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    656 repositories

    • GENIE-Sponsored-Projects

      Public
      This repository contains processing code for GENIE sponsored projects used for creating cBioPortal files
      genie
      Python
      •
      MIT License
      •1•5•5•3•Updated Feb 1, 2025Feb 1, 2025

    • Genie

      Public
      Validation and processing of GENIE files
      pythonetlgeniedpecomponc
      Python
      •
      MIT License
      •9•12•1•4•Updated Jan 31, 2025Jan 31, 2025

    • snowflake

      Public
      Snowflake Administration, Transformations, and Analytics
      snowflake
      Python
      •
      Apache License 2.0
      •4•5•0•3•Updated Jan 31, 2025Jan 31, 2025

    • SynapseWebClient

      Public
      The web client of the Synapse REST service core
      JavaScript
      •
      Apache License 2.0
      •40•23•1•8•Updated Jan 31, 2025Jan 31, 2025

    • synapse-web-monorepo

      Public
      Monorepo for Synapse Web projects
      TypeScript
      •23•5•3•39•Updated Jan 31, 2025Jan 31, 2025

    • Synapse-Stack-Builder

      Public
      Project for building a complete Synapse Stack
      Java
      •
      Apache License 2.0
      •20•5•0•1•Updated Jan 31, 2025Jan 31, 2025

    • Synapse-ETL-Jobs

      Public
      Synapse ETL jobs project will be maintaining all the ETL jobs for Synapse
      Python
      •5•0•0•0•Updated Jan 31, 2025Jan 31, 2025

    • Synapse-Repository-Services

      Public
      The Synapse Repository Services project is the home of the JSON REST web services for Synapse.
      Java
      •
      Apache License 2.0
      •54•38•0•6•Updated Jan 31, 2025Jan 31, 2025

    • synapsePythonClient

      Public
      Programmatic interface to Synapse services for Python
      synapsepython
      Python
      •
      Apache License 2.0
      •68•70•4•3•Updated Jan 31, 2025Jan 31, 2025

    • agora-data-manager

      Public
      Tool to manage agora data
      Shell
      •
      Apache License 2.0
      •10•0•0•1•Updated Jan 30, 2025Jan 30, 2025

    • agora-data-tools

      Public
      A place for Agora's ETL and Data Testing
      Jupyter Notebook
      •
      Apache License 2.0
      •3•1•0•1•Updated Jan 30, 2025Jan 30, 2025

    • data_curator_config

      Public
      Project configurations for the Data Curator App
      21•2•0•0•Updated Jan 30, 2025Jan 30, 2025

    • core-models

      Public
      Sage repository for data models and core models work
      Python
      •1•1•3•0•Updated Jan 30, 2025Jan 30, 2025

    • shiny-base

      Public
      Base Docker image for Shiny applications
      Dockerfile
      •1•0•0•1•Updated Jan 30, 2025Jan 30, 2025

    • genie-bpc-pipeline

      Public
      GENIE BPC pipeline scripts
      genie
      R
      •
      MIT License
      •1•3•0•3•Updated Jan 29, 2025Jan 29, 2025

    • genie-bpc-bladder-landscape-manu

      Public
      Analyses related to the GENIE BPC Bladder cohort. Intended for a landscape manuscript.
      R
      •0•1•0•0•Updated Jan 29, 2025Jan 29, 2025

    • sage-monorepo

      Public
      Where OpenChallenges, Agora, and other Sage open source apps are built
      angularopenapimonorepofull-stackfairdeveloper-experiencenxagoraspecification-firstsage-bionetworks
      TypeScript
      •
      Apache License 2.0
      •12•23•150•5•Updated Jan 28, 2025Jan 28, 2025

    • schematic

      Public
      Package for biomedical data model and metadata ingress management
      schemabiomedical-informaticsdata-ingress
      Python
      •
      MIT License
      •26•22•0•3•Updated Jan 28, 2025Jan 28, 2025

    • genie-bpc-quac-wrapper

      Public
      Wrapper for the GENIE BPC Quality Assurance Checklist for monitoring and notifications
      genie
      R
      •
      MIT License
      •1•0•0•0•Updated Jan 27, 2025Jan 27, 2025

    • scicomp-provisioner

      Public
      An service to auto provision resources
      Jinja
      •
      Apache License 2.0
      •45•1•0•0•Updated Jan 27, 2025Jan 27, 2025

    • aws-infra

      Public
      Global Sage Bionetworks AWS Infrastructure
      scipool
      Jinja
      •
      Apache License 2.0
      •14•8•0•0•Updated Jan 22, 2025Jan 22, 2025

    • s3-synapse-sync

      Public
      Python
      •
      Apache License 2.0
      •7•4•3•0•Updated Jan 17, 2025Jan 17, 2025

    • AD-git-demo

      Public
      A project for AD DCC team github demonstration
      0•0•0•0•Updated Jan 14, 2025Jan 14, 2025

    • iAtlas-infra

      Public
      Shell
      •
      Apache License 2.0
      •5•2•0•0•Updated Jan 14, 2025Jan 14, 2025

    • data_curator-infra

      Public
      CDK-based template for deploying a containerized application to AWS
      Python
      •6•1•0•0•Updated Jan 9, 2025Jan 9, 2025

    • data_curator

      Public
      Data and metadata ingress app
      R
      •
      Apache License 2.0
      •20•10•49•0•Updated Jan 9, 2025Jan 9, 2025

    • challengeutils

      Public
      Synapse challenge utility functions
      pythonbenchmarkingchallengesynapsedream
      Python
      •
      Apache License 2.0
      •10•4•0•0•Updated Jan 7, 2025Jan 7, 2025

    • genie-main-200k

      Public
      A subset of analyses accompanying the "200k" paper (celebrating 200,000 samples milestone in GENIE). Only analyses run by Sage people are currently included.
      R
      •0•0•0•0•Updated Jan 5, 2025Jan 5, 2025

    • aws-htan-infra

      Public
      AWS CloudFormation templates for deploying HTAN infrastructure
      Apache License 2.0
      •5•1•1•0•Updated Jan 3, 2025Jan 3, 2025

    • Sage_Website_public_assets

      Public
      Public assets needed for the Sage Website
      HTML
      •0•0•0•0•Updated Jan 2, 2025Jan 2, 2025