From 0df746404f0656260998d3edfc33b210ae85d44e Mon Sep 17 00:00:00 2001 From: Jon Harmon Date: Fri, 19 Jan 2024 06:59:16 -0600 Subject: [PATCH 1/2] Populate chapter placeholders. --- 01_types-of-spatial-data.Rmd | 24 +++++++++++++++++++ 99999.Rmd => 02_spatial-data-in-r.Rmd | 2 +- 03_the-sf-package-for-spatial-vector-data.Rmd | 24 +++++++++++++++++++ ...rra-package-for-raster-and-vector-data.Rmd | 24 +++++++++++++++++++ 05_making-maps-with-r.Rmd | 24 +++++++++++++++++++ ...packages-to-download-open-spatial-data.Rmd | 24 +++++++++++++++++++ 07_spatial-neighborhood-matrices.Rmd | 24 +++++++++++++++++++ 08_spatial-autocorrelation.Rmd | 24 +++++++++++++++++++ 09_bayesian-spatial-models.Rmd | 24 +++++++++++++++++++ 10_disease-risk-modeling.Rmd | 24 +++++++++++++++++++ 11_areal-data-issues.Rmd | 24 +++++++++++++++++++ 12_geostatistical-data.Rmd | 24 +++++++++++++++++++ 13_spatial-interpolation-methods.Rmd | 24 +++++++++++++++++++ 14_kriging.Rmd | 24 +++++++++++++++++++ 15_model-based-geostatistics.Rmd | 24 +++++++++++++++++++ 16_methods-assessment.Rmd | 24 +++++++++++++++++++ 17_spatial-point-patterns.Rmd | 24 +++++++++++++++++++ 18_the-spatstat-package.Rmd | 24 +++++++++++++++++++ 19_spatial-point-processes-and-simulation.Rmd | 24 +++++++++++++++++++ 20_complete-spatial-randomness.Rmd | 24 +++++++++++++++++++ 21_intensity-estimation.Rmd | 24 +++++++++++++++++++ 22_the-k-function.Rmd | 24 +++++++++++++++++++ 23_point-process-modeling.Rmd | 24 +++++++++++++++++++ 23 files changed, 529 insertions(+), 1 deletion(-) create mode 100644 01_types-of-spatial-data.Rmd rename 99999.Rmd => 02_spatial-data-in-r.Rmd (94%) create mode 100644 03_the-sf-package-for-spatial-vector-data.Rmd create mode 100644 04_the-terra-package-for-raster-and-vector-data.Rmd create mode 100644 05_making-maps-with-r.Rmd create mode 100644 06_r-packages-to-download-open-spatial-data.Rmd create mode 100644 07_spatial-neighborhood-matrices.Rmd create mode 100644 08_spatial-autocorrelation.Rmd create mode 100644 09_bayesian-spatial-models.Rmd create mode 100644 10_disease-risk-modeling.Rmd create mode 100644 11_areal-data-issues.Rmd create mode 100644 12_geostatistical-data.Rmd create mode 100644 13_spatial-interpolation-methods.Rmd create mode 100644 14_kriging.Rmd create mode 100644 15_model-based-geostatistics.Rmd create mode 100644 16_methods-assessment.Rmd create mode 100644 17_spatial-point-patterns.Rmd create mode 100644 18_the-spatstat-package.Rmd create mode 100644 19_spatial-point-processes-and-simulation.Rmd create mode 100644 20_complete-spatial-randomness.Rmd create mode 100644 21_intensity-estimation.Rmd create mode 100644 22_the-k-function.Rmd create mode 100644 23_point-process-modeling.Rmd diff --git a/01_types-of-spatial-data.Rmd b/01_types-of-spatial-data.Rmd new file mode 100644 index 0000000..ff9f43e --- /dev/null +++ b/01_types-of-spatial-data.Rmd @@ -0,0 +1,24 @@ +# Types of spatial data + +**Learning objectives:** + +- THESE ARE NICE TO HAVE BUT NOT ABSOLUTELY NECESSARY + +## SLIDE 1 {-} + +- ADD SLIDES AS SECTIONS (`##`). +- TRY TO KEEP THEM RELATIVELY SLIDE-LIKE; THESE ARE NOTES, NOT THE BOOK ITSELF. + +## Meeting Videos {-} + +### Cohort 1 {-} + +`r knitr::include_url("https://www.youtube.com/embed/URL")` + +
