From 511c5d0029b573c767f60b2ee13ecbc5565a2dec Mon Sep 17 00:00:00 2001 From: William Moore Date: Tue, 15 Oct 2024 11:09:27 +0100 Subject: [PATCH] Add series0 column to flamingo.csv. Used for Thumbnail image path --- ome2024-ngff-challenge/src/ZarrListItem.svelte | 8 ++++++-- samples/flamingo.csv | 8 ++++---- 2 files changed, 10 insertions(+), 6 deletions(-) diff --git a/ome2024-ngff-challenge/src/ZarrListItem.svelte b/ome2024-ngff-challenge/src/ZarrListItem.svelte index b83e534..2e613c6 100644 --- a/ome2024-ngff-challenge/src/ZarrListItem.svelte +++ b/ome2024-ngff-challenge/src/ZarrListItem.svelte @@ -4,7 +4,6 @@ import { loadMultiscales } from "./tableStore"; import Thumbnail from "./Thumbnail.svelte"; import omeLogo from '/ome-logomark.svg'; - import vizarrLogo from '/vizarr_logo.png'; export let rowData; export let textFilter; @@ -28,7 +27,12 @@ } onMount(async () => { - let img = await loadMultiscales(rowData.url); + let zarrUrl = rowData.url; + // If we know the path to first series, add it + if (rowData.series0 !== undefined) { + zarrUrl += "/" + rowData.series0; + } + let img = await loadMultiscales(zarrUrl); imgAttrs = img[0]; imgUrl = img[1]; plateAttrs = img[2]; // optional diff --git a/samples/flamingo.csv b/samples/flamingo.csv index 7cc5661..0c9ab10 100644 --- a/samples/flamingo.csv +++ b/samples/flamingo.csv @@ -1,4 +1,4 @@ -url,written,written_human_readable,shape,shards,chunks,dimension_names,license,name,description,organismId,fbbiId -https://radosgw.public.os.wwu.de/n4bi-goe/Platynereis-H2B-TL.ome.zarr,2352780058,2.35 GB,"192,1024,1024","512,512,512","128,128,128","z,y,x",,,,, -https://radosgw.public.os.wwu.de/n4bi-goe/Zebrafish-H2B-short-timelapse.ome.zarr,10417827625,10.42 GB,"322,2048,2048","512,512,512","128,128,128","z,y,x",,,,, -https://radosgw.public.os.wwu.de/n4bi-goe/Zebrafish-XSPIM-multiview.ome.zarr,7168396046,7.17 GB,"342,2048,2048","512,512,512","128,128,128","z,y,x",,,,, +url,written,written_human_readable,shape,shards,chunks,dimension_names,license,name,description,organismId,fbbiId,series0 +https://radosgw.public.os.wwu.de/n4bi-goe/Platynereis-H2B-TL.ome.zarr,2352780058,2.35 GB,"192,1024,1024","512,512,512","128,128,128","z,y,x",,,,,,setup0/timepoint0 +https://radosgw.public.os.wwu.de/n4bi-goe/Zebrafish-H2B-short-timelapse.ome.zarr,10417827625,10.42 GB,"322,2048,2048","512,512,512","128,128,128","z,y,x",,,,,,setup0/timepoint0 +https://radosgw.public.os.wwu.de/n4bi-goe/Zebrafish-XSPIM-multiview.ome.zarr,7168396046,7.17 GB,"342,2048,2048","512,512,512","128,128,128","z,y,x",,,,,,setup0/timepoint0