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The issue of data usage #7

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yyly6 opened this issue Apr 25, 2024 · 0 comments
Open

The issue of data usage #7

yyly6 opened this issue Apr 25, 2024 · 0 comments

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@yyly6
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yyly6 commented Apr 25, 2024

Hello! I noticed that in the data you provided, some sequences do not begin with "ATG", for example, 'TTGAAAAGAAAAGCCAGTATCATGTTTGTCCATCAAGACAAGTACGAAGAATACAAACAGCGGCATGATGACATTTGGCCTGAGATGGCAGAAGCACTCAAAGCTCATGGAGCACACCATTATTCCATTTTTCTAGACGAGGAAACAGGCAGGCTTTTTGCATATTTAGAAATAGAGGATGAAGAGAAATGGAGAAAGATGGCGGACACGGAAGTTTGCCAAAGATGGTGGAAATCGATGGCGCCATTAATGAAAACAAATTCGGATTTCAGTCCTGTTGCGATAGATCTAAAGGAAGTTTTTTATTTGGATTGA'.
When tokenizing, should I discard the part before ATG and start from ATG, or should I just use the entire sequence as it is?
Similarly, when translating it into an amino acid sequence, should I translate the entire sequence directly or start translating from ATG?
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