build.xml

<?xml version="1.0" encoding="utf-8"?>

<!-- ============================================================= -->
<project name="BLAST Filter Tool" default="help" basedir=".">

<property file="${basedir}/src/bzh/plealog/bioinfo/bft/version.properties"/>

<property name="pbc.libName"    value="${prg.name}" />
<property name="pbc.LibVersion" value="${prg.version}" />

<property name="compile.optimize" value="on" />
<property name="compile.debug"    value="off" />

<property name="src"     value="${basedir}/src" />
<property name="jar"     value="${basedir}/jar" />

<property name="distrib"  value="${basedir}/distrib" />
<property name="Dlib"     value="${distrib}/lib" />
<property name="Dsrc"     value="${distrib}/src" />
<property name="Ddoc"     value="${distrib}/doc" />
<property name="Ddoc.api" value="${Ddoc}/api" />

<property name="pbc.libJar"  value="${distrib}/${pbc.libName}-${pbc.LibVersion}.jar"/>

<path id="class.path">
    <pathelement path="${classpath}"/>
    <fileset dir="${jar}">
      <include name="**/*.jar"/>
    </fileset>
    <pathelement location="${Dlib}"/>
</path>

<!-- ============================================================= -->
<target name="help">
  <echo>Ant task to handle BLAST Filter Tool project.</echo>
  <echo/>
  <echo>      compile: compile the code.</echo>
  <echo>         jdoc: compile the Javadoc.</echo>
  <echo>  makedistrib: compile and make JAR of the Filter system.</echo>
</target>

<!-- ============================================================= -->
<target name="prepare">
    <delete dir="${distrib}"/>
    <mkdir  dir="${Dlib}"/>
    <mkdir  dir="${Dsrc}"/>
    <mkdir  dir="${Ddoc.api}"/>
</target>

<!-- ============================================================= -->
<target name="compile" depends="prepare">
   <copy todir="${Dsrc}">
      <fileset dir="${src}">
         <include name="bzh/plealog/bioinfo/**"/>
      </fileset>
    </copy>
   <javac srcdir="${Dsrc}"
          destdir="${Dlib}"
	        classpathref="class.path"
          debug="${compile.debug}"
          optimize="${compile.optimize}"
          >
   </javac>
  <copy todir="${Dlib}/bzh/plealog/bioinfo/">
    <fileset dir="${Dsrc}/bzh/plealog/bioinfo/">
        <include name="**/*properties"/>
    </fileset>
  </copy>
</target>

<!-- ============================================================= -->
<target name="makedistrib" depends="compile" >
    <jar destfile="${pbc.libJar}">
      <fileset dir="${Dlib}">
        <include name="bzh/plealog/bioinfo/**"/>
      </fileset>
      <restrict>
         <name name="**/*"/>
         <archives>
           <zips>
             <fileset dir="jar" includes="**/*.jar"/>
           </zips>
         </archives>
      </restrict>
      <manifest>
        <attribute name="Main-Class" value="bzh.plealog.bioinfo.bft.Main"/>
        <attribute name="Built-By" value="Patrick G. Durand"/>
        <attribute name="Title" value="${prg.name}"/>
        <attribute name="Version" value="${prg.version}"/>
      </manifest>
    </jar>
	  <jar destfile="${pbc.libJar}" update="true">
	    <zipfileset dir="${basedir}" includes="*.txt"/>
	  </jar>
</target>

<!-- =================================================================== -->
<!-- target to create JavaDoc                                     -->
<!-- =================================================================== -->
<target name="jdoc">
  <delete dir="${Ddoc.api}" />
  <mkdir dir="${Ddoc.api}" />
  <javadoc
    packagenames="bzh.plealog.bioinfo.*"
    excludepackagenames="test"
    Overview="${src}/overview.html" 
    Private="false" 
    Splitindex="true" 
    Windowtitle="Blast Filter Tool API" 
    author="true" 
    classpathref="class.path" 
    destdir="${Ddoc.api}" 
    maxmemory="256M" 
    sourcepath="${src}" 
    version="true">
    <bottom>
      <![CDATA[(c) Patrick G. Durand - 2004-2016]]>
    </bottom>
    <header>
      <![CDATA[Blast Filter Tool API]]></header>
    <link href="https://docs.oracle.com/javase/6/docs/api/"/>
    <!-- arg value="-Xdoclint:reference"/ -->
  </javadoc>
</target>
	

</project>