+ Meeting chat log + +``` +LOG +``` +
diff --git a/99999.Rmd b/02_spatial-data-in-r.Rmd similarity index 94% rename from 99999.Rmd rename to 02_spatial-data-in-r.Rmd index 0c587c2..c71614a 100644 --- a/99999.Rmd +++ b/02_spatial-data-in-r.Rmd @@ -1,4 +1,4 @@ -# {{{chapter_title}}} +# Spatial data in R **Learning objectives:** diff --git a/03_the-sf-package-for-spatial-vector-data.Rmd b/03_the-sf-package-for-spatial-vector-data.Rmd new file mode 100644 index 0000000..2bd55a2 --- /dev/null +++ b/03_the-sf-package-for-spatial-vector-data.Rmd @@ -0,0 +1,24 @@ +# The sf package for spatial vector data + +**Learning objectives:** + +- THESE ARE NICE TO HAVE BUT NOT ABSOLUTELY NECESSARY + +## SLIDE 1 {-} + +- ADD SLIDES AS SECTIONS (`##`). +- TRY TO KEEP THEM RELATIVELY SLIDE-LIKE; THESE ARE NOTES, NOT THE BOOK ITSELF. + +## Meeting Videos {-} + +### Cohort 1 {-} + +`r knitr::include_url("https://www.youtube.com/embed/URL")` + +
+ Meeting chat log + +``` +LOG +``` +
diff --git a/04_the-terra-package-for-raster-and-vector-data.Rmd b/04_the-terra-package-for-raster-and-vector-data.Rmd new file mode 100644 index 0000000..9f028a6 --- /dev/null +++ b/04_the-terra-package-for-raster-and-vector-data.Rmd @@ -0,0 +1,24 @@ +# The terra package for raster and vector data + +**Learning objectives:** + +- THESE ARE NICE TO HAVE BUT NOT ABSOLUTELY NECESSARY + +## SLIDE 1 {-} + +- ADD SLIDES AS SECTIONS (`##`). +- TRY TO KEEP THEM RELATIVELY SLIDE-LIKE; THESE ARE NOTES, NOT THE BOOK ITSELF. + +## Meeting Videos {-} + +### Cohort 1 {-} + +`r knitr::include_url("https://www.youtube.com/embed/URL")` + +
+ Meeting chat log + +``` +LOG +``` +
diff --git a/05_making-maps-with-r.Rmd b/05_making-maps-with-r.Rmd new file mode 100644 index 0000000..c49a180 --- /dev/null +++ b/05_making-maps-with-r.Rmd @@ -0,0 +1,24 @@ +# Making maps with R + +**Learning objectives:** + +- THESE ARE NICE TO HAVE BUT NOT ABSOLUTELY NECESSARY + +## SLIDE 1 {-} + +- ADD SLIDES AS SECTIONS (`##`). +- TRY TO KEEP THEM RELATIVELY SLIDE-LIKE; THESE ARE NOTES, NOT THE BOOK ITSELF. + +## Meeting Videos {-} + +### Cohort 1 {-} + +`r knitr::include_url("https://www.youtube.com/embed/URL")` + +
+ Meeting chat log + +``` +LOG +``` +
diff --git a/06_r-packages-to-download-open-spatial-data.Rmd b/06_r-packages-to-download-open-spatial-data.Rmd new file mode 100644 index 0000000..368627c --- /dev/null +++ b/06_r-packages-to-download-open-spatial-data.Rmd @@ -0,0 +1,24 @@ +# R packages to download open spatial data + +**Learning objectives:** + +- THESE ARE NICE TO HAVE BUT NOT ABSOLUTELY NECESSARY + +## SLIDE 1 {-} + +- ADD SLIDES AS SECTIONS (`##`). +- TRY TO KEEP THEM RELATIVELY SLIDE-LIKE; THESE ARE NOTES, NOT THE BOOK ITSELF. + +## Meeting Videos {-} + +### Cohort 1 {-} + +`r knitr::include_url("https://www.youtube.com/embed/URL")` + +
