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using "located_in" for locations where the gene product is not active #2298

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ValWood opened this issue Dec 10, 2024 · 2 comments
Open

using "located_in" for locations where the gene product is not active #2298

ValWood opened this issue Dec 10, 2024 · 2 comments

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@ValWood
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ValWood commented Dec 10, 2024

It seems this is allowed:
https://wiki.geneontology.org/Located_in

we just need to classify our annotations.

We could make everything located in except
i) annotations used in MF extensions -> ia_active in
ii) annotations used in GO-CAMs (although this should be a subset of i)
iii) annotations transferred by IBA, ISO, ISS should only be is_active_in

this would classify most correctly, and we could migrate the remaining slowly.

Issues, would need to enable in canto, and display on the website (and enable a filter)

@kimrutherford
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i) annotations used in MF extensions -> ia_active in
ii) annotations used in GO-CAMs (although this should be a subset of i)

Could you explain those?

@ValWood ValWood self-assigned this Dec 12, 2024
@ValWood
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ValWood commented Dec 12, 2024

Need to think abiut this more. Follow up in New year

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