insect tarsal segment [Term] @@ -393895,7 +394943,7 @@ name: insect prothoracic leg def: "Leg of the prothoracic segment." [FBC:DOS] synonym: "first leg" EXACT [] synonym: "T1 leg" EXACT [] -xref: FBbt:00004663 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004663 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005895 ! insect leg intersection_of: UBERON:0005895 ! insect leg @@ -393907,7 +394955,7 @@ relationship: part_of UBERON:6003020 ! insect adult prothoracic segment id: UBERON:6004668 name: insect prothoracic tarsal segment def: "Tarsal segment of the adult prothoracic leg." [FBC:MMC] -xref: FBbt:00004668 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004668 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:6004646 ! insect tarsal segment intersection_of: UBERON:6004646 ! insect tarsal segment @@ -393922,7 +394970,7 @@ synonym: "prothoracic basitarsus" EXACT [FlyBase:FBrf0111704] synonym: "prothoracic tarsal segment 1" EXACT [] synonym: "T1 tarsal segment 1" EXACT [] synonym: "T1 Ts1" EXACT [FlyBase:FBrf0219028] -xref: FBbt:00004670 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004670 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6004648 ! insect metatarsus is_a: UBERON:6004668 ! insect prothoracic tarsal segment intersection_of: UBERON:6004648 ! insect metatarsus @@ -393933,7 +394981,7 @@ relationship: part_of UBERON:6004663 ! insect prothoracic leg [Term] id: UBERON:6004788 name: insect adult external abdomen -xref: FBbt:00004788 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004788 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007289 ! insect tagmatic subdivision of integument relationship: part_of UBERON:6003023 ! insect adult abdomen relationship: part_of UBERON:6005396 ! insect adult integumentary system @@ -393942,7 +394990,7 @@ relationship: part_of UBERON:6005396 ! insect adult integumentary system id: UBERON:6004823 name: insect analia def: "The set of external structures of adult abdominal segment(s) that makes up the anal apparatus." [PMID:27747420] -xref: FBbt:00004823 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004823 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:6001784 ! insect genital disc relationship: part_of UBERON:6004788 ! insect adult external abdomen @@ -393950,14 +394998,14 @@ relationship: part_of UBERON:6004788 ! insect adult external abdomen [Term] id: UBERON:6004824 name: insect female analia -xref: FBbt:00004824 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004824 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6004823 ! insect analia relationship: develops_from UBERON:6001787 ! insect female genital disc [Term] id: UBERON:6004825 name: insect male analia -xref: FBbt:00004825 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004825 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6004823 ! insect analia relationship: develops_from UBERON:6001785 ! insect male genital disc @@ -393966,28 +395014,28 @@ id: UBERON:6004979 name: insect trichome def: "Non-innervated projection of the cuticle around an actin-rich cellular process of an underlying epidermal cell." [FBC:DOS] synonym: "cell hair" RELATED [] -xref: FBbt:00004979 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004979 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007245 ! insect cuticular specialization [Term] id: UBERON:6004983 name: insect embryonic/larval cuticle synonym: "larval cuticle" EXACT [] -xref: FBbt:00004983 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004983 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001001 ! chitin-based cuticle relationship: part_of UBERON:6005393 ! insect embryonic/larval integumentary system [Term] id: UBERON:6004986 name: insect third instar larval cuticle -xref: FBbt:00004986 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004986 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6004983 ! insect embryonic/larval cuticle [Term] id: UBERON:6005023 name: insect imaginal precursor def: "Structure that proliferates to produce a larval imaginal disc and which gives rise to adult tissues (Bate and Martinez Arias, 1991)." [FlyBase:FBrf0053815, FlyBase:FBrf0064789] -xref: FBbt:00005023 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005023 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0005423 ! developing anatomical structure relationship: only_in_taxon NCBITaxon:50557 ! Insecta @@ -393997,7 +395045,7 @@ name: insect tracheal pit def: "Deep and narrow pit formed by the invagination of a tracheal placode in a late extended germ band embryo. Invagination of the placode begins during stage 11. Branches begin to bud from the pit during stage 11, with a dorsal and ventral stem being apparent by mid-stage 12. The pit closes over during stage 13. There are 10 pairs of tracheal pits - one pair in each tracheal metamere (each segment from T2 to A8). Pits are located in the central one third of each parasegment, with the most anterior in parasegment 4 and the most posterior in parasegment 14." [FlyBase:FBrf0064787, FlyBase:FBrf0089570] synonym: "embryonic tracheal pit" EXACT [] synonym: "tracheal sac" EXACT [FlyBase:FBrf0147036] -xref: FBbt:00005036 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005036 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6005037 ! insect tracheal primordium relationship: part_of UBERON:0000922 ! embryo @@ -394008,7 +395056,7 @@ def: "Primordium of a single tracheal metamere of the embryonic/larval tracheal synonym: "P2 TrachP" EXACT [FBC:DOS] synonym: "tracheal placode" RELATED [] synonym: "TrachP3" RELATED [] -xref: FBbt:00005037 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005037 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:6007046 ! insect dorsal ectoderm derivative @@ -394021,7 +395069,7 @@ id: UBERON:6005043 name: insect trachea def: "Cuticle-lined epithelial