+ Meeting chat log + +``` +LOG +``` +
diff --git a/07_spatial-neighborhood-matrices.Rmd b/07_spatial-neighborhood-matrices.Rmd new file mode 100644 index 0000000..f741a9c --- /dev/null +++ b/07_spatial-neighborhood-matrices.Rmd @@ -0,0 +1,24 @@ +# Spatial neighborhood matrices + +**Learning objectives:** + +- THESE ARE NICE TO HAVE BUT NOT ABSOLUTELY NECESSARY + +## SLIDE 1 {-} + +- ADD SLIDES AS SECTIONS (`##`). +- TRY TO KEEP THEM RELATIVELY SLIDE-LIKE; THESE ARE NOTES, NOT THE BOOK ITSELF. + +## Meeting Videos {-} + +### Cohort 1 {-} + +`r knitr::include_url("https://www.youtube.com/embed/URL")` + +
+ Meeting chat log + +``` +LOG +``` +
diff --git a/08_spatial-autocorrelation.Rmd b/08_spatial-autocorrelation.Rmd new file mode 100644 index 0000000..302b0a5 --- /dev/null +++ b/08_spatial-autocorrelation.Rmd @@ -0,0 +1,24 @@ +# Spatial autocorrelation + +**Learning objectives:** + +- THESE ARE NICE TO HAVE BUT NOT ABSOLUTELY NECESSARY + +## SLIDE 1 {-} + +- ADD SLIDES AS SECTIONS (`##`). +- TRY TO KEEP THEM RELATIVELY SLIDE-LIKE; THESE ARE NOTES, NOT THE BOOK ITSELF. + +## Meeting Videos {-} + +### Cohort 1 {-} + +`r knitr::include_url("https://www.youtube.com/embed/URL")` + +
+ Meeting chat log + +``` +LOG +``` +
diff --git a/09_bayesian-spatial-models.Rmd b/09_bayesian-spatial-models.Rmd new file mode 100644 index 0000000..70c2058 --- /dev/null +++ b/09_bayesian-spatial-models.Rmd @@ -0,0 +1,24 @@ +# Bayesian spatial models + +**Learning objectives:** + +- THESE ARE NICE TO HAVE BUT NOT ABSOLUTELY NECESSARY + +## SLIDE 1 {-} + +- ADD SLIDES AS SECTIONS (`##`). +- TRY TO KEEP THEM RELATIVELY SLIDE-LIKE; THESE ARE NOTES, NOT THE BOOK ITSELF. + +## Meeting Videos {-} + +### Cohort 1 {-} + +`r knitr::include_url("https://www.youtube.com/embed/URL")` + +
+ Meeting chat log + +``` +LOG +``` +
diff --git a/10_disease-risk-modeling.Rmd b/10_disease-risk-modeling.Rmd new file mode 100644 index 0000000..8054d6e --- /dev/null +++ b/10_disease-risk-modeling.Rmd @@ -0,0 +1,24 @@ +# Disease risk modeling + +**Learning objectives:** + +- THESE ARE NICE TO HAVE BUT NOT ABSOLUTELY NECESSARY + +## SLIDE 1 {-} + +- ADD SLIDES AS SECTIONS (`##`). +- TRY TO KEEP THEM RELATIVELY SLIDE-LIKE; THESE ARE NOTES, NOT THE BOOK ITSELF. + +## Meeting Videos {-} + +### Cohort 1 {-} + +`r knitr::include_url("https://www.youtube.com/embed/URL")` + +
+ Meeting chat log + +``` +LOG +``` +
