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Find out how to set up an automated BioCyc using GO MF data #2234

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ValWood opened this issue Sep 10, 2024 · 4 comments
Open

Find out how to set up an automated BioCyc using GO MF data #2234

ValWood opened this issue Sep 10, 2024 · 4 comments
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ValWood commented Sep 10, 2024

Find out how to set up an automated BioCyc using GO MF data
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ValWood commented Sep 10, 2024 •
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ANd generate a pathway holes report (this will be useful for "unknowns" projects

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ValWood commented Oct 1, 2024

This is the most recent paper about the tools https://arxiv.org/abs/1510.03964v3
This 15min tutorial might be useful to watch first to see the capabilities
https://www.youtube.com/watch?v=e7f-XluS3aA&feature=youtu.be

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ValWood commented Oct 1, 2024

This is the SGD tool using metacyc software https://pathway.yeastgenome.org/ (which is different from the one provided by biocyc)

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ValWood commented Oct 11, 2024

Another useful feature of this (although it will only include metabolism, will be a nice feature)

biocyc

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