diff --git a/src/patterns/dosdp-dev/abnormallyDisruptedBiologicalProcess.yaml b/src/patterns/dosdp-dev/abnormallyDisruptedBiologicalProcess.yaml new file mode 100644 index 00000000..d339226a --- /dev/null +++ b/src/patterns/dosdp-dev/abnormallyDisruptedBiologicalProcess.yaml @@ -0,0 +1,37 @@ +pattern_name: abnormallyDisruptedBiologicalProcess +pattern_iri: http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDisruptedBiologicalProcess.yaml +description: "An interruption of a biological process of its normal course, such as disrupted plasminogen activation." + +contributors: + - https://orcid.org/0000-0002-9611-1279 + +classes: + disrupted: PATO:0001507 + abnormal: PATO:0000460 + biological_process: GO:0008150 + +relations: + inheres_in: RO:0000052 + has_modifier: RO:0002573 + has_part: BFO:0000051 + +annotationProperties: + exact_synonym: oio:hasExactSynonym + +vars: + biological_process: "'biological_process'" + +name: + text: "disrupted %s" + vars: + - biological_process + +def: + text: "Disrupted %s." + vars: + - biological_process + +equivalentTo: + text: "'has_part' some ('disrupted' and ('inheres_in' some %s) and ('has_modifier' some 'abnormal'))" + vars: + - biological_process diff --git a/src/patterns/dosdp-dev/mislocalisedBiologicalProcess.yaml b/src/patterns/dosdp-dev/mislocalisedBiologicalProcess.yaml new file mode 100644 index 00000000..da8bfc01 --- /dev/null +++ b/src/patterns/dosdp-dev/mislocalisedBiologicalProcess.yaml @@ -0,0 +1,37 @@ +pattern_name: mislocalisedBiologicalProcess +pattern_iri: http://purl.obolibrary.org/obo/upheno/patterns-dev/mislocalisedBiologicalProcess.yaml +description: "Abnormal anatomic location of a biological process, such as an immune response." + +contributors: + - https://orcid.org/0000-0002-9611-1279 + +classes: + mislocalised: PATO:0000628 + abnormal: PATO:0000460 + biological_process: GO:0008150 + +relations: + inheres_in: RO:0000052 + has_modifier: RO:0002573 + has_part: BFO:0000051 + +annotationProperties: + exact_synonym: oio:hasExactSynonym + +vars: + biological_process: "'biological_process'" + +name: + text: "mislocalised %s" + vars: + - biological_process + +def: + text: "Mislocalised %s." + vars: + - biological_process + +equivalentTo: + text: "'has_part' some ('mislocalised' and ('inheres_in' some %s) and ('has_modifier' some 'abnormal'))" + vars: + - biological_process diff --git a/src/patterns/dosdp-dev/mislocalisedMolecularFunction.yaml b/src/patterns/dosdp-dev/mislocalisedMolecularFunction.yaml new file mode 100644 index 00000000..df2579b6 --- /dev/null +++ b/src/patterns/dosdp-dev/mislocalisedMolecularFunction.yaml @@ -0,0 +1,37 @@ +pattern_name: mislocalisedMolecularFunction +pattern_iri: http://purl.obolibrary.org/obo/upheno/patterns-dev/mislocalisedMolecularFunction.yaml +description: "Abnormal cellular location of a molecular function, such as ribosome biogenesis." + +contributors: + - https://orcid.org/0000-0002-9611-1279 + +classes: + mislocalised: PATO:0000628 + abnormal: PATO:0000460 + molecular function: GO:0003674 + +relations: + inheres_in: RO:0000052 + has_modifier: RO:0002573 + has_part: BFO:0000051 + +annotationProperties: + exact_synonym: oio:hasExactSynonym + +vars: + molecular_function: "'molecular function'" + +name: + text: "mislocalised %s" + vars: + - molecular_function + +def: + text: "Mislocalised %s." + vars: + - molecular_function + +equivalentTo: + text: "'has_part' some ('mislocalised' and ('inheres_in' some %s) and ('has_modifier' some 'abnormal'))" + vars: + - molecular_function