diff --git a/11_areal-data-issues.Rmd b/11_areal-data-issues.Rmd new file mode 100644 index 0000000..e6c056a --- /dev/null +++ b/11_areal-data-issues.Rmd @@ -0,0 +1,24 @@ +# Areal data issues + +**Learning objectives:** + +- THESE ARE NICE TO HAVE BUT NOT ABSOLUTELY NECESSARY + +## SLIDE 1 {-} + +- ADD SLIDES AS SECTIONS (`##`). +- TRY TO KEEP THEM RELATIVELY SLIDE-LIKE; THESE ARE NOTES, NOT THE BOOK ITSELF. + +## Meeting Videos {-} + +### Cohort 1 {-} + +`r knitr::include_url("https://www.youtube.com/embed/URL")` + +
+ Meeting chat log + +``` +LOG +``` +
diff --git a/12_geostatistical-data.Rmd b/12_geostatistical-data.Rmd new file mode 100644 index 0000000..aaea382 --- /dev/null +++ b/12_geostatistical-data.Rmd @@ -0,0 +1,24 @@ +# Geostatistical data + +**Learning objectives:** + +- THESE ARE NICE TO HAVE BUT NOT ABSOLUTELY NECESSARY + +## SLIDE 1 {-} + +- ADD SLIDES AS SECTIONS (`##`). +- TRY TO KEEP THEM RELATIVELY SLIDE-LIKE; THESE ARE NOTES, NOT THE BOOK ITSELF. + +## Meeting Videos {-} + +### Cohort 1 {-} + +`r knitr::include_url("https://www.youtube.com/embed/URL")` + +
+ Meeting chat log + +``` +LOG +``` +
diff --git a/13_spatial-interpolation-methods.Rmd b/13_spatial-interpolation-methods.Rmd new file mode 100644 index 0000000..d27c0ab --- /dev/null +++ b/13_spatial-interpolation-methods.Rmd @@ -0,0 +1,24 @@ +# Spatial interpolation methods + +**Learning objectives:** + +- THESE ARE NICE TO HAVE BUT NOT ABSOLUTELY NECESSARY + +## SLIDE 1 {-} + +- ADD SLIDES AS SECTIONS (`##`). +- TRY TO KEEP THEM RELATIVELY SLIDE-LIKE; THESE ARE NOTES, NOT THE BOOK ITSELF. + +## Meeting Videos {-} + +### Cohort 1 {-} + +`r knitr::include_url("https://www.youtube.com/embed/URL")` + +
+ Meeting chat log + +``` +LOG +``` +
diff --git a/14_kriging.Rmd b/14_kriging.Rmd new file mode 100644 index 0000000..3e8763c --- /dev/null +++ b/14_kriging.Rmd @@ -0,0 +1,24 @@ +# Kriging + +**Learning objectives:** + +- THESE ARE NICE TO HAVE BUT NOT ABSOLUTELY NECESSARY + +## SLIDE 1 {-} + +- ADD SLIDES AS SECTIONS (`##`). +- TRY TO KEEP THEM RELATIVELY SLIDE-LIKE; THESE ARE NOTES, NOT THE BOOK ITSELF. + +## Meeting Videos {-} + +### Cohort 1 {-} + +`r knitr::include_url("https://www.youtube.com/embed/URL")` + +
+ Meeting chat log + +``` +LOG +``` +
diff --git a/15_model-based-geostatistics.Rmd b/15_model-based-geostatistics.Rmd new file mode 100644 index 0000000..7e63dfd --- /dev/null +++ b/15_model-based-geostatistics.Rmd @@ -0,0 +1,24 @@ +# Model-based geostatistics + +**Learning objectives:** + +- THESE ARE NICE TO HAVE BUT NOT ABSOLUTELY NECESSARY + +## SLIDE 1 {-} + +- ADD SLIDES AS SECTIONS (`##`). +- TRY TO KEEP THEM RELATIVELY SLIDE-LIKE; THESE ARE NOTES, NOT THE BOOK ITSELF. + +## Meeting Videos {-} + +### Cohort 1 {-} + +`r knitr::include_url("https://www.youtube.com/embed/URL")` + +
+ Meeting chat log + +``` +LOG +``` +