tube that forms part of the insect tracheal system." [FBbt:00005043] synonym: "trachea" BROAD SENSU [NCBITaxon:50557] -xref: FBbt:00005043 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005043 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0003127 ! open tracheal system trachea relationship: only_in_taxon NCBITaxon:50557 ! Insecta @@ -394029,7 +395077,7 @@ relationship: only_in_taxon NCBITaxon:50557 ! Insecta id: UBERON:6005054 name: insect spiracle def: "Opening of the tracheal system on the surface of the body." [FlyBase:FBrf0166419] -xref: FBbt:00005054 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005054 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007288 ! insect integumentary specialisation relationship: part_of UBERON:0005155 ! open tracheal system @@ -394047,7 +395095,7 @@ name: insect stomatogastric nervous system def: "A group of small, interconnected ganglia situated posterior to and between the two brain hemispheres and associated with the pharynx, esophagus and aorta." [FlyBase:FBrf0089570, PMID:12966498] synonym: "stomodaeal nervous system" RELATED [FlyBase:FBrf0111704] synonym: "stomodeal nervous system" RELATED [FlyBase:FBrf0111704] -xref: FBbt:00005096 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005096 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011216 ! organ system subdivision relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda @@ -394057,7 +395105,7 @@ relationship: part_of UBERON:0001017 ! central nervous system id: UBERON:6005168 name: insect external sensory organ synonym: "sensillum" NARROW [] -xref: FBbt:00005168 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005168 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000020 ! sense organ relationship: in_taxon NCBITaxon:6656 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Arthropoda relationship: only_in_taxon NCBITaxon:50557 ! Insecta @@ -394067,7 +395115,7 @@ id: UBERON:6005177 name: insect chaeta def: "A sensillum with a long, unicellular, setiform outgrowth that is strongly chitinized." [FlyBase:FBrf0111704, FlyBase:FBrf0166419] synonym: "sensillum chaeticum" EXACT [FlyBase:FBrf0111704] -xref: FBbt:00005177 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005177 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007232 ! insect eo-type sensillum [Term] @@ -394075,7 +395123,7 @@ id: UBERON:6005378 name: insect wing margin def: "The border or edge of the wing. It separates the dorsal and ventral compartments." [FBC:gg] synonym: "margin" BROAD [] -xref: FBbt:00005378 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005378 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007284 ! insect region of integument relationship: part_of UBERON:0000984 ! imaginal disc-derived wing @@ -394083,7 +395131,7 @@ relationship: part_of UBERON:0000984 ! imaginal disc-derived wing id: UBERON:6005380 name: insect pharynx def: "Section of the insect foregut anterior to the esophagus." [FBbt:00005380, http://orcid.org/0000-0002-6601-2165] -xref: FBbt:00005380 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005380 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0004921 {source="FBbt"} ! subdivision of digestive tract is_a: UBERON:0006562 {note="parent may be obsoleted"} ! pharynx relationship: part_of UBERON:0003929 {source="FBbt"} ! digestive tract epithelium @@ -394092,7 +395140,7 @@ relationship: part_of UBERON:0003929 {source="FBbt"} ! digestive tract epitheliu id: UBERON:6005393 name: insect embryonic/larval integumentary system synonym: "larval integumentary system" RELATED [] -xref: FBbt:00005393 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005393 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002416 ! integumental system relationship: only_in_taxon NCBITaxon:50557 ! Insecta relationship: part_of UBERON:0002548 ! larva @@ -394102,7 +395150,7 @@ id: UBERON:6005396 name: insect adult integumentary system synonym: "adult external" RELATED [] synonym: "adult integument" EXACT [] -xref: FBbt:00005396 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005396 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002416 ! integumental system relationship: only_in_taxon NCBITaxon:50557 ! Insecta relationship: part_of UBERON:0007023 ! adult organism @@ -394124,7 +395172,7 @@ is_obsolete: true [Term] id: UBERON:6005427 name: insect ectoderm anlage -xref: FBbt:00005427 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005427 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0007688 ! anlage relationship: only_in_taxon NCBITaxon:50557 ! Insecta @@ -394164,7 +395212,7 @@ consider: UBERON:6005538 id: UBERON:6005461 name: insect circulatory system primordium synonym: "embryonic/larval circulatory system specific anlage" RELATED [] -xref: FBbt:00005461 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005461 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001048 ! primordium relationship: only_in_taxon NCBITaxon:50557 ! Insecta @@ -394173,7 +395221,7 @@ id: UBERON:6005467 name: insect lymph gland primordium def: "Primordium of the insect embryo that gives rise to the embryonic/larval lymph gland." [ISBN:9783540570790] synonym: "lymph gland specific anlage" RELATED [] -xref: FBbt:00005467 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005467 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:6005461 ! insect circulatory system primordium relationship: dc-contributor https://orcid.org/0000-0001-9676-7393 @@ -394184,7 +395232,7 @@ relationship: part_of UBERON:0000922 ! embryo id: UBERON:6005514 name: insect adult clypeo-labral primordium synonym: "A AdCly" RELATED [FBC:DOS] -xref: FBbt:00005514 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005514 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001048 ! primordium is_a: UBERON:6001648 ! insect embryonic imaginal precursor