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None identical gene between eset and reference had been found. Check your eset using: intersect(rownames(eset), rownames(reference)) #168

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LeaLe88 opened this issue Feb 1, 2024 · 2 comments

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bug

LeaLe88 commented Feb 1, 2024 •

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Dear all,

I get above error as it was described in issue #124.

I was mentioned there that the CIBERSORT version, which is the same as mine, had a bug and was modified.

But it seems that the error is still existing.

Best Regards,
Lea

LeaLe88 added the bug label

LeaLe88 changed the title Error in CIBERSORT(sig_matrix = "/home/lea/BAZ2B_Project/Essential/Single_Cell/Cibersort/test_0.2_100_Signature.txt", : None identical gene between eset and reference had been found. Check your eset using: intersect(rownames(eset), rownames(reference)) None identical gene between eset and reference had been found. Check your eset using: intersect(rownames(eset), rownames(reference))

Author

LeaLe88 commented Feb 13, 2024

Good afternoon,

Anyone can help me with this?

Thank you!

Collaborator

LorenzoMerotto commented Apr 25, 2024

Hello,
we are unfortunately we aware of this issue, which has been described also in #137 .
You can use thiis Cibersort script
https://github.com/cansysbio/HGSOC_TME_Heterogeneity/blob/b697b8a6113d31196715f6ef581648237f8e9414/Scripts/3/CIBERSORT.R

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