diff --git a/16_methods-assessment.Rmd b/16_methods-assessment.Rmd new file mode 100644 index 0000000..0dbec4c --- /dev/null +++ b/16_methods-assessment.Rmd @@ -0,0 +1,24 @@ +# Methods assessment + +**Learning objectives:** + +- THESE ARE NICE TO HAVE BUT NOT ABSOLUTELY NECESSARY + +## SLIDE 1 {-} + +- ADD SLIDES AS SECTIONS (`##`). +- TRY TO KEEP THEM RELATIVELY SLIDE-LIKE; THESE ARE NOTES, NOT THE BOOK ITSELF. + +## Meeting Videos {-} + +### Cohort 1 {-} + +`r knitr::include_url("https://www.youtube.com/embed/URL")` + +
+ Meeting chat log + +``` +LOG +``` +
diff --git a/17_spatial-point-patterns.Rmd b/17_spatial-point-patterns.Rmd new file mode 100644 index 0000000..d2094e5 --- /dev/null +++ b/17_spatial-point-patterns.Rmd @@ -0,0 +1,24 @@ +# Spatial point patterns + +**Learning objectives:** + +- THESE ARE NICE TO HAVE BUT NOT ABSOLUTELY NECESSARY + +## SLIDE 1 {-} + +- ADD SLIDES AS SECTIONS (`##`). +- TRY TO KEEP THEM RELATIVELY SLIDE-LIKE; THESE ARE NOTES, NOT THE BOOK ITSELF. + +## Meeting Videos {-} + +### Cohort 1 {-} + +`r knitr::include_url("https://www.youtube.com/embed/URL")` + +
+ Meeting chat log + +``` +LOG +``` +
diff --git a/18_the-spatstat-package.Rmd b/18_the-spatstat-package.Rmd new file mode 100644 index 0000000..4ef9699 --- /dev/null +++ b/18_the-spatstat-package.Rmd @@ -0,0 +1,24 @@ +# The spatstat package + +**Learning objectives:** + +- THESE ARE NICE TO HAVE BUT NOT ABSOLUTELY NECESSARY + +## SLIDE 1 {-} + +- ADD SLIDES AS SECTIONS (`##`). +- TRY TO KEEP THEM RELATIVELY SLIDE-LIKE; THESE ARE NOTES, NOT THE BOOK ITSELF. + +## Meeting Videos {-} + +### Cohort 1 {-} + +`r knitr::include_url("https://www.youtube.com/embed/URL")` + +
+ Meeting chat log + +``` +LOG +``` +
diff --git a/19_spatial-point-processes-and-simulation.Rmd b/19_spatial-point-processes-and-simulation.Rmd new file mode 100644 index 0000000..9dfa93c --- /dev/null +++ b/19_spatial-point-processes-and-simulation.Rmd @@ -0,0 +1,24 @@ +# Spatial point processes and simulation + +**Learning objectives:** + +- THESE ARE NICE TO HAVE BUT NOT ABSOLUTELY NECESSARY + +## SLIDE 1 {-} + +- ADD SLIDES AS SECTIONS (`##`). +- TRY TO KEEP THEM RELATIVELY SLIDE-LIKE; THESE ARE NOTES, NOT THE BOOK ITSELF. + +## Meeting Videos {-} + +### Cohort 1 {-} + +`r knitr::include_url("https://www.youtube.com/embed/URL")` + +
+ Meeting chat log + +``` +LOG +``` +
diff --git a/20_complete-spatial-randomness.Rmd b/20_complete-spatial-randomness.Rmd new file mode 100644 index 0000000..ef40f06 --- /dev/null +++ b/20_complete-spatial-randomness.Rmd @@ -0,0 +1,24 @@ +# Complete spatial randomness + +**Learning objectives:** + +- THESE ARE NICE TO HAVE BUT NOT ABSOLUTELY NECESSARY + +## SLIDE 1 {-} + +- ADD SLIDES AS SECTIONS (`##`). +- TRY TO KEEP THEM RELATIVELY SLIDE-LIKE; THESE ARE NOTES, NOT THE BOOK ITSELF. + +## Meeting Videos {-} + +### Cohort 1 {-} + +`r knitr::include_url("https://www.youtube.com/embed/URL")` + +
+ Meeting chat log + +``` +LOG +``` +