relationship: develops_from UBERON:6005538 ! insect clypeo-labral primordium @@ -394196,7 +395244,7 @@ id: UBERON:6005526 name: insect dorsal epidermis primordium synonym: "dorEpiP2" RELATED [] synonym: "dorsal epidermis specific anlage" RELATED [] -xref: FBbt:00005526 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005526 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:6007046 ! insect dorsal ectoderm derivative @@ -394208,7 +395256,7 @@ id: UBERON:6005533 name: insect ventral epidermis primordium synonym: "P2 iVenEp" RELATED [FBC:DOS] synonym: "venEpiP2" RELATED [] -xref: FBbt:00005533 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005533 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:6025993 ! insect ventral ectoderm derivative @@ -394219,7 +395267,7 @@ relationship: part_of UBERON:0000922 ! embryo id: UBERON:6005538 name: insect clypeo-labral primordium synonym: "ClyP2" RELATED [] -xref: FBbt:00005538 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005538 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:6025991 ! insect anterior ectoderm derivative @@ -394244,7 +395292,7 @@ name: insect ventral ectoderm def: "Ventral part of the insect trunk ectoderm." [ISBN:9783540570790] synonym: "P2 VenEc" RELATED [FBC:DOS] synonym: "venEc" RELATED [] -xref: FBbt:00005558 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005558 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:6007045 ! insect trunk ectoderm @@ -394253,7 +395301,7 @@ id: UBERON:6005569 name: insect presumptive embryonic/larval tracheal system def: "The sum of all the structures in the embryo that will develop into the embryonic/larval tracheal system. This corresponds to the tracheal primordia and their component tracheal branch primordia along with primordia of the spiracles." [FBC:DOS] synonym: "embryonic tracheal system" RELATED [FBC:DOS] -xref: FBbt:00005569 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005569 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007116 ! insect presumptive embryonic/larval system [Term] @@ -394265,7 +395313,7 @@ synonym: "dorsocaudal pharyngeal sense organ" RELATED [] synonym: "embryonic Bolwig's organ" EXACT [] synonym: "embryonic visual system" EXACT [] synonym: "larval Bolwig's organ" EXACT [] -xref: FBbt:00005805 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005805 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000970 ! eye is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:6002642 ! insect embryonic/larval ocular segment sensillum @@ -394282,7 +395330,7 @@ name: insect Bolwig organ primordium def: "Primordium of the insect embryo that gives rise to the larval Bolwig organ." [ISBN:9783540570790] synonym: "Bolwig's organ primordium" EXACT [] synonym: "P1 BolOrg" RELATED [FBC:DOS] -xref: FBbt:00005830 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005830 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:6025991 ! insect anterior ectoderm derivative @@ -394294,14 +395342,14 @@ relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:6005831 name: insect dorsal imaginal precursor -xref: FBbt:00005831 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005831 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6005023 ! insect imaginal precursor [Term] id: UBERON:6005913 name: insect arista lateral def: "A bristle-like, non-innervated outgrowth of the arista. Each lateral is formed from the outgrowth of a single polyploid central core cell." [FlyBase:FBrf0137012] -xref: FBbt:00005913 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005913 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6004979 ! insect trichome relationship: part_of UBERON:6004519 ! insect arista @@ -394309,7 +395357,7 @@ relationship: part_of UBERON:6004519 ! insect arista id: UBERON:6006011 name: insect pharate adult def: "The developing adult after pupal-adult apolysis, i.e. from stage P8 (when yellow eye color first becomes visible through the pupal case), to eclosion." [FlyBase:FBrf0049147] -xref: FBbt:00006011 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00006011 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000468 ! multicellular organism relationship: develops_from UBERON:0003143 ! pupa relationship: only_in_taxon NCBITaxon:50557 ! Insecta @@ -394318,7 +395366,7 @@ relationship: only_in_taxon NCBITaxon:50557 ! Insecta id: UBERON:6006032 name: insect mesothoracic tergum primordium def: "Region of the dorsal mesothoracic disc that will develop into the mesothoracic tergum." [FBC:DOS, FlyBase:FBrf0027793] -xref: FBbt:00006032 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00006032 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0010371 ! ecto-epithelium relationship: part_of UBERON:6001778 ! insect wing disc @@ -394327,7 +395375,7 @@ relationship: part_of UBERON:6001778 ! insect wing disc id: UBERON:6007020 name: insect metatarsus of male prothoracic leg def: "First tarsal segment of the male prothoracic leg. In contrast to females, it has a sex comb, central bristle and 5 to 6 transverse rows of bristles (TR)." [FlyBase:FBrf0012178, FlyBase:FBrf0031004, FlyBase:FBrf0219028] -xref: FBbt:00007020 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007020 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6004670 ! insect prothoracic metatarsus relationship: part_of UBERON:0003101 ! male organism @@ -394335,7 +395383,7 @@ relationship: part_of UBERON:0003101 ! male organism id: UBERON:6007045 name: insect trunk ectoderm def: "The region of the ectoderm posterior to the cephalic furrow." [FBC:DOS] -xref: FBbt:00007045 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007045 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002050 ! embryonic structure relationship: only_in_taxon NCBITaxon:50557 ! Insecta relationship: part_of UBERON:0000924 ! ectoderm @@ -394355,7 +395403,7 @@ synonym: "centro-posterior medial neuropil" EXACT [] synonym: "centro-posterior medial synaptic neuropil domain" EXACT [] synonym: "CPM" RELATED [] synonym: "larval central complex" EXACT [] -xref: FBbt:00007070 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007070 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6040007 ! insect synaptic neuropil domain relationship: part_of UBERON:6001925 ! insect embryonic/larval protocerebrum @@ -394363,7 +395411,7 @@ relationship: part_of UBERON:6001925 ! insect embryonic/larval protocerebrum id: UBERON:6007116 name: insect presumptive embryonic/larval system def: "The sum of all the developing presumptive components of a specific embryonic/larval system in an embryo." [FBC:DOS] -xref: FBbt:00007116 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007116 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:6040003 ! insect non-connected developing system intersection_of: UBERON:6040003 ! insect non-connected developing system @@ -394374,7 +395422,7 @@ relationship: part_of UBERON:0000922 ! embryo id: UBERON:6007145 name: insect adult protocerebrum def: "Protocerebrum of the adult brain." [FBC:SPR] -xref: FBbt:00007145 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007145 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6003627 ! insect protocerebrum relationship: part_of UBERON:6003011 ! insect adult labral segment relationship: part_of UBERON:6110636 ! insect adult cerebral ganglion @@ -394383,7 +395431,7 @@ relationship: part_of UBERON:6110636 ! insect adult cerebral ganglion id: UBERON:6007149 name: segment of antenna def: "Any appendage segment that is part of some antenna." [FBC:auto_generated_definition] -xref: FBbt:00007149 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007149 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0010758 ! subdivision of organism along appendicular axis intersection_of: UBERON:0010758 ! subdivision of organism along appendicular axis intersection_of: part_of UBERON:0000972 ! antenna @@ -394393,7 +395441,7 @@ relationship: part_of UBERON:0000972 ! antenna id: UBERON:6007150 name: insect segment of leg def: "Any appendage segment that is part of some leg." [FBC:auto_generated_definition] -xref: FBbt:00007150 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007150 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0010758 ! subdivision of organism along appendicular axis intersection_of: UBERON:0010758 ! subdivision of organism along appendicular axis intersection_of: part_of UBERON:0005895 ! insect leg @@ -394404,7 +395452,7 @@ relationship: part_of UBERON:0005895 ! insect leg id: UBERON:6007231 name: insect external sensillum def: "Sensillum which is embedded in the body wall and has a specific cuticular structure involved in the transduction of some sensory signal as a part." [FBC:DOS] -xref: FBbt:00007231 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007231 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002536 ! arthropod sensillum is_a: UBERON:6005168 ! insect external sensory organ @@ -394413,14 +395461,14 @@ id: UBERON:6007232 name: insect eo-type sensillum def: "Sensillum with innervated external cuticular sensory structure consisting of one or more bipolar sensory neurons, and 3 support cells: a trichogen cell which makes the external cuticular sensory structure, a thecogen cell which makes the socket that holds the base of the external sensory structure and a tormogen cell which makes the cuticular matrix (cap) at the tip of the innervating dendrite(s)." [FlyBase:FBrf0089570] synonym: "eso" RELATED [] -xref: FBbt:00007232 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007232 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007231 ! insect external sensillum [Term] id: UBERON:6007233 name: insect internal sensillum def: "Sensillum that is internal to the animal - i.e. having no part that is part of the cuticle." [FBC:DOS] -xref: FBbt:00007233 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007233 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002536 ! arthropod sensillum is_a: UBERON:6007373 ! insect internal sense organ @@ -394429,7 +395477,7 @@ id: UBERON:6007240 name: insect embryonic/larval sensillum def: "Any sensillum (UBERON:6007152) that is part of some larva (UBERON:6001727)." [FBC:auto_generated_definition] synonym: "larval sensillum" EXACT [] -xref: FBbt:00007240 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007240 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002536 ! arthropod sensillum is_a: UBERON:6002639 ! insect larval sense organ intersection_of: UBERON:0002536 ! arthropod sensillum @@ -394441,7 +395489,7 @@ id: UBERON:6007242 name: insect embryonic/larval head sensillum def: "Any sensillum (UBERON:6007152) that is part of some larval head (UBERON:6001730)." [FBC:auto_generated_definition] synonym: "larval head sensillum" NARROW [] -xref: FBbt:00007242 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007242 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000963 ! head sensillum is_a: UBERON:6007240 ! insect embryonic/larval sensillum is_a: UBERON:6007280 ! insect embryonic/larval head sense organ @@ -394452,7 +395500,7 @@ relationship: part_of UBERON:6001730 ! insect larval head [Term] id: UBERON:6007245 name: insect cuticular specialization -xref: FBbt:00007245 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007245 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000476 ! acellular anatomical structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: only_in_taxon NCBITaxon:50557 ! Insecta @@ -394462,7 +395510,7 @@ relationship: part_of UBERON:0001001 ! chitin-based cuticle id: UBERON:6007248 name: insect chorionic specialization def: "Specialized structure of the chorion of the egg." [FBC:MMC] -xref: FBbt:00007248 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007248 