diff --git a/src/patterns/dosdp-dev/deviationTowardsTheMedialSideOfAnatomicalEntity.yaml b/src/patterns/dosdp-dev/deviationTowardsTheMedialSideOfAnatomicalEntity.yaml new file mode 100644 index 00000000..1435be06 --- /dev/null +++ b/src/patterns/dosdp-dev/deviationTowardsTheMedialSideOfAnatomicalEntity.yaml @@ -0,0 +1,66 @@ +--- +pattern_name: deviationTowardsTheMedialSideOfAnatomicalEntity + +pattern_iri: http://purl.obolibrary.org/obo/upheno/patterns-dev/deviationTowardsTheMedialSideOfAnatomicalEntity.yaml + +description: 'Use this pattern for phenotypes involving angulation, + directional change or bending towards the middle of an anatomical + entity that is abnormal in space or time (e.g. permanent).' + +# examples: +# - http://purl.obolibrary.org/obo/HP_0030084 # Clinodactyly +# - http://purl.obolibrary.org/obo/HP_0001863 # Toe clinodactyly +# - http://purl.obolibrary.org/obo/HP_0009486 # Radial deviation of the hand +# - http://purl.obolibrary.org/obo/MP_0006253 # clinodactyly + +contributors: + - https://orcid.org/0000-0001-8314-2140 # Ray Stefancsik + - https://orcid.org/0000-0003-4606-0597 # Susan Bello + - https://orcid.org/0000-0002-9900-7880 # Yvonne M. Bradford + +classes: + deviation_towards_the_medial_side: PATO:0002177 + abnormal: PATO:0000460 + anatomical_entity: UBERON:0001062 + +relations: + characteristic_of: RO:0000052 + has_modifier: RO:0002573 + has_part: BFO:0000051 + +annotationProperties: + broad_synonym: oio:hasBroadSynonym + +vars: + anatomical_entity: "'anatomical_entity'" + +name: + text: "deviation of %s towards the middle" + vars: + - anatomical_entity + +annotations: + - annotationProperty: broad_synonym + text: "shift of %s towards the middle" + vars: + - anatomical_entity + + - annotationProperty: broad_synonym + text: "permanent bending of %s" + vars: + - anatomical_entity + +def: + text: "A changed direction of position or shift towards the middle of %s." + vars: + - anatomical_entity + +equivalentTo: + text: "'has_part' some ( + 'deviation_towards_the_medial_side' + and ('characteristic_of' some %s) + and ('has_modifier' some 'abnormal') + )" + vars: + - anatomical_entity +...