diff --git a/21_intensity-estimation.Rmd b/21_intensity-estimation.Rmd new file mode 100644 index 0000000..1a7121b --- /dev/null +++ b/21_intensity-estimation.Rmd @@ -0,0 +1,24 @@ +# Intensity estimation + +**Learning objectives:** + +- THESE ARE NICE TO HAVE BUT NOT ABSOLUTELY NECESSARY + +## SLIDE 1 {-} + +- ADD SLIDES AS SECTIONS (`##`). +- TRY TO KEEP THEM RELATIVELY SLIDE-LIKE; THESE ARE NOTES, NOT THE BOOK ITSELF. + +## Meeting Videos {-} + +### Cohort 1 {-} + +`r knitr::include_url("https://www.youtube.com/embed/URL")` + +
+ Meeting chat log + +``` +LOG +``` +
diff --git a/22_the-k-function.Rmd b/22_the-k-function.Rmd new file mode 100644 index 0000000..c30ec31 --- /dev/null +++ b/22_the-k-function.Rmd @@ -0,0 +1,24 @@ +# The K-function + +**Learning objectives:** + +- THESE ARE NICE TO HAVE BUT NOT ABSOLUTELY NECESSARY + +## SLIDE 1 {-} + +- ADD SLIDES AS SECTIONS (`##`). +- TRY TO KEEP THEM RELATIVELY SLIDE-LIKE; THESE ARE NOTES, NOT THE BOOK ITSELF. + +## Meeting Videos {-} + +### Cohort 1 {-} + +`r knitr::include_url("https://www.youtube.com/embed/URL")` + +
+ Meeting chat log + +``` +LOG +``` +
diff --git a/23_point-process-modeling.Rmd b/23_point-process-modeling.Rmd new file mode 100644 index 0000000..c2245f8 --- /dev/null +++ b/23_point-process-modeling.Rmd @@ -0,0 +1,24 @@ +# Point process modeling + +**Learning objectives:** + +- THESE ARE NICE TO HAVE BUT NOT ABSOLUTELY NECESSARY + +## SLIDE 1 {-} + +- ADD SLIDES AS SECTIONS (`##`). +- TRY TO KEEP THEM RELATIVELY SLIDE-LIKE; THESE ARE NOTES, NOT THE BOOK ITSELF. + +## Meeting Videos {-} + +### Cohort 1 {-} + +`r knitr::include_url("https://www.youtube.com/embed/URL")` + +
+ Meeting chat log + +``` +LOG +``` +
From 78d8255c69f5dd1bd73d232f88a4b7587f659905 Mon Sep 17 00:00:00 2001 From: Jon Harmon Date: Fri, 19 Jan 2024 07:00:22 -0600 Subject: [PATCH 2/2] Correct meeting day. --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 37e5ce3..4f29555 100644 --- a/README.md +++ b/README.md @@ -11,7 +11,7 @@ As we read, we are producing [notes about the book](https://r4ds.io/spacestats). If you would like to present, please see the sign-up sheet for your cohort (linked below, and pinned in the [#book_club-spacestats](https://rfordatascience.slack.com/archives/C066RJ24SHF) channel on Slack)! -- [Cohort 1](https://docs.google.com/spreadsheets/d/1cD_aXJJ73O1cL3EI79-e_Y9eWNNqvftv8das1hcBGRA/edit?usp=sharing) (started 2024-01-20, facilitated by Mikhael Manurung): [Sundays, 10:00 AM CST/CDT](https://www.timeanddate.com/worldclock/converter.html?iso=20240120T160000&p1=24&p2=1440) | [meeting videos](https://www.youtube.com/playlist?list=PL3x6DOfs2NGhACUSnWhcsTLMbDikFQ8fL) +- [Cohort 1](https://docs.google.com/spreadsheets/d/1cD_aXJJ73O1cL3EI79-e_Y9eWNNqvftv8das1hcBGRA/edit?usp=sharing) (started 2024-01-20, facilitated by Mikhael Manurung): [Saturdays, 10:00 AM CST/CDT](https://www.timeanddate.com/worldclock/converter.html?iso=20240120T160000&p1=24&p2=1440) | [meeting videos](https://www.youtube.com/playlist?list=PL3x6DOfs2NGhACUSnWhcsTLMbDikFQ8fL)