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000476 ! acellular anatomical structure relationship: only_in_taxon NCBITaxon:50557 ! Insecta relationship: part_of UBERON:0000920 ! egg chorion @@ -394472,7 +395520,7 @@ id: UBERON:6007280 name: insect embryonic/larval head sense organ def: "Any sense organ (UBERON:6005155) that is part of some larval head (UBERON:6001730)." [FBC:auto_generated_definition] synonym: "larval head sense organ" EXACT [] -xref: FBbt:00007280 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007280 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6002639 ! insect larval sense organ intersection_of: UBERON:0000020 ! sense organ intersection_of: part_of UBERON:6001730 ! insect larval head @@ -394482,7 +395530,7 @@ relationship: part_of UBERON:6001730 ! insect larval head id: UBERON:6007284 name: insect region of integument def: "A region of cuticle and its underlying epidermis." [FBC:DOS] -xref: FBbt:00007284 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007284 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0011216 ! organ system subdivision relationship: only_in_taxon NCBITaxon:50557 ! Insecta relationship: part_of UBERON:0002416 ! integumental system @@ -394491,26 +395539,26 @@ relationship: part_of UBERON:0002416 ! integumental system id: UBERON:6007285 name: insect segmental subdivision of integument def: "A segmental subdivision of the integument of the whole animal." [FBC:DOS] -xref: FBbt:00007285 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007285 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007284 ! insect region of integument [Term] id: UBERON:6007288 name: insect integumentary specialisation -xref: FBbt:00007288 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007288 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007284 ! insect region of integument [Term] id: UBERON:6007289 name: insect tagmatic subdivision of integument -xref: FBbt:00007289 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007289 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007284 ! insect region of integument [Term] id: UBERON:6007331 name: insect segmental subdivision of organ system def: "The part of some organism that is part of some specified segment." [FBC:DOS] -xref: FBbt:00007331 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007331 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0011216 ! organ system subdivision relationship: only_in_taxon NCBITaxon:50557 ! Insecta @@ -394518,7 +395566,7 @@ relationship: only_in_taxon NCBITaxon:50557 ! Insecta id: UBERON:6007373 name: insect internal sense organ def: "Sense organ that is internal to the animal - i.e. having no part that is part of the cuticle." [FBC:DOS] -xref: FBbt:00007373 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007373 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000020 ! sense organ relationship: only_in_taxon NCBITaxon:50557 ! Insecta @@ -394526,7 +395574,7 @@ relationship: only_in_taxon NCBITaxon:50557 ! Insecta id: UBERON:6007424 name: insect epithelial furrow def: "A region of an epithelium that folds inwards from the epithelial plane to form a furrow." [FBC:DOS] -xref: FBbt:00007424 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007424 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000483 ! epithelium relationship: only_in_taxon NCBITaxon:50557 ! Insecta @@ -394542,7 +395590,7 @@ id: UBERON:6016022 name: insect abdominal histoblast primordium def: "A primordium of the insect embryo that gives rise to the larval abdominal histoblast nests." [ISBN:9780879698997] synonym: "abdominal histoblast specific anlage" RELATED [] -xref: FBbt:00016022 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00016022 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: dc-contributor https://orcid.org/0000-0001-9676-7393 @@ -394599,7 +395647,7 @@ relationship: in_taxon NCBITaxon:6656 {source="https://github.com/obophenotype/u id: UBERON:6040003 name: insect non-connected developing system def: "The sum of all the anlagen and primordia that will develop into a single system." [FBC:DOS] -xref: FBbt:00040003 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00040003 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0034923 ! disconnected anatomical group relationship: only_in_taxon NCBITaxon:50557 ! Insecta @@ -394608,7 +395656,7 @@ relationship: only_in_taxon NCBITaxon:50557 ! Insecta id: UBERON:6040005 name: insect synaptic neuropil def: "The part of the neuropil consisting largely of synapsing neuron projections." [FlyBase:FBrf0224194] -xref: FBbt:00040005 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00040005 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000465 ! material anatomical entity relationship: only_in_taxon NCBITaxon:50557 ! Insecta relationship: part_of UBERON:0002606 ! neuropil @@ -394619,7 +395667,7 @@ name: insect synaptic neuropil domain def: "Region of synaptic neuropil whose boundaries are largely discontinuities in the density of presynaptic terminals: high density in the synaptic neuropil domain, lower or zero density outside this region. These boundaries often correspond to a boundary with glial sheath, tract neuropil or cortex." [FlyBase:FBrf0155900, FlyBase:FBrf0224194, http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] synonym: "fibrous neuropil" RELATED [] synonym: "synaptic neuropil" RELATED [] -xref: FBbt:00040007 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00040007 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:6040005 ! insect synaptic neuropil @@ -394628,7 +395676,7 @@ id: UBERON:6041000 name: insect synaptic neuropil block def: "A closely associated group of synaptic neuropil domains." [FBC:DOS, FBC:KI] synonym: "level 1 neuropil" EXACT [FlyBase:FBrf0224194] -xref: FBbt:00041000 