dms-vep

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29 repositories

HIV_Envelope_TRO11_DMS_3BNC117_10-1074
Public
Deep mutational scanning using HIV Envelope strain TRO11 to identify mutations that escape neutralization by antibodies 3BNC117 and 10-1074
Jupyter Notebook
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MIT License
•0•0•0•0•Updated Jan 29, 2025Jan 29, 2025
HIV_Envelope_BF520_DMS_3BNC117_10-1074
Public
Deep mutational scanning using HIV Envelope strain BF520 to identify mutations that escape neutralization by antibodies 3BNC117 and 10-1074
Jupyter Notebook
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MIT License
•0•0•0•0•Updated Jan 29, 2025Jan 29, 2025
LASV_Josiah_GP_DMS_Scripps_mABs
Public
Analysis of DMS data for monoclonal antibodies from Scripps on Lassa virus GP using dms-vep-pipeline-3
HTML
•0•0•0•0•Updated Jan 22, 2025Jan 22, 2025
SARS-CoV-2_XBB.1.5_spike_DMS_infant_sera
Public
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Other
•0•0•0•0•Updated Jan 21, 2025Jan 21, 2025
SARS-CoV-2_XBB.1.5_spike_DMS_Barnes_mAbs
Public
HTML
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Other
•0•0•0•0•Updated Jan 10, 2025Jan 10, 2025
dms-vep-pipeline-3
Public
Pipeline for analyzing deep mutational scanning (DMS) of viral entry proteins (VEPs)
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Other
•0•2•5•0•Updated Jan 3, 2025Jan 3, 2025
Flu_H5_American-Wigeon_South-Carolina_2021-H5N1_DMS
Public
Deep mutational scanning of H5 VEP
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Other
•1•2•0•0•Updated Dec 31, 2024Dec 31, 2024
RABV_Pasteur_G_DMS
Public
Deep mutational scan of the Rabies Virus Glycoprotein (RABV-G), Pasteur strain
HTML
•0•1•0•0•Updated Dec 19, 2024Dec 19, 2024
Nipah_Malaysia_RBP_DMS
Public
Analysis of DMS data on Nipah RBP using dms-vep-pipeline-3
HTML
•0•1•0•0•Updated Dec 17, 2024Dec 17, 2024
dms-vep.github.io
Public
Vue
•1•0•1•0•Updated Oct 1, 2024Oct 1, 2024
SARS-CoV-2_XBB.1.5_spike_DMS
Public
Jupyter Notebook
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Other
•1•5•0•0•Updated Sep 22, 2024Sep 22, 2024
flu_h3_hk19_dms
Public
Analysis of a multi-mutant, barcoded influenza H3 library in the A/HongKong/45/2019 background.
Jupyter Notebook
•1•0•0•1•Updated Aug 20, 2024Aug 20, 2024
LASV_Josiah_GP_DMS
Public
Analysis of DMS data on Lassa virus GP using dms-vep-pipeline-3
HTML
•0•1•0•0•Updated Jul 17, 2024Jul 17, 2024
SARS-CoV-2_Omicron_BA.2_spike_ACE2_binding
Public
Jupyter Notebook
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Other
•0•0•0•0•Updated Apr 16, 2024Apr 16, 2024
SARS-CoV-2_XBB.1.5_RBD_DMS
Public
Jupyter Notebook
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Other
•0•0•2•0•Updated Apr 16, 2024Apr 16, 2024
SARS-CoV-2_XBB.1.5_RBD_DMS_SC27
Public
Jupyter Notebook
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Other
•0•0•0•0•Updated Mar 7, 2024Mar 7, 2024
SARS-CoV-2_XBB.1.5_RBD_DMS_mAB-52
Public
Jupyter Notebook
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Other
•0•0•0•0•Updated Feb 20, 2024Feb 20, 2024
HIV_Envelope_BF520_DMS_04-A06
Public
Deep mutational scanning using HIV Envelope strain BF520 to map escape from antibody 04-A06
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MIT License
•0•0•0•0•Updated Jan 24, 2024Jan 24, 2024
dms-vep-pipeline
Public
Pipeline for analyzing deep mutational scanning (DMS) of viral entry proteins (VEPs)
Jupyter Notebook
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Other
•0•3•0•0•Updated Sep 28, 2023Sep 28, 2023
SARS-CoV-2_Omicron_BA.2_spike_DMS
Public
Jupyter Notebook
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Other
•0•1•0•0•Updated Aug 22, 2023Aug 22, 2023
SARS-CoV-2_Omicron_BA.2_spike_DMS_sera_and_mAbs
Public
Jupyter Notebook
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Other
•0•0•0•0•Updated Jun 12, 2023Jun 12, 2023
HIV_Envelope_BF520_DMS_CD4bs_sera
Public
Deep mutational scanning of HIV Envelope BF520 with anti-CD4 binding site sera and antibodies
Jupyter Notebook
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MIT License
•0•0•0•0•Updated May 17, 2023May 17, 2023
spike_library_design
Public
Design primers for mutagenesis to create spike libraries
Jupyter Notebook
•0•0•0•0•Updated Mar 16, 2023Mar 16, 2023
SARS-CoV-2_Omicron_BA.2_spike_DMS_COV2-2130
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Other
•0•0•0•0•Updated Feb 18, 2023Feb 18, 2023
SARS-CoV-2_Omicron_BA.1_spike_DMS_COV2-2130
Public
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•0•1•0•0•Updated Feb 18, 2023Feb 18, 2023
SARS-CoV-2_Omicron_BA.1_spike_DMS_12-19
Public
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•0•0•0•0•Updated Feb 10, 2023Feb 10, 2023
SARS-CoV-2_Delta_spike_DMS_REGN10933
Public
Deep mutational scanning of SARS-CoV-2 Delta spike against REGN10933
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•0•2•0•0•Updated Jan 2, 2023Jan 2, 2023
SARS-CoV-2_Omicron_BA.1_spike_DMS_mAbs
Public
Deep mutational scanning of SARS-CoV-2 Omicron BA.1 spike against RBD, NTD, and S2 antibodies
Jupyter Notebook
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Other
•1•1•0•0•Updated Jan 2, 2023Jan 2, 2023
SARS-CoV-2_Omicron_BA.1_spike_DMS_C68.59
Public
Jupyter Notebook
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Other
•0•0•0•0•Updated Nov 30, 2022Nov 30, 2022