NBIS - National Bioinformatics Infrastructure Sweden

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297 repositories

sda-cli
Public
User command line interface for the SDA
Go
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GNU Affero General Public License v3.0
•1•5•43•2•Updated Nov 18, 2024Nov 18, 2024
module-rstudio-intro-dm-practices
Public
R
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Other
•2•0•1•0•Updated Nov 18, 2024Nov 18, 2024
Containerized-Compute-Helm-Charts
Public
Fork for working on CC Helm charts
Shell
•1•0•0•0•Updated Nov 16, 2024Nov 16, 2024
workshop-reproducible-research
Public
NBIS/Elixir course: Tools for Reproducible Research
HTML
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Creative Commons Attribution 4.0 International
•32•58•0•1•Updated Nov 15, 2024Nov 15, 2024
workshop-python
Public
Apache License 2.0
•11•8•4•0•Updated Nov 15, 2024Nov 15, 2024
module-openrefine-dm-practices
Public
Ruby
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Other
•3•0•0•0•Updated Nov 15, 2024Nov 15, 2024
module-data-publication-dm-practices
Public
Ruby
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Other
•0•0•0•0•Updated Nov 15, 2024Nov 15, 2024
GenErode
Public
GitHub repository for GenErode, a Snakemake pipeline for the analysis of whole-genome sequencing data from historical and modern samples to study patterns of genome erosion.
Python
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GNU General Public License v3.0
•7•24•19•2•Updated Nov 15, 2024Nov 15, 2024
data-submission-documentation
Public
Documentation for data submissions from life science research in public repositories
Python
•0•3•0•1•Updated Nov 14, 2024Nov 14, 2024
beacon-production-prototype
Public
Python
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Apache License 2.0
•4•0•0•4•Updated Nov 14, 2024Nov 14, 2024
module-versioning-dm-practices
Public
Ruby
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Other
•0•0•1•0•Updated Nov 14, 2024Nov 14, 2024
module-r-intro-dm-practices
Public
R
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Other
•2•1•0•0•Updated Nov 14, 2024Nov 14, 2024
module-organising-data-dm-practices
Public
Ruby
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Other
•2•0•0•0•Updated Nov 14, 2024Nov 14, 2024
workshop-ngsintro
Public
Workshop • Intro to Bioinformatics using NGS data • 5 days
rnaseq variant-calling unix-shell ngs-analysis bioinformatics
HTML
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GNU General Public License v3.0
•6•13•0•0•Updated Nov 14, 2024Nov 14, 2024
workshop-epigenomics-RTDs
Public
workshop website on readthedocs
13•19•0•0•Updated Nov 14, 2024Nov 14, 2024
module-dmp-dm-practices
Public
dmp
Ruby
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Other
•1•1•0•0•Updated Nov 14, 2024Nov 14, 2024
module-open-science-dm-practices
Public
Open Science module for Data Management course (carpentries style)
Ruby
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Other
•1•2•0•0•Updated Nov 14, 2024Nov 14, 2024
module-metadata-dm-practices
Public
Metadata module for Data Management course (carpentries style)
Ruby
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Other
•0•1•0•0•Updated Nov 14, 2024Nov 14, 2024
sll_vr_reporting_utils
Public
Scripts used to dig out the data needed for the SciLifeLab and VR yearly reports.
Python
•1•0•0•0•Updated Nov 13, 2024Nov 13, 2024
Earth-Biogenome-Project-pilot
Public
Assembly and Annotation workflows for analysing data in the Earth Biogenome Project pilot project.
Nextflow
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GNU General Public License v3.0
•8•11•48•3•Updated Nov 12, 2024Nov 12, 2024
gdi-sweden-sops
Public
A repository for managing standard operating procedure (SOP) resources for the Swedish node of the GDI project.
Python
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GNU Affero General Public License v3.0
•3•0•0•0•Updated Nov 11, 2024Nov 11, 2024
workshop-scRNAseq-devel
Public
Single cell RNA sequencing analysis course
HTML
•99•0•0•0•Updated Nov 11, 2024Nov 11, 2024
urdr
Public
Timelogging system of NBIS
TypeScript
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GNU Affero General Public License v3.0
•1•0•52•15•Updated Nov 11, 2024Nov 11, 2024
teaching_literature_club
Public
NBIS' teaching literature club
club meeting teaching literature nbis
Mermaid
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GNU General Public License v3.0
•1•0•0•0•Updated Nov 9, 2024Nov 9, 2024
workshop-r
Public
Workshop • R Programming Foundations for Life Scientists • 5 days
r r-programming workshop life-scientists
CSS
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GNU General Public License v3.0
•10•7•0•0•Updated Nov 8, 2024Nov 8, 2024
assembly-project-template
Public template
This is a template for all assembly projects. Please read the instructions below on how to use it.
project-template genome-annotation genome-analysis genome-assembly
Shell
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MIT License
•1•3•1•1•Updated Nov 7, 2024Nov 7, 2024
vector-oligo-search
Public
Python
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GNU General Public License v3.0
•1•0•1•1•Updated Nov 7, 2024Nov 7, 2024
redmine_surveys_notifier
Public
This plugin allows to send a survey when a support issue is closed
Ruby
•0•2•1•0•Updated Nov 4, 2024Nov 4, 2024
tissue-adherent-VMB
Public
contains the code related to the article "Distinct cervical tissue-adherent and luminal microbiome communities correlate with mucosal host gene expression and protein levels in Kenyan sex workers"
HTML
•0•1•0•1•Updated Oct 28, 2024Oct 28, 2024
strobealign-evaluation
Public
Python
•0•0•0•0•Updated Oct 28, 2024Oct 28, 2024