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00041000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0034923 ! disconnected anatomical group relationship: part_of UBERON:6040005 ! insect synaptic neuropil @@ -394643,7 +395691,7 @@ consider: UBERON:0011676 id: UBERON:6100153 name: insect sensilla row def: "A row of sensilla." [FBC:DOS] -xref: FBbt:00100153 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00100153 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0034926 ! anatomical row relationship: composed_primarily_of UBERON:0002536 ! arthropod sensillum relationship: only_in_taxon NCBITaxon:50557 ! Insecta @@ -394657,7 +395705,7 @@ synonym: "cerebrum" RELATED [] synonym: "CRG" EXACT BRAIN_NAME_ABV [FlyBase:FBrf0224194] synonym: "SPG" RELATED [] synonym: "supraesophageal ganglion" RELATED [] -xref: FBbt:00110636 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00110636 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6003626 ! insect supraesophageal ganglion relationship: develops_from UBERON:6001920 ! insect embryonic/larval brain relationship: part_of UBERON:6003624 ! insect adult brain @@ -394666,7 +395714,7 @@ relationship: part_of UBERON:6003624 ! insect adult brain id: UBERON:6110746 name: insect presumptive prothoracic metatarsus def: "Region of the prothoracic leg disc that will develop into the prothoracic metatarsus." [FlyBase:FBrf0219028] -xref: FBbt:00110746 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00110746 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007688 ! anlage relationship: part_of UBERON:6001781 ! insect prothoracic leg disc @@ -394675,7 +395723,7 @@ relationship: part_of UBERON:6001781 ! insect prothoracic leg disc id: UBERON:6110811 name: insect presumptive arista def: "Region of the antennal disc that will develop into the arista." [FlyBase:FBrf0031004] -xref: FBbt:00110811 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00110811 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007688 ! anlage relationship: part_of UBERON:6001767 ! insect antennal disc @@ -394685,10 +395733,6 @@ id: UBERON:7500033 name: obsolete distal-most point of medial condyle of femur def: "OBSOLETE The distal-most point of the medial condyle of a femur." [https://orcid.org/0000-0003-2699-3066] comment: too specific of a term -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Knee_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Knee_R.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Knee_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Knee_R.glb" xsd:anyURI is_obsolete: true replaced_by: UBERON:0009984 @@ -396217,7 +397261,8 @@ is_a: UBERON:0034944 ! zone of organ relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0002367 ! prostate gland relationship: present_in_taxon NCBITaxon:9606 {source="PMID:29038334"} ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb" xsd:anyURI [Term] id: UBERON:8410026 @@ -396232,7 +397277,8 @@ is_a: UBERON:0034944 ! zone of organ relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0002367 ! prostate gland relationship: present_in_taxon NCBITaxon:9606 {source="PMID:29038334"} ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb" xsd:anyURI [Term] id: UBERON:8410027 @@ -396246,7 +397292,8 @@ is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0002367 ! prostate gland relationship: present_in_taxon NCBITaxon:9606 {source="PMID:29038334"} ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb" xsd:anyURI [Term] id: UBERON:8410028 @@ -396655,11 +397702,13 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:8410059 name: submucous nerve plexus of colon def: "Submucous nerve plexus that is located in the colon." [http://orcid.org/0000-0003-3440-1876] +subset: human_reference_atlas is_a: UBERON:0005304 ! submucous nerve plexus intersection_of: UBERON:0005304 ! submucous nerve plexus intersection_of: part_of UBERON:0001155 ! colon relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0001155 ! colon +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:8410060 @@ -396702,11 +397751,13 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/2104" xsd id: UBERON:8410063 name: myenteric nerve plexus of small intestine def: "Myenteric nerve plexus that is part of the small intestine." [http://orcid.org/0000-0003-3440-1876] +subset: human_reference_atlas is_a: UBERON:0002439 ! myenteric nerve plexus intersection_of: UBERON:0002439 ! myenteric nerve plexus intersection_of: part_of UBERON:0002108 ! small intestine relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0002108 ! small intestine +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:8410064 @@ -397091,7 +398142,7 @@ name: cerebral nuclei def: "One of three components of the cerebrum that is a composite structure of the endbrain defined on the basis of origin from the ventricular ridge of the embryonic Encephalon. It consists of the extended striatum and the extended pallidum." [neuronames:2677] comment: This was added as a more precise mapping to the Allen brain atlas (as opposed to collection of basal ganglia) synonym: "CNU" EXACT [MBA:623] -xref: BTO:0006534 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006534 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:10331 xref: HBA:4275 xref: MBA:623 @@ -397367,7 +398418,6 @@ def: "A hypothalamic region in rodents that is homologous to the lateral tuberal comment: While lateral tuberal nucleus is often used interchangeably with tuberal nucleus in rodents, lateral tuberal nucleus is specific to humans and higher primates. In some cases, lateral tuberal nucleus is thought to be part of the tuberal nucleus in rodents, and could possibly be homologous to human tuberal region instead. {xref="PMID:29976824", xref="neuronames:1890", xref="PMID:1362279"} synonym: "lateral tuberal nucleus (sensu Rodentia)" BROAD [neuronames:1890] synonym: "lateral tuberal