Repositories list

• pa-generate

  Public
  Generate random sequence pairs to test pairwise aligners

  data-generatorpairwise-alignment

  Rust

  •

  MIT License

  •0•1•0•0•Updated Mar 4, 2025Mar 4, 2025

• edlib-rs

  Public
  rust binding to edlib

  Rust

  •6•0•0•0•Updated Feb 8, 2025Feb 8, 2025

• pa-bench

  Public
  Benchmarking pairwise aligners

  benchmarkpairwise-alignment

  Jupyter Notebook

  •

  MIT License

  •1•36•4•0•Updated Feb 8, 2025Feb 8, 2025

• pa-extend

  Public
  Jupyter Notebook

  •0•1•0•0•Updated Feb 8, 2025Feb 8, 2025

• pa-bench-paper

  Public
  0•0•0•0•Updated Mar 27, 2024Mar 27, 2024

• pa-types

  Public
  Basic types and functions for pairwise alignment.

  librarybioinformaticspairwise-alignment

  Rust

  •

  MIT License

  •0•3•0•0•Updated Mar 22, 2024Mar 22, 2024

• ksw2

  Public
  Global alignment and alignment extension, with added band doubling

  C

  •

  Other

  •26•0•0•0•Updated Jun 27, 2023Jun 27, 2023

• rust-wfa2

  Public
  Rust binding for WFA2-lib

  Rust

  •

  MIT License

  •6•4•0•0•Updated Jun 26, 2023Jun 26, 2023

• .github

  Public
  Org readme

  0•0•0•0•Updated Mar 22, 2023Mar 22, 2023

• ksw2-sys

  Public
  Rust bindings for ksw2 alignment library

  Rust

  •1•0•0•0•Updated Feb 8, 2023Feb 8, 2023

• bam2seq

  Public
  Converts a BAM file to reads and reconstructed references using the CIGAR and MD tag.

  Rust

  •0•5•0•0•Updated Oct 28, 2022Oct 28, 2022