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Use numpy to compute q-scores more efficiently #19

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philres opened this issue Jan 13, 2022 · 0 comments

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philres commented Jan 13, 2022

catfishq/catfishq/cat_fastq.py

Line 36 in 4c42039

sum_prob += LOOKUP[val]

Check if pysam returns numpy arrays. If it does use numpy to compute probabilities from phred scores more efficiently
Alternative: cython implementation of q-score computation

philres added the code-review label

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