nucleus (sensu Rodentia)" EXACT [PMID:29976812] -xref: DMBA:16271 xref: MBA:614 is_a: UBERON:0006568 ! hypothalamic nucleus relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 @@ -397753,7 +398803,7 @@ id: UBERON:8450002 name: excretory system def: "An anatomical system that eliminates waste products that arise as a result of metabolic activity." [GO:0007588] subset: human_reference_atlas -xref: BTO:0006338 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006338 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0000467 ! anatomical system intersection_of: UBERON:0000467 ! anatomical system intersection_of: capable_of GO:0046903 ! secretion @@ -398234,7 +399284,7 @@ property_value: dcterms-date "2022-11-22T09:15:50Z" xsd:dateTime id: UBERON:8480040 name: ovarian fluid def: "Fish ovary secretion released with eggs." [PMID:8526977] -xref: BTO:0004569 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0004569 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0006537 ! female reproductive gland secretion relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: in_taxon NCBITaxon:7898 ! Actinopterygii @@ -399811,6 +400861,7 @@ property_value: dcterms-date "2023-12-12T11:50:32Z" xsd:dateTime id: UBERON:8600026 name: chorionic villous tree def: "A tree-like structure formed by chorionic villi that sprouts from the chorionic plate in the placental disc. The arborous shape of the chorionic villous tree provides maximal contact area with maternal blood in the intervillous space." [doi:10.1007/978-3-030-84725-8] +subset: human_reference_atlas synonym: "placental villous tree" EXACT [PMID:9260835] synonym: "villous tree" BROAD [doi:10.1007/978-3-030-84725-8] is_a: UBERON:0004120 ! mesoderm-derived structure @@ -399818,6 +400869,7 @@ relationship: composed_primarily_of UBERON:0007106 ! chorionic villus relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:8600038 ! placental disc +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: proximally_connected_to UBERON:0004027 ! chorionic plate property_value: dcterms-date "2023-12-12T11:57:24Z" xsd:dateTime @@ -399825,52 +400877,62 @@ property_value: dcterms-date "2023-12-12T11:57:24Z" xsd:dateTime id: UBERON:8600027 name: chorionic stem villus def: "A chorionic villus that provides structural support to the villous tree. A chorionic stem villus is characterized by a condensed fibrous stroma in which fetal arteries, veins, arterioles, and venules are embedded. It represents a distributing framework for fetal chorionic circulation, supplying the floating villi. It can exhibit a diameter ranging from approximately 3000 μm (trunci near the chorionic plate) to 80 μm (smallest ramuli chorii)." [doi:10.1007/978-3-030-84725-8, PMID:9260835] +subset: human_reference_atlas synonym: "placental stem villus" EXACT [PMID:9260835] is_a: UBERON:0007106 ! chorionic villus relationship: branching_part_of UBERON:8600026 ! chorionic villous tree relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: develops_from UBERON:8600029 ! chorionic immature intermediate villus relationship: part_of UBERON:8600026 ! chorionic villous tree +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: dcterms-date "2023-12-12T13:00:59Z" xsd:dateTime [Term] id: UBERON:8600028 name: chorionic mesenchymal villus def: "The first generation of a tertiary villus that is derived from a syncytial sprout by the invasion of the mesenchyme, in which blood vessels differentiate through vasculogenesis, and gradually transforms into a new immature intermediate villus. A chorionic mesenchymal villus has a thick trophoblastic covering, and cytotrophoblast cells are interposed between syncytium and the trophoblastic basal lamina over 50–100% of the surface. The stroma is characterized by loosely arranged collagen fibers that enmesh mesenchymal and some villous macrophages. The fetal capillaries are poorly developed." [doi:10.1007/978-3-030-84725-8] +subset: human_reference_atlas synonym: "mesenchymal villus" BROAD [doi:10.1007/978-3-030-84725-8] is_a: UBERON:0009995 ! tertiary chorionic villus relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: dcterms-date "2023-12-12T13:38:12Z" xsd:dateTime [Term] id: UBERON:8600029 name: chorionic immature intermediate villus def: "A bulbous, immature chorionic villus that is formed of loose connective tissue with few fetal vessels. A chorionic immature intermediate villus develops from a chorionic mesenchymal villus, and is the forerunner of a chorionic stem villus." [doi:10.1007/978-3-030-84725-8, PMID:487407, PMID:9260835] +subset: human_reference_atlas synonym: "immature intermediate villus" RELATED [doi:10.1007/978-3-030-84725-8, PMID:21452443] is_a: UBERON:0007106 ! chorionic villus relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: develops_from UBERON:8600028 ! chorionic mesenchymal villus relationship: develops_into UBERON:8600027 ! chorionic stem villus +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: dcterms-date "2023-12-12T13:41:05Z" xsd:dateTime [Term] id: UBERON:8600030 name: chorionic terminal villus def: "The most distal part of a chorionic villus. A chorionic terminal villus is a grape-like structure characterized by a high degree of capillarization and highly dilated sinusoids. A terminal villus has less stroma and a discontinuous cytotrophoblast layer, and contains 4–6 fetal capillaries per cross section. It exhibits a diameter ranging from 40 to about 80 μm." [doi:10.1007/978-3-030-84725-8, PMID:21452443] +subset: human_reference_atlas synonym: "terminal villus" BROAD [PMID:21452443] is_a: UBERON:8600032 ! chorionic floating villus relationship: branching_part_of UBERON:8600026 ! chorionic villous tree relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: dcterms-date "2023-12-12T13:41:16Z" xsd:dateTime [Term] id: UBERON:8600031 name: chorionic mature intermediate villus def: "A slender branch of a chorionic stem villus. A chorionic mature intermediate villus lacks fetal arterioles and venules in the stroma, which is composed of slender fetal capillaries embedded into a loose connective tissue that is rich in cells but poor in fibers. It exhibits a diameter ranging from 60 to about 100 μm." [doi:10.1007/978-3-030-84725-8, PMID:21452443] +subset: human_reference_atlas synonym: "mature intermediate villus" BROAD [PMID:21452443] is_a: UBERON:8600032 ! chorionic floating villus relationship: branching_part_of UBERON:8600026 ! chorionic villous tree relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: proximally_connected_to UBERON:8600027 ! chorionic stem villus property_value: dcterms-date "2023-12-12T13:41:28Z" xsd:dateTime @@ -399929,6 +400991,7 @@ property_value: dcterms-date "2024-01-09T16:48:17Z" xsd:dateTime id: UBERON:8600036 name: kidney loop of Henle long descending thin limb outer medulla def: "A section of the long descending thin limb of the loop of Henle that is part of the outer medulla of the kidney." [PMID:33769951] +subset: human_reference_atlas synonym: "DTL2" RELATED OMO:0003000 [PMID:33769951] synonym: "long descending limb of the loop of Henle in the outer medulla" EXACT [PMID:33769951] is_a: UBERON:0000064 ! organ part @@ -399936,12 +400999,14 @@ relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: dc-contributor https://orcid.org/0000-0003-2804-127X relationship: part_of UBERON:0001293 ! outer medulla of kidney relationship: part_of UBERON:0005100 ! long descending thin limb +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: dcterms-date "2024-01-15T13:28:03Z" xsd:dateTime [Term] id: UBERON:8600037 name: kidney loop of Henle long descending thin limb inner medulla def: "A section of the long descending thin limb of the loop of Henle that is part of the inner medulla of the kidney." [PMID:33769951] +subset: human_reference_atlas synonym: "DTL3" RELATED OMO:0003000 [PMID:33769951] synonym: "long descending limb of the loop of Henle in the inner medulla" EXACT [PMID:33769951] is_a: UBERON:0000064 ! organ part @@ -399949,22 +401014,26 @@ relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: dc-contributor https://orcid.org/0000-0003-2804-127X relationship: part_of UBERON:0001294 ! inner medulla of kidney relationship: part_of UBERON:0005100 ! long descending thin limb +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: dcterms-date "2024-01-15T13:32:25Z" xsd:dateTime [Term] id: UBERON:8600038 name: placental disc def: "A disc-shaped structure that is part of the placenta. A placental disc supports fetal development through the exchange of nutrients between maternal and fetal bloodstreams. The placental disc is structured to keep the blood streams separate, while maximizing surface area for the transport of nutrients between them, to maintain an immunological barrier." [PMID:35496035] +subset: human_reference_atlas synonym: "placental disk" EXACT [PMID:30133439] is_a: UBERON:0004120 ! mesoderm-derived structure relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0001987 ! placenta +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: dcterms-date "2024-01-16T17:50:20Z" xsd:dateTime [Term] id: UBERON:8600039 name: chorionic villous mesenchyme def: "A mesenchyme that is part of a chorionic villus." [doi:10.1007/978-3-030-84725-8] +subset: human_reference_atlas is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0003265 ! chorionic mesenchyme is_a: UBERON:0010377 ! mesenchyme from somatopleure @@ -399972,24 +401041,28 @@ intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0007106 ! chorionic villus relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0007106 ! chorionic villus +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: dcterms-date "2024-01-16T18:13:12Z" xsd:dateTime [Term] id: UBERON:8600040 name: chorionic stem villous blood vessel def: "A blood vessel that is part of a chorionic stem villus." [doi:10.1007/978-3-030-84725-8] +subset: human_reference_atlas synonym: "stem villous vessel" BROAD [PMID:7547738] is_a: UBERON:0022358 ! placenta blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:8600027 ! chorionic stem villus relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:8600027 ! chorionic stem villus +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: dcterms-date "2024-01-16T18:14:32Z" xsd:dateTime [Term] id: UBERON:8600041 name: chorionic terminal villous capillary def: "A capillary that is part of a chorionic terminal villus. This capillary is generally narrow, but displays sinusoidal dilations along its length, often at the points of acute bends. These dilations bring the capillary endothelium into close contact with the overlying syncytiotrophoblast to form a vasculosyncytial membrane." [doi:10.1007/978-3-030-84725-8] +subset: human_reference_atlas synonym: "terminal villous capillary" BROAD [PMID:22461195] is_a: UBERON:0001982 ! capillary is_a: UBERON:0022358 ! placenta blood vessel @@ -399997,18 +401070,21 @@ intersection_of: UBERON:0001982 ! capillary intersection_of: part_of UBERON:8600030 ! chorionic terminal villus relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:8600030 ! chorionic terminal villus +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: dcterms-date "2024-01-16T18:16:47Z" xsd:dateTime [Term] id: UBERON:8600042 name: endometrial lymphatic vessel def: "A lymphatic vessel that is part of an endometrium." [PMID:23054374] +subset: human_reference_atlas is_a: UBERON:0001473 ! lymphatic vessel is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0001473 ! lymphatic vessel intersection_of: part_of UBERON:0001295 ! endometrium relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0001295 ! endometrium +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: dcterms-date "2024-01-16T18:18:36Z" xsd:dateTime [Term]